AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74859.t1 MTR_1g079140 94.498 309 17 0 1 309 2 310 0.0 599
MS.gene74859.t1 MTR_1g079130 85.787 197 24 2 113 309 1 193 1.39e-119 342
MS.gene74859.t1 MTR_1g079370 49.498 299 111 6 11 305 3 265 1.43e-93 278
MS.gene74859.t1 MTR_1g079260 51.864 295 115 7 12 305 4 272 8.09e-93 277
MS.gene74859.t1 MTR_1g079380 47.157 299 124 5 11 308 3 268 3.23e-86 261
MS.gene74859.t1 MTR_1g100597 48.322 298 127 6 12 308 4 275 4.95e-85 257
MS.gene74859.t1 MTR_1g079460 47.475 297 123 5 10 305 2 266 6.91e-83 251
MS.gene74859.t1 MTR_1g079180 47.492 299 117 8 11 305 3 265 1.22e-81 248
MS.gene74859.t1 MTR_1g079200 46.980 298 119 6 11 305 3 264 2.25e-81 247
MS.gene74859.t1 MTR_1g079410 45.752 306 128 5 5 305 1 273 4.21e-77 236
MS.gene74859.t1 MTR_1g079850 44.482 299 144 5 10 305 2 281 3.62e-74 229
MS.gene74859.t1 MTR_1g079230 44.816 299 137 6 12 308 4 276 1.23e-72 225
MS.gene74859.t1 MTR_1g100613 46.743 261 118 4 28 288 5 244 3.56e-71 221
MS.gene74859.t1 MTR_1g079250 44.816 299 136 6 12 305 4 278 1.37e-67 213
MS.gene74859.t1 MTR_1g026510 42.000 300 148 5 12 305 4 283 2.04e-67 213
MS.gene74859.t1 MTR_7g112550 42.466 292 149 10 15 305 10 283 5.04e-67 211
MS.gene74859.t1 MTR_7g112560 41.438 292 134 5 15 306 4 258 3.68e-65 206
MS.gene74859.t1 MTR_1g083580 40.273 293 151 8 15 305 11 281 7.59e-65 206
MS.gene74859.t1 MTR_3g452600 40.816 294 138 5 12 305 10 267 8.40e-65 205
MS.gene74859.t1 MTR_1g079400 40.614 293 146 4 15 306 15 280 2.50e-64 204
MS.gene74859.t1 MTR_3g006850 43.131 313 151 10 12 308 17 318 6.69e-63 202
MS.gene74859.t1 MTR_4g023570 39.041 292 121 5 15 306 4 238 1.48e-58 188
MS.gene74859.t1 MTR_2g079100 39.590 293 131 6 14 302 11 261 1.83e-56 184
MS.gene74859.t1 MTR_1g079350 39.057 297 153 7 12 305 4 275 2.68e-55 181
MS.gene74859.t1 MTR_3g450990 36.129 310 146 7 12 305 10 283 1.15e-52 174
MS.gene74859.t1 MTR_1g079340 37.621 311 149 11 12 305 43 325 7.85e-43 150
MS.gene74859.t1 MTR_7g096300 39.223 283 119 9 12 285 4 242 1.75e-41 153
MS.gene74859.t1 MTR_1g078470 43.216 199 76 6 109 305 21 184 3.08e-39 136
MS.gene74859.t1 MTR_1g079350 35.965 228 114 7 12 222 4 216 5.50e-29 110
MS.gene74859.t1 MTR_1g079240 37.019 208 90 5 99 305 12 179 9.69e-29 109
MS.gene74859.t1 MTR_7g103380 26.821 302 171 8 14 304 21 283 2.90e-25 102
MS.gene74859.t1 MTR_1g101390 38.462 143 85 2 14 156 30 169 7.91e-24 99.0
MS.gene74859.t1 MTR_1g076870 39.189 148 74 5 140 285 2 135 4.39e-23 92.8
MS.gene74859.t1 MTR_4g083970 26.587 252 131 6 56 305 91 290 9.24e-23 95.9
MS.gene74859.t1 MTR_0002s0020 30.332 211 129 4 14 209 24 231 2.29e-22 94.7
MS.gene74859.t1 MTR_0113s0040 33.566 143 92 2 14 156 24 163 7.44e-21 90.5
MS.gene74859.t1 MTR_5g010800 28.910 211 135 7 9 208 14 220 5.15e-20 88.2
MS.gene74859.t1 MTR_4g102770 36.552 145 86 3 14 156 21 161 5.23e-19 85.5
MS.gene74859.t1 MTR_2g042540 42.857 105 56 2 12 115 4 105 7.72e-19 81.3
