AlfalfaGEDB | MS.gene74872

M. sativa cultivar XinJiangDaYe / MS.gene74872

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF14299.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74872.t1	XP_003590889.1	95.7	276	11	1	1	276	1	275	1.70E-147	531.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74872.t1	Q9FLU7	39.1	276	135	7	4	276	3	248	4.8e-42	172.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74872.t1	G7I5L9	95.7	276	11	1	1	276	1	275	1.2e-147	531.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene74911	MS.gene74872	PPI
MS.gene74873	MS.gene74872	PPI
MS.gene49088	MS.gene74872	PPI
MS.gene74872	MS.gene006298	PPI
MS.gene74872	MS.gene49185	PPI
MS.gene74872	MS.gene005552	PPI
MS.gene74872	MS.gene009359	PPI
MS.gene74872	MS.gene005012	PPI
MS.gene74872	MS.gene41430	PPI
MS.gene07559	MS.gene74872	PPI
MS.gene49186	MS.gene74872	PPI
MS.gene74872	MS.gene005032	PPI
MS.gene74872	MS.gene005033	PPI
MS.gene74872	MS.gene41433	PPI
MS.gene74876	MS.gene74872	PPI
MS.gene74872	MS.gene88931	PPI
MS.gene74872	MS.gene67769	PPI
MS.gene74872	MS.gene006294	PPI
MS.gene74872	MS.gene005027	PPI
MS.gene74872	MS.gene74880	PPI
MS.gene74872	MS.gene07585	PPI
MS.gene74872	MS.gene74875	PPI
MS.gene74872	MS.gene07586	PPI
MS.gene74872	MS.gene07571	PPI
MS.gene74872	MS.gene005068	PPI
MS.gene74872	MS.gene51496	PPI
MS.gene74872	MS.gene49090	PPI
MS.gene07583	MS.gene74872	PPI
MS.gene74872	MS.gene74877	PPI
MS.gene74872	MS.gene005066	PPI
MS.gene74872	MS.gene07556	PPI
MS.gene74872	MS.gene069492	PPI
MS.gene74872	MS.gene95381	PPI
MS.gene74872	MS.gene24084	PPI
MS.gene52532	MS.gene74872	PPI
MS.gene74872	MS.gene005028	PPI
MS.gene74872	MS.gene005035	PPI
MS.gene74872	MS.gene52530	PPI
MS.gene74872	MS.gene07569	PPI
MS.gene74860	MS.gene74872	PPI
MS.gene74859	MS.gene74872	PPI
MS.gene74863	MS.gene74872	PPI
MS.gene005019	MS.gene74872	PPI
MS.gene74872	MS.gene058615	PPI
MS.gene74872	MS.gene94933	PPI
MS.gene74872	MS.gene96708	PPI
MS.gene74872	MS.gene43943	PPI
MS.gene74872	MS.gene51487	PPI
MS.gene74872	MS.gene058740	PPI
MS.gene74872	MS.gene006296	PPI
MS.gene74872	MS.gene005020	PPI
MS.gene74872	MS.gene07578	PPI
MS.gene74872	MS.gene63582	PPI
MS.gene74872	MS.gene49085	PPI
MS.gene74872	MS.gene74881	PPI
MS.gene74872	MS.gene74867	PPI
MS.gene74872	MS.gene49086	PPI
MS.gene74872	MS.gene34488	PPI
MS.gene74872	MS.gene04280	PPI
MS.gene74872	MS.gene74913	PPI
MS.gene059798	MS.gene74872	PPI
MS.gene74872	MS.gene000006	PPI
MS.gene74872	MS.gene005013	PPI
MS.gene74872	MS.gene07250	PPI
MS.gene74872	MS.gene74873	PPI
MS.gene74872	MS.gene27114	PPI
MS.gene005030	MS.gene74872	PPI
MS.gene74872	MS.gene52533	PPI
MS.gene005023	MS.gene74872	PPI
MS.gene51502	MS.gene74872	PPI
MS.gene74872	MS.gene74864	PPI
MS.gene74872	MS.gene07580	PPI
MS.gene74872	MS.gene07557	PPI
MS.gene74872	MS.gene74912	PPI
MS.gene74872	MS.gene005034	PPI
MS.gene74872	MS.gene07572	PPI
MS.gene74872	MS.gene74868	PPI
MS.gene74872	MS.gene41431	PPI
MS.gene67762	MS.gene74872	PPI
MS.gene74872	MS.gene74998	PPI
MS.gene74872	MS.gene07577	PPI
MS.gene34490	MS.gene74872	PPI
MS.gene74872	MS.gene07581	PPI
MS.gene74872	MS.gene068736	PPI
MS.gene74878	MS.gene74872	PPI
MS.gene74872	MS.gene07555	PPI
MS.gene74872	MS.gene74858	PPI
MS.gene74872	MS.gene43942	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74872.t1	MTR_1g079350	95.652	276	11	1	1	276	1	275	0.0	545
