AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07581

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07581.t1 MTR_1g079380 94.757 267 14 0 1 267 1 267 4.38e-179 494
MS.gene07581.t1 MTR_1g079370 84.528 265 41 0 1 265 1 265 9.84e-169 467
MS.gene07581.t1 MTR_1g079180 75.000 268 61 3 1 265 1 265 3.60e-146 410
MS.gene07581.t1 MTR_1g079260 69.818 275 76 2 1 268 1 275 5.18e-140 395
MS.gene07581.t1 MTR_1g079460 71.956 271 71 2 1 268 1 269 6.89e-138 389
MS.gene07581.t1 MTR_1g100597 70.290 276 73 2 1 268 1 275 1.13e-137 389
MS.gene07581.t1 MTR_1g079200 71.481 270 66 4 1 265 1 264 9.27e-135 381
MS.gene07581.t1 MTR_1g079230 65.217 276 88 2 1 268 1 276 1.46e-125 358
MS.gene07581.t1 MTR_1g079850 63.028 284 89 3 1 268 1 284 4.30e-120 345
MS.gene07581.t1 MTR_1g100613 67.755 245 67 2 15 248 1 244 1.78e-115 332
MS.gene07581.t1 MTR_3g452600 63.910 266 90 4 4 268 10 270 6.66e-113 326
MS.gene07581.t1 MTR_1g079250 60.854 281 97 5 1 268 1 281 1.26e-108 316
MS.gene07581.t1 MTR_3g006850 56.863 306 87 5 4 268 17 318 1.14e-105 309
MS.gene07581.t1 MTR_1g026510 56.294 286 107 6 1 268 1 286 1.28e-105 308
MS.gene07581.t1 MTR_1g079410 57.037 270 108 4 2 265 6 273 3.19e-102 299
MS.gene07581.t1 MTR_3g450990 56.738 282 100 6 4 268 10 286 8.61e-99 291
MS.gene07581.t1 MTR_2g079100 59.770 261 95 2 4 262 9 261 2.81e-98 289
MS.gene07581.t1 MTR_1g079350 56.522 276 108 6 1 265 1 275 3.91e-95 281
MS.gene07581.t1 MTR_1g079140 49.662 296 115 5 3 265 12 306 1.22e-92 276
MS.gene07581.t1 MTR_1g078470 69.780 182 49 4 85 265 8 184 2.35e-83 248
MS.gene07581.t1 MTR_1g079340 52.595 289 110 8 1 265 40 325 2.68e-82 250
MS.gene07581.t1 MTR_1g079400 48.410 283 110 4 4 265 12 279 1.33e-81 247
MS.gene07581.t1 MTR_7g096300 56.126 253 92 6 1 245 1 242 3.19e-81 259
MS.gene07581.t1 MTR_7g112550 45.070 284 135 8 2 267 5 285 4.76e-68 212
MS.gene07581.t1 MTR_1g079240 60.773 181 60 4 85 265 10 179 1.57e-63 197
MS.gene07581.t1 MTR_1g083580 40.647 278 149 8 2 265 6 281 8.89e-62 196
MS.gene07581.t1 MTR_7g112560 38.491 265 146 6 7 265 4 257 1.70e-55 179
MS.gene07581.t1 MTR_1g076870 66.418 134 29 1 128 245 2 135 1.32e-54 173
MS.gene07581.t1 MTR_1g079130 47.090 189 76 4 101 265 1 189 3.88e-50 163
MS.gene07581.t1 MTR_4g023570 36.641 262 135 6 7 265 4 237 1.68e-48 161
MS.gene07581.t1 MTR_1g079350 50.898 167 71 4 1 159 1 164 6.69e-45 151
MS.gene07581.t1 MTR_1g079210 56.911 123 41 1 129 239 7 129 1.92e-39 134
MS.gene07581.t1 MTR_3g058640 59.804 102 39 1 128 229 7 106 1.85e-35 123
MS.gene07581.t1 MTR_7g096310 49.333 150 68 3 38 185 19 162 9.30e-34 120
MS.gene07581.t1 MTR_2g042540 60.000 105 40 2 1 103 1 105 2.45e-33 118
MS.gene07581.t1 MTR_1g078460 67.816 87 28 0 1 87 64 150 8.82e-33 117
MS.gene07581.t1 MTR_4g083970 30.288 208 121 3 63 265 102 290 6.87e-29 111
MS.gene07581.t1 MTR_7g103380 25.362 276 180 7 4 264 19 283 5.98e-26 103
MS.gene07581.t1 MTR_1g079220 70.588 68 18 1 165 232 1 66 5.60e-24 92.4
MS.gene07581.t1 MTR_0113s0040 32.768 177 110 4 2 174 20 191 2.13e-22 94.0
MS.gene07581.t1 MTR_0002s0020 29.767 215 123 5 4 195 22 231 3.13e-20 88.2
MS.gene07581.t1 MTR_1g101390 33.143 175 112 3 2 174 26 197 2.36e-19 85.9
MS.gene07581.t1 MTR_1g079390 76.000 50 10 2 211 260 8 55 4.79e-19 79.0
MS.gene07581.t1 MTR_5g010800 32.450 151 93 4 2 147 15 161 9.85e-19 84.0
MS.gene07581.t1 MTR_4g102770 32.877 146 94 2 4 146 19 163 4.10e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07581.t1 AT2G02360 47.328 262 124 5 7 264 17 268 1.93e-80 243
MS.gene07581.t1 AT1G80110 45.594 261 136 3 4 264 1 255 1.02e-73 226
MS.gene07581.t1 AT2G02340 44.444 270 143 4 1 264 33 301 2.14e-73 227
MS.gene07581.t1 AT2G02240 45.385 260 133 5 7 264 64 316 2.56e-72 224
