AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005023

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005023.t1 MTR_1g079350 96.377 276 9 1 1 276 1 275 0.0 551
MS.gene005023.t1 MTR_1g079180 61.011 277 95 6 1 276 1 265 6.57e-104 303
MS.gene005023.t1 MTR_1g079460 60.145 276 100 5 1 276 1 266 2.18e-101 297
MS.gene005023.t1 MTR_1g079370 58.123 277 103 6 1 276 1 265 4.62e-100 293
MS.gene005023.t1 MTR_1g079340 58.703 293 97 8 1 276 40 325 1.24e-98 292
MS.gene005023.t1 MTR_1g079200 60.072 278 95 7 1 276 1 264 5.82e-98 288
MS.gene005023.t1 MTR_1g079260 54.286 280 116 5 1 276 1 272 6.82e-95 281
MS.gene005023.t1 MTR_1g100597 56.140 285 103 7 1 276 1 272 5.96e-93 276
MS.gene005023.t1 MTR_1g026510 53.819 288 116 8 1 276 1 283 1.62e-89 268
MS.gene005023.t1 MTR_1g079350 95.489 133 6 0 1 133 1 133 3.82e-89 264
MS.gene005023.t1 MTR_1g079380 54.874 277 112 6 1 276 1 265 1.03e-86 261
MS.gene005023.t1 MTR_3g452600 54.480 279 100 9 4 276 10 267 1.30e-85 257
MS.gene005023.t1 MTR_1g079250 54.064 283 118 8 1 276 1 278 7.71e-84 253
MS.gene005023.t1 MTR_3g006850 47.588 311 117 6 2 276 15 315 3.46e-81 247
MS.gene005023.t1 MTR_1g079850 51.536 293 113 9 1 276 1 281 1.20e-80 245
MS.gene005023.t1 MTR_1g079230 48.789 289 119 6 1 276 1 273 1.69e-75 231
MS.gene005023.t1 MTR_1g100613 54.065 246 90 6 20 253 5 239 7.02e-75 229
MS.gene005023.t1 MTR_3g450990 48.123 293 113 10 4 276 10 283 2.42e-73 226
MS.gene005023.t1 MTR_2g079100 49.638 276 112 9 3 273 8 261 9.10e-71 219
MS.gene005023.t1 MTR_7g096300 52.256 266 103 10 1 261 1 247 3.80e-65 217
MS.gene005023.t1 MTR_1g079410 44.086 279 141 5 2 276 6 273 2.60e-62 197
MS.gene005023.t1 MTR_1g079140 39.799 299 149 6 4 276 13 306 9.27e-59 189
MS.gene005023.t1 MTR_7g112550 41.197 284 143 12 7 276 10 283 2.23e-49 165
MS.gene005023.t1 MTR_1g079400 37.329 292 144 8 2 276 10 279 1.94e-48 162
MS.gene005023.t1 MTR_1g083580 37.102 283 157 8 5 276 9 281 2.42e-48 162
MS.gene005023.t1 MTR_7g112560 37.184 277 150 8 4 276 1 257 8.90e-48 160
MS.gene005023.t1 MTR_4g023570 35.145 276 137 8 4 276 1 237 6.19e-42 144
MS.gene005023.t1 MTR_1g078470 45.918 196 93 6 81 276 2 184 2.98e-41 140
MS.gene005023.t1 MTR_1g079240 47.895 190 74 8 90 276 12 179 8.77e-41 139
MS.gene005023.t1 MTR_2g042540 60.748 107 39 2 1 106 1 105 2.23e-33 119
MS.gene005023.t1 MTR_1g076870 47.826 138 49 3 133 253 2 133 1.85e-30 111
MS.gene005023.t1 MTR_1g078460 60.000 90 33 1 1 90 64 150 2.09e-25 99.0
MS.gene005023.t1 MTR_1g079130 37.056 197 92 8 104 276 1 189 7.92e-24 95.9
MS.gene005023.t1 MTR_7g096310 48.800 125 50 4 58 172 24 144 9.62e-24 94.7
MS.gene005023.t1 MTR_1g079210 44.000 125 59 2 134 249 7 129 3.35e-23 92.4
MS.gene005023.t1 MTR_3g058640 47.788 113 51 4 128 239 1 106 5.72e-21 85.9
MS.gene005023.t1 MTR_7g103380 24.314 255 162 6 3 245 18 253 1.76e-13 69.3
MS.gene005023.t1 MTR_0113s0040 25.500 200 133 4 2 189 20 215 1.02e-12 67.0
MS.gene005023.t1 MTR_1g101390 30.667 150 96 4 2 149 26 169 3.52e-12 65.9
MS.gene005023.t1 MTR_5g010800 28.155 206 118 9 6 192 19 213 4.36e-12 65.5