MS.gene74872.t1	MTR_1g079180	61.011	277	95	6	1	276	1	265	6.50e-104	303
MS.gene74872.t1	MTR_1g079460	60.145	276	100	5	1	276	1	266	2.68e-101	296
MS.gene74872.t1	MTR_1g079340	58.703	293	97	8	1	276	40	325	2.35e-100	296
MS.gene74872.t1	MTR_1g079370	58.123	277	103	6	1	276	1	265	4.57e-100	293
MS.gene74872.t1	MTR_1g079200	60.072	278	95	7	1	276	1	264	4.24e-98	288
MS.gene74872.t1	MTR_1g079260	54.286	280	116	5	1	276	1	272	4.76e-95	281
MS.gene74872.t1	MTR_1g100597	56.140	285	103	7	1	276	1	272	2.75e-93	276
MS.gene74872.t1	MTR_1g026510	53.819	288	116	8	1	276	1	283	9.00e-90	268
MS.gene74872.t1	MTR_1g079350	94.737	133	7	0	1	133	1	133	1.67e-88	262
MS.gene74872.t1	MTR_1g079380	54.874	277	112	6	1	276	1	265	9.70e-87	261
MS.gene74872.t1	MTR_3g452600	54.480	279	100	9	4	276	10	267	5.92e-86	258
MS.gene74872.t1	MTR_1g079250	54.064	283	118	8	1	276	1	278	2.21e-84	255
MS.gene74872.t1	MTR_3g006850	47.588	311	117	6	2	276	15	315	5.52e-82	249
MS.gene74872.t1	MTR_1g079850	51.536	293	113	9	1	276	1	281	4.50e-81	246
MS.gene74872.t1	MTR_1g079230	48.789	289	119	6	1	276	1	273	1.16e-75	232
MS.gene74872.t1	MTR_1g100613	54.065	246	90	6	20	253	5	239	6.58e-75	229
MS.gene74872.t1	MTR_3g450990	48.123	293	113	10	4	276	10	283	1.14e-73	227
MS.gene74872.t1	MTR_2g079100	49.638	276	112	9	3	273	8	261	8.62e-71	219
MS.gene74872.t1	MTR_7g096300	52.075	265	105	9	1	261	1	247	1.18e-64	215
MS.gene74872.t1	MTR_1g079410	44.086	279	141	5	2	276	6	273	1.84e-62	198
MS.gene74872.t1	MTR_1g079140	39.799	299	149	6	4	276	13	306	1.08e-58	189
MS.gene74872.t1	MTR_7g112550	40.418	287	141	12	7	276	10	283	2.33e-49	165
MS.gene74872.t1	MTR_1g079400	37.329	292	144	8	2	276	10	279	1.36e-48	162
MS.gene74872.t1	MTR_1g083580	36.749	283	158	7	5	276	9	281	2.84e-48	162
MS.gene74872.t1	MTR_7g112560	37.184	277	150	8	4	276	1	257	5.60e-48	160
MS.gene74872.t1	MTR_4g023570	35.507	276	136	8	4	276	1	237	1.14e-43	149
MS.gene74872.t1	MTR_1g078470	45.918	196	93	6	81	276	2	184	2.02e-41	141
MS.gene74872.t1	MTR_1g079240	47.059	187	80	5	90	276	12	179	3.51e-41	140
MS.gene74872.t1	MTR_2g042540	60.748	107	39	2	1	106	1	105	2.70e-33	118
MS.gene74872.t1	MTR_1g076870	47.826	138	49	3	133	253	2	133	1.83e-30	111
MS.gene74872.t1	MTR_1g078460	60.000	90	33	1	1	90	64	150	2.15e-25	99.0
MS.gene74872.t1	MTR_1g079130	37.056	197	92	8	104	276	1	189	6.03e-24	96.3
MS.gene74872.t1	MTR_7g096310	48.800	125	50	4	58	172	24	144	9.82e-24	94.7
MS.gene74872.t1	MTR_1g079210	44.000	125	59	2	134	249	7	129	3.11e-23	92.8
MS.gene74872.t1	MTR_3g058640	47.788	113	51	4	128	239	1	106	6.36e-21	85.5
MS.gene74872.t1	MTR_7g103380	24.314	255	162	6	3	245	18	253	1.63e-13	69.7
MS.gene74872.t1	MTR_0113s0040	25.500	200	133	4	2	189	20	215	3.82e-13	68.6
MS.gene74872.t1	MTR_4g102770	25.243	206	139	3	6	199	21	223	4.90e-13	68.2
MS.gene74872.t1	MTR_5g010800	28.155	206	118	9	6	192	19	213	1.75e-12	66.6
MS.gene74872.t1	MTR_1g101390	30.667	150	96	4	2	149	26	169	3.95e-12	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74872.t1	AT1G80110	38.662	269	148	4	7	275	4	255	9.92e-51	167
MS.gene74872.t1	AT2G02360	37.545	277	150	8	2	275	12	268	1.70e-49	165
MS.gene74872.t1	AT2G02250	38.129	278	145	9	4	275	47	303	4.33e-49	165
MS.gene74872.t1	AT2G02240	37.455	275	154	8	2	275	59	316	1.23e-45	156
MS.gene74872.t1	AT2G02340	37.770	278	161	7	1	275	33	301	1.35e-45	155
MS.gene74872.t1	AT1G56240	38.462	286	150	9	7	275	4	280	1.65e-45	155
