Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67762.t1 | KEH32832.1 | 90.6 | 307 | 27 | 2 | 1 | 306 | 13 | 318 | 5.50E-155 | 557 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67762.t1 | Q9ZVQ6 | 36.4 | 302 | 141 | 8 | 5 | 302 | 14 | 268 | 6.6e-40 | 166.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67762.t1 | A0A072UT85 | 90.6 | 307 | 27 | 2 | 1 | 306 | 13 | 318 | 4.0e-155 | 557.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67762.t1 | MTR_3g006850 | 91.531 | 307 | 24 | 2 | 1 | 306 | 13 | 318 | 0.0 | 558 |
MS.gene67762.t1 | MTR_1g100597 | 64.145 | 304 | 79 | 6 | 3 | 306 | 2 | 275 | 3.94e-126 | 361 |
MS.gene67762.t1 | MTR_1g079370 | 59.667 | 300 | 82 | 7 | 5 | 303 | 4 | 265 | 2.00e-112 | 326 |
MS.gene67762.t1 | MTR_1g079180 | 60.667 | 300 | 79 | 6 | 5 | 303 | 4 | 265 | 2.00e-112 | 326 |
MS.gene67762.t1 | MTR_1g079230 | 59.406 | 303 | 92 | 5 | 5 | 306 | 4 | 276 | 7.55e-112 | 325 |
MS.gene67762.t1 | MTR_1g079260 | 57.756 | 303 | 94 | 7 | 3 | 303 | 2 | 272 | 5.29e-108 | 315 |
MS.gene67762.t1 | MTR_1g079460 | 57.756 | 303 | 90 | 5 | 5 | 306 | 4 | 269 | 1.62e-106 | 311 |
MS.gene67762.t1 | MTR_1g079850 | 58.306 | 307 | 101 | 6 | 3 | 306 | 2 | 284 | 2.26e-106 | 311 |
MS.gene67762.t1 | MTR_1g079200 | 59.272 | 302 | 79 | 7 | 5 | 303 | 4 | 264 | 3.17e-104 | 305 |
MS.gene67762.t1 | MTR_3g452600 | 55.592 | 304 | 90 | 6 | 5 | 306 | 10 | 270 | 1.71e-102 | 301 |
MS.gene67762.t1 | MTR_1g100613 | 61.597 | 263 | 74 | 6 | 21 | 282 | 5 | 241 | 5.91e-98 | 288 |
MS.gene67762.t1 | MTR_1g079380 | 57.667 | 300 | 88 | 7 | 5 | 303 | 4 | 265 | 1.65e-95 | 284 |
MS.gene67762.t1 | MTR_1g026510 | 53.896 | 308 | 115 | 6 | 3 | 306 | 2 | 286 | 1.91e-95 | 284 |
MS.gene67762.t1 | MTR_1g079250 | 54.870 | 308 | 107 | 6 | 3 | 306 | 2 | 281 | 1.98e-94 | 281 |
MS.gene67762.t1 | MTR_3g450990 | 50.625 | 320 | 97 | 8 | 5 | 306 | 10 | 286 | 4.84e-88 | 265 |
MS.gene67762.t1 | MTR_2g079100 | 52.318 | 302 | 91 | 10 | 4 | 300 | 8 | 261 | 1.20e-85 | 258 |
MS.gene67762.t1 | MTR_1g079350 | 48.232 | 311 | 114 | 8 | 3 | 303 | 2 | 275 | 1.89e-80 | 245 |
MS.gene67762.t1 | MTR_1g079410 | 45.631 | 309 | 121 | 8 | 2 | 303 | 5 | 273 | 8.84e-75 | 231 |
MS.gene67762.t1 | MTR_1g079340 | 46.154 | 312 | 130 | 7 | 3 | 303 | 41 | 325 | 6.95e-73 | 228 |
MS.gene67762.t1 | MTR_7g096300 | 50.168 | 297 | 97 | 9 | 3 | 293 | 2 | 253 | 1.05e-71 | 235 |
MS.gene67762.t1 | MTR_1g079140 | 43.631 | 314 | 148 | 12 | 5 | 306 | 13 | 309 | 1.36e-64 | 206 |
MS.gene67762.t1 | MTR_1g079400 | 40.065 | 307 | 143 | 8 | 2 | 303 | 9 | 279 | 1.28e-58 | 189 |
MS.gene67762.t1 | MTR_1g076870 | 65.333 | 150 | 32 | 5 | 143 | 285 | 2 | 138 | 1.18e-57 | 182 |
MS.gene67762.t1 | MTR_1g078470 | 48.571 | 210 | 69 | 4 | 94 | 303 | 14 | 184 | 1.25e-51 | 168 |
MS.gene67762.t1 | MTR_7g112550 | 39.735 | 302 | 148 | 8 | 8 | 303 | 10 | 283 | 6.61e-51 | 170 |
MS.gene67762.t1 | MTR_1g079350 | 56.494 | 154 | 50 | 3 | 3 | 152 | 2 | 142 | 1.55e-45 | 154 |
MS.gene67762.t1 | MTR_1g083580 | 34.754 | 305 | 162 | 8 | 5 | 303 | 8 | 281 | 2.37e-43 | 150 |
MS.gene67762.t1 | MTR_7g112560 | 34.114 | 299 | 151 | 9 | 8 | 304 | 4 | 258 | 3.55e-42 | 146 |
MS.gene67762.t1 | MTR_1g079240 | 42.152 | 223 | 81 | 5 | 84 | 303 | 2 | 179 | 1.08e-40 | 140 |
MS.gene67762.t1 | MTR_4g023570 | 32.886 | 298 | 134 | 9 | 8 | 303 | 4 | 237 | 6.75e-36 | 129 |
MS.gene67762.t1 | MTR_2g042540 | 64.762 | 105 | 34 | 2 | 4 | 107 | 3 | 105 | 1.31e-35 | 125 |
MS.gene67762.t1 | MTR_7g096310 | 53.147 | 143 | 48 | 3 | 61 | 201 | 38 | 163 | 1.58e-35 | 126 |