MS.gene07581.t1 AT2G02250 44.151 265 136 7 4 264 47 303 2.49e-70 219
MS.gene07581.t1 AT2G02230 38.689 305 141 7 7 268 35 336 5.18e-68 214
MS.gene07581.t1 AT1G09155 41.577 279 142 7 7 265 3 280 2.11e-60 193
MS.gene07581.t1 AT2G02350 39.623 265 150 6 4 264 24 282 2.45e-58 188
MS.gene07581.t1 AT1G56240 41.367 278 142 6 7 264 4 280 1.38e-56 183
MS.gene07581.t1 AT1G56250 41.577 279 142 6 7 265 4 281 2.31e-56 182
MS.gene07581.t1 AT2G02320 40.602 266 142 7 6 264 42 298 4.10e-55 180
MS.gene07581.t1 AT2G02310 35.985 264 159 5 6 265 47 304 4.12e-52 172
MS.gene07581.t1 AT2G02300 38.519 270 136 8 4 265 34 281 1.19e-48 162
MS.gene07581.t1 AT5G24560 51.429 140 65 1 6 145 5 141 5.11e-44 148
MS.gene07581.t1 AT5G24560 57.143 49 20 1 217 265 145 192 2.69e-13 67.4
MS.gene07581.t1 AT3G53000 28.727 275 171 7 4 264 21 284 2.44e-29 112
MS.gene07581.t1 AT2G02350 36.310 168 100 5 101 264 1 165 1.94e-28 107
MS.gene07581.t1 AT3G61060 25.271 277 167 7 6 265 27 280 2.82e-22 93.6
MS.gene07581.t1 AT3G61060 24.910 277 169 6 6 265 27 281 3.59e-22 93.6
MS.gene07581.t1 AT1G33920 28.235 170 101 3 100 265 12 164 1.72e-20 85.9
MS.gene07581.t1 AT4G19840 31.953 169 96 6 99 265 94 245 4.62e-19 84.3
MS.gene07581.t1 AT4G19850 29.282 181 102 5 92 265 15 176 6.23e-19 82.4
MS.gene07581.t1 AT4G19850 29.282 181 102 5 92 265 57 218 6.89e-19 83.2
MS.gene07581.t1 AT1G12710 26.692 266 178 7 4 264 28 281 2.23e-18 83.2
MS.gene07581.t1 AT1G63090 32.121 165 104 4 4 165 26 185 5.56e-18 82.0
MS.gene07581.t1 AT5G52120 26.370 292 169 8 1 267 18 288 1.26e-16 78.2
MS.gene07581.t1 AT1G65390 28.070 171 101 3 100 266 259 411 6.82e-16 77.0
MS.gene07581.t1 AT1G12710 33.582 134 83 3 4 134 28 158 1.69e-13 69.7
MS.gene07581.t1 AT4G19850 29.655 145 77 4 92 230 57 182 5.15e-12 64.3

Find 71 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCCGCATATTGAGTATT+TGG 0.191589 1.2:-62030889 None:intergenic
CTAGATCTCTTGCCATTGTT+TGG 0.245415 1.2:+62028670 MS.gene07581:CDS
TAGATCTCTTGCCATTGTTT+GGG 0.268063 1.2:+62028671 MS.gene07581:CDS
CATCATCGATCATGATAAAA+AGG 0.292355 1.2:+62028522 MS.gene07581:CDS
TTCAAAATGATTAATGCTTC+GGG 0.296562 1.2:+62030919 MS.gene07581:CDS
AAGCCGCATATTGAGTATTT+GGG 0.318920 1.2:-62030888 None:intergenic
GTTCAAAATGATTAATGCTT+CGG 0.326412 1.2:+62030918 MS.gene07581:CDS
TCAACAAGCTTAGCGACTTC+AGG 0.333696 1.2:-62030817 None:intergenic
TACAGACAAGGGGTGGTAAT+TGG 0.334982 1.2:+62031163 MS.gene07581:CDS
TGCGGCCTACCTTCCACATT+TGG 0.361432 1.2:-62031018 None:intergenic
GGATTTCTATGCCTGATTCC+AGG 0.379925 1.2:+62028718 MS.gene07581:CDS
TTGTCTGTATCACATTCATC+TGG 0.386190 1.2:-62031149 None:intergenic
TCAAGAGCTAACCTGGAATC+AGG 0.413242 1.2:-62028729 None:intergenic
CCTCCGATTCTGACGCTGTA+TGG 0.419563 1.2:+62028392 MS.gene07581:CDS
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1.2:+62030993 MS.gene07581:CDS
GACAGAGATTCAGGATTTGC+CGG 0.423087 1.2:+62028285 MS.gene07581:CDS
CTAAGCTTGTTGATGTGTGT+TGG 0.438622 1.2:+62030827 MS.gene07581:CDS
TAGAGTTGTACGAGAGACTA+TGG 0.443018 1.2:-62028323 None:intergenic
GTGTGTTGGCTTGAAATTCA+TGG 0.446205 1.2:+62030841 MS.gene07581:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.449929 1.2:+62031199 MS.gene07581:CDS
ATGGCGGCGATGCATCCTTC+CGG 0.452357 1.2:-62028304 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.458032 1.2:+62031090 MS.gene07581:CDS
GGGGTGATGATGAGCGCTAT+TGG 0.463196 1.2:+62028691 MS.gene07581:CDS
ATTCCATACAGCGTCAGAAT+CGG 0.465501 1.2:-62028395 None:intergenic
AAGAGAGGTCTCGTTCTTGA+AGG 0.466484 1.2:+62031186 MS.gene07581:CDS
GTTGGTTAATTGTTATACTT+AGG 0.467370 1.2:-62031222 None:intergenic
TTATCATGATCGATGATGAC+AGG 0.470528 1.2:-62028517 None:intergenic
ATGATGAGCGCTATTGGAAC+TGG 0.473714 1.2:+62028697 MS.gene07581:CDS
