AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67762


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67762.t1 MTR_3g006850 91.531 307 24 2 1 306 13 318 0.0 558
MS.gene67762.t1 MTR_1g100597 64.145 304 79 6 3 306 2 275 3.94e-126 361
MS.gene67762.t1 MTR_1g079370 59.667 300 82 7 5 303 4 265 2.00e-112 326
MS.gene67762.t1 MTR_1g079180 60.667 300 79 6 5 303 4 265 2.00e-112 326
MS.gene67762.t1 MTR_1g079230 59.406 303 92 5 5 306 4 276 7.55e-112 325
MS.gene67762.t1 MTR_1g079260 57.756 303 94 7 3 303 2 272 5.29e-108 315
MS.gene67762.t1 MTR_1g079460 57.756 303 90 5 5 306 4 269 1.62e-106 311
MS.gene67762.t1 MTR_1g079850 58.306 307 101 6 3 306 2 284 2.26e-106 311
MS.gene67762.t1 MTR_1g079200 59.272 302 79 7 5 303 4 264 3.17e-104 305
MS.gene67762.t1 MTR_3g452600 55.592 304 90 6 5 306 10 270 1.71e-102 301
MS.gene67762.t1 MTR_1g100613 61.597 263 74 6 21 282 5 241 5.91e-98 288
MS.gene67762.t1 MTR_1g079380 57.667 300 88 7 5 303 4 265 1.65e-95 284
MS.gene67762.t1 MTR_1g026510 53.896 308 115 6 3 306 2 286 1.91e-95 284
MS.gene67762.t1 MTR_1g079250 54.870 308 107 6 3 306 2 281 1.98e-94 281
MS.gene67762.t1 MTR_3g450990 50.625 320 97 8 5 306 10 286 4.84e-88 265
MS.gene67762.t1 MTR_2g079100 52.318 302 91 10 4 300 8 261 1.20e-85 258
MS.gene67762.t1 MTR_1g079350 48.232 311 114 8 3 303 2 275 1.89e-80 245
MS.gene67762.t1 MTR_1g079410 45.631 309 121 8 2 303 5 273 8.84e-75 231
MS.gene67762.t1 MTR_1g079340 46.154 312 130 7 3 303 41 325 6.95e-73 228
MS.gene67762.t1 MTR_7g096300 50.168 297 97 9 3 293 2 253 1.05e-71 235
MS.gene67762.t1 MTR_1g079140 43.631 314 148 12 5 306 13 309 1.36e-64 206
MS.gene67762.t1 MTR_1g079400 40.065 307 143 8 2 303 9 279 1.28e-58 189
MS.gene67762.t1 MTR_1g076870 65.333 150 32 5 143 285 2 138 1.18e-57 182
MS.gene67762.t1 MTR_1g078470 48.571 210 69 4 94 303 14 184 1.25e-51 168
MS.gene67762.t1 MTR_7g112550 39.735 302 148 8 8 303 10 283 6.61e-51 170
MS.gene67762.t1 MTR_1g079350 56.494 154 50 3 3 152 2 142 1.55e-45 154
MS.gene67762.t1 MTR_1g083580 34.754 305 162 8 5 303 8 281 2.37e-43 150
MS.gene67762.t1 MTR_7g112560 34.114 299 151 9 8 304 4 258 3.55e-42 146
MS.gene67762.t1 MTR_1g079240 42.152 223 81 5 84 303 2 179 1.08e-40 140
MS.gene67762.t1 MTR_4g023570 32.886 298 134 9 8 303 4 237 6.75e-36 129
MS.gene67762.t1 MTR_2g042540 64.762 105 34 2 4 107 3 105 1.31e-35 125
MS.gene67762.t1 MTR_7g096310 53.147 143 48 3 61 201 38 163 1.58e-35 126
MS.gene67762.t1 MTR_3g058640 50.400 125 37 1 143 267 7 106 4.20e-32 115
MS.gene67762.t1 MTR_1g078460 67.045 88 26 1 4 91 66 150 1.26e-31 115
MS.gene67762.t1 MTR_1g079210 48.507 134 57 3 144 276 7 129 6.04e-29 108
MS.gene67762.t1 MTR_1g079130 37.931 203 108 7 105 303 1 189 4.63e-27 105
MS.gene67762.t1 MTR_0113s0040 27.103 214 127 6 2 201 19 217 2.98e-16 77.8
MS.gene67762.t1 MTR_7g103380 22.973 222 146 5 1 210 15 223 1.60e-14 72.8
MS.gene67762.t1 MTR_1g079220 44.318 88 24 2 180 267 1 63 4.40e-14 66.6
MS.gene67762.t1 MTR_0002s0020 24.561 228 140 6 1 210 18 231 3.37e-13 68.9
MS.gene67762.t1 MTR_1g101390 30.189 159 94 5 3 159 26 169 7.08e-13 68.2
MS.gene67762.t1 MTR_4g102770 29.936 157 94 4 7 161 21 163 8.84e-13 67.8
MS.gene67762.t1 MTR_1g079390 62.000 50 17 2 249 298 8 55 1.21e-11 59.3