MS.gene74859.t1 MTR_7g096310 46.154 104 46 3 78 176 43 141 1.22e-18 82.0
MS.gene74859.t1 MTR_1g078460 47.191 89 41 2 12 99 67 150 8.17e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74859.t1 AT2G02230 41.935 310 156 7 12 305 32 333 8.18e-77 238
MS.gene74859.t1 AT2G02250 44.631 298 126 7 12 308 47 306 1.46e-76 236
MS.gene74859.t1 AT2G02360 41.391 302 135 5 5 304 7 268 1.01e-73 228
MS.gene74859.t1 AT2G02240 44.444 297 127 7 12 308 61 319 3.33e-72 226
MS.gene74859.t1 AT2G02340 41.806 299 137 6 11 304 35 301 2.82e-71 223
MS.gene74859.t1 AT1G09155 41.497 294 153 6 15 305 3 280 1.08e-66 211
MS.gene74859.t1 AT1G80110 41.497 294 132 6 12 304 1 255 4.20e-64 203
MS.gene74859.t1 AT1G56250 41.695 295 153 6 15 306 4 282 5.61e-61 196
MS.gene74859.t1 AT1G56240 40.956 293 154 6 15 304 4 280 1.02e-60 195
MS.gene74859.t1 AT2G02350 37.966 295 141 6 14 304 26 282 3.39e-54 179
MS.gene74859.t1 AT2G02320 36.482 307 147 9 8 307 36 301 1.99e-53 177
MS.gene74859.t1 AT2G02310 34.653 303 146 5 12 305 45 304 6.76e-52 173
MS.gene74859.t1 AT2G02300 36.364 308 136 9 5 305 27 281 4.17e-49 165
MS.gene74859.t1 AT5G24560 52.381 147 63 1 10 156 1 140 1.71e-48 160
MS.gene74859.t1 AT5G24560 52.632 57 26 1 249 305 137 192 1.67e-13 68.6
MS.gene74859.t1 AT3G53000 27.152 302 169 8 14 304 23 284 6.67e-27 107
MS.gene74859.t1 AT3G61060 37.762 143 86 2 14 156 27 166 1.50e-24 100
MS.gene74859.t1 AT3G61060 36.364 143 89 1 14 156 27 167 7.12e-24 99.0
MS.gene74859.t1 AT1G63090 33.125 160 101 3 14 173 28 181 1.28e-18 84.7
MS.gene74859.t1 AT1G12710 27.523 218 139 5 14 219 30 240 7.09e-17 79.7
MS.gene74859.t1 AT5G52120 30.921 152 98 3 12 158 21 170 1.56e-15 75.9
MS.gene74859.t1 AT1G12710 30.075 133 89 2 14 146 30 158 5.81e-12 65.9

Find 92 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTTAAGTCGTGTGCTTC+TGG 0.238126 1.1:-58851739 MS.gene74859:CDS
TTAACATAAAGATCCTTCTT+AGG 0.300044 1.1:+58852879 None:intergenic
TGATGTTGCCAGACTCTCTT+TGG 0.301539 1.1:-58853024 MS.gene74859:CDS
TTGTTCAAGGAATTGAAATA+AGG 0.305610 1.1:-58851372 MS.gene74859:CDS
CGAGGAGTTTGTTTATTGTA+TGG 0.313317 1.1:-58852603 MS.gene74859:CDS
ATCAATAATTACCTTGAATC+TGG 0.315150 1.1:+58852544 None:intergenic
CGCTGAATCTGATTCCGTTT+GGG 0.321898 1.1:-58852979 MS.gene74859:CDS
GTTCCTCGCTCCCGTACTAC+TGG 0.324533 1.1:-58851598 MS.gene74859:CDS
TTTCAACATGATTTAGTCTT+GGG 0.347934 1.1:+58851349 None:intergenic
GATGATAAGCAGGTGGATAT+AGG 0.348560 1.1:-58851436 MS.gene74859:CDS
CATCCATCTGCTCTCTCCTT+TGG 0.359290 1.1:+58851499 None:intergenic
CCGCTGAATCTGATTCCGTT+TGG 0.370563 1.1:-58852980 MS.gene74859:CDS
GTGTGTGTTGGTTTGAAATC+CGG 0.378711 1.1:-58851816 MS.gene74859:CDS
TTTCAATTGGATAAAGTTGA+TGG 0.381470 1.1:-58852649 MS.gene74859:CDS
TATGCTCCGTACAAAGTCTT+TGG 0.387723 1.1:+58851766 None:intergenic
TCTTATAGAGAATGGCAAAA+AGG 0.392809 1.1:-58852838 MS.gene74859:intron