CAACAAGCTTAGCGACTTCA+GGG 0.483357 1.2:-62030816 None:intergenic
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1.2:+62031069 MS.gene07581:CDS
CATATTGAGTATTTGGGGAC+AGG 0.497456 1.2:-62030882 None:intergenic
CGTCCTGCGGATTTATCAGT+TGG 0.505742 1.2:+62030952 MS.gene07581:CDS
GTAGGAGCGTTGGCGAGTAA+AGG 0.512124 1.2:-62028460 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.517146 1.2:+62031089 MS.gene07581:CDS
GGAGGCAGATCGGAAAGTCT+TGG 0.523752 1.2:-62028374 None:intergenic
CACCCATCGCTTCTCACACT+AGG 0.543006 1.2:-62031072 None:intergenic
CAGCCGCATGACAGAGTACT+CGG 0.550737 1.2:+62031039 MS.gene07581:CDS
GGGATTTCTGAACCGTCCTG+CGG 0.552108 1.2:+62030939 MS.gene07581:CDS
AGTACTCTGTCATGCGGCTG+CGG 0.560272 1.2:-62031036 None:intergenic
GAGATTCAGGATTTGCCGGA+AGG 0.560627 1.2:+62028289 MS.gene07581:CDS
AGATCTCTTGCCATTGTTTG+GGG 0.561132 1.2:+62028672 MS.gene07581:CDS
GATTTATCAGTTGGTGTCGA+AGG 0.564414 1.2:+62030961 MS.gene07581:CDS
CGTCAGAATCGGAGGCAGAT+CGG 0.566379 1.2:-62028384 None:intergenic
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.2:-62028353 None:intergenic
ATGATAGATGAAATATCAGA+AGG 0.573253 1.2:-62028427 None:intergenic
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.2:+62031077 MS.gene07581:CDS
CTCATCATCACCCCAAACAA+TGG 0.580299 1.2:-62028682 None:intergenic
TGGATCCAAATGTGGAAGGT+AGG 0.591841 1.2:+62031013 MS.gene07581:CDS
GTGGTTGGAGATTGAGATGG+GGG 0.596500 1.2:+62031092 MS.gene07581:CDS
TTATCAGTTGGTGTCGAAGG+TGG 0.596520 1.2:+62030964 MS.gene07581:CDS
AGCCGCATATTGAGTATTTG+GGG 0.603362 1.2:-62030887 None:intergenic
AGGGGTGGTAATTGGAAGAG+AGG 0.612751 1.2:+62031171 MS.gene07581:CDS
CCATACAGCGTCAGAATCGG+AGG 0.612806 1.2:-62028392 None:intergenic
GGTGGTTGGAGATTGAGATG+GGG 0.619250 1.2:+62031091 MS.gene07581:CDS
ACACCAACTGATAAATCCGC+AGG 0.623886 1.2:-62030955 None:intergenic
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.2:+62031005 MS.gene07581:CDS
TATCATGATCGATGATGACA+GGG 0.627429 1.2:-62028516 None:intergenic
GTCCCCAAATACTCAATATG+CGG 0.633956 1.2:+62030885 MS.gene07581:CDS
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.2:+62031070 MS.gene07581:CDS
AGTATTTGGGGACAGGACGA+TGG 0.644084 1.2:-62030875 None:intergenic
AGATGAATGTGATACAGACA+AGG 0.660761 1.2:+62031151 MS.gene07581:CDS
AATGTGATACAGACAAGGGG+TGG 0.670541 1.2:+62031156 MS.gene07581:CDS
TCGGAAAGTCTTGGAAACGA+CGG 0.681316 1.2:-62028365 None:intergenic
AATCCGAGTACTCTGTCATG+CGG 0.684286 1.2:-62031042 None:intergenic
GATGAATGTGATACAGACAA+GGG 0.695518 1.2:+62031152 MS.gene07581:CDS
TGTTTGGATCCAAATGTGGA+AGG 0.703248 1.2:+62031009 MS.gene07581:CDS
ATGAATGTGATACAGACAAG+GGG 0.709532 1.2:+62031153 MS.gene07581:CDS
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.2:+62031073 MS.gene07581:CDS
CAACTGATAAATCCGCAGGA+CGG 0.713336 1.2:-62030951 None:intergenic
CGTACAACTCTACTCGACGC+CGG 0.770956 1.2:+62028334 MS.gene07581:CDS
AGTTGTACGAGAGACTATGG+CGG 0.822452 1.2:-62028320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+CGG - chr1.2:62030689-62030670 None:intergenic 0.0%
!! AGTTTCTTAAAAAATATGAA+AGG - chr1.2:62029058-62029077 None:intergenic 15.0%
!! CATTAAAAAATAAATAGGTT+CGG - chr1.2:62029640-62029659 None:intergenic 15.0%
!! TGATGCATTAAAAAATAAAT+AGG - chr1.2:62029645-62029664 None:intergenic 15.0%
!! AATATGAAAGGACAAAATAA+AGG - chr1.2:62029046-62029065 None:intergenic 20.0%
!! ATAGTGTTTAGTAAAATTAG+CGG - chr1.2:62029085-62029104 None:intergenic 20.0%
!! TTGATTAACTCCTAATTAAT+AGG + chr1.2:62028748-62028767 MS.gene07581:intron 20.0%
!!! AGTCATATCCTTTTTTTTAT+AGG + chr1.2:62029188-62029207 MS.gene07581:intron 20.0%
!!! ATCAATTTTAACTTGAACAA+AGG - chr1.2:62029799-62029818 None:intergenic 20.0%
!!! CACTAAAAGTAAAAACATTT+TGG - chr1.2:62030058-62030077 None:intergenic 20.0%