MS.gene67762.t1 MTR_1g050352 54.930 71 26 2 27 95 46 112 1.23e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67762.t1 AT2G02360 36.184 304 143 8 3 302 12 268 2.55e-50 168
MS.gene67762.t1 AT1G80110 37.864 309 125 11 6 302 2 255 1.86e-48 162
MS.gene67762.t1 AT1G56250 38.487 304 155 10 8 304 4 282 9.45e-46 156
MS.gene67762.t1 AT2G02230 32.923 325 175 10 5 306 32 336 2.02e-45 157
MS.gene67762.t1 AT2G02240 34.437 302 152 8 3 302 59 316 9.34e-43 149
MS.gene67762.t1 AT2G02340 33.657 309 155 10 3 302 34 301 2.09e-42 148
MS.gene67762.t1 AT1G09155 36.893 309 151 11 8 303 3 280 2.90e-42 147
MS.gene67762.t1 AT2G02350 33.224 304 156 9 3 302 22 282 4.71e-42 147
MS.gene67762.t1 AT1G56240 36.755 302 159 10 8 302 4 280 7.63e-42 146
MS.gene67762.t1 AT2G02250 31.667 300 160 9 5 302 47 303 4.08e-39 140
MS.gene67762.t1 AT2G02310 31.475 305 162 10 3 303 43 304 4.49e-38 137
MS.gene67762.t1 AT2G02320 31.579 304 159 10 4 302 39 298 1.96e-34 127
MS.gene67762.t1 AT5G24560 36.816 201 98 7 5 201 3 178 4.18e-31 115
MS.gene67762.t1 AT2G02300 30.323 310 147 10 3 303 32 281 1.00e-28 112
MS.gene67762.t1 AT2G02350 29.651 172 90 5 135 302 21 165 2.31e-15 73.2
MS.gene67762.t1 AT3G53000 25.328 229 144 7 1 217 17 230 2.15e-14 72.8
MS.gene67762.t1 AT3G61060 27.742 155 95 5 7 159 27 166 7.13e-14 71.2
MS.gene67762.t1 AT1G63090 26.222 225 132 9 1 209 22 228 3.81e-13 68.9
MS.gene67762.t1 AT3G61060 25.806 155 99 4 7 159 27 167 5.47e-13 68.6
MS.gene67762.t1 AT1G12710 23.661 224 139 7 1 209 24 230 4.17e-12 65.9
MS.gene67762.t1 AT5G52120 24.017 229 141 7 4 213 20 234 1.26e-11 64.7

Find 82 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.3:+3029628 MS.gene67762:intron
CTGCTGATTCCGACGCTGTT+TGG 0.274846 3.3:+3029340 MS.gene67762:CDS
AGCCGCATACCGAGTATTTC+GGG 0.278643 3.3:-3030973 None:intergenic
TAGGCCTAAGGTGGAAAATT+AGG 0.297645 3.3:+3031373 MS.gene67762:CDS
AATGAGTGTTGTCGAGAAAT+TGG 0.309455 3.3:+3031304 MS.gene67762:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.3:+3029425 MS.gene67762:CDS
TTGGAACCACTTTCTCCCTT+TGG 0.330062 3.3:+3029359 MS.gene67762:CDS
AGGCCATACCCGAGTGTAAT+AGG 0.331870 3.3:+3031194 MS.gene67762:CDS
CACCCATCGCTTCTCATACT+AGG 0.340594 3.3:-3031227 None:intergenic
ATTTCTCGACAACACTCATT+TGG 0.340801 3.3:-3031301 None:intergenic
AAGCCGCATACCGAGTATTT+CGG 0.344265 3.3:-3030974 None:intergenic
TCTTTGTTGCGTGACGCGTT+TGG 0.353770 3.3:-3031104 None:intergenic
GCAAACAGTACGACGTTTGT+AGG 0.364009 3.3:-3031150 None:intergenic
CGACCATGATCGATGATGAT+TGG 0.368659 3.3:-3029474 None:intergenic
ATGCAAAGCTTAGCGACTTC+AGG 0.370688 3.3:-3030903 None:intergenic
AAGGGAAATTTCTTTCTTGA+AGG 0.378106 3.3:+3031341 MS.gene67762:CDS
TTCAAGATGATTGATGACTA+TGG 0.395723 3.3:+3031005 MS.gene67762:CDS
TAGCACTAAATCCGTCTGTT+TGG 0.402920 3.3:+3031079 MS.gene67762:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.3:+3031354 MS.gene67762:CDS
GTGTTCTCGCTTAAAATTCG+TGG 0.423796 3.3:+3030927 MS.gene67762:CDS
GACCATGATCGATGATGATT+GGG 0.433866 3.3:-3029473 None:intergenic
GGATTCATATGAATGATTCC+AGG 0.439610 3.3:+3029768 MS.gene67762:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.3:-3029252 None:intergenic
GAGAGTCTGCAAACATCAAC+GGG 0.459322 3.3:-3029291 None:intergenic
GCAAATGTCCCGGTCCTAGA+TGG 0.460524 3.3:+3031171 MS.gene67762:CDS
TTTAAATTGGATAGGAAAAG+TGG 0.463958 3.3:+3029641 MS.gene67762:CDS
CACCTTCTACATCAATTGAT+AGG 0.470721 3.3:-3031049 None:intergenic