GTGGAATTAGAGCTTTCAAT+TGG 0.395595 1.1:-58852662 MS.gene74859:intron
CTTTCAACATGATTTAGTCT+TGG 0.409533 1.1:+58851348 None:intergenic
ACTTTCTGTCCTTCCTAAGA+AGG 0.410241 1.1:-58852892 MS.gene74859:CDS
GGGGAGATACTCCGAGGTAT+TGG 0.424153 1.1:-58852582 MS.gene74859:CDS
ACACTTTCTGTCGGTTCGAC+TGG 0.424281 1.1:+58851541 None:intergenic
TTCGTCCTCTTTCCGCATCC+AGG 0.433202 1.1:+58851638 None:intergenic
GAAGAAATGCTATATGTTAT+CGG 0.434218 1.1:-58852626 MS.gene74859:CDS
TGGATGGTTGGAGATGGAAC+TGG 0.446369 1.1:-58851482 MS.gene74859:CDS
TGATGAAACCAAAGAGAGTC+TGG 0.447781 1.1:+58853016 None:intergenic
AAGGGTGGTCTTGTTGTTCA+AGG 0.455014 1.1:-58851385 MS.gene74859:CDS
GAGGAGTTTGTTTATTGTAT+GGG 0.456794 1.1:-58852602 MS.gene74859:CDS
TGTGGAGCGAAATGTATTCC+TGG 0.457716 1.1:-58851656 MS.gene74859:CDS
GTTGTTGTTATTGAAGAAGA+AGG 0.459058 1.1:-58853110 MS.gene74859:CDS
GGTCAAAGGTGGTGGTTGGA+AGG 0.462655 1.1:-58851404 MS.gene74859:CDS
GAAGCCTCCATTGTCATTGC+TGG 0.466915 1.1:-58851688 MS.gene74859:CDS
GGTTCGACTGGTGCTTCTAC+AGG 0.471350 1.1:+58851553 None:intergenic
TGTGTGTTGGTTTGAAATCC+GGG 0.478562 1.1:-58851815 MS.gene74859:CDS
AATTACCTTGAATCTGGATC+AGG 0.480628 1.1:+58852550 None:intergenic
GTCAAAGGTGGTGGTTGGAA+GGG 0.482667 1.1:-58851403 MS.gene74859:CDS
GTTGGTTTGAAATCCGGGGC+TGG 0.485855 1.1:-58851810 MS.gene74859:CDS
AAAGGTGGTGGTTGGAAGGG+TGG 0.488197 1.1:-58851400 MS.gene74859:CDS
CTGAACTTGTATGTGTGTGT+TGG 0.488534 1.1:-58851828 MS.gene74859:CDS
GGAGAGAGCAGATGGATGGT+TGG 0.491839 1.1:-58851494 MS.gene74859:CDS
AAACCGCTTCTTATAGAGAA+TGG 0.492385 1.1:-58852846 MS.gene74859:CDS
TATCCAAAGGAGAGAGCAGA+TGG 0.495506 1.1:-58851502 MS.gene74859:CDS
GTTTGTGAGGTCAAAGGTGG+TGG 0.499525 1.1:-58851412 MS.gene74859:CDS
ATGGCTGACGTTCAAATCCA+TGG 0.500695 1.1:+58851713 None:intergenic
TTATCTCCAAAGACTTTGTA+CGG 0.508567 1.1:-58851772 MS.gene74859:CDS
GAGTGAATATCCCAGTAGTA+CGG 0.521109 1.1:+58851587 None:intergenic
TACGGGAGCGAGGAACAATC+TGG 0.523651 1.1:+58851605 None:intergenic
GGATGGTTGGAGATGGAACT+GGG 0.523758 1.1:-58851481 MS.gene74859:CDS
CTGGGAGAGTTCTTCAACGA+AGG 0.524006 1.1:-58851463 MS.gene74859:CDS
GAATTTCATGATCTACCTGA+AGG 0.533212 1.1:-58853083 MS.gene74859:CDS
CATAAAGATCCTTCTTAGGA+AGG 0.533612 1.1:+58852883 None:intergenic
GTGAGGTCAAAGGTGGTGGT+TGG 0.539242 1.1:-58851408 MS.gene74859:CDS
GAGATACTCCGAGGTATTGG+AGG 0.542088 1.1:-58852579 MS.gene74859:CDS
TTCCTCGCTCCCGTACTACT+GGG 0.544526 1.1:-58851597 MS.gene74859:CDS
TCGTGTGCTTCTGGATCCCA+TGG 0.545911 1.1:-58851730 MS.gene74859:CDS
TTCAATTGGATAAAGTTGAT+GGG 0.546457 1.1:-58852648 MS.gene74859:CDS
AGCAGATGGATGGTTGGAGA+TGG 0.552106 1.1:-58851488 MS.gene74859:CDS
AGGAGTTTGTTTATTGTATG+GGG 0.552502 1.1:-58852601 MS.gene74859:CDS
ATACTCCGAGGTATTGGAGG+TGG 0.553518 1.1:-58852576 MS.gene74859:CDS
CGAAGGAGGAGATGATAAGC+AGG 0.556193 1.1:-58851446 MS.gene74859:CDS
AGTGAATATCCCAGTAGTAC+GGG 0.556344 1.1:+58851588 None:intergenic