MS.gene005023.t1 MTR_4g102770 25.628 199 133 3 6 192 21 216 5.06e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005023.t1 AT1G80110 38.662 269 148 4 7 275 4 255 9.71e-51 167
MS.gene005023.t1 AT2G02360 37.276 279 148 9 2 275 12 268 2.32e-49 164
MS.gene005023.t1 AT2G02250 38.129 278 145 9 4 275 47 303 8.69e-49 164
MS.gene005023.t1 AT2G02340 37.770 278 161 7 1 275 33 301 1.55e-45 155
MS.gene005023.t1 AT2G02240 37.455 275 154 8 2 275 59 316 2.06e-45 155
MS.gene005023.t1 AT1G56240 38.462 286 150 9 7 275 4 280 2.72e-45 154
MS.gene005023.t1 AT2G02230 32.911 316 155 11 4 276 32 333 6.06e-44 152
MS.gene005023.t1 AT1G56250 38.328 287 151 9 7 276 4 281 2.82e-43 149
MS.gene005023.t1 AT1G09155 35.315 286 161 9 7 276 3 280 1.25e-41 145
MS.gene005023.t1 AT2G02300 34.520 281 147 8 2 276 32 281 5.34e-39 138
MS.gene005023.t1 AT2G02310 31.655 278 171 7 2 276 43 304 4.84e-37 133
MS.gene005023.t1 AT2G02350 32.852 277 167 7 2 275 22 282 5.39e-37 133
MS.gene005023.t1 AT2G02320 33.942 274 160 8 6 275 42 298 9.51e-37 132
MS.gene005023.t1 AT5G24560 43.333 150 69 6 4 149 3 140 7.73e-29 108
MS.gene005023.t1 AT3G53000 25.524 286 179 8 3 275 20 284 1.54e-15 75.5
MS.gene005023.t1 AT1G63090 24.762 210 139 5 3 199 25 228 3.35e-13 68.6
MS.gene005023.t1 AT3G61060 23.958 192 131 3 6 185 27 215 1.03e-12 67.4
MS.gene005023.t1 AT1G12710 25.962 208 133 6 6 199 30 230 1.16e-12 67.0
MS.gene005023.t1 AT2G02350 30.968 155 95 5 124 275 20 165 1.93e-12 64.7
MS.gene005023.t1 AT3G61060 25.000 192 128 4 6 185 27 214 4.26e-12 65.5

Find 65 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCAATTCCGACGAAGTA+TGG 0.211519 1.3:-56347010 MS.gene005023:CDS
TACGCCACATACTGAGTATT+TGG 0.214019 1.3:+56344391 None:intergenic
TTTGGATTTCTTCATATTCT+AGG 0.214179 1.3:+56344134 None:intergenic
CGTTGGCAAGGGAAGGAAAT+TGG 0.233967 1.3:+56346940 None:intergenic
ATTCCATACTTCGTCGGAAT+TGG 0.295629 1.3:+56347007 None:intergenic
TTCAAGATGGCTGATGTCTT+TGG 0.297218 1.3:-56344361 MS.gene005023:CDS
ATTGGGGAGTTCTTCAATTT+AGG 0.298698 1.3:-56344157 MS.gene005023:CDS
TCTCGACATTAACATTCATT+TGG 0.342853 1.3:+56344116 None:intergenic
TGATTCCCATGCATCATTCC+AGG 0.367183 1.3:-56346663 MS.gene005023:intron
GAATGTTAATGTCGAGATAA+AGG 0.367552 1.3:-56344110 MS.gene005023:CDS
GGCGGCAGAACGGAAGGTTT+TGG 0.368079 1.3:+56347028 None:intergenic
CAAAAGAATGGCGGCGTTTG+AGG 0.380046 1.3:-56347126 None:intergenic
ACGCCACATACTGAGTATTT+GGG 0.381358 1.3:+56344392 None:intergenic
TCATCAAGCTCAGCAACTTC+AGG 0.390519 1.3:+56344463 None:intergenic
AGATGACAGTGTCGATGAAT+TGG 0.394916 1.3:+56346964 None:intergenic
CTGAGCTTGATGATGTTTGT+GGG 0.398290 1.3:-56344453 MS.gene005023:CDS
TAGTTGATGGAATAGAAGTT+AGG 0.404080 1.3:-56344063 MS.gene005023:CDS
TGAAATGTAGAGCTTTCAAT+TGG 0.411607 1.3:-56346776 MS.gene005023:intron
GGTGGTTTGAGATTGAGATT+GGG 0.419831 1.3:-56344174 MS.gene005023:CDS
GGGTGGTTTGAGATTGAGAT+TGG 0.426113 1.3:-56344175 MS.gene005023:CDS
CCATACTTCGTCGGAATTGG+CGG 0.433366 1.3:+56347010 None:intergenic
