Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95381.t1 | XP_013459742.1 | 77.3 | 273 | 56 | 2 | 1 | 273 | 1 | 267 | 1.30E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95381.t1 | Q9ZVQ8 | 36.6 | 279 | 162 | 9 | 3 | 272 | 29 | 301 | 2.5e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95381.t1 | A0A072UXI4 | 77.3 | 273 | 56 | 2 | 1 | 273 | 1 | 267 | 9.1e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95381.t1 | MTR_3g452600 | 77.289 | 273 | 56 | 2 | 1 | 273 | 1 | 267 | 6.30e-151 | 422 |
| MS.gene95381.t1 | MTR_3g450990 | 68.858 | 289 | 68 | 4 | 1 | 273 | 1 | 283 | 1.06e-133 | 379 |
| MS.gene95381.t1 | MTR_2g079100 | 66.912 | 272 | 72 | 5 | 4 | 270 | 3 | 261 | 9.19e-122 | 348 |
| MS.gene95381.t1 | MTR_1g079460 | 64.015 | 264 | 94 | 1 | 10 | 273 | 4 | 266 | 5.35e-116 | 334 |
| MS.gene95381.t1 | MTR_3g006850 | 56.958 | 309 | 93 | 6 | 3 | 273 | 9 | 315 | 1.67e-113 | 329 |
| MS.gene95381.t1 | MTR_1g079180 | 61.654 | 266 | 96 | 5 | 10 | 273 | 4 | 265 | 5.38e-111 | 321 |
| MS.gene95381.t1 | MTR_1g079370 | 60.674 | 267 | 97 | 5 | 10 | 273 | 4 | 265 | 1.33e-107 | 312 |
| MS.gene95381.t1 | MTR_1g100597 | 58.633 | 278 | 98 | 5 | 7 | 273 | 1 | 272 | 4.11e-107 | 311 |
| MS.gene95381.t1 | MTR_1g079230 | 58.545 | 275 | 98 | 6 | 10 | 273 | 4 | 273 | 1.57e-103 | 303 |
| MS.gene95381.t1 | MTR_1g079260 | 58.845 | 277 | 99 | 6 | 7 | 273 | 1 | 272 | 2.40e-103 | 302 |
| MS.gene95381.t1 | MTR_1g079200 | 58.647 | 266 | 103 | 3 | 10 | 273 | 4 | 264 | 1.31e-102 | 300 |
| MS.gene95381.t1 | MTR_1g079380 | 60.674 | 267 | 97 | 5 | 10 | 273 | 4 | 265 | 2.05e-100 | 295 |
| MS.gene95381.t1 | MTR_1g079850 | 55.714 | 280 | 108 | 3 | 9 | 273 | 3 | 281 | 2.08e-97 | 287 |
| MS.gene95381.t1 | MTR_1g079250 | 56.429 | 280 | 107 | 6 | 7 | 273 | 1 | 278 | 1.02e-93 | 278 |
| MS.gene95381.t1 | MTR_1g026510 | 53.333 | 285 | 113 | 7 | 7 | 273 | 1 | 283 | 4.67e-92 | 274 |
| MS.gene95381.t1 | MTR_1g100613 | 58.197 | 244 | 85 | 3 | 26 | 256 | 5 | 244 | 8.16e-90 | 266 |
| MS.gene95381.t1 | MTR_1g079350 | 52.000 | 275 | 124 | 5 | 7 | 273 | 1 | 275 | 1.08e-84 | 254 |
| MS.gene95381.t1 | MTR_7g096300 | 56.746 | 252 | 98 | 4 | 10 | 258 | 4 | 247 | 3.33e-81 | 259 |
| MS.gene95381.t1 | MTR_1g079410 | 48.162 | 272 | 129 | 6 | 9 | 273 | 7 | 273 | 5.46e-74 | 227 |
| MS.gene95381.t1 | MTR_1g079340 | 46.575 | 292 | 137 | 4 | 1 | 273 | 34 | 325 | 5.92e-72 | 224 |
| MS.gene95381.t1 | MTR_3g058640 | 90.566 | 106 | 9 | 1 | 133 | 237 | 1 | 106 | 1.85e-64 | 197 |
| MS.gene95381.t1 | MTR_1g079140 | 40.604 | 298 | 139 | 7 | 10 | 273 | 13 | 306 | 2.19e-60 | 194 |
| MS.gene95381.t1 | MTR_1g079400 | 42.182 | 275 | 139 | 6 | 11 | 273 | 13 | 279 | 4.90e-56 | 182 |
| MS.gene95381.t1 | MTR_1g078470 | 56.647 | 173 | 70 | 5 | 101 | 273 | 17 | 184 | 1.12e-55 | 177 |
| MS.gene95381.t1 | MTR_1g076870 | 63.704 | 135 | 31 | 1 | 138 | 254 | 2 | 136 | 2.67e-54 | 172 |
| MS.gene95381.t1 | MTR_1g079240 | 51.124 | 178 | 77 | 4 | 96 | 273 | 12 | 179 | 2.52e-47 | 156 |