MS.gene74872.t1	AT2G02230	32.911	316	155	11	4	276	32	333	4.84e-44	152
MS.gene74872.t1	AT1G56250	38.328	287	151	9	7	276	4	281	1.48e-43	149
MS.gene74872.t1	AT1G09155	35.315	286	161	9	7	276	3	280	1.48e-41	145
MS.gene74872.t1	AT2G02300	34.520	281	147	8	2	276	32	281	3.21e-39	138
MS.gene74872.t1	AT2G02350	32.852	277	167	7	2	275	22	282	1.66e-37	134
MS.gene74872.t1	AT2G02310	31.655	278	171	7	2	276	43	304	3.27e-37	134
MS.gene74872.t1	AT2G02320	33.942	274	160	8	6	275	42	298	5.79e-37	133
MS.gene74872.t1	AT5G24560	43.333	150	69	6	4	149	3	140	3.57e-29	110
MS.gene74872.t1	AT3G53000	25.524	286	179	8	3	275	20	284	1.38e-15	75.5
MS.gene74872.t1	AT1G63090	25.238	210	138	5	3	199	25	228	3.12e-14	71.6
MS.gene74872.t1	AT1G12710	26.066	211	135	6	3	199	27	230	7.85e-14	70.5
MS.gene74872.t1	AT3G61060	28.472	144	100	2	6	149	27	167	8.08e-14	70.5
MS.gene74872.t1	AT3G61060	29.861	144	97	3	6	149	27	166	3.62e-13	68.6
MS.gene74872.t1	AT2G02350	29.143	175	111	6	104	275	1	165	9.02e-13	65.5

Find 65 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGCCAATTCCGACGAAGTA+TGG	0.211519	1.1:-58946913	MS.gene74872:CDS
TACGCCACATACTGAGTATT+TGG	0.214019	1.1:+58945294	None:intergenic
TTTGGATTTCTTCATATTCT+AGG	0.214179	1.1:+58945037	None:intergenic
CATTGGCAAGGGAAGGAAAT+TGG	0.240771	1.1:+58946843	None:intergenic
ATTCCATACTTCGTCGGAAT+TGG	0.295629	1.1:+58946910	None:intergenic
TTCAAGATGGCTGATGTCTT+TGG	0.297218	1.1:-58945264	MS.gene74872:CDS
ATTGGGGAGTTCTTCAATTT+AGG	0.298698	1.1:-58945060	MS.gene74872:CDS
TCTCGACATTAACATTCATT+TGG	0.342853	1.1:+58945019	None:intergenic
TGATTCCCATGCATCATTCC+AGG	0.367183	1.1:-58946566	MS.gene74872:intron
GAATGTTAATGTCGAGATAA+AGG	0.367552	1.1:-58945013	MS.gene74872:CDS
GGCGGCAGAACGGAAGGTTT+TGG	0.368079	1.1:+58946931	None:intergenic
CAAAAGAATGGCGGCGTTTG+AGG	0.380046	1.1:-58947029	None:intergenic
ACGCCACATACTGAGTATTT+GGG	0.381358	1.1:+58945295	None:intergenic
TCATCAAGCTCAGCAACTTC+AGG	0.390519	1.1:+58945366	None:intergenic
AGATGACAGTGTCGATGAAT+TGG	0.394916	1.1:+58946867	None:intergenic
CTGAGCTTGATGATGTTTGT+GGG	0.398290	1.1:-58945356	MS.gene74872:CDS
TAGTTGATGGAATAGAAGTT+AGG	0.404080	1.1:-58944966	MS.gene74872:CDS
TGAAATGTAGAGCTTTCAAT+TGG	0.411607	1.1:-58946679	MS.gene74872:intron
GGTGGTTTGAGATTGAGATT+GGG	0.419831	1.1:-58945077	MS.gene74872:CDS
GGGTGGTTTGAGATTGAGAT+TGG	0.426113	1.1:-58945078	MS.gene74872:CDS
CCATACTTCGTCGGAATTGG+CGG	0.433366	1.1:+58946913	None:intergenic
ATTGGCAAGGGAAGGAAATT+GGG	0.445945	1.1:+58946844	None:intergenic
AGATCTCTCACATTTGATGA+TGG	0.452005	1.1:-58946618	MS.gene74872:CDS
GCTGAGCTTGATGATGTTTG+TGG	0.455966	1.1:-58945357	MS.gene74872:CDS
GATGACAGTGTCGATGAATT+GGG	0.463732	1.1:+58946868	None:intergenic
TGTATCCAAATGTAGAAAGT+AGG	0.464992	1.1:-58945164	MS.gene74872:CDS
GTTGCTTAATTATCTTACTT+AGG	0.474152	1.1:+58944943	None:intergenic
GGCGGCGTTTGAGGAATTGC+CGG	0.482289	1.1:-58947020	MS.gene74872:CDS
GTATCCAAATGTAGAAAGTA+GGG	0.487141	1.1:-58945163	MS.gene74872:CDS
GTTTGTGGGATTGACATTTG+TGG	0.490073	1.1:-58945342	MS.gene74872:CDS
GTAGCATTATTATGATAATG+AGG	0.491702	1.1:+58945198	None:intergenic
ATAGCGGCAACACATTCTTC+CGG	0.493919	1.1:+58947001	None:intergenic
ATCAAAATATGTTTCCATTG+AGG	0.513426	1.1:+58946585	None:intergenic
GAGAGTCTGACGGCGTCAAA+CGG	0.520309	1.1:+58946962	None:intergenic
TTGTCTAGAGCGAGAAGCGA+TGG	0.524530	1.1:-58945099	MS.gene74872:CDS