!!! CTTTTTGAAACTATATTATG+TGG - chr1.2:62029994-62030013 None:intergenic 20.0%
!!! GATTTTTTAAGATGTTTAGT+TGG + chr1.2:62028582-62028601 MS.gene07581:intron 20.0%
!!! GGTCTGATTTTTATAATTTT+TGG - chr1.2:62029673-62029692 None:intergenic 20.0%
!!! TTTTTCAATTAAGATTGCAT+GGG - chr1.2:62029003-62029022 None:intergenic 20.0%
!!! TTTTTTCAATTAAGATTGCA+TGG - chr1.2:62029004-62029023 None:intergenic 20.0%
! ACTGAACGTTCTTTAAATTT+GGG - chr1.2:62029409-62029428 None:intergenic 25.0%
! ATGATAGATGAAATATCAGA+AGG - chr1.2:62028430-62028449 None:intergenic 25.0%
! CATTCAAGCCTATAAAAAAA+AGG - chr1.2:62029199-62029218 None:intergenic 25.0%
! GTACTATGTTCCTATTAATT+AGG - chr1.2:62028761-62028780 None:intergenic 25.0%
! GTACTCGACAAATAAAATAA+TGG - chr1.2:62029853-62029872 None:intergenic 25.0%
! GTTCAAAATGATTAATGCTT+CGG + chr1.2:62030918-62030937 MS.gene07581:CDS 25.0%
! TAATCAATAATGGCTTGATT+CGG - chr1.2:62028797-62028816 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG + chr1.2:62030993-62031012 MS.gene07581:CDS 25.0%
! TCTGTTTGGTAAAAAAATTG+CGG - chr1.2:62029169-62029188 None:intergenic 25.0%
! TTAAGTCTCAAAGAAAACAT+GGG - chr1.2:62030318-62030337 None:intergenic 25.0%
! TTCAAAATGATTAATGCTTC+GGG + chr1.2:62030919-62030938 MS.gene07581:CDS 25.0%
! TTGTAATGCAACAAACAAAT+TGG - chr1.2:62029694-62029713 None:intergenic 25.0%
!! AATCAAGCCATTATTGATTA+GGG + chr1.2:62028797-62028816 MS.gene07581:intron 25.0%
!! AGATATTTGAAATGAACAGT+TGG + chr1.2:62030196-62030215 MS.gene07581:intron 25.0%
!! TTTTAGTCATACAAACTTAC+AGG - chr1.2:62028856-62028875 None:intergenic 25.0%
!!! TAAGTAATATATGCTGTTTC+AGG - chr1.2:62030542-62030561 None:intergenic 25.0%
!!! TTTTAACTTGAACAAAGGAA+TGG - chr1.2:62029794-62029813 None:intergenic 25.0%
AAAAAGGATATGACTCTGTT+TGG - chr1.2:62029183-62029202 None:intergenic 30.0%
AACATAGTACTTGTTCTTGT+TGG + chr1.2:62028771-62028790 MS.gene07581:intron 30.0%
AATAGCCATGGTAATTCAAT+GGG - chr1.2:62030357-62030376 None:intergenic 30.0%
ACAGTAATTGATCACTAACA+TGG - chr1.2:62029232-62029251 None:intergenic 30.0%
AGCAATTAGGAACACAAAAA+AGG - chr1.2:62029610-62029629 None:intergenic 30.0%
AGTGATCAATTACTGTTGAT+GGG + chr1.2:62029236-62029255 MS.gene07581:intron 30.0%
ATATATAAGCCATAAGCTAC+TGG - chr1.2:62028961-62028980 None:intergenic 30.0%
ATGACTAAAAAAGATCCGTT+TGG + chr1.2:62028866-62028885 MS.gene07581:intron 30.0%
ATTCAAAAGGAGTAACAAAG+AGG + chr1.2:62029268-62029287 MS.gene07581:intron 30.0%
ATTCCAAATTCTAAGTCACA+GGG - chr1.2:62029462-62029481 None:intergenic 30.0%
CAGTAATTGATCACTAACAT+GGG - chr1.2:62029231-62029250 None:intergenic 30.0%
CATCATCGATCATGATAAAA+AGG + chr1.2:62028522-62028541 MS.gene07581:CDS 30.0%
CTGAACGTTCTTTAAATTTG+GGG - chr1.2:62029408-62029427 None:intergenic 30.0%
GACTGAACGTTCTTTAAATT+TGG - chr1.2:62029410-62029429 None:intergenic 30.0%
GTTAAGTCTCAAAGAAAACA+TGG - chr1.2:62030319-62030338 None:intergenic 30.0%
GTTATATCTACACATGTTCA+TGG + chr1.2:62029742-62029761 MS.gene07581:intron 30.0%
TAATAGCCATGGTAATTCAA+TGG - chr1.2:62030358-62030377 None:intergenic 30.0%
TAGTGATCAATTACTGTTGA+TGG + chr1.2:62029235-62029254 MS.gene07581:intron 30.0%
TGAACGTTCTTTAAATTTGG+GGG - chr1.2:62029407-62029426 None:intergenic 30.0%
TGAGACTTAACGTATTGTTA+TGG + chr1.2:62030328-62030347 MS.gene07581:intron 30.0%
TGATACTTAGTTGAAGTGTA+TGG - chr1.2:62029493-62029512 None:intergenic 30.0%
TGATGTCAACTAAATGAGTA+AGG + chr1.2:62030120-62030139 MS.gene07581:intron 30.0%
TGCAAAAGATATAATAGCCA+TGG - chr1.2:62030369-62030388 None:intergenic 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr1.2:62031199-62031218 MS.gene07581:CDS 30.0%
TTTCAACAATAATAAGCCTC+AGG - chr1.2:62028561-62028580 None:intergenic 30.0%
TTTCAATTGGAGAAAAAGAG+TGG + chr1.2:62028624-62028643 MS.gene07581:CDS 30.0%