| MS.gene95381.t1 | MTR_1g079350 | 48.404 | 188 | 90 | 4 | 7 | 189 | 1 | 186 | 3.56e-47 | 157 |
| MS.gene95381.t1 | MTR_7g112550 | 37.770 | 278 | 152 | 8 | 13 | 273 | 10 | 283 | 4.94e-46 | 156 |
| MS.gene95381.t1 | MTR_7g112560 | 37.736 | 265 | 156 | 6 | 10 | 273 | 1 | 257 | 7.15e-46 | 155 |
| MS.gene95381.t1 | MTR_1g083580 | 35.740 | 277 | 162 | 7 | 10 | 273 | 8 | 281 | 1.17e-45 | 155 |
| MS.gene95381.t1 | MTR_4g023570 | 36.742 | 264 | 140 | 7 | 10 | 273 | 1 | 237 | 5.32e-41 | 142 |
| MS.gene95381.t1 | MTR_2g042540 | 60.000 | 105 | 39 | 2 | 9 | 112 | 3 | 105 | 8.49e-36 | 125 |
| MS.gene95381.t1 | MTR_1g079210 | 51.220 | 123 | 46 | 1 | 139 | 247 | 7 | 129 | 7.22e-32 | 115 |
| MS.gene95381.t1 | MTR_1g078460 | 61.957 | 92 | 32 | 1 | 5 | 96 | 62 | 150 | 8.68e-32 | 115 |
| MS.gene95381.t1 | MTR_7g096310 | 46.452 | 155 | 71 | 4 | 44 | 196 | 19 | 163 | 2.23e-28 | 107 |
| MS.gene95381.t1 | MTR_1g079130 | 35.263 | 190 | 96 | 4 | 110 | 273 | 1 | 189 | 5.95e-25 | 98.6 |
| MS.gene95381.t1 | MTR_7g103380 | 24.101 | 278 | 179 | 9 | 12 | 272 | 21 | 283 | 1.06e-18 | 84.0 |
| MS.gene95381.t1 | MTR_1g079220 | 56.061 | 66 | 29 | 0 | 175 | 240 | 1 | 66 | 5.65e-18 | 76.6 |
| MS.gene95381.t1 | MTR_0113s0040 | 26.961 | 204 | 132 | 5 | 9 | 199 | 21 | 220 | 4.91e-15 | 73.6 |
| MS.gene95381.t1 | MTR_1g101390 | 24.727 | 275 | 170 | 8 | 12 | 272 | 30 | 281 | 1.59e-14 | 72.4 |
| MS.gene95381.t1 | MTR_0002s0020 | 25.352 | 213 | 135 | 7 | 12 | 205 | 24 | 231 | 5.12e-14 | 70.9 |
| MS.gene95381.t1 | MTR_1g079390 | 64.286 | 56 | 18 | 2 | 213 | 268 | 2 | 55 | 1.01e-13 | 64.7 |
| MS.gene95381.t1 | MTR_4g102770 | 31.250 | 144 | 95 | 3 | 12 | 154 | 21 | 161 | 7.92e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95381.t1 | AT1G80110 | 38.462 | 260 | 152 | 3 | 13 | 272 | 4 | 255 | 8.21e-50 | 165 |
| MS.gene95381.t1 | AT2G02360 | 35.125 | 279 | 163 | 7 | 1 | 272 | 1 | 268 | 7.92e-47 | 157 |
| MS.gene95381.t1 | AT2G02250 | 36.604 | 265 | 158 | 6 | 10 | 272 | 47 | 303 | 7.83e-46 | 156 |
| MS.gene95381.t1 | AT2G02240 | 37.358 | 265 | 155 | 7 | 10 | 272 | 61 | 316 | 4.05e-45 | 155 |
| MS.gene95381.t1 | AT2G02340 | 37.011 | 281 | 158 | 10 | 3 | 272 | 29 | 301 | 7.32e-45 | 154 |
| MS.gene95381.t1 | AT1G09155 | 37.943 | 282 | 150 | 9 | 13 | 273 | 3 | 280 | 1.11e-44 | 152 |
| MS.gene95381.t1 | AT2G02310 | 35.206 | 267 | 163 | 5 | 10 | 273 | 45 | 304 | 8.10e-41 | 143 |
| MS.gene95381.t1 | AT1G56240 | 36.525 | 282 | 152 | 9 | 13 | 272 | 4 | 280 | 1.10e-40 | 142 |
| MS.gene95381.t1 | AT1G56250 | 36.749 | 283 | 152 | 9 | 13 | 273 | 4 | 281 | 2.00e-40 | 141 |
| MS.gene95381.t1 | AT2G02230 | 31.529 | 314 | 161 | 10 | 6 | 273 | 28 | 333 | 4.31e-38 | 137 |
| MS.gene95381.t1 | AT2G02320 | 33.333 | 267 | 162 | 7 | 12 | 272 | 42 | 298 | 8.85e-37 | 132 |
| MS.gene95381.t1 | AT2G02350 | 32.210 | 267 | 169 | 7 | 10 | 272 | 24 | 282 | 1.30e-36 | 132 |
| MS.gene95381.t1 | AT2G02300 | 33.088 | 272 | 152 | 8 | 9 | 273 | 33 | 281 | 1.60e-32 | 121 |