GTTAATGTCGAGATAAAGGA+TGG	0.526633	1.1:-58945009	MS.gene74872:CDS
GACGATCTTCAGTGATGATA+CGG	0.526769	1.1:+58946780	None:intergenic
GGGCACAAGAACAGTGAAGT+AGG	0.547355	1.1:-58945141	MS.gene74872:CDS
GTGGAAGCATTGGCAAGGGA+AGG	0.550597	1.1:+58946836	None:intergenic
AGCAAACCTGGAATGATGCA+TGG	0.553504	1.1:+58946560	None:intergenic
AGTGTCGATGAATTGGGAAT+CGG	0.553699	1.1:+58946874	None:intergenic
GTGGTTTGAGATTGAGATTG+GGG	0.561075	1.1:-58945076	MS.gene74872:CDS
GTCCCCAAATACTCAGTATG+TGG	0.561633	1.1:-58945298	MS.gene74872:CDS
TTTCAATTGGATAGAAAGAG+TGG	0.567809	1.1:-58946666	MS.gene74872:CDS
GGAATTGGCGGCAGAACGGA+AGG	0.580414	1.1:+58946925	None:intergenic
ACACGAACTGTGAATTCCAC+AGG	0.583835	1.1:+58945228	None:intergenic
GCAAACCTGGAATGATGCAT+GGG	0.587407	1.1:+58946561	None:intergenic
TGGACTTAATAGAATTCCTG+TGG	0.589791	1.1:-58945244	MS.gene74872:CDS
AAATTGATTCCATACTTCGT+CGG	0.591438	1.1:+58946904	None:intergenic
AGTATTTGGGGACAAGGCAA+TGG	0.593174	1.1:+58945308	None:intergenic
CGTCGGAATTGGCGGCAGAA+CGG	0.600254	1.1:+58946921	None:intergenic
TGTGGAATTCACAGTTCGTG+TGG	0.604190	1.1:-58945226	MS.gene74872:CDS
CGATGAATTGGGAATCGGAA+GGG	0.622940	1.1:+58946879	None:intergenic
CGCCACATACTGAGTATTTG+GGG	0.628472	1.1:+58945296	None:intergenic
TGTCTAGAGCGAGAAGCGAT+GGG	0.636331	1.1:-58945098	MS.gene74872:CDS
TATCCAAATGTAGAAAGTAG+GGG	0.637003	1.1:-58945162	MS.gene74872:CDS
CATCACTGAAGATCGTCGAA+AGG	0.642352	1.1:-58946774	MS.gene74872:intron
ATACTGAGTATTTGGGGACA+AGG	0.645914	1.1:+58945302	None:intergenic
ATCCAAATGTAGAAAGTAGG+GGG	0.657805	1.1:-58945161	MS.gene74872:CDS
GGCGTATCTTGTGTTCAAGA+TGG	0.658111	1.1:-58945277	MS.gene74872:CDS
TCGATGAATTGGGAATCGGA+AGG	0.660363	1.1:+58946878	None:intergenic
CTAGAGCGAGAAGCGATGGG+TGG	0.660567	1.1:-58945095	MS.gene74872:CDS
GGAAACGAGAGAGAGTCTGA+CGG	0.685849	1.1:+58946952	None:intergenic
TCTGACGGCGTCAAACGGAG+TGG	0.714597	1.1:+58946967	None:intergenic
AGTGGTACGAGAGAGTATAG+CGG	0.806673	1.1:+58946985	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAATATAATTATATATGTGT+CGG	+	chr1.1:58945569-58945588	None:intergenic	15.0%
!!	TAAGTTATATATGCTATTAT+AGG	+	chr1.1:58946383-58946402	None:intergenic	15.0%
!!!	AATTTAATGATGTTTTCTTT+CGG	-	chr1.1:58946149-58946168	MS.gene74872:intron	15.0%
!!	AATAGACTAATATATAGATG+AGG	+	chr1.1:58946007-58946026	None:intergenic	20.0%
!!	ACTAGTAGAATACAATTATA+TGG	-	chr1.1:58945913-58945932	MS.gene74872:intron	20.0%
!!	ATAATGAGAAAATGATAGTT+TGG	+	chr1.1:58945727-58945746	None:intergenic	20.0%
!!	TAATGAGAAAATGATAGTTT+GGG	+	chr1.1:58945726-58945745	None:intergenic	20.0%
!!	TCCTTGTAAAAAAAAAACAT+GGG	+	chr1.1:58945676-58945695	None:intergenic	20.0%
!!	TTCCTTGTAAAAAAAAAACA+TGG	+	chr1.1:58945677-58945696	None:intergenic	20.0%
!!!	TTATTTGAAACTAAACTATG+CGG	+	chr1.1:58945815-58945834	None:intergenic	20.0%
!!!	TTTTAAGAAGTAAAACGTTT+TGG	+	chr1.1:58945881-58945900	None:intergenic	20.0%
!	AAAGATTATAATGTAGGAAC+TGG	+	chr1.1:58946562-58946581	None:intergenic	25.0%
!	AAGATTATAATGTAGGAACT+GGG	+	chr1.1:58946561-58946580	None:intergenic	25.0%
!	AATTGAGGTATGTAGAAAAA+TGG	-	chr1.1:58946319-58946338	MS.gene74872:intron	25.0%
!	AGATGCAAAGATTATAATGT+AGG	+	chr1.1:58946568-58946587	None:intergenic	25.0%
!	AGTTATGCTGTTAACAAAAT+GGG	-	chr1.1:58945956-58945975	MS.gene74872:intron	25.0%
!	AGTTCATTGTATACTAATAG+TGG	-	chr1.1:58945269-58945288	MS.gene74872:CDS	25.0%