MS.gene67762.t1 | MTR_3g058640 | 50.400 | 125 | 37 | 1 | 143 | 267 | 7 | 106 | 4.20e-32 | 115 |
MS.gene67762.t1 | MTR_1g078460 | 67.045 | 88 | 26 | 1 | 4 | 91 | 66 | 150 | 1.26e-31 | 115 |
MS.gene67762.t1 | MTR_1g079210 | 48.507 | 134 | 57 | 3 | 144 | 276 | 7 | 129 | 6.04e-29 | 108 |
MS.gene67762.t1 | MTR_1g079130 | 37.931 | 203 | 108 | 7 | 105 | 303 | 1 | 189 | 4.63e-27 | 105 |
MS.gene67762.t1 | MTR_0113s0040 | 27.103 | 214 | 127 | 6 | 2 | 201 | 19 | 217 | 2.98e-16 | 77.8 |
MS.gene67762.t1 | MTR_7g103380 | 22.973 | 222 | 146 | 5 | 1 | 210 | 15 | 223 | 1.60e-14 | 72.8 |
MS.gene67762.t1 | MTR_1g079220 | 44.318 | 88 | 24 | 2 | 180 | 267 | 1 | 63 | 4.40e-14 | 66.6 |
MS.gene67762.t1 | MTR_0002s0020 | 24.561 | 228 | 140 | 6 | 1 | 210 | 18 | 231 | 3.37e-13 | 68.9 |
MS.gene67762.t1 | MTR_1g101390 | 30.189 | 159 | 94 | 5 | 3 | 159 | 26 | 169 | 7.08e-13 | 68.2 |
MS.gene67762.t1 | MTR_4g102770 | 29.936 | 157 | 94 | 4 | 7 | 161 | 21 | 163 | 8.84e-13 | 67.8 |
MS.gene67762.t1 | MTR_1g079390 | 62.000 | 50 | 17 | 2 | 249 | 298 | 8 | 55 | 1.21e-11 | 59.3 |
MS.gene67762.t1 | MTR_1g050352 | 54.930 | 71 | 26 | 2 | 27 | 95 | 46 | 112 | 1.23e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67762.t1 | AT2G02360 | 36.184 | 304 | 143 | 8 | 3 | 302 | 12 | 268 | 2.55e-50 | 168 |
MS.gene67762.t1 | AT1G80110 | 37.864 | 309 | 125 | 11 | 6 | 302 | 2 | 255 | 1.86e-48 | 162 |
MS.gene67762.t1 | AT1G56250 | 38.487 | 304 | 155 | 10 | 8 | 304 | 4 | 282 | 9.45e-46 | 156 |
MS.gene67762.t1 | AT2G02230 | 32.923 | 325 | 175 | 10 | 5 | 306 | 32 | 336 | 2.02e-45 | 157 |
MS.gene67762.t1 | AT2G02240 | 34.437 | 302 | 152 | 8 | 3 | 302 | 59 | 316 | 9.34e-43 | 149 |
MS.gene67762.t1 | AT2G02340 | 33.657 | 309 | 155 | 10 | 3 | 302 | 34 | 301 | 2.09e-42 | 148 |
MS.gene67762.t1 | AT1G09155 | 36.893 | 309 | 151 | 11 | 8 | 303 | 3 | 280 | 2.90e-42 | 147 |
MS.gene67762.t1 | AT2G02350 | 33.224 | 304 | 156 | 9 | 3 | 302 | 22 | 282 | 4.71e-42 | 147 |
MS.gene67762.t1 | AT1G56240 | 36.755 | 302 | 159 | 10 | 8 | 302 | 4 | 280 | 7.63e-42 | 146 |
MS.gene67762.t1 | AT2G02250 | 31.667 | 300 | 160 | 9 | 5 | 302 | 47 | 303 | 4.08e-39 | 140 |
MS.gene67762.t1 | AT2G02310 | 31.475 | 305 | 162 | 10 | 3 | 303 | 43 | 304 | 4.49e-38 | 137 |
MS.gene67762.t1 | AT2G02320 | 31.579 | 304 | 159 | 10 | 4 | 302 | 39 | 298 | 1.96e-34 | 127 |
MS.gene67762.t1 | AT5G24560 | 36.816 | 201 | 98 | 7 | 5 | 201 | 3 | 178 | 4.18e-31 | 115 |
MS.gene67762.t1 | AT2G02300 | 30.323 | 310 | 147 | 10 | 3 | 303 | 32 | 281 | 1.00e-28 | 112 |
MS.gene67762.t1 | AT2G02350 | 29.651 | 172 | 90 | 5 | 135 | 302 | 21 | 165 | 2.31e-15 | 73.2 |
MS.gene67762.t1 | AT3G53000 | 25.328 | 229 | 144 | 7 | 1 | 217 | 17 | 230 | 2.15e-14 | 72.8 |
MS.gene67762.t1 | AT3G61060 | 27.742 | 155 | 95 | 5 | 7 | 159 | 27 | 166 | 7.13e-14 | 71.2 |
MS.gene67762.t1 | AT1G63090 | 26.222 | 225 | 132 | 9 | 1 | 209 | 22 | 228 | 3.81e-13 | 68.9 |
MS.gene67762.t1 | AT3G61060 | 25.806 | 155 | 99 | 4 | 7 | 159 | 27 | 167 | 5.47e-13 | 68.6 |
MS.gene67762.t1 | AT1G12710 | 23.661 | 224 | 139 | 7 | 1 | 209 | 24 | 230 | 4.17e-12 | 65.9 |
MS.gene67762.t1 | AT5G52120 | 24.017 | 229 | 141 | 7 | 4 | 213 | 20 | 234 | 1.26e-11 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAATTCAGAGCTTTAAAT+TGG | 0.211874 | 3.3:+3029628 | MS.gene67762:intron |
CTGCTGATTCCGACGCTGTT+TGG | 0.274846 | 3.3:+3029340 | MS.gene67762:CDS |
AGCCGCATACCGAGTATTTC+GGG | 0.278643 | 3.3:-3030973 | None:intergenic |