| MS.gene95381.t1 | AT5G24560 | 33.696 | 184 | 103 | 6 | 10 | 190 | 3 | 170 | 3.91e-25 | 99.4 |
| MS.gene95381.t1 | AT3G53000 | 26.259 | 278 | 172 | 9 | 12 | 272 | 23 | 284 | 3.39e-19 | 85.5 |
| MS.gene95381.t1 | AT2G02350 | 31.915 | 141 | 92 | 3 | 135 | 272 | 26 | 165 | 4.59e-14 | 68.9 |
| MS.gene95381.t1 | AT3G61060 | 23.132 | 281 | 170 | 12 | 12 | 273 | 27 | 280 | 2.20e-13 | 69.3 |
| MS.gene95381.t1 | AT1G12710 | 26.360 | 239 | 156 | 7 | 12 | 236 | 30 | 262 | 6.87e-13 | 67.8 |
| MS.gene95381.t1 | AT3G61060 | 23.050 | 282 | 170 | 13 | 12 | 273 | 27 | 281 | 5.25e-12 | 65.1 |
| MS.gene95381.t1 | AT1G63090 | 26.190 | 210 | 134 | 8 | 9 | 204 | 25 | 227 | 1.20e-11 | 63.9 |
Find 63 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGCCGCATACTGAGTATT+TGG | 0.222961 | 3.3:+47979925 | None:intergenic |
| AAACGGATTTAATGCTTCTA+TGG | 0.269467 | 3.3:+47979827 | None:intergenic |
| CACTTCCAATACTCAATTCA+TGG | 0.291611 | 3.3:-47981614 | MS.gene95381:CDS |
| CATCGTCAACGATGGTAAAA+AGG | 0.292310 | 3.3:-47981509 | MS.gene95381:intron |
| TTACCATCGTTGACGATGAT+AGG | 0.311174 | 3.3:+47981514 | None:intergenic |
| AAGCATTAAATCCGTTTGTT+TGG | 0.314714 | 3.3:-47979821 | MS.gene95381:CDS |
| AGACAAAGCTTAGCAACTTC+AGG | 0.318899 | 3.3:+47979997 | None:intergenic |
| TTCATTATATGCATGATTCT+AGG | 0.323670 | 3.3:-47980858 | MS.gene95381:intron |
| TACGGATTATGTTTCATGTT+TGG | 0.328678 | 3.3:+47979796 | None:intergenic |
| CCAGACAGTGTCGGAATTAG+AGG | 0.354176 | 3.3:+47981648 | None:intergenic |
| AGGCCGCATACTGAGTATTT+GGG | 0.368940 | 3.3:+47979926 | None:intergenic |
| CCTCTAATTCCGACACTGTC+TGG | 0.374563 | 3.3:-47981648 | MS.gene95381:CDS |
| TGACTCCGGTTGACGTTGTC+AGG | 0.383583 | 3.3:-47981702 | MS.gene95381:CDS |
| AGAGGAGTGGTTCGTGGTTG+AGG | 0.402814 | 3.3:-47979654 | MS.gene95381:CDS |
| CGATGATAGGGCGATCAGAT+AGG | 0.418240 | 3.3:+47981527 | None:intergenic |
| AATTCTTCTTCTTTGTTGTA+CGG | 0.423726 | 3.3:+47979778 | None:intergenic |
| AGGGGAGATTTGTTTATTGA+AGG | 0.428143 | 3.3:-47979634 | MS.gene95381:CDS |
| TTATTGAAGGAATAGAAGTT+AGG | 0.429623 | 3.3:-47979621 | MS.gene95381:CDS |
| TACGGACTTCTTCATCTTTG+AGG | 0.429778 | 3.3:+47979689 | None:intergenic |
| GAGGAGTGGTTCGTGGTTGA+GGG | 0.431657 | 3.3:-47979653 | MS.gene95381:CDS |
| CAGATAGGAAAGTCTTAGAT+AGG | 0.437798 | 3.3:+47981671 | None:intergenic |
| ATAATGAATCCACTCTTTCT+CGG | 0.443331 | 3.3:+47980873 | None:intergenic |
| AATTATCTTAAACACGAGAT+AGG | 0.456181 | 3.3:+47979906 | None:intergenic |
| ATTGTGGCGATGCAACCTTC+CGG | 0.457722 | 3.3:+47981736 | None:intergenic |
| ATTGCTTAATTGTCTTACTT+AGG | 0.474152 | 3.3:+47979598 | None:intergenic |
| GAGAGCCTGACAACGTCAAC+CGG | 0.476682 | 3.3:+47981697 | None:intergenic |
| CATGTTTGGATCCAAACAAA+CGG | 0.484730 | 3.3:+47979810 | None:intergenic |
| TCAACCACGAACCACTCCTC+TGG | 0.485635 | 3.3:+47979656 | None:intergenic |
| CGTCCTAGTGTGAGAAGCGA+TGG | 0.489108 | 3.3:-47979751 | MS.gene95381:CDS |
| GACAAAGCTTAGCAACTTCA+GGG | 0.499756 | 3.3:+47979998 | None:intergenic |