!	ATAAAGTTTGACAATGTACT+CGG	-	chr1.1:58945831-58945850	MS.gene74872:intron	25.0%
!	ATCAAAATATGTTTCCATTG+AGG	+	chr1.1:58945397-58945416	None:intergenic	25.0%
!	CAGGTTCATTAACTAAAAAT+TGG	+	chr1.1:58946472-58946491	None:intergenic	25.0%
!	GACAAATGAAGAATCTATAT+AGG	+	chr1.1:58946515-58946534	None:intergenic	25.0%
!	GTAAGATAAATTAACAGTAC+AGG	+	chr1.1:58946491-58946510	None:intergenic	25.0%
!	GTTCATTAACTAAAAATTGG+AGG	+	chr1.1:58946469-58946488	None:intergenic	25.0%
!	TGAAATACTTCAGTTATTCT+TGG	-	chr1.1:58946437-58946456	MS.gene74872:intron	25.0%
!	TTCCAATTTCTCCAATATTA+GGG	-	chr1.1:58945236-58945255	MS.gene74872:CDS	25.0%
!	TTTGGATTTCTTCATATTCT+AGG	+	chr1.1:58946945-58946964	None:intergenic	25.0%
!!	GTAGCATTATTATGATAATG+AGG	+	chr1.1:58946784-58946803	None:intergenic	25.0%
!!!	ACCCATGTTTTTTTTTTACA+AGG	-	chr1.1:58945672-58945691	MS.gene74872:intron	25.0%
	AAATGGATGTCCTTTAAGTA+AGG	-	chr1.1:58946336-58946355	MS.gene74872:intron	30.0%
	AACCCTAATATTGGAGAAAT+TGG	+	chr1.1:58945241-58945260	None:intergenic	30.0%
	AATGGATGTCCTTTAAGTAA+GGG	-	chr1.1:58946337-58946356	MS.gene74872:intron	30.0%
	ACACTTATCATGAGAAATTG+AGG	-	chr1.1:58946304-58946323	MS.gene74872:intron	30.0%
	ACTTGAGTATAATGTGAACA+TGG	+	chr1.1:58945759-58945778	None:intergenic	30.0%
	ATAATGTGAACATGGTAACA+TGG	+	chr1.1:58945751-58945770	None:intergenic	30.0%
	ATGATAGTTTGGGTGAATAA+TGG	+	chr1.1:58945716-58945735	None:intergenic	30.0%
	CAGTTATGCTGTTAACAAAA+TGG	-	chr1.1:58945955-58945974	MS.gene74872:intron	30.0%
	CTTCCAATTTCTCCAATATT+AGG	-	chr1.1:58945235-58945254	MS.gene74872:CDS	30.0%
	GAATGTTAATGTCGAGATAA+AGG	-	chr1.1:58946966-58946985	MS.gene74872:CDS	30.0%
	GTATCCAAATGTAGAAAGTA+GGG	-	chr1.1:58946816-58946835	MS.gene74872:CDS	30.0%
	GTTATGCTGTTAACAAAATG+GGG	-	chr1.1:58945957-58945976	MS.gene74872:intron	30.0%
	TATCCAAATGTAGAAAGTAG+GGG	-	chr1.1:58946817-58946836	MS.gene74872:CDS	30.0%
	TCAACGATAAACCCTAATAT+TGG	+	chr1.1:58945250-58945269	None:intergenic	30.0%
	TCAATTTCTCATGATAAGTG+TGG	+	chr1.1:58946305-58946324	None:intergenic	30.0%
	TCTCGACATTAACATTCATT+TGG	+	chr1.1:58946963-58946982	None:intergenic	30.0%
	TGAAATGTAGAGCTTTCAAT+TGG	-	chr1.1:58945300-58945319	MS.gene74872:CDS	30.0%
	TGTATCCAAATGTAGAAAGT+AGG	-	chr1.1:58946815-58946834	MS.gene74872:CDS	30.0%
	TTGTGACAAAATAATAGCCT+AGG	+	chr1.1:58946256-58946275	None:intergenic	30.0%
	TTTCAATTGGATAGAAAGAG+TGG	-	chr1.1:58945313-58945332	MS.gene74872:CDS	30.0%
!	AAATTGATTCCATACTTCGT+CGG	+	chr1.1:58945078-58945097	None:intergenic	30.0%
!	CATTTTGTTAACAGCATAAC+TGG	+	chr1.1:58945957-58945976	None:intergenic	30.0%
!!	TAGTTGATGGAATAGAAGTT+AGG	-	chr1.1:58947013-58947032	MS.gene74872:CDS	30.0%
!!	TTTTCGTACTACTTTTGGAT+AGG	-	chr1.1:58946587-58946606	MS.gene74872:CDS	30.0%
!!!	ATGGTTTTTTATTGCCTCAA+TGG	-	chr1.1:58945380-58945399	MS.gene74872:intron	30.0%
!!!	TTCGGATTTTATTTTTGCCA+TGG	-	chr1.1:58946167-58946186	MS.gene74872:intron	30.0%
	ACATGATACCAATCAAACAC+CGG	+	chr1.1:58945540-58945559	None:intergenic	35.0%
	AGAAAAGTTAAGAGCAAACC+TGG	+	chr1.1:58945434-58945453	None:intergenic	35.0%
	AGATCTCTCACATTTGATGA+TGG	-	chr1.1:58945361-58945380	MS.gene74872:CDS	35.0%
	ATCCAAATGTAGAAAGTAGG+GGG	-	chr1.1:58946818-58946837	MS.gene74872:CDS	35.0%
	ATTGGGGAGTTCTTCAATTT+AGG	-	chr1.1:58946919-58946938	MS.gene74872:CDS	35.0%
	GTGCTTCATAGCTACTTATT+GGG	+	chr1.1:58945491-58945510	None:intergenic	35.0%
