AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74881

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74881.t1 MTR_1g079410 91.273 275 23 1 1 275 1 274 0.0 509
MS.gene74881.t1 MTR_1g079400 71.972 289 50 2 2 274 6 279 1.45e-132 376
MS.gene74881.t1 MTR_1g079260 59.712 278 98 4 6 275 2 273 1.35e-109 318
MS.gene74881.t1 MTR_1g079370 60.448 268 99 3 8 274 4 265 2.47e-109 317
MS.gene74881.t1 MTR_1g100597 59.636 275 95 4 9 274 5 272 6.67e-105 306
MS.gene74881.t1 MTR_1g079380 58.148 270 106 3 6 274 2 265 7.33e-102 299
MS.gene74881.t1 MTR_1g079460 59.176 267 105 3 9 275 5 267 3.21e-101 296
MS.gene74881.t1 MTR_1g079200 55.351 271 105 5 9 274 5 264 4.09e-94 278
MS.gene74881.t1 MTR_1g079180 56.667 270 104 6 9 274 5 265 1.55e-93 277
MS.gene74881.t1 MTR_1g079230 55.197 279 108 5 6 274 2 273 1.81e-93 277
MS.gene74881.t1 MTR_1g079850 52.113 284 117 5 7 275 3 282 1.13e-86 260
MS.gene74881.t1 MTR_3g452600 52.809 267 117 4 8 274 10 267 5.63e-85 255
MS.gene74881.t1 MTR_1g100613 56.504 246 89 4 24 257 5 244 2.15e-84 253
MS.gene74881.t1 MTR_1g079140 48.197 305 121 4 2 274 7 306 4.56e-84 254
MS.gene74881.t1 MTR_1g026510 47.735 287 129 8 6 275 2 284 5.67e-78 238
MS.gene74881.t1 MTR_3g006850 47.573 309 118 8 5 275 14 316 2.86e-77 237
MS.gene74881.t1 MTR_2g079100 50.923 271 110 6 7 271 8 261 1.03e-76 234
MS.gene74881.t1 MTR_1g079250 49.291 282 125 6 7 275 3 279 4.47e-76 234
MS.gene74881.t1 MTR_3g450990 46.690 287 120 6 8 274 10 283 1.36e-73 227
MS.gene74881.t1 MTR_7g112550 44.251 287 134 9 6 274 5 283 5.19e-70 218
MS.gene74881.t1 MTR_1g083580 42.049 283 143 7 6 274 6 281 1.50e-69 216
MS.gene74881.t1 MTR_1g079350 47.101 276 137 5 6 274 2 275 5.13e-67 209
MS.gene74881.t1 MTR_1g079340 44.178 292 139 7 3 274 38 325 1.85e-59 192
MS.gene74881.t1 MTR_7g112560 40.672 268 147 6 8 274 1 257 8.45e-58 186
MS.gene74881.t1 MTR_7g096300 49.219 256 108 8 6 254 2 242 4.06e-57 195
MS.gene74881.t1 MTR_1g078470 53.804 184 77 5 93 274 7 184 8.57e-52 167
MS.gene74881.t1 MTR_4g023570 37.687 268 135 4 8 274 1 237 8.56e-51 167
MS.gene74881.t1 MTR_1g079130 44.560 193 76 4 109 274 1 189 6.05e-43 145
MS.gene74881.t1 MTR_1g079240 46.409 181 83 4 95 274 12 179 2.40e-38 133
MS.gene74881.t1 MTR_1g076870 50.735 136 48 2 136 254 2 135 2.20e-32 116
MS.gene74881.t1 MTR_1g079350 43.750 160 78 4 6 160 2 154 2.24e-31 116
MS.gene74881.t1 MTR_7g096310 47.934 121 58 3 75 192 44 162 2.79e-26 101