| GATGATAGGGCGATCAGATA+GGG | 0.506542 | 3.3:+47981528 | None:intergenic |
| TACCATCGTTGACGATGATA+GGG | 0.510282 | 3.3:+47981515 | None:intergenic |
| TGTCGGAATTAGAGGCAGAT+AGG | 0.523490 | 3.3:+47981656 | None:intergenic |
| TTGTTCTCGCATGAAATCCG+TGG | 0.523569 | 3.3:-47979973 | MS.gene95381:CDS |
| GTAGGACTGTTTGCAATGGA+AGG | 0.526711 | 3.3:+47981571 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.532103 | 3.3:-47979731 | MS.gene95381:CDS |
| ACAATCAATAGTGAGAGATC+TGG | 0.536402 | 3.3:+47980909 | None:intergenic |
| AGAGTCCATGAATTGAGTAT+TGG | 0.538122 | 3.3:+47981609 | None:intergenic |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 3.3:-47979730 | MS.gene95381:CDS |
| CACCCATCGCTTCTCACACT+AGG | 0.543006 | 3.3:+47979748 | None:intergenic |
| TGAGAGATCTGGCAGCAAGC+AGG | 0.545139 | 3.3:+47980920 | None:intergenic |
| TTTAAGATAATTTATGCCCG+TGG | 0.565342 | 3.3:-47979895 | MS.gene95381:CDS |
| TCCTCTGGATAACACACATA+CGG | 0.566781 | 3.3:+47979671 | None:intergenic |
| ATGTGAAGGCCGAGAAAGAG+TGG | 0.568335 | 3.3:-47980882 | MS.gene95381:CDS |
| CGCCCTATCATCGTCAACGA+TGG | 0.574037 | 3.3:-47981517 | MS.gene95381:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 3.3:-47979743 | MS.gene95381:CDS |
| TGTTCTCGCATGAAATCCGT+GGG | 0.579720 | 3.3:-47979972 | MS.gene95381:CDS |
| TTATCCAGAGGAGTGGTTCG+TGG | 0.586146 | 3.3:-47979660 | MS.gene95381:CDS |
| AGGTTCGTTCACATATCCAC+GGG | 0.599651 | 3.3:+47979879 | None:intergenic |
| TTTAGTAGGACTGTTTGCAA+TGG | 0.611519 | 3.3:+47981567 | None:intergenic |
| TATTGATTGTCGTAATGTGA+AGG | 0.614326 | 3.3:-47980896 | MS.gene95381:CDS |
| CAGGTTCGTTCACATATCCA+CGG | 0.617363 | 3.3:+47979878 | None:intergenic |
| AGGAGTGGTTCGTGGTTGAG+GGG | 0.622243 | 3.3:-47979652 | MS.gene95381:CDS |
| GGCCGCATACTGAGTATTTG+GGG | 0.624187 | 3.3:+47979927 | None:intergenic |
| AATACTCTCTCGTATGACTC+CGG | 0.632315 | 3.3:-47981716 | MS.gene95381:CDS |
| TCCGTATGTGTGTTATCCAG+AGG | 0.633374 | 3.3:-47979672 | MS.gene95381:CDS |
| GTCCTAGTGTGAGAAGCGAT+GGG | 0.641166 | 3.3:-47979750 | MS.gene95381:CDS |
| ATGTGTGTTATCCAGAGGAG+TGG | 0.642237 | 3.3:-47979667 | MS.gene95381:CDS |
| GTCCCCAAATACTCAGTATG+CGG | 0.642695 | 3.3:-47979929 | MS.gene95381:CDS |
| AAAACTATTCCAGACAGTGT+CGG | 0.650825 | 3.3:+47981639 | None:intergenic |
| ACACCAACAGAAAAGCTCAC+AGG | 0.661014 | 3.3:+47979859 | None:intergenic |
| CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 3.3:-47979747 | MS.gene95381:CDS |
| AGTCATACGAGAGAGTATTG+TGG | 0.723681 | 3.3:+47981720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAGTTAACTTAAATT+TGG | + | chr3.3:47981085-47981104 | None:intergenic | 15.0% |
| !! | ACAAAAATACTAAAATTAAG+TGG | - | chr3.3:47980354-47980373 | MS.gene95381:intron | 15.0% |
| !! | AGTATAGTTAACTTAAATTT+GGG | + | chr3.3:47981084-47981103 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTGTTTTTGAAA+AGG | + | chr3.3:47980335-47980354 | None:intergenic | 15.0% |
| !! | ATACAGTTTCTATTAACATA+TGG | + | chr3.3:47980395-47980414 | None:intergenic | 20.0% |