	GTTAATGTCGAGATAAAGGA+TGG	-	chr1.1:58946970-58946989	MS.gene74872:CDS	35.0%
	TAACCTTCTCCCTTACTTAA+AGG	+	chr1.1:58946349-58946368	None:intergenic	35.0%
	TAATAGCCTAGGTAATTCAC+TGG	+	chr1.1:58946245-58946264	None:intergenic	35.0%
	TGGACTTAATAGAATTCCTG+TGG	-	chr1.1:58946735-58946754	MS.gene74872:intron	35.0%
	TTGAAACTAAACTATGCGGA+AGG	+	chr1.1:58945811-58945830	None:intergenic	35.0%
!	ACGTCTGACAGTAGAATTTT+TGG	+	chr1.1:58946197-58946216	None:intergenic	35.0%
!	GCATCTTTTCGTACTACTTT+TGG	-	chr1.1:58946582-58946601	MS.gene74872:CDS	35.0%
!!	AACACACGTCTTTTAGTTGA+TGG	-	chr1.1:58947000-58947019	MS.gene74872:CDS	35.0%
!!!	ATCCTTTTTTGTGGAAGCAT+TGG	+	chr1.1:58945156-58945175	None:intergenic	35.0%
!!!	GAGATAGAGATCCTTTTTTG+TGG	+	chr1.1:58945165-58945184	None:intergenic	35.0%
!!!	GTAGAATTTTTGGCATTCCA+TGG	+	chr1.1:58946187-58946206	None:intergenic	35.0%
	AAGCACCTATACTCGGATTA+GGG	-	chr1.1:58945505-58945524	MS.gene74872:intron	40.0%
	ACGCCACATACTGAGTATTT+GGG	+	chr1.1:58946687-58946706	None:intergenic	40.0%
	AGCTAACTAGGTTACATGTG+TGG	-	chr1.1:58946098-58946117	MS.gene74872:intron	40.0%
	ATACTGAGTATTTGGGGACA+AGG	+	chr1.1:58946680-58946699	None:intergenic	40.0%
	ATTCCATACTTCGTCGGAAT+TGG	+	chr1.1:58945072-58945091	None:intergenic	40.0%
	ATTGGCAAGGGAAGGAAATT+GGG	+	chr1.1:58945138-58945157	None:intergenic	40.0%
	CGGAAGGAATGTTTGACTAT+GGG	+	chr1.1:58945795-58945814	None:intergenic	40.0%
	CTTCATAGCTACTTATTGGG+TGG	+	chr1.1:58945488-58945507	None:intergenic	40.0%
	GAAGGAATGTTTGACTATGG+GGG	+	chr1.1:58945793-58945812	None:intergenic	40.0%
	GACGATCTTCAGTGATGATA+CGG	+	chr1.1:58945202-58945221	None:intergenic	40.0%
	GGAAGGAATGTTTGACTATG+GGG	+	chr1.1:58945794-58945813	None:intergenic	40.0%
	GGTGCTTCATAGCTACTTAT+TGG	+	chr1.1:58945492-58945511	None:intergenic	40.0%
	GTTAACAGCATAACTGGTGT+AGG	+	chr1.1:58945951-58945970	None:intergenic	40.0%
	GTTTGTGGGATTGACATTTG+TGG	-	chr1.1:58946637-58946656	MS.gene74872:CDS	40.0%
	TACGCCACATACTGAGTATT+TGG	+	chr1.1:58946688-58946707	None:intergenic	40.0%
	TGCCAATGCTTCCACAAAAA+AGG	-	chr1.1:58945151-58945170	MS.gene74872:CDS	40.0%
	TGTCCTTTAAGTAAGGGAGA+AGG	-	chr1.1:58946343-58946362	MS.gene74872:intron	40.0%
	TGTTGACACGTCTGTATTTG+AGG	-	chr1.1:58945620-58945639	MS.gene74872:intron	40.0%
	TTCAAGATGGCTGATGTCTT+TGG	-	chr1.1:58946715-58946734	MS.gene74872:intron	40.0%
!	AACCTAGTTAGCTTCTACAC+AGG	+	chr1.1:58946091-58946110	None:intergenic	40.0%
!	AGATATTTGAAATGCACCCC+CGG	-	chr1.1:58946035-58946054	MS.gene74872:intron	40.0%
!	AGCTATGAAGCACCTATACT+CGG	-	chr1.1:58945498-58945517	MS.gene74872:intron	40.0%
!	GGTGGTTTGAGATTGAGATT+GGG	-	chr1.1:58946902-58946921	MS.gene74872:CDS	40.0%
!	GTGGTTTGAGATTGAGATTG+GGG	-	chr1.1:58946903-58946922	MS.gene74872:CDS	40.0%
!!	AGATGACAGTGTCGATGAAT+TGG	+	chr1.1:58945115-58945134	None:intergenic	40.0%
!!	AGTGTCGATGAATTGGGAAT+CGG	+	chr1.1:58945108-58945127	None:intergenic	40.0%
!!	CTGAGCTTGATGATGTTTGT+GGG	-	chr1.1:58946623-58946642	MS.gene74872:CDS	40.0%
!!	GATGACAGTGTCGATGAATT+GGG	+	chr1.1:58945114-58945133	None:intergenic	40.0%
!!!	TTTTGTGGAAGCATTGGCAA+GGG	+	chr1.1:58945150-58945169	None:intergenic	40.0%
!!!	TTTTTGTGGAAGCATTGGCA+AGG	+	chr1.1:58945151-58945170	None:intergenic	40.0%
	AAAGATGAAGTCACCCTAGC+CGG	+	chr1.1:58946057-58946076	None:intergenic	45.0%
	ACACGAACTGTGAATTCCAC+AGG	+	chr1.1:58946754-58946773	None:intergenic	45.0%
	AGCAAACCTGGAATGATGCA+TGG	+	chr1.1:58945422-58945441	None:intergenic	45.0%