CTCGGGTATGGCCTCCATCT+AGG 0.471641 3.3:-3031185 None:intergenic
TATCAGAGAGAGCGAGATAG+AGG 0.472204 3.3:-3029449 None:intergenic
CGCCCTAGTATGAGAAGCGA+TGG 0.476146 3.3:+3031224 MS.gene67762:CDS
ATTGGAGAGTGGCAATAAGA+AGG 0.476949 3.3:+3031322 MS.gene67762:CDS
GACCTATCAATTGATGTAGA+AGG 0.477578 3.3:+3031047 MS.gene67762:CDS
CGCTGCAATCCTATTACACT+CGG 0.477809 3.3:-3031203 None:intergenic
TTGGAGAGTGGCAATAAGAA+GGG 0.493842 3.3:+3031323 MS.gene67762:CDS
GATGATTGAGTTAATGAGAC+GGG 0.495408 3.3:-3029385 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.500991 3.3:+3029695 MS.gene67762:CDS
GCCACCATCACCGCAATGAA+TGG 0.504191 3.3:-3029699 None:intergenic
ACCCATCGCTTCTCATACTA+GGG 0.511060 3.3:-3031226 None:intergenic
ATTATGACATTGATAAAGAG+TGG 0.514642 3.3:+3029747 MS.gene67762:CDS
GTATGGCCTCCATCTAGGAC+CGG 0.515958 3.3:-3031180 None:intergenic
ACATCAATTGATAGGTCCAT+AGG 0.521400 3.3:-3031041 None:intergenic
AGCCCAATCATCATCGATCA+TGG 0.522783 3.3:+3029471 MS.gene67762:CDS
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.3:-3029417 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.532103 3.3:+3031244 MS.gene67762:CDS
GAGTTCAATTCAAGACTTGA+AGG 0.533035 3.3:+3031269 MS.gene67762:CDS
TGGATTTGAGAATGAACCTA+TGG 0.540096 3.3:+3031025 MS.gene67762:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 3.3:+3031245 MS.gene67762:CDS
TATGAGAAGCGATGGGTGGT+TGG 0.542058 3.3:+3031232 MS.gene67762:CDS
AATCCTATTACACTCGGGTA+TGG 0.542614 3.3:-3031197 None:intergenic
ACCATTCATTGCGGTGATGG+TGG 0.550353 3.3:+3029698 MS.gene67762:CDS
TTTCCTTGTCCCGAAATACT+CGG 0.552895 3.3:+3030964 MS.gene67762:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.3:+3029633 MS.gene67762:intron
CGTCGGAATCAGCAGCAGAA+AGG 0.559078 3.3:-3029332 None:intergenic
GGGAATCCAAAGGGAGAAAG+TGG 0.566909 3.3:-3029365 None:intergenic
GGGAGTTGTACGAGACAGAA+TGG 0.577806 3.3:-3029271 None:intergenic
GGAGAGTCTGCAAACATCAA+CGG 0.582704 3.3:-3029292 None:intergenic
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.3:-3029313 None:intergenic
AGGAATAGAAGTTAGGCCTA+AGG 0.587169 3.3:+3031361 MS.gene67762:CDS
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.3:-3029314 None:intergenic
AATAGAAGTTAGGCCTAAGG+TGG 0.588231 3.3:+3031364 MS.gene67762:CDS
TAATGAGACGGGAATCCAAA+GGG 0.591503 3.3:-3029374 None:intergenic
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.3:-3029421 None:intergenic
CATCATCGATCATGGTCGAA+AGG 0.598086 3.3:+3029479 MS.gene67762:CDS
ACAAAGAAAGAACGTGCTCG+AGG 0.605725 3.3:+3031120 MS.gene67762:CDS
CGCGTTTGGATCCAAACAGA+CGG 0.612046 3.3:-3031090 None:intergenic
ATCAGAGAGAGCGAGATAGA+GGG 0.619326 3.3:-3029448 None:intergenic
CGTACTGTTTGCAAATGTCC+CGG 0.619734 3.3:+3031161 MS.gene67762:CDS
TATGGCCTCCATCTAGGACC+GGG 0.622013 3.3:-3031179 None:intergenic
AGACGGATTTAGTGCTACAA+TGG 0.632435 3.3:-3031073 None:intergenic
GTCCCGAAATACTCGGTATG+CGG 0.633122 3.3:+3030971 MS.gene67762:CDS
ATACCGAGTATTTCGGGACA+AGG 0.650354 3.3:-3030967 None:intergenic
AATGTCCCGGTCCTAGATGG+AGG 0.653167 3.3:+3031174 MS.gene67762:CDS
CTATCAATTGATGTAGAAGG+TGG 0.658482 3.3:+3031050 MS.gene67762:CDS
AAAGTGGTTCCAAACAGCGT+CGG 0.661385 3.3:-3029349 None:intergenic
TTAATGAGACGGGAATCCAA+AGG 0.670447 3.3:-3029375 None:intergenic
GCCCTAGTATGAGAAGCGAT+GGG 0.672039 3.3:+3031225 MS.gene67762:CDS