| !! | ATGACAATTTCTTGAATATT+AGG | - | chr3.3:47979916-47979935 | MS.gene95381:CDS | 20.0% |
| !! | TAAAACAACTATCTAAAAAC+TGG | + | chr3.3:47980014-47980033 | None:intergenic | 20.0% |
| !! | TTCATTTCAAAGAAAAAATG+AGG | + | chr3.3:47981041-47981060 | None:intergenic | 20.0% |
| !!! | AATTTTCAAACTTTACTTAC+TGG | - | chr3.3:47981235-47981254 | MS.gene95381:intron | 20.0% |
| !!! | ATGATAATTCTTTTTGTTGA+CGG | - | chr3.3:47981147-47981166 | MS.gene95381:intron | 20.0% |
| !!! | CTTTTTGAACAATTTTTTAC+AGG | - | chr3.3:47981364-47981383 | MS.gene95381:intron | 20.0% |
| ! | AAATTTAGAGAAGCTGAAAA+TGG | + | chr3.3:47981016-47981035 | None:intergenic | 25.0% |
| ! | AATTATCTTAAACACGAGAT+AGG | + | chr3.3:47981484-47981503 | None:intergenic | 25.0% |
| ! | AGTTGCAAAGATAAGAATAT+AGG | + | chr3.3:47981346-47981365 | None:intergenic | 25.0% |
| ! | GACGATTATACAAAAGAAAA+AGG | + | chr3.3:47980286-47980305 | None:intergenic | 25.0% |
| ! | GTATAAATACTCAATATGTG+AGG | - | chr3.3:47981289-47981308 | MS.gene95381:intron | 25.0% |
| ! | TAAACAGTACAATCAAAACA+CGG | - | chr3.3:47980309-47980328 | MS.gene95381:intron | 25.0% |
| ! | TAAGTTAATCAAGACACATT+GGG | + | chr3.3:47980626-47980645 | None:intergenic | 25.0% |
| ! | TACTAAAAAAGCTCTCTATA+TGG | - | chr3.3:47979836-47979855 | MS.gene95381:CDS | 25.0% |
| ! | TTAAGTTAATCAAGACACAT+TGG | + | chr3.3:47980627-47980646 | None:intergenic | 25.0% |
| ! | TTATACAAGTGTTTATACAC+TGG | + | chr3.3:47981275-47981294 | None:intergenic | 25.0% |
| ! | TTATTGAAGGAATAGAAGTT+AGG | - | chr3.3:47981766-47981785 | MS.gene95381:CDS | 25.0% |
| ! | TTCATTATATGCATGATTCT+AGG | - | chr3.3:47980529-47980548 | MS.gene95381:intron | 25.0% |
| ! | TTTAAGAATGTAGTTCGATT+TGG | - | chr3.3:47981207-47981226 | MS.gene95381:intron | 25.0% |
| ! | TTTCAATTTCGTAGAAAAAG+TGG | - | chr3.3:47980432-47980451 | MS.gene95381:intron | 25.0% |
| !! | AATTCTTCTTCTTTGTTGTA+CGG | + | chr3.3:47981612-47981631 | None:intergenic | 25.0% |
| !! | CAAAAGAATAAAAGCTTTTG+AGG | - | chr3.3:47979623-47979642 | MS.gene95381:CDS | 25.0% |
| !!! | AAAAAGTGTTAATAATCCCA+CGG | + | chr3.3:47981434-47981453 | None:intergenic | 25.0% |
| !!! | ATATAGAGAGCTTTTTTAGT+AGG | + | chr3.3:47979837-47979856 | None:intergenic | 25.0% |
| !!! | ATCACACTCAACATTTTTTA+TGG | - | chr3.3:47980703-47980722 | MS.gene95381:intron | 25.0% |
| !!! | TCACACTCAACATTTTTTAT+GGG | - | chr3.3:47980704-47980723 | MS.gene95381:intron | 25.0% |
| !!! | TCTTTGAAATGAATACTTGT+TGG | - | chr3.3:47981048-47981067 | MS.gene95381:intron | 25.0% |
| AAGCATTAAATCCGTTTGTT+TGG | - | chr3.3:47981566-47981585 | MS.gene95381:CDS | 30.0% | |
| AATACTCAATATGTGAGGAT+CGG | - | chr3.3:47981294-47981313 | MS.gene95381:intron | 30.0% | |
| ATAATGAATCCACTCTTTCT+CGG | + | chr3.3:47980517-47980536 | None:intergenic | 30.0% | |
| GTCTAATGAGTAGAATTTAC+TGG | - | chr3.3:47980563-47980582 | MS.gene95381:intron | 30.0% | |
| TTATCAGTTACTACTGTTCA+GGG | - | chr3.3:47979944-47979963 | MS.gene95381:CDS | 30.0% | |