TAGGCCTAAGGTGGAAAATT+AGG | 0.297645 | 3.3:+3031373 | MS.gene67762:CDS |
AATGAGTGTTGTCGAGAAAT+TGG | 0.309455 | 3.3:+3031304 | MS.gene67762:CDS |
TGCCAACGCTCCCACCAAAA+AGG | 0.326568 | 3.3:+3029425 | MS.gene67762:CDS |
TTGGAACCACTTTCTCCCTT+TGG | 0.330062 | 3.3:+3029359 | MS.gene67762:CDS |
AGGCCATACCCGAGTGTAAT+AGG | 0.331870 | 3.3:+3031194 | MS.gene67762:CDS |
CACCCATCGCTTCTCATACT+AGG | 0.340594 | 3.3:-3031227 | None:intergenic |
ATTTCTCGACAACACTCATT+TGG | 0.340801 | 3.3:-3031301 | None:intergenic |
AAGCCGCATACCGAGTATTT+CGG | 0.344265 | 3.3:-3030974 | None:intergenic |
TCTTTGTTGCGTGACGCGTT+TGG | 0.353770 | 3.3:-3031104 | None:intergenic |
GCAAACAGTACGACGTTTGT+AGG | 0.364009 | 3.3:-3031150 | None:intergenic |
CGACCATGATCGATGATGAT+TGG | 0.368659 | 3.3:-3029474 | None:intergenic |
ATGCAAAGCTTAGCGACTTC+AGG | 0.370688 | 3.3:-3030903 | None:intergenic |
AAGGGAAATTTCTTTCTTGA+AGG | 0.378106 | 3.3:+3031341 | MS.gene67762:CDS |
TTCAAGATGATTGATGACTA+TGG | 0.395723 | 3.3:+3031005 | MS.gene67762:CDS |
TAGCACTAAATCCGTCTGTT+TGG | 0.402920 | 3.3:+3031079 | MS.gene67762:CDS |
TTCTTGAAGGAATAGAAGTT+AGG | 0.408541 | 3.3:+3031354 | MS.gene67762:CDS |
GTGTTCTCGCTTAAAATTCG+TGG | 0.423796 | 3.3:+3030927 | MS.gene67762:CDS |
GACCATGATCGATGATGATT+GGG | 0.433866 | 3.3:-3029473 | None:intergenic |
GGATTCATATGAATGATTCC+AGG | 0.439610 | 3.3:+3029768 | MS.gene67762:CDS |
ATGGCTGAGATGCATCCTTC+CGG | 0.445419 | 3.3:-3029252 | None:intergenic |
GAGAGTCTGCAAACATCAAC+GGG | 0.459322 | 3.3:-3029291 | None:intergenic |
GCAAATGTCCCGGTCCTAGA+TGG | 0.460524 | 3.3:+3031171 | MS.gene67762:CDS |
TTTAAATTGGATAGGAAAAG+TGG | 0.463958 | 3.3:+3029641 | MS.gene67762:CDS |
CACCTTCTACATCAATTGAT+AGG | 0.470721 | 3.3:-3031049 | None:intergenic |
CTCGGGTATGGCCTCCATCT+AGG | 0.471641 | 3.3:-3031185 | None:intergenic |
TATCAGAGAGAGCGAGATAG+AGG | 0.472204 | 3.3:-3029449 | None:intergenic |
CGCCCTAGTATGAGAAGCGA+TGG | 0.476146 | 3.3:+3031224 | MS.gene67762:CDS |
ATTGGAGAGTGGCAATAAGA+AGG | 0.476949 | 3.3:+3031322 | MS.gene67762:CDS |
GACCTATCAATTGATGTAGA+AGG | 0.477578 | 3.3:+3031047 | MS.gene67762:CDS |
CGCTGCAATCCTATTACACT+CGG | 0.477809 | 3.3:-3031203 | None:intergenic |
TTGGAGAGTGGCAATAAGAA+GGG | 0.493842 | 3.3:+3031323 | MS.gene67762:CDS |
GATGATTGAGTTAATGAGAC+GGG | 0.495408 | 3.3:-3029385 | None:intergenic |
CTCACCATTCATTGCGGTGA+TGG | 0.500991 | 3.3:+3029695 | MS.gene67762:CDS |
GCCACCATCACCGCAATGAA+TGG | 0.504191 | 3.3:-3029699 | None:intergenic |
ACCCATCGCTTCTCATACTA+GGG | 0.511060 | 3.3:-3031226 | None:intergenic |
ATTATGACATTGATAAAGAG+TGG | 0.514642 | 3.3:+3029747 | MS.gene67762:CDS |
GTATGGCCTCCATCTAGGAC+CGG | 0.515958 | 3.3:-3031180 | None:intergenic |
ACATCAATTGATAGGTCCAT+AGG | 0.521400 | 3.3:-3031041 | None:intergenic |
AGCCCAATCATCATCGATCA+TGG | 0.522783 | 3.3:+3029471 | MS.gene67762:CDS |
GTGGGAGCGTTGGCAAGGGA+AGG | 0.528441 | 3.3:-3029417 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.532103 | 3.3:+3031244 | MS.gene67762:CDS |
GAGTTCAATTCAAGACTTGA+AGG | 0.533035 | 3.3:+3031269 | MS.gene67762:CDS |
TGGATTTGAGAATGAACCTA+TGG | 0.540096 | 3.3:+3031025 | MS.gene67762:CDS |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 3.3:+3031245 | MS.gene67762:CDS |
TATGAGAAGCGATGGGTGGT+TGG | 0.542058 | 3.3:+3031232 | MS.gene67762:CDS |
AATCCTATTACACTCGGGTA+TGG | 0.542614 | 3.3:-3031197 | None:intergenic |
ACCATTCATTGCGGTGATGG+TGG | 0.550353 | 3.3:+3029698 | MS.gene67762:CDS |
TTTCCTTGTCCCGAAATACT+CGG | 0.552895 | 3.3:+3030964 | MS.gene67762:CDS |
TTCAGAGCTTTAAATTGGAT+AGG | 0.554237 | 3.3:+3029633 | MS.gene67762:intron |