AGATGATTGAGTTAATGAGA+CGG 0.677551 3.3:-3029386 None:intergenic
GTTGTCGAGAAATTGGAGAG+TGG 0.680092 3.3:+3031311 MS.gene67762:CDS
CTAGTATGAGAAGCGATGGG+TGG 0.686490 3.3:+3031228 MS.gene67762:CDS
GCTGCAATCCTATTACACTC+GGG 0.696916 3.3:-3031202 None:intergenic
AGATCTCTCACCATTCATTG+CGG 0.710070 3.3:+3029689 MS.gene67762:CDS
AGTGATGATAGTGATGATAG+CGG 0.780024 3.3:+3029722 MS.gene67762:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCAATTGTTA+AGG + chr3.3:3029558-3029577 MS.gene67762:intron 10.0%
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.3:3029789-3029808 None:intergenic 15.0%
!! CAAATATTGATATATTTAGA+GGG - chr3.3:3029963-3029982 None:intergenic 15.0%
!! CAATGAATATTAATGTTATA+TGG + chr3.3:3030458-3030477 MS.gene67762:intron 15.0%
!! CATATAACATTAATATTCAT+TGG - chr3.3:3030460-3030479 None:intergenic 15.0%
!! TCAAATATTGATATATTTAG+AGG - chr3.3:3029964-3029983 None:intergenic 15.0%
!!! AAAACCTAAAAGAATATTTT+TGG - chr3.3:3029997-3030016 None:intergenic 15.0%
!!! AAAACCTAAGAAATATTTTA+GGG + chr3.3:3030110-3030129 MS.gene67762:intron 15.0%
!!! AAAATATTCTTTTAGGTTTT+TGG + chr3.3:3029997-3030016 MS.gene67762:intron 15.0%
!!! ATTTCATGGATAAAATTTTT+TGG - chr3.3:3030028-3030047 None:intergenic 15.0%
!!! ATTTGTGAATCAATTTTTTA+TGG + chr3.3:3030192-3030211 MS.gene67762:intron 15.0%
!!! TTTGTGAATCAATTTTTTAT+GGG + chr3.3:3030193-3030212 MS.gene67762:intron 15.0%
!! AACCTTTATGAATACTAAAT+TGG + chr3.3:3029919-3029938 MS.gene67762:intron 20.0%
!! ACCTTTATGAATACTAAATT+GGG + chr3.3:3029920-3029939 MS.gene67762:intron 20.0%
!! ATAATAGTATCATTAACACA+AGG - chr3.3:3029814-3029833 None:intergenic 20.0%
!! ATCAAATGTTGGTATATTTA+AGG + chr3.3:3030141-3030160 MS.gene67762:intron 20.0%
!! CCTAATATTTAAGAAATTCA+CGG - chr3.3:3029520-3029539 None:intergenic 20.0%
!! CGTGAATTTCTTAAATATTA+GGG + chr3.3:3029518-3029537 MS.gene67762:intron 20.0%
!! CTAGTATATAATATATAGTG+TGG + chr3.3:3030420-3030439 MS.gene67762:intron 20.0%
!! TCAAATGTTGGTATATTTAA+GGG + chr3.3:3030142-3030161 MS.gene67762:intron 20.0%
!!! AAACCTAAGAAATATTTTAG+GGG + chr3.3:3030111-3030130 MS.gene67762:intron 20.0%
!!! AATTGATTCACAAATTTAGT+AGG - chr3.3:3030187-3030206 None:intergenic 20.0%
!!! ATTGATTCACAAATTTAGTA+GGG - chr3.3:3030186-3030205 None:intergenic 20.0%
!!! CAAAACCTAAGAAATATTTT+AGG + chr3.3:3030109-3030128 MS.gene67762:intron 20.0%
! ACCCAATTTAGTATTCATAA+AGG - chr3.3:3029924-3029943 None:intergenic 25.0%
! ATTATGACATTGATAAAGAG+TGG + chr3.3:3029747-3029766 MS.gene67762:CDS 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.3:3030638-3030657 None:intergenic 25.0%
! CAAATGTTGGTATATTTAAG+GGG + chr3.3:3030143-3030162 MS.gene67762:intron 25.0%
! CCGTGAATTTCTTAAATATT+AGG + chr3.3:3029517-3029536 MS.gene67762:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.3:3029620-3029639 None:intergenic 25.0%
! GAATATTTATTTGCATAGTG+TGG + chr3.3:3030500-3030519 MS.gene67762:intron 25.0%
! TAAAAGAGAATTATCAGAGA+GGG - chr3.3:3030687-3030706 None:intergenic 25.0%
! TAGAATTCTATTAGAAGACT+CGG - chr3.3:3030403-3030422 None:intergenic 25.0%
! TATGTTAATGAAGCCATATT+GGG - chr3.3:3029853-3029872 None:intergenic 25.0%
! TGTAGATACGATAATAATGT+AGG - chr3.3:3030792-3030811 None:intergenic 25.0%
! TTAAAAGAGAATTATCAGAG+AGG - chr3.3:3030688-3030707 None:intergenic 25.0%