TTGCCATTCTCTATAAGAAG+CGG 0.557636 1.1:+58852843 None:intergenic
GGATTCCTGATCCAGATTCA+AGG 0.561889 1.1:-58852555 MS.gene74859:intron
CATACAAGTTCAGCTGCCTC+AGG 0.566765 1.1:+58851838 None:intergenic
GTATTCCTGGATGCGGAAAG+AGG 0.566850 1.1:-58851643 MS.gene74859:CDS
TGGCTGACGTTCAAATCCAT+GGG 0.581295 1.1:+58851714 None:intergenic
GCGAAATGTATTCCTGGATG+CGG 0.591992 1.1:-58851650 MS.gene74859:CDS
ATAGGTGTTTGTGAGGTCAA+AGG 0.597323 1.1:-58851418 MS.gene74859:CDS
AATTATCTCTAAATCTGATG+CGG 0.603424 1.1:-58852928 MS.gene74859:CDS
CAAAGGAGAGAGCAGATGGA+TGG 0.604933 1.1:-58851498 MS.gene74859:CDS
ATAATTGAGTGATAATCAGA+AGG 0.608883 1.1:+58852945 None:intergenic
TGATAGTGTTGATCCAGCCC+CGG 0.609203 1.1:+58851797 None:intergenic
GGAGAGTTCTTCAACGAAGG+AGG 0.610295 1.1:-58851460 MS.gene74859:CDS
ATCACCTCCAGCAATGACAA+TGG 0.618256 1.1:+58851681 None:intergenic
AGATCGTCTACACTTTCTGT+CGG 0.618327 1.1:+58851532 None:intergenic
GGTGTTTGTGAGGTCAAAGG+TGG 0.628547 1.1:-58851415 MS.gene74859:CDS
ATGACAATGGAGGCTTCACA+TGG 0.637596 1.1:+58851694 None:intergenic
GAGAGTCTGGCAACATCACG+TGG 0.638064 1.1:+58853029 None:intergenic
AAGCACACGACTTAAATACA+AGG 0.639864 1.1:+58851743 None:intergenic
ATCCCAGTAGTACGGGAGCG+AGG 0.643143 1.1:+58851595 None:intergenic
GCCTCCATTGTCATTGCTGG+AGG 0.652619 1.1:-58851685 MS.gene74859:CDS
CGATCTGCAGAAGTATCCAA+AGG 0.652956 1.1:-58851515 MS.gene74859:CDS
GGAATCCACCTCCAATACCT+CGG 0.660263 1.1:+58852571 None:intergenic
GGTGGATATAGGTGTTTGTG+AGG 0.665629 1.1:-58851425 MS.gene74859:CDS
AGGAGGAGATGATAAGCAGG+TGG 0.665872 1.1:-58851443 MS.gene74859:CDS
CCAAACGGAATCAGATTCAG+CGG 0.667320 1.1:+58852980 None:intergenic
ACCTCCAGCAATGACAATGG+AGG 0.673224 1.1:+58851684 None:intergenic
GTGTGTTGGTTTGAAATCCG+GGG 0.678898 1.1:-58851814 MS.gene74859:CDS
CATTGCTGGAGGTGATACTG+TGG 0.688260 1.1:-58851674 MS.gene74859:CDS
AACGGAATCAGATTCAGCGG+CGG 0.691393 1.1:+58852983 None:intergenic
AATGCTATATGTTATCGGCG+AGG 0.704244 1.1:-58852621 MS.gene74859:CDS
TTGTATGGGGAGATACTCCG+AGG 0.719053 1.1:-58852588 MS.gene74859:CDS
TGGATGCGGAAAGAGGACGA+AGG 0.783182 1.1:-58851636 MS.gene74859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATAAACATTTAATTA+AGG - chr1.1:58852440-58852459 MS.gene74859:intron 10.0%
!! ACAAAAAAACAAAAACAAAT+TGG + chr1.1:58851665-58851684 None:intergenic 15.0%
!! GAATTATATGAAAATGTTTA+TGG + chr1.1:58852068-58852087 None:intergenic 15.0%
!!! GTGTTAATTTATATTTTTCT+TGG - chr1.1:58851757-58851776 MS.gene74859:CDS 15.0%
!! AAAAAACAAAAACAAATTGG+AGG + chr1.1:58851662-58851681 None:intergenic 20.0%
!! AGTAATAATGTTAGACTAAA+CGG + chr1.1:58851708-58851727 None:intergenic 20.0%
!! TAGATCACATTAAATTATGT+AGG - chr1.1:58852039-58852058 MS.gene74859:intron 20.0%
!! TATGAAAATAAACAGCTTAT+GGG + chr1.1:58852256-58852275 None:intergenic 20.0%
!! TTATGAAAATAAACAGCTTA+TGG + chr1.1:58852257-58852276 None:intergenic 20.0%
!! TTGATTTATTTGAACTTATC+TGG - chr1.1:58852102-58852121 MS.gene74859:intron 20.0%