! AGCTAGCTTATAGCTAATAA+AGG - chr1.2:62029129-62029148 None:intergenic 30.0%
! CAGGATCGTTAACTAAATTT+TGG - chr1.2:62030629-62030648 None:intergenic 30.0%
! GAATCAAGCCATTATTGATT+AGG + chr1.2:62028796-62028815 MS.gene07581:intron 30.0%
! GATCGTTAACTAAATTTTGG+AGG - chr1.2:62030626-62030645 None:intergenic 30.0%
! TCATTTTCTCCCATACTTAA+AGG - chr1.2:62030508-62030527 None:intergenic 30.0%
! TGAAATGCAGAGTTTTCAAT+TGG + chr1.2:62028611-62028630 MS.gene07581:intron 30.0%
!! AGACAATTTTAGTACTACTC+TGG - chr1.2:62030990-62031009 None:intergenic 30.0%
!! GTTTTTACTTTTAGTGTGAC+TGG + chr1.2:62030062-62030081 MS.gene07581:intron 30.0%
!!! AGATAGAGATCTTTTTTGGT+AGG - chr1.2:62028481-62028500 None:intergenic 30.0%
!!! AGCAAGATAGAGATCTTTTT+TGG - chr1.2:62028485-62028504 None:intergenic 30.0%
AAAATTCATAGCTACCACCT+CGG + chr1.2:62029374-62029393 MS.gene07581:intron 35.0%
AAACGGACCCTAATCAATAA+TGG - chr1.2:62028807-62028826 None:intergenic 35.0%
AACTTCATCCTTACACTATC+AGG + chr1.2:62030225-62030244 MS.gene07581:intron 35.0%
AAGCCGCATATTGAGTATTT+GGG - chr1.2:62030891-62030910 None:intergenic 35.0%
AAGCTAATTCCAGTAGCTTA+TGG + chr1.2:62028949-62028968 MS.gene07581:intron 35.0%
AAGTCGATGTCCTTTAAGTA+TGG + chr1.2:62030495-62030514 MS.gene07581:intron 35.0%
ACACTTATCATGAGAAAGTG+AGG + chr1.2:62030463-62030482 MS.gene07581:intron 35.0%
AGAAAACGACAGTTACCAAA+CGG - chr1.2:62028884-62028903 None:intergenic 35.0%
AGATGAATGTGATACAGACA+AGG + chr1.2:62031151-62031170 MS.gene07581:CDS 35.0%
AGTCGATGTCCTTTAAGTAT+GGG + chr1.2:62030496-62030515 MS.gene07581:intron 35.0%
ATGAATGTGATACAGACAAG+GGG + chr1.2:62031153-62031172 MS.gene07581:CDS 35.0%
CAAATGTGTGTCTTACCAAA+CGG - chr1.2:62028824-62028843 None:intergenic 35.0%
CAGTTAATTCTTATCAGACG+AGG - chr1.2:62029309-62029328 None:intergenic 35.0%
CATCGATCATGATAAAAAGG+TGG + chr1.2:62028525-62028544 MS.gene07581:intron 35.0%
GATGAATGTGATACAGACAA+GGG + chr1.2:62031152-62031171 MS.gene07581:CDS 35.0%
GATTCCAAATTCTAAGTCAC+AGG - chr1.2:62029463-62029482 None:intergenic 35.0%
GATTGTCACAACATAAGAGT+TGG - chr1.2:62030414-62030433 None:intergenic 35.0%
GTATGGGAGAAAATGAATGT+TGG + chr1.2:62030512-62030531 MS.gene07581:intron 35.0%
TAAGCCGCATATTGAGTATT+TGG - chr1.2:62030892-62030911 None:intergenic 35.0%
TACTTAGTTGAAGTGTATGG+AGG - chr1.2:62029490-62029509 None:intergenic 35.0%
TAGATCTCTTGCCATTGTTT+GGG + chr1.2:62028671-62028690 MS.gene07581:CDS 35.0%
TATCATGATCGATGATGACA+GGG - chr1.2:62028519-62028538 None:intergenic 35.0%
TGGAGCAAATGTCAGAAAAT+GGG - chr1.2:62029974-62029993 None:intergenic 35.0%
TGTCAACTAAATGAGTAAGG+AGG + chr1.2:62030123-62030142 MS.gene07581:intron 35.0%
TTATCATGATCGATGATGAC+AGG - chr1.2:62028520-62028539 None:intergenic 35.0%
TTGTCTGTATCACATTCATC+TGG - chr1.2:62031152-62031171 None:intergenic 35.0%
! AGGAAAACTGATGATGTTCA+TGG + chr1.2:62029903-62029922 MS.gene07581:intron 35.0%
! ATTATTGATTAGGGTCCGTT+TGG + chr1.2:62028806-62028825 MS.gene07581:intron 35.0%
! CATCTTCTGTGTACTACTTT+TGG + chr1.2:62030786-62030805 MS.gene07581:intron 35.0%
! TTTGAAATGAACAGTTGGCT+AGG + chr1.2:62030201-62030220 MS.gene07581:intron 35.0%
! TTTTGTGTTCCTAATTGCTG+CGG + chr1.2:62029611-62029630 MS.gene07581:intron 35.0%
!! AATTACTGTTGATGGGTTCT+AGG + chr1.2:62029243-62029262 MS.gene07581:intron 35.0%
!! ATTACTGTTGATGGGTTCTA+GGG + chr1.2:62029244-62029263 MS.gene07581:intron 35.0%
!! GGTTGATAAATTAACAGTGC+AGG - chr1.2:62030648-62030667 None:intergenic 35.0%
AAATTCATAGCTACCACCTC+GGG + chr1.2:62029375-62029394 MS.gene07581:intron 40.0%
ACTTCATCATTCAGGATAGC+AGG + chr1.2:62029871-62029890 MS.gene07581:intron 40.0%
AGATCTCTTGCCATTGTTTG+GGG + chr1.2:62028672-62028691 MS.gene07581:CDS 40.0%