GTTGGCAAGGGAAGGAAATT+GGG 0.445999 1.3:+56346941 None:intergenic
AGATCTCTCACATTTGATGA+TGG 0.452005 1.3:-56346715 MS.gene005023:CDS
GCTGAGCTTGATGATGTTTG+TGG 0.455966 1.3:-56344454 MS.gene005023:CDS
GATGACAGTGTCGATGAATT+GGG 0.463732 1.3:+56346965 None:intergenic
TGTATCCAAATGTAGAAAGT+AGG 0.464992 1.3:-56344261 MS.gene005023:CDS
GTTGCTTAATTATCTTACTT+AGG 0.474152 1.3:+56344040 None:intergenic
GGCGGCGTTTGAGGAATTGC+CGG 0.482289 1.3:-56347117 MS.gene005023:CDS
ATCAAAATACGTTTCCATTG+AGG 0.485145 1.3:+56346682 None:intergenic
GTATCCAAATGTAGAAAGTA+GGG 0.487141 1.3:-56344260 MS.gene005023:CDS
GTTTGTGGGATTGACATTTG+TGG 0.490073 1.3:-56344439 MS.gene005023:CDS
GTAGCATTATTATGATAATG+AGG 0.491702 1.3:+56344295 None:intergenic
ATAGCGGCAACACATTCTTC+CGG 0.493919 1.3:+56347098 None:intergenic
GAGAGTCTGACGGCGTCAAA+CGG 0.520309 1.3:+56347059 None:intergenic
TTGTCTAGAGCGAGAAGCGA+TGG 0.524530 1.3:-56344196 MS.gene005023:CDS
GTTAATGTCGAGATAAAGGA+TGG 0.526633 1.3:-56344106 MS.gene005023:CDS
GACGATCTTCAGTGATGATA+CGG 0.526769 1.3:+56346877 None:intergenic
GGGCACAAGAACAGTGAAGT+AGG 0.547355 1.3:-56344238 MS.gene005023:CDS
GTGGAAGCGTTGGCAAGGGA+AGG 0.548072 1.3:+56346933 None:intergenic
AGCAAACCTGGAATGATGCA+TGG 0.553504 1.3:+56346657 None:intergenic
AGTGTCGATGAATTGGGAAT+CGG 0.553699 1.3:+56346971 None:intergenic
GTGGTTTGAGATTGAGATTG+GGG 0.561075 1.3:-56344173 MS.gene005023:CDS
GTCCCCAAATACTCAGTATG+TGG 0.561633 1.3:-56344395 MS.gene005023:CDS
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.3:-56346763 MS.gene005023:CDS
GGAATTGGCGGCAGAACGGA+AGG 0.580414 1.3:+56347022 None:intergenic
ACACGAACTGTGAATTCCAC+AGG 0.583835 1.3:+56344325 None:intergenic
GCAAACCTGGAATGATGCAT+GGG 0.587407 1.3:+56346658 None:intergenic
TGGACTTAATAGAATTCCTG+TGG 0.589791 1.3:-56344341 MS.gene005023:CDS
AAATTGATTCCATACTTCGT+CGG 0.591438 1.3:+56347001 None:intergenic
AGTATTTGGGGACAAGGCAA+TGG 0.593174 1.3:+56344405 None:intergenic
CGTCGGAATTGGCGGCAGAA+CGG 0.600254 1.3:+56347018 None:intergenic
TGTGGAATTCACAGTTCGTG+TGG 0.604190 1.3:-56344323 MS.gene005023:CDS
CGATGAATTGGGAATCGGAA+GGG 0.622940 1.3:+56346976 None:intergenic
CGCCACATACTGAGTATTTG+GGG 0.628472 1.3:+56344393 None:intergenic
TGTCTAGAGCGAGAAGCGAT+GGG 0.636331 1.3:-56344195 MS.gene005023:CDS
TATCCAAATGTAGAAAGTAG+GGG 0.637003 1.3:-56344259 MS.gene005023:CDS
CATCACTGAAGATCGTCGAA+AGG 0.642352 1.3:-56346871 MS.gene005023:intron
ATACTGAGTATTTGGGGACA+AGG 0.645914 1.3:+56344399 None:intergenic
ATCCAAATGTAGAAAGTAGG+GGG 0.657805 1.3:-56344258 MS.gene005023:CDS
GGCGTATCTTGTGTTCAAGA+TGG 0.658111 1.3:-56344374 MS.gene005023:CDS
TCGATGAATTGGGAATCGGA+AGG 0.660363 1.3:+56346975 None:intergenic
CTAGAGCGAGAAGCGATGGG+TGG 0.660567 1.3:-56344192 MS.gene005023:CDS
GGAAACGAGAGAGAGTCTGA+CGG 0.685849 1.3:+56347049 None:intergenic
TCTGACGGCGTCAAACGGAG+TGG 0.714597 1.3:+56347064 None:intergenic
AGTGGTACGAGAGAGTATAG+CGG 0.806673 1.3:+56347082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTCTCAAATAATAT+CGG + chr1.3:56345260-56345279 None:intergenic 10.0%