MS.gene74881.t1 MTR_7g103380 26.523 279 176 7 11 275 22 285 2.79e-24 99.4
MS.gene74881.t1 MTR_1g078460 55.056 89 36 1 7 95 66 150 1.72e-23 93.6
MS.gene74881.t1 MTR_2g042540 47.573 103 52 1 9 111 5 105 2.73e-23 92.4
MS.gene74881.t1 MTR_1g079210 47.581 124 50 2 138 248 8 129 3.14e-22 90.1
MS.gene74881.t1 MTR_4g083970 28.042 189 114 3 88 274 122 290 6.73e-21 90.1
MS.gene74881.t1 MTR_3g058640 49.515 103 49 2 136 238 7 106 3.90e-20 83.6
MS.gene74881.t1 MTR_0002s0020 33.784 148 94 2 11 155 25 171 2.18e-19 85.9
MS.gene74881.t1 MTR_1g101390 35.417 144 90 2 11 154 31 171 7.97e-19 84.3
MS.gene74881.t1 MTR_4g102770 35.417 144 91 2 11 154 22 163 1.10e-18 84.0
MS.gene74881.t1 MTR_0113s0040 30.667 150 101 2 5 154 19 165 6.71e-18 81.6
MS.gene74881.t1 MTR_5g010800 31.126 151 99 3 6 155 15 161 3.66e-17 79.7
MS.gene74881.t1 MTR_1g079220 49.275 69 32 2 173 241 1 66 3.87e-12 61.2
MS.gene74881.t1 MTR_1g079390 68.000 50 14 2 220 269 8 55 1.24e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74881.t1 AT2G02360 44.245 278 138 5 1 275 7 270 6.49e-75 230
MS.gene74881.t1 AT2G02230 39.490 314 137 8 6 275 30 334 2.64e-72 225
MS.gene74881.t1 AT2G02250 44.118 272 139 6 6 275 45 305 2.17e-70 219
MS.gene74881.t1 AT2G02340 43.223 273 145 5 6 273 34 301 1.82e-66 209
MS.gene74881.t1 AT2G02240 43.911 271 140 4 6 275 59 318 2.45e-66 209
MS.gene74881.t1 AT1G80110 44.318 264 134 6 11 273 4 255 9.07e-64 201
MS.gene74881.t1 AT1G09155 41.844 282 142 7 11 274 3 280 1.00e-59 191
MS.gene74881.t1 AT2G02350 39.051 274 152 5 6 275 22 284 1.06e-56 184
MS.gene74881.t1 AT1G56240 41.281 281 143 7 11 273 4 280 1.03e-54 178
MS.gene74881.t1 AT1G56250 42.199 282 141 8 11 274 4 281 5.71e-54 176
MS.gene74881.t1 AT2G02320 40.146 274 139 7 11 275 43 300 6.01e-51 169
MS.gene74881.t1 AT2G02310 36.397 272 160 5 6 274 43 304 6.70e-48 162
MS.gene74881.t1 AT5G24560 50.340 147 66 1 11 157 6 145 3.62e-45 151
MS.gene74881.t1 AT2G02300 36.101 277 142 9 6 274 32 281 3.42e-42 146
MS.gene74881.t1 AT3G53000 27.240 279 169 8 11 273 24 284 7.73e-23 95.5
MS.gene74881.t1 AT2G02350 33.918 171 105 4 109 275 1 167 2.59e-22 91.3
MS.gene74881.t1 AT3G61060 34.507 142 90 2 11 152 28 166 5.46e-19 85.1
MS.gene74881.t1 AT3G61060 33.099 142 93 1 11 152 28 167 6.15e-18 82.0
MS.gene74881.t1 AT4G19850 32.240 183 95 6 100 274 57 218 1.08e-17 80.1
MS.gene74881.t1 AT4G19850 32.240 183 95 6 100 274 15 176 1.21e-17 79.0
MS.gene74881.t1 AT5G52120 33.775 151 95 2 8 154 21 170 1.62e-17 80.9