	AGTATTTGGGGACAAGGCAA+TGG	+	chr1.1:58946674-58946693	None:intergenic	45.0%
	ATAGCGGCAACACATTCTTC+CGG	+	chr1.1:58944981-58945000	None:intergenic	45.0%
	CATCACTGAAGATCGTCGAA+AGG	-	chr1.1:58945205-58945224	MS.gene74872:CDS	45.0%
	CATTGGCAAGGGAAGGAAAT+TGG	+	chr1.1:58945139-58945158	None:intergenic	45.0%
	CGATGAATTGGGAATCGGAA+GGG	+	chr1.1:58945103-58945122	None:intergenic	45.0%
	CGCCACATACTGAGTATTTG+GGG	+	chr1.1:58946686-58946705	None:intergenic	45.0%
	GCAAACCTGGAATGATGCAT+GGG	+	chr1.1:58945421-58945440	None:intergenic	45.0%
	GCGGAAGGAATGTTTGACTA+TGG	+	chr1.1:58945796-58945815	None:intergenic	45.0%
	GGCGTATCTTGTGTTCAAGA+TGG	-	chr1.1:58946702-58946721	MS.gene74872:intron	45.0%
	GTCCCCAAATACTCAGTATG+TGG	-	chr1.1:58946681-58946700	MS.gene74872:intron	45.0%
	TCATCAAGCTCAGCAACTTC+AGG	+	chr1.1:58946616-58946635	None:intergenic	45.0%
	TCGATGAATTGGGAATCGGA+AGG	+	chr1.1:58945104-58945123	None:intergenic	45.0%
	TGATTCCCATGCATCATTCC+AGG	-	chr1.1:58945413-58945432	MS.gene74872:intron	45.0%
	TGCCCCCTACTTTCTACATT+TGG	+	chr1.1:58946823-58946842	None:intergenic	45.0%
	TGCCTGTGTAGAAGCTAACT+AGG	-	chr1.1:58946086-58946105	MS.gene74872:intron	45.0%
	TGTGGAATTCACAGTTCGTG+TGG	-	chr1.1:58946753-58946772	MS.gene74872:intron	45.0%
!	AGTGGTACGAGAGAGTATAG+CGG	+	chr1.1:58944997-58945016	None:intergenic	45.0%
!	GAAGCACCTATACTCGGATT+AGG	-	chr1.1:58945504-58945523	MS.gene74872:intron	45.0%
!	GGGTGGTTTGAGATTGAGAT+TGG	-	chr1.1:58946901-58946920	MS.gene74872:CDS	45.0%
!!	GCTGAGCTTGATGATGTTTG+TGG	-	chr1.1:58946622-58946641	MS.gene74872:CDS	45.0%
	AAGATGAAGTCACCCTAGCC+GGG	+	chr1.1:58946056-58946075	None:intergenic	50.0%
	ATTTGTCAAAGCAGCAGCCG+TGG	-	chr1.1:58946219-58946238	MS.gene74872:intron	50.0%
	CCATACTTCGTCGGAATTGG+CGG	+	chr1.1:58945069-58945088	None:intergenic	50.0%
	CCTAGGTAATTCACTGGCCA+CGG	+	chr1.1:58946239-58946258	None:intergenic	50.0%
	GGAAACGAGAGAGAGTCTGA+CGG	+	chr1.1:58945030-58945049	None:intergenic	50.0%
	GGGCACAAGAACAGTGAAGT+AGG	-	chr1.1:58946838-58946857	MS.gene74872:CDS	50.0%
!	TGTCTAGAGCGAGAAGCGAT+GGG	-	chr1.1:58946881-58946900	MS.gene74872:CDS	50.0%
!	TTGTCTAGAGCGAGAAGCGA+TGG	-	chr1.1:58946880-58946899	MS.gene74872:CDS	50.0%
	ACGCGCCCTAATCCGAGTAT+AGG	+	chr1.1:58945513-58945532	None:intergenic	55.0%
	AGATGAAGTCACCCTAGCCG+GGG	+	chr1.1:58946055-58946074	None:intergenic	55.0%
	CCGCCAATTCCGACGAAGTA+TGG	-	chr1.1:58945066-58945085	MS.gene74872:CDS	55.0%
	CCGTGGCCAGTGAATTACCT+AGG	-	chr1.1:58946236-58946255	MS.gene74872:intron	55.0%
	GAGAGTCTGACGGCGTCAAA+CGG	+	chr1.1:58945020-58945039	None:intergenic	55.0%
	GCGTGTCTCCGGTGTTTGAT+TGG	-	chr1.1:58945529-58945548	MS.gene74872:intron	55.0%
	TTGAAATGCACCCCCGGCTA+GGG	-	chr1.1:58946041-58946060	MS.gene74872:intron	55.0%
!	TTTGAAATGCACCCCCGGCT+AGG	-	chr1.1:58946040-58946059	MS.gene74872:intron	55.0%
!!	GTGGAAGCATTGGCAAGGGA+AGG	+	chr1.1:58945146-58945165	None:intergenic	55.0%
	CGTCGGAATTGGCGGCAGAA+CGG	+	chr1.1:58945061-58945080	None:intergenic	60.0%
	CTAGAGCGAGAAGCGATGGG+TGG	-	chr1.1:58946884-58946903	MS.gene74872:CDS	60.0%
	GATGAAGTCACCCTAGCCGG+GGG	+	chr1.1:58946054-58946073	None:intergenic	60.0%
	GGAATTGGCGGCAGAACGGA+AGG	+	chr1.1:58945057-58945076	None:intergenic	60.0%
	GGCGGCGTTTGAGGAATTGC+CGG	-	chr1.1:58944959-58944978	MS.gene74872:CDS	60.0%
	TCTGACGGCGTCAAACGGAG+TGG	+	chr1.1:58945015-58945034	None:intergenic	60.0%