! AATTATCTCTAAATCTGATG+CGG - chr1.1:58851536-58851555 MS.gene74859:CDS 25.0%
! ATAATTGAGTGATAATCAGA+AGG + chr1.1:58851522-58851541 None:intergenic 25.0%
! ATCAATAATTACCTTGAATC+TGG + chr1.1:58851923-58851942 None:intergenic 25.0%
! GAAGAAATGCTATATGTTAT+CGG - chr1.1:58851838-58851857 MS.gene74859:CDS 25.0%
! TAAGATCAATCAATTTAGTC+AGG - chr1.1:58852489-58852508 MS.gene74859:intron 25.0%
! TGTGATCTAATACATGAAAA+AGG + chr1.1:58852028-58852047 None:intergenic 25.0%
! TTAACATAAAGATCCTTCTT+AGG + chr1.1:58851588-58851607 None:intergenic 25.0%
! TTGATTTATTCTTGAAGTTC+TGG - chr1.1:58851938-58851957 MS.gene74859:intron 25.0%
! TTGTTCAAGGAATTGAAATA+AGG - chr1.1:58853092-58853111 MS.gene74859:CDS 25.0%
! TTTCAATTGGATAAAGTTGA+TGG - chr1.1:58851815-58851834 MS.gene74859:CDS 25.0%
!! CATTTAATTAAGGTGTTTGA+TGG - chr1.1:58852450-58852469 MS.gene74859:intron 25.0%
!! TTCAATTGGATAAAGTTGAT+GGG - chr1.1:58851816-58851835 MS.gene74859:CDS 25.0%
AACAAAAACAAATTGGAGGT+AGG + chr1.1:58851658-58851677 None:intergenic 30.0%
AGGCAAAAATTTATCCCAAA+CGG + chr1.1:58851502-58851521 None:intergenic 30.0%
TAAGATCAATCAACTTAGTC+TGG - chr1.1:58852401-58852420 MS.gene74859:intron 30.0%
TCATATAATTCACGCATGTT+TGG - chr1.1:58852077-58852096 MS.gene74859:intron 30.0%
TCTTATAGAGAATGGCAAAA+AGG - chr1.1:58851626-58851645 MS.gene74859:CDS 30.0%
TTATCTCCAAAGACTTTGTA+CGG - chr1.1:58852692-58852711 MS.gene74859:intron 30.0%
TTCCACATAAAACAAAACCA+CGG + chr1.1:58851788-58851807 None:intergenic 30.0%
! AGGAGTTTGTTTATTGTATG+GGG - chr1.1:58851863-58851882 MS.gene74859:intron 30.0%
! CTTAGATTTTGTTCAATCAC+TGG + chr1.1:58852585-58852604 None:intergenic 30.0%
! GAGGAGTTTGTTTATTGTAT+GGG - chr1.1:58851862-58851881 MS.gene74859:intron 30.0%
! GTTGTTGTTATTGAAGAAGA+AGG - chr1.1:58851354-58851373 MS.gene74859:CDS 30.0%
! TATTCTAGAGATTACTTCCT+TGG - chr1.1:58852547-58852566 MS.gene74859:intron 30.0%
!! TAAGCTGTTTTCATAAGCTA+TGG + chr1.1:58852288-58852307 None:intergenic 30.0%
!!! TGTTTTTTTGTTGTGAGTCT+CGG - chr1.1:58851674-58851693 MS.gene74859:CDS 30.0%
AAACCGCTTCTTATAGAGAA+TGG - chr1.1:58851618-58851637 MS.gene74859:CDS 35.0%
AAGCACACGACTTAAATACA+AGG + chr1.1:58852724-58852743 None:intergenic 35.0%
AATTACCTTGAATCTGGATC+AGG + chr1.1:58851917-58851936 None:intergenic 35.0%
CATAAAGATCCTTCTTAGGA+AGG + chr1.1:58851584-58851603 None:intergenic 35.0%
CTAAGCGATTCAAAAAATGC+AGG - chr1.1:58852600-58852619 MS.gene74859:CDS 35.0%
GAATTTCATGATCTACCTGA+AGG - chr1.1:58851381-58851400 MS.gene74859:CDS 35.0%
GTGGAATTAGAGCTTTCAAT+TGG - chr1.1:58851802-58851821 MS.gene74859:CDS 35.0%
TTGCCATTCTCTATAAGAAG+CGG + chr1.1:58851624-58851643 None:intergenic 35.0%
! CGAGGAGTTTGTTTATTGTA+TGG - chr1.1:58851861-58851880 MS.gene74859:intron 35.0%
! TATTTTTCTTGGCTAATCCG+TGG - chr1.1:58851768-58851787 MS.gene74859:CDS 35.0%
!! ATCAAACGCATTAGTCTTCA+AGG + chr1.1:58852522-58852541 None:intergenic 35.0%