MS.gene74881.t1 AT1G12710 33.775 151 96 2 5 155 25 171 1.77e-17 80.9
MS.gene74881.t1 AT1G63090 33.793 145 92 2 11 155 29 169 6.64e-16 76.3
MS.gene74881.t1 AT4G19840 26.857 175 108 3 103 275 90 246 1.88e-13 68.9
MS.gene74881.t1 AT1G65390 27.684 177 105 4 102 274 253 410 1.98e-13 70.1
MS.gene74881.t1 AT1G33920 27.322 183 94 5 104 274 9 164 3.06e-12 63.9
MS.gene74881.t1 AT1G12710 32.331 133 86 2 5 137 25 153 1.53e-11 64.3
MS.gene74881.t1 AT2G26820 23.404 188 120 4 95 273 289 461 1.79e-11 64.3
MS.gene74881.t1 AT2G26820 24.855 173 111 3 105 273 320 477 2.34e-11 63.9

Find 80 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGCTGGTTTGAAATTTA+TGG 0.100064 1.1:-59047651 MS.gene74881:CDS
AGTGAGAAGTGATGGATTTC+TGG 0.210364 1.1:-59047412 MS.gene74881:CDS
AATCCATCACTTCTCACTTT+TGG 0.235555 1.1:+59047417 None:intergenic
CGTTCTCTATCATCATAGTC+TGG 0.266145 1.1:+59047468 None:intergenic
CATAATCAACAATGGTAAAA+AGG 0.269618 1.1:-59048033 MS.gene74881:intron
TCTCAACAACTTCATCTTCT+AGG 0.271024 1.1:+59047358 None:intergenic
TACGAAGTCTAGCAACTTCT+TGG 0.288075 1.1:+59047676 None:intergenic
GGGTGACACTCCTTGCTATT+GGG 0.294051 1.1:-59047829 MS.gene74881:CDS
AACTCGATCCTTCACTTCTT+AGG 0.308997 1.1:+59047267 None:intergenic
CCGCTGAATCAGATATTGTT+TGG 0.317627 1.1:-59048175 MS.gene74881:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.1:-59047381 MS.gene74881:CDS
TCTGCTGGTTTGAAATTTAT+GGG 0.342537 1.1:-59047650 MS.gene74881:CDS
GGGGTGACACTCCTTGCTAT+TGG 0.354208 1.1:-59047830 MS.gene74881:CDS
TTTACCATTGTTGATTATGA+TGG 0.358804 1.1:+59048037 None:intergenic
AGAGAAACGGAGGGGTAAAA+AGG 0.358956 1.1:-59047889 MS.gene74881:CDS
AGCGGCAGAACGAAAGCATT+TGG 0.361684 1.1:+59048193 None:intergenic
AGTGAGATATAGAGACTTCT+TGG 0.362866 1.1:+59048073 None:intergenic
GATGGGTGTACTTGAAATAA+AGG 0.367176 1.1:-59047337 MS.gene74881:CDS
CGCTGAATCAGATATTGTTT+GGG 0.389539 1.1:-59048174 MS.gene74881:CDS
CTAGACTTCGTACGGTCTGC+TGG 0.413537 1.1:-59047665 MS.gene74881:CDS
CTAGAGATCTCTCCATTACT+TGG 0.414237 1.1:-59047851 MS.gene74881:CDS
AAGTTAACTGTGGTTGTACT+TGG 0.426485 1.1:-59047531 MS.gene74881:CDS
AAAGGTGGTTTCATTCTTGA+AGG 0.434634 1.1:-59047303 MS.gene74881:CDS
TGGGTCCAACCAAACATTCT+TGG 0.440943 1.1:+59047488 None:intergenic
ACACTCCTTGCTATTGGGAT+TGG 0.441059 1.1:-59047824 MS.gene74881:CDS
AAGCACGATAGAGGCTTTGC+CGG 0.461575 1.1:-59048282 MS.gene74881:CDS
AGCTACGTATTGAGTATTTG+AGG 0.465011 1.1:+59047605 None:intergenic
GTGTATCTACCAAGAATGTT+TGG 0.479208 1.1:-59047497 MS.gene74881:CDS