AGCCGCATATTGAGTATTTG+GGG - chr1.2:62030890-62030909 None:intergenic 40.0%
AGCTACAGAAGAAGGATCTT+GGG - chr1.2:62029558-62029577 None:intergenic 40.0%
AGTTTACTAGGCCACATGTA+TGG + chr1.2:62030258-62030277 MS.gene07581:intron 40.0%
ATTCCATACAGCGTCAGAAT+CGG - chr1.2:62028398-62028417 None:intergenic 40.0%
CACAACATAAGAGTTGGAGT+TGG - chr1.2:62030408-62030427 None:intergenic 40.0%
CATATTGAGTATTTGGGGAC+AGG - chr1.2:62030885-62030904 None:intergenic 40.0%
CTAGATCTCTTGCCATTGTT+TGG + chr1.2:62028670-62028689 MS.gene07581:CDS 40.0%
GAGTTAATCAAGAGCTAACC+TGG - chr1.2:62028739-62028758 None:intergenic 40.0%
GGAATCCCATTGAATTACCA+TGG + chr1.2:62030349-62030368 MS.gene07581:intron 40.0%
GGAGCAAATGTCAGAAAATG+GGG - chr1.2:62029973-62029992 None:intergenic 40.0%
GGCCTAGTAAACTTCTACAT+AGG - chr1.2:62030251-62030270 None:intergenic 40.0%
GGCCTATGTAGAAGTTTACT+AGG + chr1.2:62030246-62030265 MS.gene07581:intron 40.0%
GTCCCCAAATACTCAATATG+CGG + chr1.2:62030885-62030904 MS.gene07581:CDS 40.0%
GTGGAGCAAATGTCAGAAAA+TGG - chr1.2:62029975-62029994 None:intergenic 40.0%
GTTGACATCATAACTGATGC+AGG - chr1.2:62030110-62030129 None:intergenic 40.0%
TAGAGTTGTACGAGAGACTA+TGG - chr1.2:62028326-62028345 None:intergenic 40.0%
TGACCCTGTGACTTAGAATT+TGG + chr1.2:62029456-62029475 MS.gene07581:intron 40.0%
TGTCGAGTACTTCATCATTC+AGG + chr1.2:62029863-62029882 MS.gene07581:intron 40.0%
TGTCTGTTTGGATCCAAATG+TGG + chr1.2:62031005-62031024 MS.gene07581:CDS 40.0%
TGTTTGGATCCAAATGTGGA+AGG + chr1.2:62031009-62031028 MS.gene07581:CDS 40.0%
! AGGTGGTATTCTTTTTCCTG+AGG + chr1.2:62028542-62028561 MS.gene07581:intron 40.0%
! TACATAGGCCTGATAGTGTA+AGG - chr1.2:62030236-62030255 None:intergenic 40.0%
!! CATGGTCATCATTTTTGTCG+TGG + chr1.2:62029921-62029940 MS.gene07581:intron 40.0%
!! CTAAGCTTGTTGATGTGTGT+TGG + chr1.2:62030827-62030846 MS.gene07581:CDS 40.0%
!! GAGTAAGGAGGTTTTAGTCT+TGG + chr1.2:62030135-62030154 MS.gene07581:intron 40.0%
!! GATTTATCAGTTGGTGTCGA+AGG + chr1.2:62030961-62030980 MS.gene07581:CDS 40.0%
!! GTGTGTTGGCTTGAAATTCA+TGG + chr1.2:62030841-62030860 MS.gene07581:CDS 40.0%
!! TCTGTGTACTACTTTTGGAC+AGG + chr1.2:62030791-62030810 MS.gene07581:intron 40.0%
!!! ATCTTTTTTGGTAGGAGCGT+TGG - chr1.2:62028473-62028492 None:intergenic 40.0%
!!! TAAGGAGGTTTTAGTCTTGG+CGG + chr1.2:62030138-62030157 MS.gene07581:intron 40.0%
AAGAGAGGTCTCGTTCTTGA+AGG + chr1.2:62031186-62031205 MS.gene07581:CDS 45.0%
AATCCGAGTACTCTGTCATG+CGG - chr1.2:62031045-62031064 None:intergenic 45.0%
AATGTGATACAGACAAGGGG+TGG + chr1.2:62031156-62031175 MS.gene07581:CDS 45.0%
ACACCAACTGATAAATCCGC+AGG - chr1.2:62030958-62030977 None:intergenic 45.0%
AGTTGTACGAGAGACTATGG+CGG - chr1.2:62028323-62028342 None:intergenic 45.0%
ATGATGAGCGCTATTGGAAC+TGG + chr1.2:62028697-62028716 MS.gene07581:CDS 45.0%
ATGGGGGAGTTCTTCAATTC+GGG + chr1.2:62031108-62031127 MS.gene07581:CDS 45.0%
ATGTCCAGTGTCCATACATG+TGG - chr1.2:62030272-62030291 None:intergenic 45.0%
CAACAAGCTTAGCGACTTCA+GGG - chr1.2:62030819-62030838 None:intergenic 45.0%
CAACTGATAAATCCGCAGGA+CGG - chr1.2:62030954-62030973 None:intergenic 45.0%
CTCATCATCACCCCAAACAA+TGG - chr1.2:62028685-62028704 None:intergenic 45.0%
GACAGAGATTCAGGATTTGC+CGG + chr1.2:62028285-62028304 MS.gene07581:CDS 45.0%
GAGCTACAGAAGAAGGATCT+TGG - chr1.2:62029559-62029578 None:intergenic 45.0%
GATGGGGGAGTTCTTCAATT+CGG + chr1.2:62031107-62031126 MS.gene07581:CDS 45.0%
GCTACAGAAGAAGGATCTTG+GGG - chr1.2:62029557-62029576 None:intergenic 45.0%
GGATTTCTATGCCTGATTCC+AGG + chr1.2:62028718-62028737 MS.gene07581:CDS 45.0%
TACAGACAAGGGGTGGTAAT+TGG + chr1.2:62031163-62031182 MS.gene07581:CDS 45.0%
TCAACAAGCTTAGCGACTTC+AGG - chr1.2:62030820-62030839 None:intergenic 45.0%
TCAAGAGCTAACCTGGAATC+AGG - chr1.2:62028732-62028751 None:intergenic 45.0%