!! CTTGTAAAAAAAAAAAACAT+GGG + chr1.3:56345777-56345796 None:intergenic 15.0%
!! TAAGTTATATATGCTATTAT+AGG + chr1.3:56346480-56346499 None:intergenic 15.0%
!! TTGAATATAATTATATGTGT+CGG + chr1.3:56345672-56345691 None:intergenic 15.0%
!!! AATTTAATGATGTTTTCTTT+CGG - chr1.3:56346248-56346267 MS.gene005023:intron 15.0%
!!! TTTTAAGAAGTAAAACATTT+TGG + chr1.3:56345047-56345066 None:intergenic 15.0%
!! AATAGACTAATATATAGATG+AGG + chr1.3:56346110-56346129 None:intergenic 20.0%
!! ACTAGTAGAATACAATTATA+TGG - chr1.3:56346016-56346035 MS.gene005023:intron 20.0%
!! AGTTATGATGTTATCAAAAA+GGG - chr1.3:56345127-56345146 MS.gene005023:intron 20.0%
!! ATAATGAGAAAATGATAGTA+TGG + chr1.3:56345830-56345849 None:intergenic 20.0%
!! ATAATTCAATATAAATGCGT+CGG + chr1.3:56344731-56344750 None:intergenic 20.0%
!! ATCATAAAATCTTATAGATG+AGG + chr1.3:56345170-56345189 None:intergenic 20.0%
!! ATTCTTATTATACCCAAAAA+TGG - chr1.3:56345279-56345298 MS.gene005023:intron 20.0%
!! CCTTGTAAAAAAAAAAAACA+TGG + chr1.3:56345778-56345797 None:intergenic 20.0%
!! TAATGAGAAAATGATAGTAT+GGG + chr1.3:56345829-56345848 None:intergenic 20.0%
!!! ATTTTCTTGTAAAAAGAACA+TGG + chr1.3:56344838-56344857 None:intergenic 20.0%
!!! CCATGTTTTTTTTTTTTACA+AGG - chr1.3:56345775-56345794 MS.gene005023:intron 20.0%
!!! TCTAACAAAAATCCATTTTT+GGG + chr1.3:56345294-56345313 None:intergenic 20.0%
!!! TTATTTGAAACTAAACTATG+CGG + chr1.3:56345918-56345937 None:intergenic 20.0%
!!! TTCTAACAAAAATCCATTTT+TGG + chr1.3:56345295-56345314 None:intergenic 20.0%
!!! TTTTAAGAAGTAAAACGTTT+TGG + chr1.3:56345984-56346003 None:intergenic 20.0%
!!! TTTTCTTGTAAAAAGAACAT+GGG + chr1.3:56344837-56344856 None:intergenic 20.0%
! AAAGATTATAATGTAGGAAC+TGG + chr1.3:56346659-56346678 None:intergenic 25.0%
! AAGATTATAATGTAGGAACT+GGG + chr1.3:56346658-56346677 None:intergenic 25.0%
! AATTGAGGTATGTAGAAAAA+TGG - chr1.3:56346416-56346435 MS.gene005023:intron 25.0%
! ACAGAATCATTTGATCATTT+CGG + chr1.3:56345325-56345344 None:intergenic 25.0%
! AGATGCAAAGATTATAATGT+AGG + chr1.3:56346665-56346684 None:intergenic 25.0%
! AGTTATGCTGTTAACAAAAT+GGG - chr1.3:56346059-56346078 MS.gene005023:intron 25.0%
! AGTTCATTGTATACTAATAG+TGG - chr1.3:56344366-56344385 MS.gene005023:CDS 25.0%
! ATAAAGTTTGACAATGTACT+CGG - chr1.3:56345934-56345953 MS.gene005023:intron 25.0%
! ATAATGAGAAAATGATAGCA+TGG + chr1.3:56344878-56344897 None:intergenic 25.0%
! CAGGTTCATTAACTAAAAAT+TGG + chr1.3:56346569-56346588 None:intergenic 25.0%
! CAGTTATGATGTTATCAAAA+AGG - chr1.3:56345126-56345145 MS.gene005023:intron 25.0%
! GACAAATGAAGAATCTATAT+AGG + chr1.3:56346612-56346631 None:intergenic 25.0%
! GTAAGATAAATTAACAGTAC+AGG + chr1.3:56346588-56346607 None:intergenic 25.0%
! GTTCATTAACTAAAAATTGG+AGG + chr1.3:56346566-56346585 None:intergenic 25.0%
! GTTTCAAATAAAGTTTGACA+AGG - chr1.3:56344990-56345009 MS.gene005023:intron 25.0%
! TAATGAGAAAATGATAGCAT+GGG + chr1.3:56344877-56344896 None:intergenic 25.0%
! TAATTGACTATAGTTTCTAC+AGG + chr1.3:56345486-56345505 None:intergenic 25.0%
! TATTCTCAAATAATATCGGA+GGG + chr1.3:56345256-56345275 None:intergenic 25.0%