! TTATGTTAATGAAGCCATAT+TGG - chr3.3:3029854-3029873 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.3:3030637-3030656 None:intergenic 25.0%
! TTGTCTTTGCAATTATTTAC+AGG + chr3.3:3030877-3030896 MS.gene67762:intron 25.0%
! TTTAAATTGGATAGGAAAAG+TGG + chr3.3:3029641-3029660 MS.gene67762:CDS 25.0%
!! CATAGATGAAATTTTCTGAA+GGG + chr3.3:3030084-3030103 MS.gene67762:intron 25.0%
!! TCATAGATGAAATTTTCTGA+AGG + chr3.3:3030083-3030102 MS.gene67762:intron 25.0%
!! TGCTCCAAAAATATTCTTTT+AGG + chr3.3:3029990-3030009 MS.gene67762:intron 25.0%
!! TTTTTCACATATATGTCTGT+TGG + chr3.3:3030228-3030247 MS.gene67762:intron 25.0%
!!! AACCTAAGAAATATTTTAGG+GGG + chr3.3:3030112-3030131 MS.gene67762:intron 25.0%
!!! ATTTTGAGAGAAGCTATATA+TGG - chr3.3:3030307-3030326 None:intergenic 25.0%
!!! GATTTTGAGACATTAATCTA+TGG - chr3.3:3030285-3030304 None:intergenic 25.0%
!!! TCATGGATAAAATTTTTTGG+AGG - chr3.3:3030025-3030044 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.3:3029628-3029647 MS.gene67762:intron 25.0%
AAAAGAGAATTATCAGAGAG+GGG - chr3.3:3030686-3030705 None:intergenic 30.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.3:3029317-3029336 None:intergenic 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.3:3029316-3029335 None:intergenic 30.0%
AAGGGAAATTTCTTTCTTGA+AGG + chr3.3:3031341-3031360 MS.gene67762:CDS 30.0%
AGATGATTGAGTTAATGAGA+CGG - chr3.3:3029389-3029408 None:intergenic 30.0%
ATATGGTTTGAGTGATAACA+TGG + chr3.3:3030338-3030357 MS.gene67762:intron 30.0%
ATTGATATATTTAGAGGGAC+CGG - chr3.3:3029958-3029977 None:intergenic 30.0%
GTATTATACTCCATATGTGA+TGG + chr3.3:3030815-3030834 MS.gene67762:intron 30.0%
TATGGTTTGAGTGATAACAT+GGG + chr3.3:3030339-3030358 MS.gene67762:intron 30.0%
TGAAGCTCAATATTAGTGAT+GGG + chr3.3:3030659-3030678 MS.gene67762:intron 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.3:3031354-3031373 MS.gene67762:CDS 30.0%
! AATTGGGTTAGATATGTAAC+CGG + chr3.3:3029936-3029955 MS.gene67762:intron 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.3:3031005-3031024 MS.gene67762:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.3:3029633-3029652 MS.gene67762:intron 30.0%
!!! CATATTGGGTTTTAAGTGAT+GGG - chr3.3:3029839-3029858 None:intergenic 30.0%
ACATCAATTGATAGGTCCAT+AGG - chr3.3:3031044-3031063 None:intergenic 35.0%
ATTTCTCGACAACACTCATT+TGG - chr3.3:3031304-3031323 None:intergenic 35.0%
CAAAATGAGAAGGCTACATA+TGG + chr3.3:3030321-3030340 MS.gene67762:intron 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.3:3031052-3031071 None:intergenic 35.0%
CCATCACTTAAAACCCAATA+TGG + chr3.3:3029837-3029856 MS.gene67762:intron 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.3:3031050-3031069 MS.gene67762:CDS 35.0%
CTGAAGCTCAATATTAGTGA+TGG + chr3.3:3030658-3030677 MS.gene67762:intron 35.0%
GACCTATCAATTGATGTAGA+AGG + chr3.3:3031047-3031066 MS.gene67762:CDS 35.0%
GAGTTCAATTCAAGACTTGA+AGG + chr3.3:3031269-3031288 MS.gene67762:CDS 35.0%
GATGATTGAGTTAATGAGAC+GGG - chr3.3:3029388-3029407 None:intergenic 35.0%
GGATTCATATGAATGATTCC+AGG + chr3.3:3029768-3029787 MS.gene67762:CDS 35.0%
GTCCCCCTAAAATATTTCTT+AGG - chr3.3:3030117-3030136 None:intergenic 35.0%
GTGATTCATACCATCACATA+TGG - chr3.3:3030828-3030847 None:intergenic 35.0%
TAGCTTCTCTCAAAATGAGA+AGG + chr3.3:3030311-3030330 MS.gene67762:intron 35.0%
TAGGCTCATCAACTAAAGTT+TGG - chr3.3:3030773-3030792 None:intergenic 35.0%