CGTCGGAATCAGCAGCAGAA+AGG | 0.559078 | 3.3:-3029332 | None:intergenic |
GGGAATCCAAAGGGAGAAAG+TGG | 0.566909 | 3.3:-3029365 | None:intergenic |
GGGAGTTGTACGAGACAGAA+TGG | 0.577806 | 3.3:-3029271 | None:intergenic |
GGAGAGTCTGCAAACATCAA+CGG | 0.582704 | 3.3:-3029292 | None:intergenic |
AAGGAAAGTCTTAGAAACAA+GGG | 0.585673 | 3.3:-3029313 | None:intergenic |
AGGAATAGAAGTTAGGCCTA+AGG | 0.587169 | 3.3:+3031361 | MS.gene67762:CDS |
AAAGGAAAGTCTTAGAAACA+AGG | 0.587344 | 3.3:-3029314 | None:intergenic |
AATAGAAGTTAGGCCTAAGG+TGG | 0.588231 | 3.3:+3031364 | MS.gene67762:CDS |
TAATGAGACGGGAATCCAAA+GGG | 0.591503 | 3.3:-3029374 | None:intergenic |
TTTGGTGGGAGCGTTGGCAA+GGG | 0.595797 | 3.3:-3029421 | None:intergenic |
CATCATCGATCATGGTCGAA+AGG | 0.598086 | 3.3:+3029479 | MS.gene67762:CDS |
ACAAAGAAAGAACGTGCTCG+AGG | 0.605725 | 3.3:+3031120 | MS.gene67762:CDS |
CGCGTTTGGATCCAAACAGA+CGG | 0.612046 | 3.3:-3031090 | None:intergenic |
ATCAGAGAGAGCGAGATAGA+GGG | 0.619326 | 3.3:-3029448 | None:intergenic |
CGTACTGTTTGCAAATGTCC+CGG | 0.619734 | 3.3:+3031161 | MS.gene67762:CDS |
TATGGCCTCCATCTAGGACC+GGG | 0.622013 | 3.3:-3031179 | None:intergenic |
AGACGGATTTAGTGCTACAA+TGG | 0.632435 | 3.3:-3031073 | None:intergenic |
GTCCCGAAATACTCGGTATG+CGG | 0.633122 | 3.3:+3030971 | MS.gene67762:CDS |
ATACCGAGTATTTCGGGACA+AGG | 0.650354 | 3.3:-3030967 | None:intergenic |
AATGTCCCGGTCCTAGATGG+AGG | 0.653167 | 3.3:+3031174 | MS.gene67762:CDS |
CTATCAATTGATGTAGAAGG+TGG | 0.658482 | 3.3:+3031050 | MS.gene67762:CDS |
AAAGTGGTTCCAAACAGCGT+CGG | 0.661385 | 3.3:-3029349 | None:intergenic |
TTAATGAGACGGGAATCCAA+AGG | 0.670447 | 3.3:-3029375 | None:intergenic |
GCCCTAGTATGAGAAGCGAT+GGG | 0.672039 | 3.3:+3031225 | MS.gene67762:CDS |
AGATGATTGAGTTAATGAGA+CGG | 0.677551 | 3.3:-3029386 | None:intergenic |
GTTGTCGAGAAATTGGAGAG+TGG | 0.680092 | 3.3:+3031311 | MS.gene67762:CDS |
CTAGTATGAGAAGCGATGGG+TGG | 0.686490 | 3.3:+3031228 | MS.gene67762:CDS |
GCTGCAATCCTATTACACTC+GGG | 0.696916 | 3.3:-3031202 | None:intergenic |
AGATCTCTCACCATTCATTG+CGG | 0.710070 | 3.3:+3029689 | MS.gene67762:CDS |
AGTGATGATAGTGATGATAG+CGG | 0.780024 | 3.3:+3029722 | MS.gene67762:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAATCAATTGTTA+AGG | + | chr3.3:3029558-3029577 | MS.gene67762:intron | 10.0% |
!! | AAAAAAAAAAAAAACTAACC+TGG | - | chr3.3:3029789-3029808 | None:intergenic | 15.0% |
!! | CAAATATTGATATATTTAGA+GGG | - | chr3.3:3029963-3029982 | None:intergenic | 15.0% |
!! | CAATGAATATTAATGTTATA+TGG | + | chr3.3:3030458-3030477 | MS.gene67762:intron | 15.0% |
!! | CATATAACATTAATATTCAT+TGG | - | chr3.3:3030460-3030479 | None:intergenic | 15.0% |
!! | TCAAATATTGATATATTTAG+AGG | - | chr3.3:3029964-3029983 | None:intergenic | 15.0% |
!!! | AAAACCTAAAAGAATATTTT+TGG | - | chr3.3:3029997-3030016 | None:intergenic | 15.0% |
!!! | AAAACCTAAGAAATATTTTA+GGG | + | chr3.3:3030110-3030129 | MS.gene67762:intron | 15.0% |
!!! | AAAATATTCTTTTAGGTTTT+TGG | + | chr3.3:3029997-3030016 | MS.gene67762:intron | 15.0% |
!!! | ATTTCATGGATAAAATTTTT+TGG | - | chr3.3:3030028-3030047 | None:intergenic | 15.0% |
!!! | ATTTGTGAATCAATTTTTTA+TGG | + | chr3.3:3030192-3030211 | MS.gene67762:intron | 15.0% |
!!! | TTTGTGAATCAATTTTTTAT+GGG | + | chr3.3:3030193-3030212 | MS.gene67762:intron | 15.0% |
!! | AACCTTTATGAATACTAAAT+TGG | + | chr3.3:3029919-3029938 | MS.gene67762:intron | 20.0% |
!! | ACCTTTATGAATACTAAATT+GGG | + | chr3.3:3029920-3029939 | MS.gene67762:intron | 20.0% |