! TGAAATACTTCAGTTATTCT+TGG - chr1.3:56346534-56346553 MS.gene005023:intron 25.0%
! TTATTCTCAAATAATATCGG+AGG + chr1.3:56345257-56345276 None:intergenic 25.0%
! TTCCAATTTCTCCAATATTA+GGG - chr1.3:56344333-56344352 MS.gene005023:CDS 25.0%
! TTTGGATTTCTTCATATTCT+AGG + chr1.3:56347042-56347061 None:intergenic 25.0%
!! GTAGCATTATTATGATAATG+AGG + chr1.3:56346881-56346900 None:intergenic 25.0%
!!! TTTTTGTACTACTTTTGGAT+AGG - chr1.3:56346684-56346703 MS.gene005023:CDS 25.0%
AAATGGATGTCCTTTAAGTA+AGG - chr1.3:56346433-56346452 MS.gene005023:intron 30.0%
AACCCTAATATTGGAGAAAT+TGG + chr1.3:56344338-56344357 None:intergenic 30.0%
AATGAGAAAATGATAGCATG+GGG + chr1.3:56344876-56344895 None:intergenic 30.0%
AATGGATGTCCTTTAAGTAA+GGG - chr1.3:56346434-56346453 MS.gene005023:intron 30.0%
ACACTTATCATGAGAAATTG+AGG - chr1.3:56346401-56346420 MS.gene005023:intron 30.0%
ACTTGAGTATAATGTGAACA+GGG + chr1.3:56344910-56344929 None:intergenic 30.0%
AGAATTAAGCTCTTCCTTAT+AGG + chr1.3:56345201-56345220 None:intergenic 30.0%
ATAAGGAAGAGCTTAATTCT+AGG - chr1.3:56345201-56345220 MS.gene005023:intron 30.0%
ATAATGTGAACATGGTAACA+TGG + chr1.3:56345854-56345873 None:intergenic 30.0%
ATCAAAATACGTTTCCATTG+AGG + chr1.3:56344494-56344513 None:intergenic 30.0%
ATGATAGTATGGGTGAATAA+TGG + chr1.3:56345819-56345838 None:intergenic 30.0%
CAGTTATGCTGTTAACAAAA+TGG - chr1.3:56346058-56346077 MS.gene005023:intron 30.0%
CTAGTAGAATACAGTTATAG+TGG - chr1.3:56345084-56345103 MS.gene005023:intron 30.0%
CTTCCAATTTCTCCAATATT+AGG - chr1.3:56344332-56344351 MS.gene005023:CDS 30.0%
GAATGTTAATGTCGAGATAA+AGG - chr1.3:56347063-56347082 MS.gene005023:CDS 30.0%
GATAACATCATAACTGATGT+AGG + chr1.3:56345122-56345141 None:intergenic 30.0%
GTATCCAAATGTAGAAAGTA+GGG - chr1.3:56346913-56346932 MS.gene005023:CDS 30.0%
GTTATGCTGTTAACAAAATG+GGG - chr1.3:56346060-56346079 MS.gene005023:intron 30.0%
TACTTGAGTATAATGTGAAC+AGG + chr1.3:56344911-56344930 None:intergenic 30.0%
TATCCAAATGTAGAAAGTAG+GGG - chr1.3:56346914-56346933 MS.gene005023:CDS 30.0%
TCAACGATAAACCCTAATAT+TGG + chr1.3:56344347-56344366 None:intergenic 30.0%
TCAATTTCTCATGATAAGTG+TGG + chr1.3:56346402-56346421 None:intergenic 30.0%
TCTCGACATTAACATTCATT+TGG + chr1.3:56347060-56347079 None:intergenic 30.0%
TGAAATGTAGAGCTTTCAAT+TGG - chr1.3:56344397-56344416 MS.gene005023:CDS 30.0%
TGTATCCAAATGTAGAAAGT+AGG - chr1.3:56346912-56346931 MS.gene005023:CDS 30.0%
TTGTGACAAAATAATAGCCT+AGG + chr1.3:56346353-56346372 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.3:56344410-56344429 MS.gene005023:CDS 30.0%
! AAATTGATTCCATACTTCGT+CGG + chr1.3:56344175-56344194 None:intergenic 30.0%
! AGAGCTTAATTCTAGGAAAA+TGG - chr1.3:56345208-56345227 MS.gene005023:intron 30.0%
! ATAAAGTTTGACAAGGTACT+CGG - chr1.3:56344997-56345016 MS.gene005023:intron 30.0%
! CATTTTGTTAACAGCATAAC+TGG + chr1.3:56346060-56346079 None:intergenic 30.0%
! GATTCTGACAGTAGAATTTT+TGG + chr1.3:56346296-56346315 None:intergenic 30.0%
! GCATCTTTTTGTACTACTTT+TGG - chr1.3:56346679-56346698 MS.gene005023:CDS 30.0%