TAGAGATCTCTCCATTACTT+GGG 0.480318 1.1:-59047850 MS.gene74881:CDS
AGAGCTTTCAATTAGAGAAA+CGG 0.486012 1.1:-59047902 MS.gene74881:CDS
AGAAATGATTGAGATCAAAT+CGG 0.495855 1.1:+59048136 None:intergenic
AGTTGTATGCGACAATATCT+TGG 0.496653 1.1:+59048247 None:intergenic
TTACCATTGTTGATTATGAT+GGG 0.511911 1.1:+59048038 None:intergenic
GTTCTCTATCATCATAGTCT+GGG 0.511952 1.1:+59047469 None:intergenic
AAGTACAACCACAGTTAACT+TGG 0.517516 1.1:+59047533 None:intergenic
CGTCCAAAAGTGAGAAGTGA+TGG 0.519993 1.1:-59047420 MS.gene74881:CDS
GAGATATAGAGACTTCTTGG+AGG 0.521963 1.1:+59048076 None:intergenic
TAAACAGTGAGGACGCAGAC+TGG 0.534129 1.1:+59048108 None:intergenic
ATCTGACCTGGACTCTGGTA+GGG 0.540951 1.1:+59047797 None:intergenic
ATGATTGAGATCAAATCGGA+TGG 0.542290 1.1:+59048140 None:intergenic
TAGAGACTTCTTGGAGGGAG+AGG 0.543893 1.1:+59048082 None:intergenic
AGGAGTGTCACCCCAAGTAA+TGG 0.550622 1.1:+59047839 None:intergenic
ATGGGTGTACTTGAAATAAA+GGG 0.553967 1.1:-59047336 MS.gene74881:CDS
ATCTACCAAGAATGTTTGGT+TGG 0.558152 1.1:-59047493 MS.gene74881:CDS
ATCTTGGCAATGCATCCCTC+CGG 0.558404 1.1:+59048263 None:intergenic
GATCTGACCTGGACTCTGGT+AGG 0.558734 1.1:+59047796 None:intergenic
ACGATAGAGGCTTTGCCGGA+GGG 0.562687 1.1:-59048278 MS.gene74881:CDS
GGATTTCTGGAGATTGAGAT+GGG 0.566350 1.1:-59047399 MS.gene74881:CDS
ATAAGATCTGACCTGGACTC+TGG 0.567399 1.1:+59047792 None:intergenic
AAACAGTGAGGACGCAGACT+GGG 0.567855 1.1:+59048109 None:intergenic
CATTGTTGATTATGATGGGA+TGG 0.574289 1.1:+59048042 None:intergenic
TGGATTTCTGGAGATTGAGA+TGG 0.574304 1.1:-59047400 MS.gene74881:CDS
GGATAACCCTACCAGAGTCC+AGG 0.575507 1.1:-59047803 MS.gene74881:intron
AGAAGTTGCTAGACTTCGTA+CGG 0.575916 1.1:-59047673 MS.gene74881:CDS
GTTGTACTTGGAGACCAAGC+TGG 0.582572 1.1:-59047519 MS.gene74881:CDS
AAATAAGACCTAAGAAGTGA+AGG 0.584107 1.1:-59047275 None:intergenic
AGAAGATGAAGTTGTTGAGA+TGG 0.589182 1.1:-59047355 MS.gene74881:CDS
GAACGAAATGACGAGTTCCA+AGG 0.592057 1.1:-59047450 MS.gene74881:CDS
CACGATAGAGGCTTTGCCGG+AGG 0.594118 1.1:-59048279 MS.gene74881:CDS
AGACTTCTTGGAGGGAGAGG+TGG 0.596099 1.1:+59048085 None:intergenic
GAAGATGAAGTTGTTGAGAT+GGG 0.599122 1.1:-59047354 MS.gene74881:CDS
ACAACCACAGTTAACTTGGT+AGG 0.604161 1.1:+59047537 None:intergenic
GACAACCTACATGAATCGAC+TGG 0.605626 1.1:+59048224 None:intergenic
CAACTCCAGTCGATTCATGT+AGG 0.606138 1.1:-59048229 MS.gene74881:CDS
AGGAAGATCTTCAAAACGAT+AGG 0.608932 1.1:+59047557 None:intergenic