!!! ATCCGTGGTTTTGTTTTATG+TGG - chr1.1:58851783-58851802 MS.gene74859:CDS 35.0%
!!! GTTTTTTTGTTGTGAGTCTC+GGG - chr1.1:58851675-58851694 MS.gene74859:CDS 35.0%
AATGCTATATGTTATCGGCG+AGG - chr1.1:58851843-58851862 MS.gene74859:CDS 40.0%
ACTGGTCAATTTAGTGACCA+AGG + chr1.1:58852567-58852586 None:intergenic 40.0%
ACTTTCTGTCCTTCCTAAGA+AGG - chr1.1:58851572-58851591 MS.gene74859:CDS 40.0%
AGATCGTCTACACTTTCTGT+CGG + chr1.1:58852935-58852954 None:intergenic 40.0%
AGTGAATATCCCAGTAGTAC+GGG + chr1.1:58852879-58852898 None:intergenic 40.0%
ATAGGTGTTTGTGAGGTCAA+AGG - chr1.1:58853046-58853065 MS.gene74859:CDS 40.0%
CAAAAAATGCAGGTTTCCTG+AGG - chr1.1:58852610-58852629 MS.gene74859:CDS 40.0%
CTGAACTTGTATGTGTGTGT+TGG - chr1.1:58852636-58852655 MS.gene74859:CDS 40.0%
GAGTGAATATCCCAGTAGTA+CGG + chr1.1:58852880-58852899 None:intergenic 40.0%
GATGATAAGCAGGTGGATAT+AGG - chr1.1:58853028-58853047 MS.gene74859:CDS 40.0%
GTATTTAAGTCGTGTGCTTC+TGG - chr1.1:58852725-58852744 MS.gene74859:intron 40.0%
TATGCTCCGTACAAAGTCTT+TGG + chr1.1:58852701-58852720 None:intergenic 40.0%
TGATGAAACCAAAGAGAGTC+TGG + chr1.1:58851451-58851470 None:intergenic 40.0%
! ACGTTTTCAATGCAACCTTC+AGG + chr1.1:58851399-58851418 None:intergenic 40.0%
!! GCTGTTTTCATAAGCTATGG+TGG + chr1.1:58852285-58852304 None:intergenic 40.0%
!! GTGTGTGTTGGTTTGAAATC+CGG - chr1.1:58852648-58852667 MS.gene74859:CDS 40.0%
!! TGTGTGTTGGTTTGAAATCC+GGG - chr1.1:58852649-58852668 MS.gene74859:CDS 40.0%
ATCACCTCCAGCAATGACAA+TGG + chr1.1:58852786-58852805 None:intergenic 45.0%
ATGACAATGGAGGCTTCACA+TGG + chr1.1:58852773-58852792 None:intergenic 45.0%
ATGGCTGACGTTCAAATCCA+TGG + chr1.1:58852754-58852773 None:intergenic 45.0%
CCAAACGGAATCAGATTCAG+CGG + chr1.1:58851487-58851506 None:intergenic 45.0%
CGCTGAATCTGATTCCGTTT+GGG - chr1.1:58851485-58851504 MS.gene74859:CDS 45.0%
GCGAAATGTATTCCTGGATG+CGG - chr1.1:58852814-58852833 MS.gene74859:intron 45.0%
GGATTCCTGATCCAGATTCA+AGG - chr1.1:58851909-58851928 MS.gene74859:intron 45.0%
GGTGGATATAGGTGTTTGTG+AGG - chr1.1:58853039-58853058 MS.gene74859:CDS 45.0%
TATCCAAAGGAGAGAGCAGA+TGG - chr1.1:58852962-58852981 MS.gene74859:CDS 45.0%
TGATGTTGCCAGACTCTCTT+TGG - chr1.1:58851440-58851459 MS.gene74859:CDS 45.0%
TGGCTGACGTTCAAATCCAT+GGG + chr1.1:58852753-58852772 None:intergenic 45.0%
TGTGGAGCGAAATGTATTCC+TGG - chr1.1:58852808-58852827 MS.gene74859:intron 45.0%
!! AAGGGTGGTCTTGTTGTTCA+AGG - chr1.1:58853079-58853098 MS.gene74859:CDS 45.0%
!! CGATCTGCAGAAGTATCCAA+AGG - chr1.1:58852949-58852968 MS.gene74859:CDS 45.0%
!! GTGTGTTGGTTTGAAATCCG+GGG - chr1.1:58852650-58852669 MS.gene74859:CDS 45.0%
AACGGAATCAGATTCAGCGG+CGG + chr1.1:58851484-58851503 None:intergenic 50.0%
ACCTCCAGCAATGACAATGG+AGG + chr1.1:58852783-58852802 None:intergenic 50.0%
AGCAGATGGATGGTTGGAGA+TGG - chr1.1:58852976-58852995 MS.gene74859:CDS 50.0%