! TATTTGAAATGCATGATTCC+AGG - chr1.3:56345516-56345535 MS.gene005023:intron 30.0%
!! AACACATGTCTTTTAGTTGA+TGG - chr1.3:56347097-56347116 MS.gene005023:CDS 30.0%
!! TAGTTGATGGAATAGAAGTT+AGG - chr1.3:56347110-56347129 MS.gene005023:CDS 30.0%
!!! ATGGTTTTTTATTGCCTCAA+TGG - chr1.3:56344477-56344496 MS.gene005023:intron 30.0%
!!! GAGATAAAGATCCTTTTTTG+TGG + chr1.3:56344262-56344281 None:intergenic 30.0%
!!! TTCGGATTTTATTTTTGCCA+TGG - chr1.3:56346266-56346285 MS.gene005023:intron 30.0%
ACATGATACCAATCAAACAC+CGG + chr1.3:56345643-56345662 None:intergenic 35.0%
ACTCGAGTATAATGTGAACA+TGG + chr1.3:56345862-56345881 None:intergenic 35.0%
AGAAAAGTTAAGAGCAAACC+TGG + chr1.3:56344531-56344550 None:intergenic 35.0%
AGAAGGAATGTCTGAAAATG+GGG + chr1.3:56344960-56344979 None:intergenic 35.0%
AGATCTCTCACATTTGATGA+TGG - chr1.3:56344458-56344477 MS.gene005023:CDS 35.0%
ATAATGTGAACAGGGTAACA+TGG + chr1.3:56344902-56344921 None:intergenic 35.0%
ATCCAAATGTAGAAAGTAGG+GGG - chr1.3:56346915-56346934 MS.gene005023:CDS 35.0%
ATGAGAAAATGATAGCATGG+GGG + chr1.3:56344875-56344894 None:intergenic 35.0%
ATTAAGCTCTTCCTTATAGG+AGG + chr1.3:56345198-56345217 None:intergenic 35.0%
ATTGGGGAGTTCTTCAATTT+AGG - chr1.3:56347016-56347035 MS.gene005023:CDS 35.0%
CAGAAGGAATGTCTGAAAAT+GGG + chr1.3:56344961-56344980 None:intergenic 35.0%
GTGCTTCATAGCTACTTATT+GGG + chr1.3:56344609-56344628 None:intergenic 35.0%
GTTAATGTCGAGATAAAGGA+TGG - chr1.3:56347067-56347086 MS.gene005023:CDS 35.0%
TAACCTTCTCCCTTACTTAA+AGG + chr1.3:56346446-56346465 None:intergenic 35.0%
TAATAGCCTAGGTAATTCAC+TGG + chr1.3:56346342-56346361 None:intergenic 35.0%
TATAGTTTCTACAGGCATGT+AGG + chr1.3:56345478-56345497 None:intergenic 35.0%
TATGAAGCACATATACTCCT+CGG - chr1.3:56344619-56344638 MS.gene005023:intron 35.0%
TATGATTTCTGCCTCCTATA+AGG - chr1.3:56345184-56345203 MS.gene005023:intron 35.0%
TATTACCAGTGTCATATGTC+AGG - chr1.3:56344767-56344786 MS.gene005023:intron 35.0%
TGGACTTAATAGAATTCCTG+TGG - chr1.3:56346832-56346851 MS.gene005023:intron 35.0%
TGTGCTTCATAGCTACTTAT+TGG + chr1.3:56344610-56344629 None:intergenic 35.0%
TTGAAACTAAACTACGCAGA+AGG + chr1.3:56344977-56344996 None:intergenic 35.0%
TTGAAACTAAACTATGCGGA+AGG + chr1.3:56345914-56345933 None:intergenic 35.0%
! AGATATTTGAAATGCACACC+CGG - chr1.3:56345404-56345423 MS.gene005023:intron 35.0%
!! GTTATCAAAAAGGGTGTCTT+GGG - chr1.3:56345136-56345155 MS.gene005023:intron 35.0%
!! TGTTATCAAAAAGGGTGTCT+TGG - chr1.3:56345135-56345154 MS.gene005023:intron 35.0%
!!! GTAGAATTTTTGGCATTCCA+TGG + chr1.3:56346286-56346305 None:intergenic 35.0%
AAACACCTGACATATGACAC+TGG + chr1.3:56344775-56344794 None:intergenic 40.0%
AAGCACCTATACTCGGATTA+GGG - chr1.3:56345608-56345627 MS.gene005023:intron 40.0%
AAGGAATGTCTGAAAATGGG+GGG + chr1.3:56344958-56344977 None:intergenic 40.0%
ACACATATACTCCTCGGATT+AGG - chr1.3:56344675-56344694 MS.gene005023:intron 40.0%
ACGCCACATACTGAGTATTT+GGG + chr1.3:56346784-56346803 None:intergenic 40.0%
AGAAAAGTTAAGCGCAAACC+TGG + chr1.3:56345537-56345556 None:intergenic 40.0%