TGGATTTGAGAATGAACCTA+TGG + chr3.3:3031025-3031044 MS.gene67762:CDS 35.0%
! AATGAGTGTTGTCGAGAAAT+TGG + chr3.3:3031304-3031323 MS.gene67762:CDS 35.0%
! AGTGATGATAGTGATGATAG+CGG + chr3.3:3029722-3029741 MS.gene67762:CDS 35.0%
! GAAAGTTAGAAGCATGACAA+TGG - chr3.3:3030568-3030587 None:intergenic 35.0%
! GGCAGAGCTACTAATATTTT+GGG + chr3.3:3030360-3030379 MS.gene67762:intron 35.0%
!! AGAGCTACTAATATTTTGGG+AGG + chr3.3:3030363-3030382 MS.gene67762:intron 35.0%
!! AGCTACTAATATTTTGGGAG+GGG + chr3.3:3030365-3030384 MS.gene67762:intron 35.0%
!! GAGCTACTAATATTTTGGGA+GGG + chr3.3:3030364-3030383 MS.gene67762:intron 35.0%
!!! CCATATTGGGTTTTAAGTGA+TGG - chr3.3:3029840-3029859 None:intergenic 35.0%
AATAGAAGTTAGGCCTAAGG+TGG + chr3.3:3031364-3031383 MS.gene67762:CDS 40.0%
AATCCTATTACACTCGGGTA+TGG - chr3.3:3031200-3031219 None:intergenic 40.0%
ACTGCTCTACATTGAGAACA+GGG - chr3.3:3030055-3030074 None:intergenic 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.3:3029689-3029708 MS.gene67762:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG + chr3.3:3031361-3031380 MS.gene67762:CDS 40.0%
ATTGGAGAGTGGCAATAAGA+AGG + chr3.3:3031322-3031341 MS.gene67762:CDS 40.0%
CACATATATGTCTGTTGGCA+AGG + chr3.3:3030233-3030252 MS.gene67762:intron 40.0%
GACCATGATCGATGATGATT+GGG - chr3.3:3029476-3029495 None:intergenic 40.0%
GAGAACAGGGACTAATTTCA+TGG - chr3.3:3030042-3030061 None:intergenic 40.0%
GGGGGACTAAAATCAAATGT+TGG + chr3.3:3030130-3030149 MS.gene67762:intron 40.0%
GTGTTCTCGCTTAAAATTCG+TGG + chr3.3:3030927-3030946 MS.gene67762:CDS 40.0%
TAATGAGACGGGAATCCAAA+GGG - chr3.3:3029377-3029396 None:intergenic 40.0%
TAGCACTAAATCCGTCTGTT+TGG + chr3.3:3031079-3031098 MS.gene67762:CDS 40.0%
TTAATGAGACGGGAATCCAA+AGG - chr3.3:3029378-3029397 None:intergenic 40.0%
TTCTATTAGAAGACTCGGCA+TGG - chr3.3:3030398-3030417 None:intergenic 40.0%
TTGGAGAGTGGCAATAAGAA+GGG + chr3.3:3031323-3031342 MS.gene67762:CDS 40.0%
TTTCCTTGTCCCGAAATACT+CGG + chr3.3:3030964-3030983 MS.gene67762:CDS 40.0%
! AGACGGATTTAGTGCTACAA+TGG - chr3.3:3031076-3031095 None:intergenic 40.0%
! CTGTTGGCAAGGAAATTTTC+TGG + chr3.3:3030244-3030263 MS.gene67762:intron 40.0%
! GCTTTTGATGAATTTCCGGA+AGG + chr3.3:3029237-3029256 MS.gene67762:CDS 40.0%
! GGCAGCTTTTGATGAATTTC+CGG + chr3.3:3029233-3029252 MS.gene67762:CDS 40.0%
! GGGCAGAGCTACTAATATTT+TGG + chr3.3:3030359-3030378 MS.gene67762:intron 40.0%
AAAGTGGTTCCAAACAGCGT+CGG - chr3.3:3029352-3029371 None:intergenic 45.0%
AAGCCGCATACCGAGTATTT+CGG - chr3.3:3030977-3030996 None:intergenic 45.0%
ACAAAGAAAGAACGTGCTCG+AGG + chr3.3:3031120-3031139 MS.gene67762:CDS 45.0%
ACCCATCGCTTCTCATACTA+GGG - chr3.3:3031229-3031248 None:intergenic 45.0%
AGCCCAATCATCATCGATCA+TGG + chr3.3:3029471-3029490 MS.gene67762:CDS 45.0%
ATACCGAGTATTTCGGGACA+AGG - chr3.3:3030970-3030989 None:intergenic 45.0%
ATCAGAGAGAGCGAGATAGA+GGG - chr3.3:3029451-3029470 None:intergenic 45.0%
ATGCAAAGCTTAGCGACTTC+AGG - chr3.3:3030906-3030925 None:intergenic 45.0%
CACTGCTCTACATTGAGAAC+AGG - chr3.3:3030056-3030075 None:intergenic 45.0%
CATCATCGATCATGGTCGAA+AGG + chr3.3:3029479-3029498 MS.gene67762:CDS 45.0%
CGACCATGATCGATGATGAT+TGG - chr3.3:3029477-3029496 None:intergenic 45.0%
CGCTGCAATCCTATTACACT+CGG - chr3.3:3031206-3031225 None:intergenic 45.0%