AGGAGGAGATGATAAGCAGG+TGG - chr1.1:58853021-58853040 MS.gene74859:CDS 50.0%
CAAAGGAGAGAGCAGATGGA+TGG - chr1.1:58852966-58852985 MS.gene74859:CDS 50.0%
CATACAAGTTCAGCTGCCTC+AGG + chr1.1:58852629-58852648 None:intergenic 50.0%
CATCCATCTGCTCTCTCCTT+TGG + chr1.1:58852968-58852987 None:intergenic 50.0%
CATTGCTGGAGGTGATACTG+TGG - chr1.1:58852790-58852809 MS.gene74859:intron 50.0%
CCGCTGAATCTGATTCCGTT+TGG - chr1.1:58851484-58851503 MS.gene74859:CDS 50.0%
CGAAGGAGGAGATGATAAGC+AGG - chr1.1:58853018-58853037 MS.gene74859:CDS 50.0%
CTGGGAGAGTTCTTCAACGA+AGG - chr1.1:58853001-58853020 MS.gene74859:CDS 50.0%
GAAGCCTCCATTGTCATTGC+TGG - chr1.1:58852776-58852795 MS.gene74859:intron 50.0%
GGAATCCACCTCCAATACCT+CGG + chr1.1:58851896-58851915 None:intergenic 50.0%
GGAGAGTTCTTCAACGAAGG+AGG - chr1.1:58853004-58853023 MS.gene74859:CDS 50.0%
GGATGGTTGGAGATGGAACT+GGG - chr1.1:58852983-58853002 MS.gene74859:CDS 50.0%
GGTGTTTGTGAGGTCAAAGG+TGG - chr1.1:58853049-58853068 MS.gene74859:CDS 50.0%
GTATTCCTGGATGCGGAAAG+AGG - chr1.1:58852821-58852840 MS.gene74859:intron 50.0%
GTTTGTGAGGTCAAAGGTGG+TGG - chr1.1:58853052-58853071 MS.gene74859:CDS 50.0%
TGGATGGTTGGAGATGGAAC+TGG - chr1.1:58852982-58853001 MS.gene74859:CDS 50.0%
TTGTATGGGGAGATACTCCG+AGG - chr1.1:58851876-58851895 MS.gene74859:intron 50.0%
! GTCAAAGGTGGTGGTTGGAA+GGG - chr1.1:58853061-58853080 MS.gene74859:CDS 50.0%
!! ACACTTTCTGTCGGTTCGAC+TGG + chr1.1:58852926-58852945 None:intergenic 50.0%
!! ATACTCCGAGGTATTGGAGG+TGG - chr1.1:58851888-58851907 MS.gene74859:intron 50.0%
!! GAGATACTCCGAGGTATTGG+AGG - chr1.1:58851885-58851904 MS.gene74859:intron 50.0%
!! TGATAGTGTTGATCCAGCCC+CGG + chr1.1:58852670-58852689 None:intergenic 50.0%
GAGAGTCTGGCAACATCACG+TGG + chr1.1:58851438-58851457 None:intergenic 55.0%
GCCTCCATTGTCATTGCTGG+AGG - chr1.1:58852779-58852798 MS.gene74859:intron 55.0%
GGAGAGAGCAGATGGATGGT+TGG - chr1.1:58852970-58852989 MS.gene74859:CDS 55.0%
GGGGAGATACTCCGAGGTAT+TGG - chr1.1:58851882-58851901 MS.gene74859:intron 55.0%
GGTTCGACTGGTGCTTCTAC+AGG + chr1.1:58852914-58852933 None:intergenic 55.0%
TACGGGAGCGAGGAACAATC+TGG + chr1.1:58852862-58852881 None:intergenic 55.0%
TCGTGTGCTTCTGGATCCCA+TGG - chr1.1:58852734-58852753 MS.gene74859:intron 55.0%
TGGATGCGGAAAGAGGACGA+AGG - chr1.1:58852828-58852847 MS.gene74859:intron 55.0%
TTCCTCGCTCCCGTACTACT+GGG - chr1.1:58852867-58852886 MS.gene74859:CDS 55.0%
TTCGTCCTCTTTCCGCATCC+AGG + chr1.1:58852829-58852848 None:intergenic 55.0%
! AAAGGTGGTGGTTGGAAGGG+TGG - chr1.1:58853064-58853083 MS.gene74859:CDS 55.0%
! GGTCAAAGGTGGTGGTTGGA+AGG - chr1.1:58853060-58853079 MS.gene74859:CDS 55.0%
! GTGAGGTCAAAGGTGGTGGT+TGG - chr1.1:58853056-58853075 MS.gene74859:CDS 55.0%
!! GTTGGTTTGAAATCCGGGGC+TGG - chr1.1:58852654-58852673 MS.gene74859:CDS 55.0%
ATCCCAGTAGTACGGGAGCG+AGG + chr1.1:58852872-58852891 None:intergenic 60.0%