AGCTAACTAGGTTACATGTG+TGG - chr1.3:56346197-56346216 MS.gene005023:intron 40.0%
ATACTGAGTATTTGGGGACA+AGG + chr1.3:56346777-56346796 None:intergenic 40.0%
ATGCTGTTAACAAAATGGGG+CGG - chr1.3:56346063-56346082 MS.gene005023:intron 40.0%
ATTCCATACTTCGTCGGAAT+TGG + chr1.3:56344169-56344188 None:intergenic 40.0%
CTTCATAGCTACTTATTGGG+TGG + chr1.3:56344606-56344625 None:intergenic 40.0%
GAAGGAATGTCTGAAAATGG+GGG + chr1.3:56344959-56344978 None:intergenic 40.0%
GACGATCTTCAGTGATGATA+CGG + chr1.3:56344299-56344318 None:intergenic 40.0%
GCAGAAGGAATGTCTGAAAA+TGG + chr1.3:56344962-56344981 None:intergenic 40.0%
GGTGCTTCATAGCTACTTAT+TGG + chr1.3:56345595-56345614 None:intergenic 40.0%
GTGTCAGACATGATACGTAT+CGG + chr1.3:56344659-56344678 None:intergenic 40.0%
GTTAACAGCATAACTGGTGT+AGG + chr1.3:56346054-56346073 None:intergenic 40.0%
GTTTGTGGGATTGACATTTG+TGG - chr1.3:56346734-56346753 MS.gene005023:CDS 40.0%
TACGCCACATACTGAGTATT+TGG + chr1.3:56346785-56346804 None:intergenic 40.0%
TGAGAAAATGATAGCATGGG+GGG + chr1.3:56344874-56344893 None:intergenic 40.0%
TGCATGTGTAGAAGCTAACT+AGG - chr1.3:56346185-56346204 MS.gene005023:intron 40.0%
TGTCAGACATGATACGTATC+GGG + chr1.3:56344658-56344677 None:intergenic 40.0%
TGTCCTTTAAGTAAGGGAGA+AGG - chr1.3:56346440-56346459 MS.gene005023:intron 40.0%
TGTCTGACACATATACTCCT+CGG - chr1.3:56344669-56344688 MS.gene005023:intron 40.0%
TGTTGACACGTCTGTATTTG+AGG - chr1.3:56345721-56345740 MS.gene005023:intron 40.0%
TTCAAGATGGCTGATGTCTT+TGG - chr1.3:56346812-56346831 MS.gene005023:intron 40.0%
! AGATATTTGAAATGCACCCC+CGG - chr1.3:56346138-56346157 MS.gene005023:intron 40.0%
! AGCTATGAAGCACCTATACT+CGG - chr1.3:56345601-56345620 MS.gene005023:intron 40.0%
! GGTGGTTTGAGATTGAGATT+GGG - chr1.3:56346999-56347018 MS.gene005023:CDS 40.0%
! GTGGTTTGAGATTGAGATTG+GGG - chr1.3:56347000-56347019 MS.gene005023:CDS 40.0%
!! AGATGACAGTGTCGATGAAT+TGG + chr1.3:56344212-56344231 None:intergenic 40.0%
!! AGTGTCGATGAATTGGGAAT+CGG + chr1.3:56344205-56344224 None:intergenic 40.0%
!! CTGAGCTTGATGATGTTTGT+GGG - chr1.3:56346720-56346739 MS.gene005023:CDS 40.0%
!! GATGACAGTGTCGATGAATT+GGG + chr1.3:56344211-56344230 None:intergenic 40.0%
!!! ATCCTTTTTTGTGGAAGCGT+TGG + chr1.3:56344253-56344272 None:intergenic 40.0%
AAAGATGAAGTCACCCTAGC+CGG + chr1.3:56345426-56345445 None:intergenic 45.0%
ACACGAACTGTGAATTCCAC+AGG + chr1.3:56346851-56346870 None:intergenic 45.0%
AGCAAACCTGGAATGATGCA+TGG + chr1.3:56344519-56344538 None:intergenic 45.0%
AGTATTTGGGGACAAGGCAA+TGG + chr1.3:56346771-56346790 None:intergenic 45.0%
ATAGCGGCAACACATTCTTC+CGG + chr1.3:56344078-56344097 None:intergenic 45.0%
CATCACTGAAGATCGTCGAA+AGG - chr1.3:56344302-56344321 MS.gene005023:CDS 45.0%
CGATGAATTGGGAATCGGAA+GGG + chr1.3:56344200-56344219 None:intergenic 45.0%
CGCCACATACTGAGTATTTG+GGG + chr1.3:56346783-56346802 None:intergenic 45.0%
CGGAAGGAATGTTTGACTAC+GGG + chr1.3:56345898-56345917 None:intergenic 45.0%
GAAGGAATGTTTGACTACGG+GGG + chr1.3:56345896-56345915 None:intergenic 45.0%