!	GGCGGCAGAACGGAAGGTTT+TGG	+	chr1.1:58945051-58945070	None:intergenic	60.0%
!	CGGATTAGGGCGCGTGTCTC+CGG	-	chr1.1:58945518-58945537	MS.gene74872:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	58944957	58947044	58944957	ID=MS.gene74872
chr1.1	mRNA	58944957	58947044	58944957	ID=MS.gene74872.t1;Parent=MS.gene74872
chr1.1	exon	58946775	58947044	58946775	ID=MS.gene74872.t1.exon1;Parent=MS.gene74872.t1
chr1.1	CDS	58946775	58947044	58946775	ID=cds.MS.gene74872.t1;Parent=MS.gene74872.t1
chr1.1	exon	58946567	58946691	58946567	ID=MS.gene74872.t1.exon2;Parent=MS.gene74872.t1
chr1.1	CDS	58946567	58946691	58946567	ID=cds.MS.gene74872.t1;Parent=MS.gene74872.t1
chr1.1	exon	58944957	58945392	58944957	ID=MS.gene74872.t1.exon3;Parent=MS.gene74872.t1
chr1.1	CDS	58944957	58945392	58944957	ID=cds.MS.gene74872.t1;Parent=MS.gene74872.t1

Gene Sequence

>MS.gene74872

ATGGCGGCGTTTGAGGAATTGCCGGAAGAATGTGTTGCCGCTATACTCTCTCGTACCACTCCGTTTGACGCCGTCAGACTCTCTCTCGTTTCCAAAACCTTCCGTTCTGCCGCCAATTCCGACGAAGTATGGAATCAATTTCTCCCTTCCGATTCCCAATTCATCGACACTGTCATCTCCCAATTTCCTTCCCTTGCCAATGCTTCCACAAAAAAGGATCTCTATCTCGCTCTTTCTGATTGCCGTATCATCACTGAAGATCGTCGAAAGGTATTCTTCTTCCAATTTCTCCAATATTAGGGTTTATCGTTGAGTTCATTGTATACTAATAGTGGATACATGTTGAAATGTAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAATTGTTACATGATTGCTGCTAGATCTCTCACATTTGATGATGGTTTTTTATTGCCTCAATGGAAACATATTTTGATTCCCATGCATCATTCCAGGTTTGCTCTTAACTTTTCTATCTGTTTTGTTTTATTATTTTCTTATATTACCACCCAATAAGTAGCTATGAAGCACCTATACTCGGATTAGGGCGCGTGTCTCCGGTGTTTGATTGGTATCATGTCTGACACCGACACATATATAATTATATTCAATTATATCATTTTTCTTAAATTATTATTAATGTTGACACGTCTGTATTTGAGGTTTTGCTTCATAGATAAGTACTTACTAGTACCCATGTTTTTTTTTTACAAGGAAATTGAATTTCATGTTACCATTATTCACCCAAACTATCATTTTCTCATTATTCCATGTTACCATGTTCACATTATACTCAAGTTGTATTGAATTCCCCCATAGTCAAACATTCCTTCCGCATAGTTTAGTTTCAAATAAAGTTTGACAATGTACTCGGTAAACTCGAGTTGACTACTTGTTTCCAAAACGTTTTACTTCTTAAAAAAAAATTGTGTGACTAGTAGAATACAATTATATGGAATATTTCTAGACCTACACCAGTTATGCTGTTAACAAAATGGGGCAGCATTTGTCTTTGCATTGAACTCCTCATCTATATATTAGTCTATTATCTGCTCAGATATTTGAAATGCACCCCCGGCTAGGGTGACTTCATCTTTACATTTGCATGCCTGTGTAGAAGCTAACTAGGTTACATGTGTGGAAACTGTACACACATTGAAGATGCACTAAATTTAATGATGTTTTCTTTCGGATTTTATTTTTGCCATGGAATGCCAAAAATTCTACTGTCAGACGTTCATTTGTCAAAGCAGCAGCCGTGGCCAGTGAATTACCTAGGCTATTATTTTGTCACAATCAGCACTTGTCTATGTTGCTTATATCCACACTTATCATGAGAAATTGAGGTATGTAGAAAAATGGATGTCCTTTAAGTAAGGGAGAAGGTTAATGCTAGATTTCCTATAATAGCATATATAACTTACTAACTGAGATGTCTGTCATAATCAGTTTCAACTTGAAATACTTCAGTTATTCTTGGCAACAGCCTCCAATTTTTAGTTAATGAACCTGTACTGTTAATTTATCTTACACCTATATAGATTCTTCATTTGTCAGTGAACTACTTTCAACTTTTCTCCCAGTTCCTACATTATAATCTTTGCATCTTTTCGTACTACTTTTGGATAGGTTTCCTGAAGTTGCTGAGCTTGATGATGTTTGTGGGATTGACATTTGTGGTATGATAAACACCATTGCCTTGTCCCCAAATACTCAGTATGTGGCGTATCTTGTGTTCAAGATGGCTGATGTCTTTGGACTTAATAGAATTCCTGTGGAATTCACAGTTCGTGTGGAAAATCCTCATTATCATAATAATGCTACAATTGTCTGTTTGTATCCAAATGTAGAAAGTAGGGGGCACAAGAACAGTGAAGTAGGATTGCAACTAGTAGAAGTGTTGTCTAGAGCGAGAAGCGATGGGTGGTTTGAGATTGAGATTGGGGAGTTCTTCAATTTAGGCCTAGAATATGAAGAAATCCAAATGAATGTTAATGTCGAGATAAAGGATGGTTTTCTGAACACACGTCTTTTAGTTGATGGAATAGAAGTTAGGCCTAAGTAA

Protein sequence

>MS.gene74872.t1

MAAFEELPEECVAAILSRTTPFDAVRLSLVSKTFRSAANSDEVWNQFLPSDSQFIDTVISQFPSLANASTKKDLYLALSDCRIITEDRRKSFQLDRKSGKNCYMIAARSLTFDDGFLLPQWKHILIPMHHSRFPEVAELDDVCGIDICGMINTIALSPNTQYVAYLVFKMADVFGLNRIPVEFTVRVENPHYHNNATIVCLYPNVESRGHKNSEVGLQLVEVLSRARSDGWFEIEIGEFFNLGLEYEEIQMNVNVEIKDGFLNTRLLVDGIEVRPK