| TTGTTTATAGTTGAGACAAG+TGG | + | chr3.3:47980870-47980889 | None:intergenic | 30.0% | |
| TTTGAATTGAGGGATTAAGA+AGG | + | chr3.3:47980193-47980212 | None:intergenic | 30.0% | |
| ! | AAACGGATTTAATGCTTCTA+TGG | + | chr3.3:47981563-47981582 | None:intergenic | 30.0% |
| ! | GGAGAATATTTTCACTCATA+CGG | + | chr3.3:47980995-47981014 | None:intergenic | 30.0% |
| ! | TACGGATTATGTTTCATGTT+TGG | + | chr3.3:47981594-47981613 | None:intergenic | 30.0% |
| ! | TACTGGTTAATGTGAATAAG+TGG | - | chr3.3:47980580-47980599 | MS.gene95381:intron | 30.0% |
| ! | TATTGATTGTCGTAATGTGA+AGG | - | chr3.3:47980491-47980510 | MS.gene95381:intron | 30.0% |
| ! | TATTTCCTGCATCTTTTGAT+TGG | - | chr3.3:47980739-47980758 | MS.gene95381:intron | 30.0% |
| ! | TGTTTATACACTGGTAATGT+AGG | + | chr3.3:47981266-47981285 | None:intergenic | 30.0% |
| ! | TTTAAGATAATTTATGCCCG+TGG | - | chr3.3:47981492-47981511 | MS.gene95381:intron | 30.0% |
| !! | TCTAATTTTGAGAGAAGCTA+TGG | + | chr3.3:47980838-47980857 | None:intergenic | 30.0% |
| AAAACTATTCCAGACAGTGT+CGG | + | chr3.3:47979751-47979770 | None:intergenic | 35.0% | |
| AATTGAGGGATTAAGAAGGA+AGG | + | chr3.3:47980189-47980208 | None:intergenic | 35.0% | |
| ACAATCAATAGTGAGAGATC+TGG | + | chr3.3:47980481-47980500 | None:intergenic | 35.0% | |
| AGAGTCCATGAATTGAGTAT+TGG | + | chr3.3:47979781-47979800 | None:intergenic | 35.0% | |
| CACTTCCAATACTCAATTCA+TGG | - | chr3.3:47979773-47979792 | MS.gene95381:CDS | 35.0% | |
| CAGATAGGAAAGTCTTAGAT+AGG | + | chr3.3:47979719-47979738 | None:intergenic | 35.0% | |
| CATGTTTGGATCCAAACAAA+CGG | + | chr3.3:47981580-47981599 | None:intergenic | 35.0% | |
| GTTATCAGTTACTACTGTTC+AGG | - | chr3.3:47979943-47979962 | MS.gene95381:CDS | 35.0% | |
| TCAAACCTCAATATCAGTGA+TGG | - | chr3.3:47981110-47981129 | MS.gene95381:intron | 35.0% | |
| TTACTTGTAGTTGAGACCAA+GGG | - | chr3.3:47980961-47980980 | MS.gene95381:CDS | 35.0% | |
| TTTACTTGTAGTTGAGACCA+AGG | - | chr3.3:47980960-47980979 | MS.gene95381:CDS | 35.0% | |
| TTTAGTAGGACTGTTTGCAA+TGG | + | chr3.3:47979823-47979842 | None:intergenic | 35.0% | |
| ! | AGGGGAGATTTGTTTATTGA+AGG | - | chr3.3:47981753-47981772 | MS.gene95381:CDS | 35.0% |
| ! | CAAAGGTGTGTTTGAATTGA+GGG | + | chr3.3:47980203-47980222 | None:intergenic | 35.0% |
| !! | AAAAGCTTTTGAGGAATTGC+CGG | - | chr3.3:47979632-47979651 | MS.gene95381:CDS | 35.0% |
| AACCTCAATATCAGTGATGG+TGG | - | chr3.3:47981113-47981132 | MS.gene95381:intron | 40.0% | |
| AATACTCTCTCGTATGACTC+CGG | - | chr3.3:47979671-47979690 | MS.gene95381:CDS | 40.0% | |
| ACCGGAAAATTTCCTTAAGG+AGG | + | chr3.3:47980774-47980793 | None:intergenic | 40.0% | |
| AGACAAAGCTTAGCAACTTC+AGG | + | chr3.3:47981393-47981412 | None:intergenic | 40.0% | |
| CAAGACCAATCAAAAGATGC+AGG | + | chr3.3:47980747-47980766 | None:intergenic | 40.0% | |
| CATCGTCAACGATGGTAAAA+AGG | - | chr3.3:47979878-47979897 | MS.gene95381:CDS | 40.0% | |
| CCGGAAAATTTCCTTAAGGA+GGG | + | chr3.3:47980773-47980792 | None:intergenic | 40.0% | |