TCATCATTCAGGATAGCAGG+TGG + chr1.2:62029874-62029893 MS.gene07581:intron 45.0%
TCGGAAAGTCTTGGAAACGA+CGG - chr1.2:62028368-62028387 None:intergenic 45.0%
TGGATCCAAATGTGGAAGGT+AGG + chr1.2:62031013-62031032 MS.gene07581:CDS 45.0%
! ATCCTTCTTCTGTAGCTCTG+CGG + chr1.2:62029561-62029580 MS.gene07581:intron 45.0%
!! TGGGTTCTAGGGCATTCAAA+AGG + chr1.2:62029255-62029274 MS.gene07581:intron 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG + chr1.2:62030964-62030983 MS.gene07581:CDS 45.0%
!! ATATATATATATATATATAC+GGG - chr1.2:62030732-62030713 None:intergenic 5.0%
AACCGCAGAGCTACAGAAGA+AGG - chr1.2:62029566-62029585 None:intergenic 50.0%
AATTTGGGGGTTTGAACCCG+AGG - chr1.2:62029394-62029413 None:intergenic 50.0%
AGGATAGCAGGTGGTCTTTG+AGG + chr1.2:62029883-62029902 MS.gene07581:intron 50.0%
AGGGGTGGTAATTGGAAGAG+AGG + chr1.2:62031171-62031190 MS.gene07581:CDS 50.0%
AGTATTTGGGGACAGGACGA+TGG - chr1.2:62030878-62030897 None:intergenic 50.0%
CGGAAGTTGGATGAAGAGCA+TGG - chr1.2:62029527-62029546 None:intergenic 50.0%
CGTCCTGCGGATTTATCAGT+TGG + chr1.2:62030952-62030971 MS.gene07581:CDS 50.0%
CTCTTCATCCAACTTCCGCT+TGG + chr1.2:62029529-62029548 MS.gene07581:intron 50.0%
GAGATTCAGGATTTGCCGGA+AGG + chr1.2:62028289-62028308 MS.gene07581:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr1.2:62031090-62031109 MS.gene07581:CDS 50.0%
GGTGGTTGGAGATTGAGATG+GGG + chr1.2:62031091-62031110 MS.gene07581:CDS 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG + chr1.2:62031070-62031089 MS.gene07581:CDS 50.0%
GTGGTTGGAGATTGAGATGG+GGG + chr1.2:62031092-62031111 MS.gene07581:CDS 50.0%
TAGGCCACATGTATGGACAC+TGG + chr1.2:62030265-62030284 MS.gene07581:intron 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr1.2:62031089-62031108 MS.gene07581:CDS 50.0%
AAGGATCTTGGGGCTCCAAG+CGG - chr1.2:62029547-62029566 None:intergenic 55.0%
AGTACTCTGTCATGCGGCTG+CGG - chr1.2:62031039-62031058 None:intergenic 55.0%
CACCCATCGCTTCTCACACT+AGG - chr1.2:62031075-62031094 None:intergenic 55.0%
CCATACAGCGTCAGAATCGG+AGG - chr1.2:62028395-62028414 None:intergenic 55.0%
CCTCCGATTCTGACGCTGTA+TGG + chr1.2:62028392-62028411 MS.gene07581:CDS 55.0%
CGTACAACTCTACTCGACGC+CGG + chr1.2:62028334-62028353 MS.gene07581:CDS 55.0%
CGTCAGAATCGGAGGCAGAT+CGG - chr1.2:62028387-62028406 None:intergenic 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG + chr1.2:62031069-62031088 MS.gene07581:CDS 55.0%
CTAGTGTGAGAAGCGATGGG+TGG + chr1.2:62031073-62031092 MS.gene07581:CDS 55.0%
GGAGGCAGATCGGAAAGTCT+TGG - chr1.2:62028377-62028396 None:intergenic 55.0%
GGGATTTCTGAACCGTCCTG+CGG + chr1.2:62030939-62030958 MS.gene07581:CDS 55.0%
GTTCGGTTGCCGCAGCAATT+AGG - chr1.2:62029623-62029642 None:intergenic 55.0%
TGCGGCCTACCTTCCACATT+TGG - chr1.2:62031021-62031040 None:intergenic 55.0%
TGTGAGAAGCGATGGGTGGT+TGG + chr1.2:62031077-62031096 MS.gene07581:CDS 55.0%
! CAGCCGCATGACAGAGTACT+CGG + chr1.2:62031039-62031058 MS.gene07581:CDS 55.0%
! GGGGTGATGATGAGCGCTAT+TGG + chr1.2:62028691-62028710 MS.gene07581:CDS 55.0%
!! GTAGGAGCGTTGGCGAGTAA+AGG - chr1.2:62028463-62028482 None:intergenic 55.0%
ATGGCGGCGATGCATCCTTC+CGG - chr1.2:62028307-62028326 None:intergenic 60.0%
GGAAACGACGGAGAGTCTGC+CGG - chr1.2:62028356-62028375 None:intergenic 60.0%
TTGGGGCTCCAAGCGGAAGT+TGG - chr1.2:62029540-62029559 None:intergenic 60.0%
TTGGGGGTTTGAACCCGAGG+TGG - chr1.2:62029391-62029410 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62028283 62031239 62028283 ID=MS.gene07581
chr1.2 mRNA 62028283 62031239 62028283 ID=MS.gene07581.t1;Parent=MS.gene07581
chr1.2 exon 62028283 62028543 62028283 ID=MS.gene07581.t1.exon1;Parent=MS.gene07581.t1
chr1.2 CDS 62028283 62028543 62028283 ID=cds.MS.gene07581.t1;Parent=MS.gene07581.t1