AGATATAGAGACTTCTTGGA+GGG 0.617472 1.1:+59048077 None:intergenic
TCTTGGTAGATACACCAGCT+TGG 0.627426 1.1:+59047505 None:intergenic
CATCCCATCATAATCAACAA+TGG 0.630900 1.1:-59048041 MS.gene74881:CDS
AGAGATCTCTCCATTACTTG+GGG 0.633491 1.1:-59047849 MS.gene74881:CDS
GTTATCCAATCCCAATAGCA+AGG 0.634767 1.1:+59047819 None:intergenic
CCAAACAATATCTGATTCAG+CGG 0.635686 1.1:+59048175 None:intergenic
CTTTCAATTAGAGAAACGGA+GGG 0.636149 1.1:-59047898 MS.gene74881:CDS
ATAAAGGGTGGTCAAAACAA+AGG 0.642537 1.1:-59047321 MS.gene74881:CDS
TGATTGAGATCAAATCGGAT+GGG 0.645104 1.1:+59048141 None:intergenic
GCTTTCAATTAGAGAAACGG+AGG 0.650324 1.1:-59047899 MS.gene74881:CDS
AAGGGTGGTCAAAACAAAGG+TGG 0.659675 1.1:-59047318 MS.gene74881:CDS
TCTTCCTACCAAGTTAACTG+TGG 0.669764 1.1:-59047541 MS.gene74881:CDS
TTTCAATTAGAGAAACGGAG+GGG 0.684095 1.1:-59047897 MS.gene74881:CDS
GGGAGAGGTGGTAAACAGTG+AGG 0.699879 1.1:+59048097 None:intergenic
GGTGTACTTGAAATAAAGGG+TGG 0.703552 1.1:-59047333 MS.gene74881:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAACTTGACTCTTTATTA+TGG - chr1.1:59047635-59047654 MS.gene74881:CDS 20.0%
! AGAAATGATTGAGATCAAAT+CGG + chr1.1:59047441-59047460 None:intergenic 25.0%
! CATAATCAACAATGGTAAAA+AGG - chr1.1:59047541-59047560 MS.gene74881:CDS 25.0%
!! TTACCATTGTTGATTATGAT+GGG + chr1.1:59047539-59047558 None:intergenic 25.0%
!! TTTACCATTGTTGATTATGA+TGG + chr1.1:59047540-59047559 None:intergenic 25.0%
AATCTAAATAAGATCTGACC+TGG + chr1.1:59047792-59047811 None:intergenic 30.0%
AGAGCTTTCAATTAGAGAAA+CGG - chr1.1:59047672-59047691 MS.gene74881:CDS 30.0%
ATGGGTGTACTTGAAATAAA+GGG - chr1.1:59048238-59048257 MS.gene74881:CDS 30.0%
CAAAAATCGACAACTTGATT+TGG + chr1.1:59047585-59047604 None:intergenic 30.0%
!! CATTTACTGCTGATTGATTT+TGG + chr1.1:59047851-59047870 None:intergenic 30.0%
!! TCTGCTGGTTTGAAATTTAT+GGG - chr1.1:59047924-59047943 MS.gene74881:intron 30.0%
!! TTGAAAGCTCTGAAATTTAG+CGG + chr1.1:59047663-59047682 None:intergenic 30.0%
AAAGGTGGTTTCATTCTTGA+AGG - chr1.1:59048271-59048290 MS.gene74881:CDS 35.0%
AAGTACAACCACAGTTAACT+TGG + chr1.1:59048044-59048063 None:intergenic 35.0%
AAGTTAACTGTGGTTGTACT+TGG - chr1.1:59048043-59048062 MS.gene74881:CDS 35.0%
AGAAGATGAAGTTGTTGAGA+TGG - chr1.1:59048219-59048238 MS.gene74881:CDS 35.0%
AGATATAGAGACTTCTTGGA+GGG + chr1.1:59047500-59047519 None:intergenic 35.0%
AGCTACGTATTGAGTATTTG+AGG + chr1.1:59047972-59047991 None:intergenic 35.0%
AGGAAGATCTTCAAAACGAT+AGG + chr1.1:59048020-59048039 None:intergenic 35.0%