GTTCCTCGCTCCCGTACTAC+TGG - chr1.1:58852866-58852885 MS.gene74859:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 58851351 58853135 58851351 ID=MS.gene74859
chr1.1 mRNA 58851351 58853135 58851351 ID=MS.gene74859.t1;Parent=MS.gene74859
chr1.1 exon 58852839 58853135 58852839 ID=MS.gene74859.t1.exon1;Parent=MS.gene74859.t1
chr1.1 CDS 58852839 58853135 58852839 ID=cds.MS.gene74859.t1;Parent=MS.gene74859.t1
chr1.1 exon 58852556 58852674 58852556 ID=MS.gene74859.t1.exon2;Parent=MS.gene74859.t1
chr1.1 CDS 58852556 58852674 58852556 ID=cds.MS.gene74859.t1;Parent=MS.gene74859.t1
chr1.1 exon 58851351 58851864 58851351 ID=MS.gene74859.t1.exon3;Parent=MS.gene74859.t1
chr1.1 CDS 58851351 58851864 58851351 ID=cds.MS.gene74859.t1;Parent=MS.gene74859.t1
Gene Sequence

>MS.gene74859

ATGGTTGTTGTTATTGAAGAAGAAGGTATTGAATTTCATGATCTACCTGAAGGTTGCATTGAAAACGTTCTTTCTTTCACAACACCACGTGATGTTGCCAGACTCTCTTTGGTTTCATCAACTTTCAAATCCGCCGCTGAATCTGATTCCGTTTGGGATAAATTTTTGCCTTCTGATTATCACTCAATTATCTCTAAATCTGATGCGGAAATTGATAATTCACTTTCTGTCCTTCCTAAGAAGGATCTTTATGTTAATCTCACTCAGAAACCGCTTCTTATAGAGAATGGCAAAAAGGTAATTTCCTACCTCCAATTTGTTTTTGTTTTTTTGTTGTGAGTCTCGGGTTTGAATCCGTTTAGTCTAACATTATTACTGTTAATCACGAAAACATGTTGAAGTGTATGTGTTAATTTATATTTTTCTTGGCTAATCCGTGGTTTTGTTTTATGTGGAATTAGAGCTTTCAATTGGATAAAGTTGATGGGAAGAAATGCTATATGTTATCGGCGAGGAGTTTGTTTATTGTATGGGGAGATACTCCGAGGTATTGGAGGTGGATTCCTGATCCAGATTCAAGGTAATTATTGATTTATTCTTGAAGTTCTGGTTAATTCTGATTTGTTTGTTAAATTAACGAAATTATGAAATTTAAAATATTAGATCATATTAATCCTTTTTCATGTATTAGATCACATTAAATTATGTAGGTGTCCATAAACATTTTCATATAATTCACGCATGTTTGGAATTGATTTATTTGAACTTATCTGGATTGATTTATTTGAACTTATCTACTATGAACATAATACTCTAGAGTATTTATGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACCCATAAGCTGTTTATTTTCATAAGTTCTCCACCATAGCTTATGAAAACAGCTTATAGCTTAAATGAAAACTGTTTGATTTTATTTTATATTTCGTTTATATATAAGCATATGTTTATCATACTATAAACTGATGCTTATCAGTACTTTAAGATCAATCAACTTAGTCTGGAAATTGTATGTTTATCATACTATAAACATTTAATTAAGGTGTTTGATGGATGCTTATTAGTACTTTAAGATCAATCAATTTAGTCAGGAAATTGTCCTTGAAGACTAATGCGTTTGATGATTTTATTCTAGAGATTACTTCCTTGGTCACTAAATTGACCAGTGATTGAACAAAATCTAAGCGATTCAAAAAATGCAGGTTTCCTGAGGCAGCTGAACTTGTATGTGTGTGTTGGTTTGAAATCCGGGGCTGGATCAACACTATCATGTTATCTCCAAAGACTTTGTACGGAGCATACCTTGTATTTAAGTCGTGTGCTTCTGGATCCCATGGATTTGAACGTCAGCCATGTGAAGCCTCCATTGTCATTGCTGGAGGTGATACTGTGGAGCGAAATGTATTCCTGGATGCGGAAAGAGGACGAAGGCTAAGATACCAGATTGTTCCTCGCTCCCGTACTACTGGGATATTCACTCGACTTCGATCTCCTGTAGAAGCACCAGTCGAACCGACAGAAAGTGTAGACGATCTGCAGAAGTATCCAAAGGAGAGAGCAGATGGATGGTTGGAGATGGAACTGGGAGAGTTCTTCAACGAAGGAGGAGATGATAAGCAGGTGGATATAGGTGTTTGTGAGGTCAAAGGTGGTGGTTGGAAGGGTGGTCTTGTTGTTCAAGGAATTGAAATAAGGCCCAAGACTAAATCATGTTGA
Protein sequence

>MS.gene74859.t1

MVVVIEEEGIEFHDLPEGCIENVLSFTTPRDVARLSLVSSTFKSAAESDSVWDKFLPSDYHSIISKSDAEIDNSLSVLPKKDLYVNLTQKPLLIENGKKSFQLDKVDGKKCYMLSARSLFIVWGDTPRYWRWIPDPDSRFPEAAELVCVCWFEIRGWINTIMLSPKTLYGAYLVFKSCASGSHGFERQPCEASIVIAGGDTVERNVFLDAERGRRLRYQIVPRSRTTGIFTRLRSPVEAPVEPTESVDDLQKYPKERADGWLEMELGEFFNEGGDDKQVDIGVCEVKGGGWKGGLVVQGIEIRPKTKSC