chr1.2 exon 62028621 62028739 62028621 ID=MS.gene07581.t1.exon2;Parent=MS.gene07581.t1
chr1.2 CDS 62028621 62028739 62028621 ID=cds.MS.gene07581.t1;Parent=MS.gene07581.t1
chr1.2 exon 62030813 62031239 62030813 ID=MS.gene07581.t1.exon3;Parent=MS.gene07581.t1
chr1.2 CDS 62030813 62031239 62030813 ID=cds.MS.gene07581.t1;Parent=MS.gene07581.t1
Gene Sequence

>MS.gene07581

ATGACAGAGATTCAGGATTTGCCGGAAGGATGCATCGCCGCCATAGTCTCTCGTACAACTCTACTCGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCGATCTGCCTCCGATTCTGACGCTGTATGGAATCGTTTTCTACCTTCTGATATTTCATCTATCATCTCACACTCTCCTTTACTCGCCAACGCTCCTACCAAAAAAGATCTCTATCTTGCTCTATCTGATCGCCCTGTCATCATCGATCATGATAAAAAGGTGGTATTCTTTTTCCTGAGGCTTATTATTGTTGAAATGATTTTTTAAGATGTTTAGTTGGATGTGTTGAAATGCAGAGTTTTCAATTGGAGAAAAAGAGTGGAAAAAAGTGTTACATGCTTTCTGCTAGATCTCTTGCCATTGTTTGGGGTGATGATGAGCGCTATTGGAACTGGATTTCTATGCCTGATTCCAGGTTAGCTCTTGATTAACTCCTAATTAATAGGAACATAGTACTTGTTCTTGTTGGCCGAATCAAGCCATTATTGATTAGGGTCCGTTTGGTAAGACACACATTTGAGTTTATAGCCTGTAAGTTTGTATGACTAAAAAAGATCCGTTTGGTAACTGTCGTTTTCTCACAATCTATCTTATAGCTTATTTTTATGAGCTTATAGTGTGTTTAAGCTAATTCCAGTAGCTTATGGCTTATATATATCTTTCATCTCAATTTTACCCATGCAATCTTAATTGAAAAAATAAATATTAATTAAATATACCTTTATTTTGTCCTTTCATATTTTTTAAGAAACTTCAACCGCTAATTTTACTAAACACTATAAATTCAATCAACTAGCTTATCCTTTATTAGCTATAAGCTAGCTTATAGCTTATTAGCTATCCGCAATTTTTTTACCAAACAGAGTCATATCCTTTTTTTTATAGGCTTGAATGATTCTATTTCCCATGTTAGTGATCAATTACTGTTGATGGGTTCTAGGGCATTCAAAAGGAGTAACAAAGAGGTTGAGTGTGCTCTTTCCTCGTCTGATAAGAATTAACTGACTTTTGCTAGCTTCTAATCAAAGTTAGTGAAGAATGATTATATCAAAATTCATAGCTACCACCTCGGGTTCAAACCCCCAAATTTAAAGAACGTTCAGTCAAACAAGTGCTTGCAAAAAATTCTGATGACCCTGTGACTTAGAATTTGGAATCTGTTCCTCCATACACTTCAACTAAGTATCAGCAACACATATCCATGCTCTTCATCCAACTTCCGCTTGGAGCCCCAAGATCCTTCTTCTGTAGCTCTGCGGTTTTTGCTTCATCTGCTGACTTTCCTTTTTTGTGTTCCTAATTGCTGCGGCAACCGAACCTATTTATTTTTTAATGCATCATTTTACCAAAAATTATAAAAATCAGACCAATTTGTTTGTTGCATTACAACTAAAATGTAGTTCTTATTTTAAGACTTGTTATATCTACACATGTTCATGGCGAATTGATTGTGCATTATTTGTTTTCCATTCCTTTGTTCAAGTTAAAATTGATTTCTATAAAGTCATATCTGTAAACTTCTATTCCATTATTTTATTTGTCGAGTACTTCATCATTCAGGATAGCAGGTGGTCTTTGAGGAAAACTGATGATGTTCATGGTCATCATTTTTGTCGTGGTCACTACACTCAAGTTGTATTGAATTCCCCATTTTCTGACATTTGCTCCACATAATATAGTTTCAAAAAGTTGAACAATGTACTCAATAATCTCGAGTTGACTATTAGTCTCCAAAATGTTTTTACTTTTAGTGTGACTGGTAGAATACATACAATTTCTAGACCTGCATCAGTTATGATGTCAACTAAATGAGTAAGGAGGTTTTAGTCTTGGCGGTCGTAGTCTTCATCTTGATACAGTGTTATCTGCTCAGATATTTGAAATGAACAGTTGGCTAGGTAACTTCATCCTTACACTATCAGGCCTATGTAGAAGTTTACTAGGCCACATGTATGGACACTGGACATACATTGAAGATGCACAGCATGTACCCATGTTTTCTTTGAGACTTAACGTATTGTTATGGAATCCCATTGAATTACCATGGCTATTATATCTTTTGCATAATGTTGTCATTTGTCCAACTCCAACTCTTATGTTGTGACAATCGAGCAGTTGTATATGTTGCTTATATATACACACTTATCATGAGAAAGTGAGGCATGTAGAAAAGTCGATGTCCTTTAAGTATGGGAGAAAATGAATGTTGGATTTCCTGAAACAGCATATATTACTTATTCACTGAGAAGTCTGTCATTTTGTTTCAGCTTGAAATACTTAAGTTGTGCTTCGTAACAGCCTCCAAAATTTAGTTAACGATCCTGCACTGTTAATTTATCAACCCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTCTGTCTGTCATGTAATGAAACAATTCTCTCAGTTATTATGTTCTAATCTTTGCATCTTCTGTGTACTACTTTTGGACAGGTTCCCTGAAGTCGCTAAGCTTGTTGATGTGTGTTGGCTTGAAATTCATGGTGTGATAAACACCATCGTCCTGTCCCCAAATACTCAATATGCGGCTTATGTTGTGTTCAAAATGATTAATGCTTCGGGATTTCTGAACCGTCCTGCGGATTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGGTAGGCCGCAGCCGCATGACAGAGTACTCGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGGGAGTTCTTCAATTCGGGCATAGAAAATGAAGAAATCCAGATGAATGTGATACAGACAAGGGGTGGTAATTGGAAGAGAGGTCTCGTTCTTGAAGGAATAGAAGTTAGGCCTAAGTATAACAATTAA
Protein sequence

>MS.gene07581.t1

MTEIQDLPEGCIAAIVSRTTLLDAGRLSVVSKTFRSASDSDAVWNRFLPSDISSIISHSPLLANAPTKKDLYLALSDRPVIIDHDKKSFQLEKKSGKKCYMLSARSLAIVWGDDERYWNWISMPDSRFPEVAKLVDVCWLEIHGVINTIVLSPNTQYAAYVVFKMINASGFLNRPADLSVGVEGGQSSTKIVCLDPNVEGRPQPHDRVLGLQRPSVRSDGWLEIEMGEFFNSGIENEEIQMNVIQTRGGNWKRGLVLEGIEVRPKYNN