AGTGAGATATAGAGACTTCT+TGG + chr1.1:59047504-59047523 None:intergenic 35.0%
AGTTGTATGCGACAATATCT+TGG + chr1.1:59047330-59047349 None:intergenic 35.0%
ATAAAGGGTGGTCAAAACAA+AGG - chr1.1:59048253-59048272 MS.gene74881:CDS 35.0%
ATCTACCAAGAATGTTTGGT+TGG - chr1.1:59048081-59048100 MS.gene74881:CDS 35.0%
ATGATTGAGATCAAATCGGA+TGG + chr1.1:59047437-59047456 None:intergenic 35.0%
CATCCCATCATAATCAACAA+TGG - chr1.1:59047533-59047552 MS.gene74881:CDS 35.0%
CCAAACAATATCTGATTCAG+CGG + chr1.1:59047402-59047421 None:intergenic 35.0%
CGCTGAATCAGATATTGTTT+GGG - chr1.1:59047400-59047419 MS.gene74881:CDS 35.0%
CTTTCAATTAGAGAAACGGA+GGG - chr1.1:59047676-59047695 MS.gene74881:CDS 35.0%
GAAGATGAAGTTGTTGAGAT+GGG - chr1.1:59048220-59048239 MS.gene74881:CDS 35.0%
GATGGGTGTACTTGAAATAA+AGG - chr1.1:59048237-59048256 MS.gene74881:CDS 35.0%
GTGTATCTACCAAGAATGTT+TGG - chr1.1:59048077-59048096 MS.gene74881:CDS 35.0%
GTTCTCTATCATCATAGTCT+GGG + chr1.1:59048108-59048127 None:intergenic 35.0%
TAGAGATCTCTCCATTACTT+GGG - chr1.1:59047724-59047743 MS.gene74881:intron 35.0%
TCTCAACAACTTCATCTTCT+AGG + chr1.1:59048219-59048238 None:intergenic 35.0%
TGATTGAGATCAAATCGGAT+GGG + chr1.1:59047436-59047455 None:intergenic 35.0%
TTTCAATTAGAGAAACGGAG+GGG - chr1.1:59047677-59047696 MS.gene74881:CDS 35.0%
! AATCCATCACTTCTCACTTT+TGG + chr1.1:59048160-59048179 None:intergenic 35.0%
! AGAAGAAAAAAGCACGATAG+AGG - chr1.1:59047283-59047302 MS.gene74881:CDS 35.0%
! CATTGTTGATTATGATGGGA+TGG + chr1.1:59047535-59047554 None:intergenic 35.0%
!! CTGATTGATTTTGGTAGGAT+TGG + chr1.1:59047842-59047861 None:intergenic 35.0%
!! GTCTGCTGGTTTGAAATTTA+TGG - chr1.1:59047923-59047942 MS.gene74881:intron 35.0%
!! TACTGCTGATTGATTTTGGT+AGG + chr1.1:59047847-59047866 None:intergenic 35.0%
AGAAGTTGCTAGACTTCGTA+CGG - chr1.1:59047901-59047920 MS.gene74881:CDS 40.0%
AGAGATCTCTCCATTACTTG+GGG - chr1.1:59047725-59047744 MS.gene74881:intron 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.1:59048193-59048212 MS.gene74881:CDS 40.0%
CCGCTGAATCAGATATTGTT+TGG - chr1.1:59047399-59047418 MS.gene74881:CDS 40.0%
CGTTCTCTATCATCATAGTC+TGG + chr1.1:59048109-59048128 None:intergenic 40.0%
CTAGAGATCTCTCCATTACT+TGG - chr1.1:59047723-59047742 MS.gene74881:intron 40.0%
GAGATATAGAGACTTCTTGG+AGG + chr1.1:59047501-59047520 None:intergenic 40.0%
GCTTTCAATTAGAGAAACGG+AGG - chr1.1:59047675-59047694 MS.gene74881:CDS 40.0%
GGTGTACTTGAAATAAAGGG+TGG - chr1.1:59048241-59048260 MS.gene74881:CDS 40.0%