!! | ATAATAGTATCATTAACACA+AGG | - | chr3.3:3029814-3029833 | None:intergenic | 20.0% |
!! | ATCAAATGTTGGTATATTTA+AGG | + | chr3.3:3030141-3030160 | MS.gene67762:intron | 20.0% |
!! | CCTAATATTTAAGAAATTCA+CGG | - | chr3.3:3029520-3029539 | None:intergenic | 20.0% |
!! | CGTGAATTTCTTAAATATTA+GGG | + | chr3.3:3029518-3029537 | MS.gene67762:intron | 20.0% |
!! | CTAGTATATAATATATAGTG+TGG | + | chr3.3:3030420-3030439 | MS.gene67762:intron | 20.0% |
!! | TCAAATGTTGGTATATTTAA+GGG | + | chr3.3:3030142-3030161 | MS.gene67762:intron | 20.0% |
!!! | AAACCTAAGAAATATTTTAG+GGG | + | chr3.3:3030111-3030130 | MS.gene67762:intron | 20.0% |
!!! | AATTGATTCACAAATTTAGT+AGG | - | chr3.3:3030187-3030206 | None:intergenic | 20.0% |
!!! | ATTGATTCACAAATTTAGTA+GGG | - | chr3.3:3030186-3030205 | None:intergenic | 20.0% |
!!! | CAAAACCTAAGAAATATTTT+AGG | + | chr3.3:3030109-3030128 | MS.gene67762:intron | 20.0% |
! | ACCCAATTTAGTATTCATAA+AGG | - | chr3.3:3029924-3029943 | None:intergenic | 25.0% |
! | ATTATGACATTGATAAAGAG+TGG | + | chr3.3:3029747-3029766 | MS.gene67762:CDS | 25.0% |
! | ATTCATGTGTAAGTTAACTT+TGG | - | chr3.3:3030638-3030657 | None:intergenic | 25.0% |
! | CAAATGTTGGTATATTTAAG+GGG | + | chr3.3:3030143-3030162 | MS.gene67762:intron | 25.0% |
! | CCGTGAATTTCTTAAATATT+AGG | + | chr3.3:3029517-3029536 | MS.gene67762:intron | 25.0% |
! | CTCTGAATTTCATATATTCA+AGG | - | chr3.3:3029620-3029639 | None:intergenic | 25.0% |
! | GAATATTTATTTGCATAGTG+TGG | + | chr3.3:3030500-3030519 | MS.gene67762:intron | 25.0% |
! | TAAAAGAGAATTATCAGAGA+GGG | - | chr3.3:3030687-3030706 | None:intergenic | 25.0% |
! | TAGAATTCTATTAGAAGACT+CGG | - | chr3.3:3030403-3030422 | None:intergenic | 25.0% |
! | TATGTTAATGAAGCCATATT+GGG | - | chr3.3:3029853-3029872 | None:intergenic | 25.0% |
! | TGTAGATACGATAATAATGT+AGG | - | chr3.3:3030792-3030811 | None:intergenic | 25.0% |
! | TTAAAAGAGAATTATCAGAG+AGG | - | chr3.3:3030688-3030707 | None:intergenic | 25.0% |
! | TTATGTTAATGAAGCCATAT+TGG | - | chr3.3:3029854-3029873 | None:intergenic | 25.0% |
! | TTCATGTGTAAGTTAACTTT+GGG | - | chr3.3:3030637-3030656 | None:intergenic | 25.0% |
! | TTGTCTTTGCAATTATTTAC+AGG | + | chr3.3:3030877-3030896 | MS.gene67762:intron | 25.0% |
! | TTTAAATTGGATAGGAAAAG+TGG | + | chr3.3:3029641-3029660 | MS.gene67762:CDS | 25.0% |
!! | CATAGATGAAATTTTCTGAA+GGG | + | chr3.3:3030084-3030103 | MS.gene67762:intron | 25.0% |
!! | TCATAGATGAAATTTTCTGA+AGG | + | chr3.3:3030083-3030102 | MS.gene67762:intron | 25.0% |
!! | TGCTCCAAAAATATTCTTTT+AGG | + | chr3.3:3029990-3030009 | MS.gene67762:intron | 25.0% |
!! | TTTTTCACATATATGTCTGT+TGG | + | chr3.3:3030228-3030247 | MS.gene67762:intron | 25.0% |
!!! | AACCTAAGAAATATTTTAGG+GGG | + | chr3.3:3030112-3030131 | MS.gene67762:intron | 25.0% |
!!! | ATTTTGAGAGAAGCTATATA+TGG | - | chr3.3:3030307-3030326 | None:intergenic | 25.0% |
!!! | GATTTTGAGACATTAATCTA+TGG | - | chr3.3:3030285-3030304 | None:intergenic | 25.0% |
!!! | TCATGGATAAAATTTTTTGG+AGG | - | chr3.3:3030025-3030044 | None:intergenic | 25.0% |
!!! | TGAAATTCAGAGCTTTAAAT+TGG | + | chr3.3:3029628-3029647 | MS.gene67762:intron | 25.0% |
AAAAGAGAATTATCAGAGAG+GGG | - | chr3.3:3030686-3030705 | None:intergenic | 30.0% | |
AAAGGAAAGTCTTAGAAACA+AGG | - | chr3.3:3029317-3029336 | None:intergenic | 30.0% | |
AAGGAAAGTCTTAGAAACAA+GGG | - | chr3.3:3029316-3029335 | None:intergenic | 30.0% | |
AAGGGAAATTTCTTTCTTGA+AGG | + | chr3.3:3031341-3031360 | MS.gene67762:CDS | 30.0% | |