| CCTCAATTCAAACACACCTT+TGG | - | chr3.3:47980201-47980220 | MS.gene95381:intron | 40.0% | |
| CGGAAAATTTCCTTAAGGAG+GGG | + | chr3.3:47980772-47980791 | None:intergenic | 40.0% | |
| GAAACACACCAATACTCCAA+AGG | + | chr3.3:47980220-47980239 | None:intergenic | 40.0% | |
| GACAAAGCTTAGCAACTTCA+GGG | + | chr3.3:47981392-47981411 | None:intergenic | 40.0% | |
| GCAACCGGAAAATTTCCTTA+AGG | + | chr3.3:47980777-47980796 | None:intergenic | 40.0% | |
| TACCATCGTTGACGATGATA+GGG | + | chr3.3:47979875-47979894 | None:intergenic | 40.0% | |
| TACGGACTTCTTCATCTTTG+AGG | + | chr3.3:47981701-47981720 | None:intergenic | 40.0% | |
| TCCTCTGGATAACACACATA+CGG | + | chr3.3:47981719-47981738 | None:intergenic | 40.0% | |
| TTACCATCGTTGACGATGAT+AGG | + | chr3.3:47979876-47979895 | None:intergenic | 40.0% | |
| ! | CCAAAGGTGTGTTTGAATTG+AGG | + | chr3.3:47980204-47980223 | None:intergenic | 40.0% |
| ! | CCCTCCTTAAGGAAATTTTC+CGG | - | chr3.3:47980770-47980789 | MS.gene95381:intron | 40.0% |
| !! | AGTCATACGAGAGAGTATTG+TGG | + | chr3.3:47979670-47979689 | None:intergenic | 40.0% |
| !! | CAAACACACCTTTGGAGTAT+TGG | - | chr3.3:47980209-47980228 | MS.gene95381:intron | 40.0% |
| ACACCAACAGAAAAGCTCAC+AGG | + | chr3.3:47981531-47981550 | None:intergenic | 45.0% | |
| AGGCCGCATACTGAGTATTT+GGG | + | chr3.3:47981464-47981483 | None:intergenic | 45.0% | |
| AGGTTCGTTCACATATCCAC+GGG | + | chr3.3:47981511-47981530 | None:intergenic | 45.0% | |
| ATGTGTGTTATCCAGAGGAG+TGG | - | chr3.3:47981720-47981739 | MS.gene95381:CDS | 45.0% | |
| CAGGTTCGTTCACATATCCA+CGG | + | chr3.3:47981512-47981531 | None:intergenic | 45.0% | |
| GACCACCATCACTGATATTG+AGG | + | chr3.3:47981118-47981137 | None:intergenic | 45.0% | |
| GATGATAGGGCGATCAGATA+GGG | + | chr3.3:47979862-47979881 | None:intergenic | 45.0% | |
| GTAGGACTGTTTGCAATGGA+AGG | + | chr3.3:47979819-47979838 | None:intergenic | 45.0% | |
| GTCCCCAAATACTCAGTATG+CGG | - | chr3.3:47981458-47981477 | MS.gene95381:intron | 45.0% | |
| TAGGCCGCATACTGAGTATT+TGG | + | chr3.3:47981465-47981484 | None:intergenic | 45.0% | |
| TCATACGGTATGAACTCCCT+TGG | + | chr3.3:47980980-47980999 | None:intergenic | 45.0% | |
| TCCGTATGTGTGTTATCCAG+AGG | - | chr3.3:47981715-47981734 | MS.gene95381:CDS | 45.0% | |
| TGTCGGAATTAGAGGCAGAT+AGG | + | chr3.3:47979734-47979753 | None:intergenic | 45.0% | |
| TGTTCTCGCATGAAATCCGT+GGG | - | chr3.3:47981415-47981434 | MS.gene95381:intron | 45.0% | |
| TTGTTCTCGCATGAAATCCG+TGG | - | chr3.3:47981414-47981433 | MS.gene95381:intron | 45.0% | |
| TTTCCGGTTGCTGCTAAATG+CGG | - | chr3.3:47980786-47980805 | MS.gene95381:intron | 45.0% | |
| ! | GAACCTGTGAGCTTTTCTGT+TGG | - | chr3.3:47981525-47981544 | MS.gene95381:CDS | 45.0% |
| !!! | AGCTTTTCTGTTGGTGTCGA+TGG | - | chr3.3:47981534-47981553 | MS.gene95381:CDS | 45.0% |
| !!! | TTTTCTGTTGGTGTCGATGG+TGG | - | chr3.3:47981537-47981556 | MS.gene95381:CDS | 45.0% |
| ATGTGAAGGCCGAGAAAGAG+TGG | - | chr3.3:47980505-47980524 | MS.gene95381:intron | 50.0% | |