GTTATCCAATCCCAATAGCA+AGG + chr1.1:59047758-59047777 None:intergenic 40.0%
TACGAAGTCTAGCAACTTCT+TGG + chr1.1:59047901-59047920 None:intergenic 40.0%
TCTTCCTACCAAGTTAACTG+TGG - chr1.1:59048033-59048052 MS.gene74881:intron 40.0%
! ACAACCACAGTTAACTTGGT+AGG + chr1.1:59048040-59048059 None:intergenic 40.0%
! GGATTTCTGGAGATTGAGAT+GGG - chr1.1:59048175-59048194 MS.gene74881:CDS 40.0%
! TGGATTTCTGGAGATTGAGA+TGG - chr1.1:59048174-59048193 MS.gene74881:CDS 40.0%
!! AGTGAGAAGTGATGGATTTC+TGG - chr1.1:59048162-59048181 MS.gene74881:CDS 40.0%
AAGGGTGGTCAAAACAAAGG+TGG - chr1.1:59048256-59048275 MS.gene74881:CDS 45.0%
AGAGAAACGGAGGGGTAAAA+AGG - chr1.1:59047685-59047704 MS.gene74881:intron 45.0%
ATAAGATCTGACCTGGACTC+TGG + chr1.1:59047785-59047804 None:intergenic 45.0%
CGTCCAAAAGTGAGAAGTGA+TGG - chr1.1:59048154-59048173 MS.gene74881:CDS 45.0%
GAACGAAATGACGAGTTCCA+AGG - chr1.1:59048124-59048143 MS.gene74881:CDS 45.0%
GACAACCTACATGAATCGAC+TGG + chr1.1:59047353-59047372 None:intergenic 45.0%
TCTTGGTAGATACACCAGCT+TGG + chr1.1:59048072-59048091 None:intergenic 45.0%
TGGGTCCAACCAAACATTCT+TGG + chr1.1:59048089-59048108 None:intergenic 45.0%
! CAACTCCAGTCGATTCATGT+AGG - chr1.1:59047345-59047364 MS.gene74881:CDS 45.0%
! CTTTTGGACGTTCTAGTCCT+TGG + chr1.1:59048144-59048163 None:intergenic 45.0%
!! ACACTCCTTGCTATTGGGAT+TGG - chr1.1:59047750-59047769 MS.gene74881:intron 45.0%
AAACAGTGAGGACGCAGACT+GGG + chr1.1:59047468-59047487 None:intergenic 50.0%
AAGCACGATAGAGGCTTTGC+CGG - chr1.1:59047292-59047311 MS.gene74881:CDS 50.0%
ATCTGACCTGGACTCTGGTA+GGG + chr1.1:59047780-59047799 None:intergenic 50.0%
ATCTTGGCAATGCATCCCTC+CGG + chr1.1:59047314-59047333 None:intergenic 50.0%
GTTGTACTTGGAGACCAAGC+TGG - chr1.1:59048055-59048074 MS.gene74881:CDS 50.0%
TAAACAGTGAGGACGCAGAC+TGG + chr1.1:59047469-59047488 None:intergenic 50.0%
TAGAGACTTCTTGGAGGGAG+AGG + chr1.1:59047495-59047514 None:intergenic 50.0%
!! AGCGGCAGAACGAAAGCATT+TGG + chr1.1:59047384-59047403 None:intergenic 50.0%
!! AGGAGTGTCACCCCAAGTAA+TGG + chr1.1:59047738-59047757 None:intergenic 50.0%
!! GGGTGACACTCCTTGCTATT+GGG - chr1.1:59047745-59047764 MS.gene74881:intron 50.0%
ACGATAGAGGCTTTGCCGGA+GGG - chr1.1:59047296-59047315 MS.gene74881:CDS 55.0%
AGACTTCTTGGAGGGAGAGG+TGG + chr1.1:59047492-59047511 None:intergenic 55.0%
CTAGACTTCGTACGGTCTGC+TGG - chr1.1:59047909-59047928 MS.gene74881:intron 55.0%
GATCTGACCTGGACTCTGGT+AGG + chr1.1:59047781-59047800 None:intergenic 55.0%