AGATGATTGAGTTAATGAGA+CGG | - | chr3.3:3029389-3029408 | None:intergenic | 30.0% | |
ATATGGTTTGAGTGATAACA+TGG | + | chr3.3:3030338-3030357 | MS.gene67762:intron | 30.0% | |
ATTGATATATTTAGAGGGAC+CGG | - | chr3.3:3029958-3029977 | None:intergenic | 30.0% | |
GTATTATACTCCATATGTGA+TGG | + | chr3.3:3030815-3030834 | MS.gene67762:intron | 30.0% | |
TATGGTTTGAGTGATAACAT+GGG | + | chr3.3:3030339-3030358 | MS.gene67762:intron | 30.0% | |
TGAAGCTCAATATTAGTGAT+GGG | + | chr3.3:3030659-3030678 | MS.gene67762:intron | 30.0% | |
TTCTTGAAGGAATAGAAGTT+AGG | + | chr3.3:3031354-3031373 | MS.gene67762:CDS | 30.0% | |
! | AATTGGGTTAGATATGTAAC+CGG | + | chr3.3:3029936-3029955 | MS.gene67762:intron | 30.0% |
! | TTCAAGATGATTGATGACTA+TGG | + | chr3.3:3031005-3031024 | MS.gene67762:CDS | 30.0% |
!! | TTCAGAGCTTTAAATTGGAT+AGG | + | chr3.3:3029633-3029652 | MS.gene67762:intron | 30.0% |
!!! | CATATTGGGTTTTAAGTGAT+GGG | - | chr3.3:3029839-3029858 | None:intergenic | 30.0% |
ACATCAATTGATAGGTCCAT+AGG | - | chr3.3:3031044-3031063 | None:intergenic | 35.0% | |
ATTTCTCGACAACACTCATT+TGG | - | chr3.3:3031304-3031323 | None:intergenic | 35.0% | |
CAAAATGAGAAGGCTACATA+TGG | + | chr3.3:3030321-3030340 | MS.gene67762:intron | 35.0% | |
CACCTTCTACATCAATTGAT+AGG | - | chr3.3:3031052-3031071 | None:intergenic | 35.0% | |
CCATCACTTAAAACCCAATA+TGG | + | chr3.3:3029837-3029856 | MS.gene67762:intron | 35.0% | |
CTATCAATTGATGTAGAAGG+TGG | + | chr3.3:3031050-3031069 | MS.gene67762:CDS | 35.0% | |
CTGAAGCTCAATATTAGTGA+TGG | + | chr3.3:3030658-3030677 | MS.gene67762:intron | 35.0% | |
GACCTATCAATTGATGTAGA+AGG | + | chr3.3:3031047-3031066 | MS.gene67762:CDS | 35.0% | |
GAGTTCAATTCAAGACTTGA+AGG | + | chr3.3:3031269-3031288 | MS.gene67762:CDS | 35.0% | |
GATGATTGAGTTAATGAGAC+GGG | - | chr3.3:3029388-3029407 | None:intergenic | 35.0% | |
GGATTCATATGAATGATTCC+AGG | + | chr3.3:3029768-3029787 | MS.gene67762:CDS | 35.0% | |
GTCCCCCTAAAATATTTCTT+AGG | - | chr3.3:3030117-3030136 | None:intergenic | 35.0% | |
GTGATTCATACCATCACATA+TGG | - | chr3.3:3030828-3030847 | None:intergenic | 35.0% | |
TAGCTTCTCTCAAAATGAGA+AGG | + | chr3.3:3030311-3030330 | MS.gene67762:intron | 35.0% | |
TAGGCTCATCAACTAAAGTT+TGG | - | chr3.3:3030773-3030792 | None:intergenic | 35.0% | |
TGGATTTGAGAATGAACCTA+TGG | + | chr3.3:3031025-3031044 | MS.gene67762:CDS | 35.0% | |
! | AATGAGTGTTGTCGAGAAAT+TGG | + | chr3.3:3031304-3031323 | MS.gene67762:CDS | 35.0% |
! | AGTGATGATAGTGATGATAG+CGG | + | chr3.3:3029722-3029741 | MS.gene67762:CDS | 35.0% |
! | GAAAGTTAGAAGCATGACAA+TGG | - | chr3.3:3030568-3030587 | None:intergenic | 35.0% |
! | GGCAGAGCTACTAATATTTT+GGG | + | chr3.3:3030360-3030379 | MS.gene67762:intron | 35.0% |
!! | AGAGCTACTAATATTTTGGG+AGG | + | chr3.3:3030363-3030382 | MS.gene67762:intron | 35.0% |
!! | AGCTACTAATATTTTGGGAG+GGG | + | chr3.3:3030365-3030384 | MS.gene67762:intron | 35.0% |
!! | GAGCTACTAATATTTTGGGA+GGG | + | chr3.3:3030364-3030383 | MS.gene67762:intron | 35.0% |
!!! | CCATATTGGGTTTTAAGTGA+TGG | - | chr3.3:3029840-3029859 | None:intergenic | 35.0% |
AATAGAAGTTAGGCCTAAGG+TGG | + | chr3.3:3031364-3031383 | MS.gene67762:CDS | 40.0% | |
AATCCTATTACACTCGGGTA+TGG | - | chr3.3:3031200-3031219 | None:intergenic | 40.0% | |
ACTGCTCTACATTGAGAACA+GGG | - | chr3.3:3030055-3030074 | None:intergenic | 40.0% | |
AGATCTCTCACCATTCATTG+CGG | + | chr3.3:3029689-3029708 | MS.gene67762:CDS | 40.0% | |
AGGAATAGAAGTTAGGCCTA+AGG | + | chr3.3:3031361-3031380 | MS.gene67762:CDS | 40.0% | |