| ATTGTGGCGATGCAACCTTC+CGG | + | chr3.3:47979654-47979673 | None:intergenic | 50.0% | |
| CCTCTAATTCCGACACTGTC+TGG | - | chr3.3:47979739-47979758 | MS.gene95381:CDS | 50.0% | |
| CGATGATAGGGCGATCAGAT+AGG | + | chr3.3:47979863-47979882 | None:intergenic | 50.0% | |
| GGCCGCATACTGAGTATTTG+GGG | + | chr3.3:47981463-47981482 | None:intergenic | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | - | chr3.3:47981657-47981676 | MS.gene95381:CDS | 50.0% | |
| GTCCTAGTGTGAGAAGCGAT+GGG | - | chr3.3:47981637-47981656 | MS.gene95381:CDS | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | - | chr3.3:47981656-47981675 | MS.gene95381:CDS | 50.0% | |
| TTATCCAGAGGAGTGGTTCG+TGG | - | chr3.3:47981727-47981746 | MS.gene95381:CDS | 50.0% | |
| ! | CCAGACAGTGTCGGAATTAG+AGG | + | chr3.3:47979742-47979761 | None:intergenic | 50.0% |
| !! | GCTTTTGAGGAATTGCCGGA+AGG | - | chr3.3:47979636-47979655 | MS.gene95381:CDS | 50.0% |
| !! | TGGTCTTGTTCCCCTCCTTA+AGG | - | chr3.3:47980759-47980778 | MS.gene95381:intron | 50.0% |
| AGAGGAGTGGTTCGTGGTTG+AGG | - | chr3.3:47981733-47981752 | MS.gene95381:CDS | 55.0% | |
| AGGAGTGGTTCGTGGTTGAG+GGG | - | chr3.3:47981735-47981754 | MS.gene95381:CDS | 55.0% | |
| CACCCATCGCTTCTCACACT+AGG | + | chr3.3:47981642-47981661 | None:intergenic | 55.0% | |
| CGCCCTATCATCGTCAACGA+TGG | - | chr3.3:47979870-47979889 | MS.gene95381:CDS | 55.0% | |
| CGTCCTAGTGTGAGAAGCGA+TGG | - | chr3.3:47981636-47981655 | MS.gene95381:CDS | 55.0% | |
| CTAGTGTGAGAAGCGATGGG+TGG | - | chr3.3:47981640-47981659 | MS.gene95381:CDS | 55.0% | |
| GAGAGCCTGACAACGTCAAC+CGG | + | chr3.3:47979693-47979712 | None:intergenic | 55.0% | |
| GAGGAGTGGTTCGTGGTTGA+GGG | - | chr3.3:47981734-47981753 | MS.gene95381:CDS | 55.0% | |
| GCACCGCATTTAGCAGCAAC+CGG | + | chr3.3:47980792-47980811 | None:intergenic | 55.0% | |
| TCAACCACGAACCACTCCTC+TGG | + | chr3.3:47981734-47981753 | None:intergenic | 55.0% | |
| TGACTCCGGTTGACGTTGTC+AGG | - | chr3.3:47979685-47979704 | MS.gene95381:CDS | 55.0% | |
| TGAGAGATCTGGCAGCAAGC+AGG | + | chr3.3:47980470-47980489 | None:intergenic | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr3.3:47981644-47981663 | MS.gene95381:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 47979612 | 47981797 | 47979612 | ID=MS.gene95381 |
| chr3.3 | mRNA | 47979612 | 47981797 | 47979612 | ID=MS.gene95381.t1;Parent=MS.gene95381 |
| chr3.3 | exon | 47981510 | 47981797 | 47981510 | ID=MS.gene95381.t1.exon1;Parent=MS.gene95381.t1 |
| chr3.3 | CDS | 47981510 | 47981797 | 47981510 | ID=cds.MS.gene95381.t1;Parent=MS.gene95381.t1 |
| chr3.3 | exon | 47980859 | 47980980 | 47980859 | ID=MS.gene95381.t1.exon2;Parent=MS.gene95381.t1 |
| chr3.3 | CDS | 47980859 | 47980980 | 47980859 | ID=cds.MS.gene95381.t1;Parent=MS.gene95381.t1 |
| chr3.3 | exon | 47979612 | 47980023 | 47979612 | ID=MS.gene95381.t1.exon3;Parent=MS.gene95381.t1 |
| chr3.3 | CDS | 47979612 | 47980023 | 47979612 | ID=cds.MS.gene95381.t1;Parent=MS.gene95381.t1 |
| Gene Sequence |
| Protein sequence |