GGATAACCCTACCAGAGTCC+AGG - chr1.1:59047771-59047790 MS.gene74881:intron 55.0%
GGGAGAGGTGGTAAACAGTG+AGG + chr1.1:59047480-59047499 None:intergenic 55.0%
! GGGGTGACACTCCTTGCTAT+TGG - chr1.1:59047744-59047763 MS.gene74881:intron 55.0%
CACGATAGAGGCTTTGCCGG+AGG - chr1.1:59047295-59047314 MS.gene74881:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 59047278 59048318 59047278 ID=MS.gene74881
chr1.1 mRNA 59047278 59048318 59047278 ID=MS.gene74881.t1;Parent=MS.gene74881
chr1.1 exon 59048034 59048318 59048034 ID=MS.gene74881.t1.exon1;Parent=MS.gene74881.t1
chr1.1 CDS 59048034 59048318 59048034 ID=cds.MS.gene74881.t1;Parent=MS.gene74881.t1
chr1.1 exon 59047804 59047922 59047804 ID=MS.gene74881.t1.exon2;Parent=MS.gene74881.t1
chr1.1 CDS 59047804 59047922 59047804 ID=cds.MS.gene74881.t1;Parent=MS.gene74881.t1
chr1.1 exon 59047278 59047701 59047278 ID=MS.gene74881.t1.exon3;Parent=MS.gene74881.t1
chr1.1 CDS 59047278 59047701 59047278 ID=cds.MS.gene74881.t1;Parent=MS.gene74881.t1
Gene Sequence

>MS.gene74881

ATGGAAGAAGAAAAAAGCACGATAGAGGCTTTGCCGGAGGGATGCATTGCCAAGATATTGTCGCATACAACTCCAGTCGATTCATGTAGGTTGTCACTTGTTTCCAAATGCTTTCGTTCTGCCGCTGAATCAGATATTGTTTGGGATCGTTTTCTCCCATCCGATTTGATCTCAATCATTTCTGATTCCCAGTCTGCGTCCTCACTGTTTACCACCTCTCCCTCCAAGAAGTCTCTATATCTCACTCTCTCTGACCATCCCATCATAATCAACAATGGTAAAAAGGTATCATTCTCACAAACTACCAAATCAAGTTGTCGATTTTTGCTATAATAATTATTCATTATAGTTAGAATGTTAAACTTGACTCTTTATTATGGTGCCGCTAAATTTCAGAGCTTTCAATTAGAGAAACGGAGGGGTAAAAAGGTATACATGCTTAGTGCTAGAGATCTCTCCATTACTTGGGGTGACACTCCTTGCTATTGGGATTGGATAACCCTACCAGAGTCCAGGTCAGATCTTATTTAGATTTTCTTTACTAGTAGTAATTGATTTTCTCCAATCCTACCAAAATCAATCAGCAGTAAATGATTTTGTTCACAACTTTTGAACAGATTCCAAGAAGTTGCTAGACTTCGTACGGTCTGCTGGTTTGAAATTTATGGGCATATTAATAAACGTGTTTTATCCTCAAATACTCAATACGTAGCTTTTCTCGTGTTTAAGATGATCAATGCCTATCGTTTTGAAGATCTTCCTACCAAGTTAACTGTGGTTGTACTTGGAGACCAAGCTGGTGTATCTACCAAGAATGTTTGGTTGGACCCAGACTATGATGATAGAGAACGAAATGACGAGTTCCAAGGACTAGAACGTCCAAAAGTGAGAAGTGATGGATTTCTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTAGAAGATGAAGTTGTTGAGATGGGTGTACTTGAAATAAAGGGTGGTCAAAACAAAGGTGGTTTCATTCTTGAAGGAATAGAAATAAGACCTAAGAAGTGA
Protein sequence

>MS.gene74881.t1

MEEEKSTIEALPEGCIAKILSHTTPVDSCRLSLVSKCFRSAAESDIVWDRFLPSDLISIISDSQSASSLFTTSPSKKSLYLTLSDHPIIINNGKKSFQLEKRRGKKVYMLSARDLSITWGDTPCYWDWITLPESRFQEVARLRTVCWFEIYGHINKRVLSSNTQYVAFLVFKMINAYRFEDLPTKLTVVVLGDQAGVSTKNVWLDPDYDDRERNDEFQGLERPKVRSDGFLEIEMGEFFNSGLEDEVVEMGVLEIKGGQNKGGFILEGIEIRPKK