ATTGGAGAGTGGCAATAAGA+AGG | + | chr3.3:3031322-3031341 | MS.gene67762:CDS | 40.0% | |
CACATATATGTCTGTTGGCA+AGG | + | chr3.3:3030233-3030252 | MS.gene67762:intron | 40.0% | |
GACCATGATCGATGATGATT+GGG | - | chr3.3:3029476-3029495 | None:intergenic | 40.0% | |
GAGAACAGGGACTAATTTCA+TGG | - | chr3.3:3030042-3030061 | None:intergenic | 40.0% | |
GGGGGACTAAAATCAAATGT+TGG | + | chr3.3:3030130-3030149 | MS.gene67762:intron | 40.0% | |
GTGTTCTCGCTTAAAATTCG+TGG | + | chr3.3:3030927-3030946 | MS.gene67762:CDS | 40.0% | |
TAATGAGACGGGAATCCAAA+GGG | - | chr3.3:3029377-3029396 | None:intergenic | 40.0% | |
TAGCACTAAATCCGTCTGTT+TGG | + | chr3.3:3031079-3031098 | MS.gene67762:CDS | 40.0% | |
TTAATGAGACGGGAATCCAA+AGG | - | chr3.3:3029378-3029397 | None:intergenic | 40.0% | |
TTCTATTAGAAGACTCGGCA+TGG | - | chr3.3:3030398-3030417 | None:intergenic | 40.0% | |
TTGGAGAGTGGCAATAAGAA+GGG | + | chr3.3:3031323-3031342 | MS.gene67762:CDS | 40.0% | |
TTTCCTTGTCCCGAAATACT+CGG | + | chr3.3:3030964-3030983 | MS.gene67762:CDS | 40.0% | |
! | AGACGGATTTAGTGCTACAA+TGG | - | chr3.3:3031076-3031095 | None:intergenic | 40.0% |
! | CTGTTGGCAAGGAAATTTTC+TGG | + | chr3.3:3030244-3030263 | MS.gene67762:intron | 40.0% |
! | GCTTTTGATGAATTTCCGGA+AGG | + | chr3.3:3029237-3029256 | MS.gene67762:CDS | 40.0% |
! | GGCAGCTTTTGATGAATTTC+CGG | + | chr3.3:3029233-3029252 | MS.gene67762:CDS | 40.0% |
! | GGGCAGAGCTACTAATATTT+TGG | + | chr3.3:3030359-3030378 | MS.gene67762:intron | 40.0% |
AAAGTGGTTCCAAACAGCGT+CGG | - | chr3.3:3029352-3029371 | None:intergenic | 45.0% | |
AAGCCGCATACCGAGTATTT+CGG | - | chr3.3:3030977-3030996 | None:intergenic | 45.0% | |
ACAAAGAAAGAACGTGCTCG+AGG | + | chr3.3:3031120-3031139 | MS.gene67762:CDS | 45.0% | |
ACCCATCGCTTCTCATACTA+GGG | - | chr3.3:3031229-3031248 | None:intergenic | 45.0% | |
AGCCCAATCATCATCGATCA+TGG | + | chr3.3:3029471-3029490 | MS.gene67762:CDS | 45.0% | |
ATACCGAGTATTTCGGGACA+AGG | - | chr3.3:3030970-3030989 | None:intergenic | 45.0% | |
ATCAGAGAGAGCGAGATAGA+GGG | - | chr3.3:3029451-3029470 | None:intergenic | 45.0% | |
ATGCAAAGCTTAGCGACTTC+AGG | - | chr3.3:3030906-3030925 | None:intergenic | 45.0% | |
CACTGCTCTACATTGAGAAC+AGG | - | chr3.3:3030056-3030075 | None:intergenic | 45.0% | |
CATCATCGATCATGGTCGAA+AGG | + | chr3.3:3029479-3029498 | MS.gene67762:CDS | 45.0% | |
CGACCATGATCGATGATGAT+TGG | - | chr3.3:3029477-3029496 | None:intergenic | 45.0% | |
CGCTGCAATCCTATTACACT+CGG | - | chr3.3:3031206-3031225 | None:intergenic | 45.0% | |
CGTACTGTTTGCAAATGTCC+CGG | + | chr3.3:3031161-3031180 | MS.gene67762:CDS | 45.0% | |
GAGAGTCTGCAAACATCAAC+GGG | - | chr3.3:3029294-3029313 | None:intergenic | 45.0% | |
GCAAACAGTACGACGTTTGT+AGG | - | chr3.3:3031153-3031172 | None:intergenic | 45.0% | |
GCTGCAATCCTATTACACTC+GGG | - | chr3.3:3031205-3031224 | None:intergenic | 45.0% | |
GGAGAGTCTGCAAACATCAA+CGG | - | chr3.3:3029295-3029314 | None:intergenic | 45.0% | |
GTTGTCGAGAAATTGGAGAG+TGG | + | chr3.3:3031311-3031330 | MS.gene67762:CDS | 45.0% | |
TATCAGAGAGAGCGAGATAG+AGG | - | chr3.3:3029452-3029471 | None:intergenic | 45.0% | |
TTGGAACCACTTTCTCCCTT+TGG | + | chr3.3:3029359-3029378 | MS.gene67762:CDS | 45.0% | |
!! | AGATAGAGGGCCTTTTTGGT+GGG | - | chr3.3:3029438-3029457 | None:intergenic | 45.0% |
!!! | TATTTACTTATAATTTTTTT+TGG | - | chr3.3:3030593-3030612 | None:intergenic | 5.0% |
AGCCGCATACCGAGTATTTC+GGG | - | chr3.3:3030976-3030995 | None:intergenic | 50.0% | |
AGGCCATACCCGAGTGTAAT+AGG | + | chr3.3:3031194-3031213 | MS.gene67762:CDS | 50.0% | |