CGTACTGTTTGCAAATGTCC+CGG + chr3.3:3031161-3031180 MS.gene67762:CDS 45.0%
GAGAGTCTGCAAACATCAAC+GGG - chr3.3:3029294-3029313 None:intergenic 45.0%
GCAAACAGTACGACGTTTGT+AGG - chr3.3:3031153-3031172 None:intergenic 45.0%
GCTGCAATCCTATTACACTC+GGG - chr3.3:3031205-3031224 None:intergenic 45.0%
GGAGAGTCTGCAAACATCAA+CGG - chr3.3:3029295-3029314 None:intergenic 45.0%
GTTGTCGAGAAATTGGAGAG+TGG + chr3.3:3031311-3031330 MS.gene67762:CDS 45.0%
TATCAGAGAGAGCGAGATAG+AGG - chr3.3:3029452-3029471 None:intergenic 45.0%
TTGGAACCACTTTCTCCCTT+TGG + chr3.3:3029359-3029378 MS.gene67762:CDS 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.3:3029438-3029457 None:intergenic 45.0%
!!! TATTTACTTATAATTTTTTT+TGG - chr3.3:3030593-3030612 None:intergenic 5.0%
AGCCGCATACCGAGTATTTC+GGG - chr3.3:3030976-3030995 None:intergenic 50.0%
AGGCCATACCCGAGTGTAAT+AGG + chr3.3:3031194-3031213 MS.gene67762:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.3:3029255-3029274 None:intergenic 50.0%
CACCCATCGCTTCTCATACT+AGG - chr3.3:3031230-3031249 None:intergenic 50.0%
CGCGTTTGGATCCAAACAGA+CGG - chr3.3:3031093-3031112 None:intergenic 50.0%
CTAGTATGAGAAGCGATGGG+TGG + chr3.3:3031228-3031247 MS.gene67762:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.3:3029695-3029714 MS.gene67762:CDS 50.0%
GCCCTAGTATGAGAAGCGAT+GGG + chr3.3:3031225-3031244 MS.gene67762:CDS 50.0%
GGGAATCCAAAGGGAGAAAG+TGG - chr3.3:3029368-3029387 None:intergenic 50.0%
GGGAGTTGTACGAGACAGAA+TGG - chr3.3:3029274-3029293 None:intergenic 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr3.3:3031245-3031264 MS.gene67762:CDS 50.0%
GTCCCGAAATACTCGGTATG+CGG + chr3.3:3030971-3030990 MS.gene67762:CDS 50.0%
TATGAGAAGCGATGGGTGGT+TGG + chr3.3:3031232-3031251 MS.gene67762:CDS 50.0%
TCTTTGTTGCGTGACGCGTT+TGG - chr3.3:3031107-3031126 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr3.3:3031244-3031263 MS.gene67762:CDS 50.0%
TTAGAAGACTCGGCATGGAC+AGG - chr3.3:3030393-3030412 None:intergenic 50.0%
! ACCATTCATTGCGGTGATGG+TGG + chr3.3:3029698-3029717 MS.gene67762:CDS 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.3:3029442-3029461 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.3:3029439-3029458 None:intergenic 50.0%
AATGTCCCGGTCCTAGATGG+AGG + chr3.3:3031174-3031193 MS.gene67762:CDS 55.0%
CGCCCTAGTATGAGAAGCGA+TGG + chr3.3:3031224-3031243 MS.gene67762:CDS 55.0%
CGTCGGAATCAGCAGCAGAA+AGG - chr3.3:3029335-3029354 None:intergenic 55.0%
GCAAATGTCCCGGTCCTAGA+TGG + chr3.3:3031171-3031190 MS.gene67762:CDS 55.0%
GCCACCATCACCGCAATGAA+TGG - chr3.3:3029702-3029721 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.3:3029425-3029444 MS.gene67762:CDS 55.0%
! GTATGGCCTCCATCTAGGAC+CGG - chr3.3:3031183-3031202 None:intergenic 55.0%
! TATGGCCTCCATCTAGGACC+GGG - chr3.3:3031182-3031201 None:intergenic 55.0%
!! CTGCTGATTCCGACGCTGTT+TGG + chr3.3:3029340-3029359 MS.gene67762:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.3:3029424-3029443 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.3:3029425-3029444 None:intergenic 55.0%
CTCGGGTATGGCCTCCATCT+AGG - chr3.3:3031188-3031207 None:intergenic 60.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.3:3029430-3029449 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.3:3029420-3029439 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 3029228 3031394 3029228 ID=MS.gene67762
chr3.3 mRNA 3029228 3031394 3029228 ID=MS.gene67762.t1;Parent=MS.gene67762
chr3.3 exon 3029228 3029500 3029228 ID=MS.gene67762.t1.exon1;Parent=MS.gene67762.t1
chr3.3 CDS 3029228 3029500 3029228 ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1
chr3.3 exon 3029638 3029789 3029638 ID=MS.gene67762.t1.exon2;Parent=MS.gene67762.t1
chr3.3 CDS 3029638 3029789 3029638 ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1
chr3.3 exon 3030899 3031394 3030899 ID=MS.gene67762.t1.exon3;Parent=MS.gene67762.t1
chr3.3 CDS 3030899 3031394 3030899 ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1
Gene Sequence

>MS.gene67762

ATGGAGGCAGCTTTTGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACAACTCCCGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCTGATTCCGACGCTGTTTGGAACCACTTTCTCCCTTTGGATTCCCGTCTCATTAACTCAATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTCTCTGATAGCCCAATCATCATCGATCATGGTCGAAAGGTATTCTTTTTCATAACCGTGAATTTCTTAAATATTAGGGTTTATTTTAGAAAAAATTAATTTTTAATCAATTGTTAAGGCTTATTGATTTAAGATGTTTTCGAAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGTGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGGCAGTGATGATAGTGATGATAGCGGTGATTATGACATTGATAAAGAGTGGATTCATATGAATGATTCCAGGTTAGTTTTTTTTTTTTTTTTCCTTGTGTTAATGATACTATTATTTCCCATCACTTAAAACCCAATATGGCTTCATTAACATAATCAACAGTTCTTGTCAAAAAAAAAAAAACATAATCAACAGTTCTAAACCTTTATGAATACTAAATTGGGTTAGATATGTAACCGGTCCCTCTAAATATATCAATATTTGATTTTAGTGCTCCAAAAATATTCTTTTAGGTTTTTGGTTCCTCCAAAAAATTTTATCCATGAAATTAGTCCCTGTTCTCAATGTAGAGCAGTGACTAATTTCATAGATGAAATTTTCTGAAGGGAACAAAACCTAAGAAATATTTTAGGGGGACTAAAATCAAATGTTGGTATATTTAAGGGGACTATTTACTTATTTAACCCTACTAAATTTGTGAATCAATTTTTTATGGGCTTGAATTATTCTTTTTCACATATATGTCTGTTGGCAAGGAAATTTTCTGGAACTTTTAAATCATGCCATAGATTAATGTCTCAAAATCCATATATAGCTTCTCTCAAAATGAGAAGGCTACATATGGTTTGAGTGATAACATGGGCAGAGCTACTAATATTTTGGGAGGGGCTCCTGTCCATGCCGAGTCTTCTAATAGAATTCTAGTATATAATATATAGTGTGGAGTATTATGATAGTCCAATGAATATTAATGTTATATGGACAATTATGATAGTCTAATGAATATTTATTTGCATAGTGTGGAGTATTAATGATACATATATTGTATTTTTGTTAAAATATTTTCCATTGTCATGCTTCTAACTTTCTTCCAAAAAAAATTATAAGTAAATACTTCTCGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTGAAGCTCAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTTTAATAGATAATAAACAATATAACTTATTAATTGAGAAGTTTCTCAATATGCTTCGTTTACAACTTCCAAACTTTAGTTGATGAGCCTACATTATTATCGTATCTACACTTGTATTATACTCCATATGTGATGGTATGAATCACTTTCATCTTTTTTCAAAATTCTTGTATTCTTGTCTTTGCAATTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGCATTGTGTTCTCGCTTAAAATTCGTGGAGTGATCAACTCTTTTTCCTTGTCCCGAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGGACCTATCAATTGATGTAGAAGGTGGCCATTGTAGCACTAAATCCGTCTGTTTGGATCCAAACGCGTCACGCAACAAAGAAAGAACGTGCTCGAGGAATCACTCCTACAAACGTCGTACTGTTTGCAAATGTCCCGGTCCTAGATGGAGGCCATACCCGAGTGTAATAGGATTGCAGCGCCCTAGTATGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCAATTCAAGACTTGAAGGAGAAAAAGTCCAAATGAGTGTTGTCGAGAAATTGGAGAGTGGCAATAAGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAGGTGGAAAATTAG

Protein sequence

>MS.gene67762.t1

MEAAFDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDAVWNHFLPLDSRLINSIISHSPSLANAPTKKALYLALSDSPIIIDHGRKSFKLDRKSGKICYMLAARSLTIHCGDGGSDDSDDSGDYDIDKEWIHMNDSRFPEVAKLCIVFSLKIRGVINSFSLSRNTRYAAYLVFKMIDDYGFENEPMDLSIDVEGGHCSTKSVCLDPNASRNKERTCSRNHSYKRRTVCKCPGPRWRPYPSVIGLQRPSMRSDGWLEIEMGEFNSRLEGEKVQMSVVEKLESGNKKGNFFLEGIEVRPKVEN