ATGGCTGAGATGCATCCTTC+CGG | - | chr3.3:3029255-3029274 | None:intergenic | 50.0% | |
CACCCATCGCTTCTCATACT+AGG | - | chr3.3:3031230-3031249 | None:intergenic | 50.0% | |
CGCGTTTGGATCCAAACAGA+CGG | - | chr3.3:3031093-3031112 | None:intergenic | 50.0% | |
CTAGTATGAGAAGCGATGGG+TGG | + | chr3.3:3031228-3031247 | MS.gene67762:CDS | 50.0% | |
CTCACCATTCATTGCGGTGA+TGG | + | chr3.3:3029695-3029714 | MS.gene67762:CDS | 50.0% | |
GCCCTAGTATGAGAAGCGAT+GGG | + | chr3.3:3031225-3031244 | MS.gene67762:CDS | 50.0% | |
GGGAATCCAAAGGGAGAAAG+TGG | - | chr3.3:3029368-3029387 | None:intergenic | 50.0% | |
GGGAGTTGTACGAGACAGAA+TGG | - | chr3.3:3029274-3029293 | None:intergenic | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | + | chr3.3:3031245-3031264 | MS.gene67762:CDS | 50.0% | |
GTCCCGAAATACTCGGTATG+CGG | + | chr3.3:3030971-3030990 | MS.gene67762:CDS | 50.0% | |
TATGAGAAGCGATGGGTGGT+TGG | + | chr3.3:3031232-3031251 | MS.gene67762:CDS | 50.0% | |
TCTTTGTTGCGTGACGCGTT+TGG | - | chr3.3:3031107-3031126 | None:intergenic | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | + | chr3.3:3031244-3031263 | MS.gene67762:CDS | 50.0% | |
TTAGAAGACTCGGCATGGAC+AGG | - | chr3.3:3030393-3030412 | None:intergenic | 50.0% | |
! | ACCATTCATTGCGGTGATGG+TGG | + | chr3.3:3029698-3029717 | MS.gene67762:CDS | 50.0% |
! | AGCGAGATAGAGGGCCTTTT+TGG | - | chr3.3:3029442-3029461 | None:intergenic | 50.0% |
! | GAGATAGAGGGCCTTTTTGG+TGG | - | chr3.3:3029439-3029458 | None:intergenic | 50.0% |
AATGTCCCGGTCCTAGATGG+AGG | + | chr3.3:3031174-3031193 | MS.gene67762:CDS | 55.0% | |
CGCCCTAGTATGAGAAGCGA+TGG | + | chr3.3:3031224-3031243 | MS.gene67762:CDS | 55.0% | |
CGTCGGAATCAGCAGCAGAA+AGG | - | chr3.3:3029335-3029354 | None:intergenic | 55.0% | |
GCAAATGTCCCGGTCCTAGA+TGG | + | chr3.3:3031171-3031190 | MS.gene67762:CDS | 55.0% | |
GCCACCATCACCGCAATGAA+TGG | - | chr3.3:3029702-3029721 | None:intergenic | 55.0% | |
TGCCAACGCTCCCACCAAAA+AGG | + | chr3.3:3029425-3029444 | MS.gene67762:CDS | 55.0% | |
! | GTATGGCCTCCATCTAGGAC+CGG | - | chr3.3:3031183-3031202 | None:intergenic | 55.0% |
! | TATGGCCTCCATCTAGGACC+GGG | - | chr3.3:3031182-3031201 | None:intergenic | 55.0% |
!! | CTGCTGATTCCGACGCTGTT+TGG | + | chr3.3:3029340-3029359 | MS.gene67762:CDS | 55.0% |
!! | TTTGGTGGGAGCGTTGGCAA+GGG | - | chr3.3:3029424-3029443 | None:intergenic | 55.0% |
!!! | TTTTGGTGGGAGCGTTGGCA+AGG | - | chr3.3:3029425-3029444 | None:intergenic | 55.0% |
CTCGGGTATGGCCTCCATCT+AGG | - | chr3.3:3031188-3031207 | None:intergenic | 60.0% | |
!! | GGCCTTTTTGGTGGGAGCGT+TGG | - | chr3.3:3029430-3029449 | None:intergenic | 60.0% |
!! | GTGGGAGCGTTGGCAAGGGA+AGG | - | chr3.3:3029420-3029439 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 3029228 | 3031394 | 3029228 | ID=MS.gene67762 |
chr3.3 | mRNA | 3029228 | 3031394 | 3029228 | ID=MS.gene67762.t1;Parent=MS.gene67762 |
chr3.3 | exon | 3029228 | 3029500 | 3029228 | ID=MS.gene67762.t1.exon1;Parent=MS.gene67762.t1 |
chr3.3 | CDS | 3029228 | 3029500 | 3029228 | ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1 |
chr3.3 | exon | 3029638 | 3029789 | 3029638 | ID=MS.gene67762.t1.exon2;Parent=MS.gene67762.t1 |
chr3.3 | CDS | 3029638 | 3029789 | 3029638 | ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1 |
chr3.3 | exon | 3030899 | 3031394 | 3030899 | ID=MS.gene67762.t1.exon3;Parent=MS.gene67762.t1 |
chr3.3 | CDS | 3030899 | 3031394 | 3030899 | ID=cds.MS.gene67762.t1;Parent=MS.gene67762.t1 |
Gene Sequence |
Protein sequence |