GCAAACCTGGAATGATGCAT+GGG + chr1.3:56344518-56344537 None:intergenic 45.0%
GCACATATACTCCTCGGATT+AGG - chr1.3:56344625-56344644 MS.gene005023:intron 45.0%
GCGGAAGGAATGTTTGACTA+CGG + chr1.3:56345899-56345918 None:intergenic 45.0%
GGAAGGAATGTTTGACTACG+GGG + chr1.3:56345897-56345916 None:intergenic 45.0%
GGCGTATCTTGTGTTCAAGA+TGG - chr1.3:56346799-56346818 MS.gene005023:intron 45.0%
GTCCCCAAATACTCAGTATG+TGG - chr1.3:56346778-56346797 MS.gene005023:intron 45.0%
GTTGGCAAGGGAAGGAAATT+GGG + chr1.3:56344235-56344254 None:intergenic 45.0%
TCATCAAGCTCAGCAACTTC+AGG + chr1.3:56346713-56346732 None:intergenic 45.0%
TCGATGAATTGGGAATCGGA+AGG + chr1.3:56344201-56344220 None:intergenic 45.0%
TGATTCCCATGCATCATTCC+AGG - chr1.3:56344510-56344529 MS.gene005023:intron 45.0%
TGCCAACGCTTCCACAAAAA+AGG - chr1.3:56344248-56344267 MS.gene005023:CDS 45.0%
TGCCCCCTACTTTCTACATT+TGG + chr1.3:56346920-56346939 None:intergenic 45.0%
TGTGGAATTCACAGTTCGTG+TGG - chr1.3:56346850-56346869 MS.gene005023:intron 45.0%
! AGTGGTACGAGAGAGTATAG+CGG + chr1.3:56344094-56344113 None:intergenic 45.0%
! GAAGCACCTATACTCGGATT+AGG - chr1.3:56345607-56345626 MS.gene005023:intron 45.0%
! GGGTGGTTTGAGATTGAGAT+TGG - chr1.3:56346998-56347017 MS.gene005023:CDS 45.0%
! GTAGGCTAGTTAGCTTCTAC+AGG + chr1.3:56345460-56345479 None:intergenic 45.0%
!! GCTGAGCTTGATGATGTTTG+TGG - chr1.3:56346719-56346738 MS.gene005023:CDS 45.0%
!!! TTTTGTGGAAGCGTTGGCAA+GGG + chr1.3:56344247-56344266 None:intergenic 45.0%
!!! TTTTTGTGGAAGCGTTGGCA+AGG + chr1.3:56344248-56344267 None:intergenic 45.0%
AAGATGAAGTCACCCTAGCC+GGG + chr1.3:56345425-56345444 None:intergenic 50.0%
ATGATAGCATGGGGGGAACA+TGG + chr1.3:56344867-56344886 None:intergenic 50.0%
ATTTGTCAAAGCAGCAGCCG+TGG - chr1.3:56346316-56346335 MS.gene005023:intron 50.0%
CCATACTTCGTCGGAATTGG+CGG + chr1.3:56344166-56344185 None:intergenic 50.0%
CCTAGGTAATTCACTGGCCA+CGG + chr1.3:56346336-56346355 None:intergenic 50.0%
CGTTGGCAAGGGAAGGAAAT+TGG + chr1.3:56344236-56344255 None:intergenic 50.0%
GGAAACGAGAGAGAGTCTGA+CGG + chr1.3:56344127-56344146 None:intergenic 50.0%
GGGCACAAGAACAGTGAAGT+AGG - chr1.3:56346935-56346954 MS.gene005023:CDS 50.0%
TTGAAATGCACACCCGGCTA+GGG - chr1.3:56345410-56345429 MS.gene005023:intron 50.0%
! TGTCTAGAGCGAGAAGCGAT+GGG - chr1.3:56346978-56346997 MS.gene005023:CDS 50.0%
! TTGTCTAGAGCGAGAAGCGA+TGG - chr1.3:56346977-56346996 MS.gene005023:CDS 50.0%
! TTTGAAATGCACACCCGGCT+AGG - chr1.3:56345409-56345428 MS.gene005023:intron 50.0%
!! GGAGGGTTTTGTCATCGTCA+TGG + chr1.3:56345239-56345258 None:intergenic 50.0%
ACGCGCCCTAATCCGAGTAT+AGG + chr1.3:56345616-56345635 None:intergenic 55.0%
AGATGAAGTCACCCTAGCCG+GGG + chr1.3:56345424-56345443 None:intergenic 55.0%
CCGCCAATTCCGACGAAGTA+TGG - chr1.3:56344163-56344182 MS.gene005023:CDS 55.0%
CCGTGGCCAGTGAATTACCT+AGG - chr1.3:56346333-56346352 MS.gene005023:intron 55.0%
GAGAGTCTGACGGCGTCAAA+CGG + chr1.3:56344117-56344136 None:intergenic 55.0%
GCGTGTCTCCGGTGTTTGAT+TGG - chr1.3:56345632-56345651 MS.gene005023:intron 55.0%
TTGAAATGCACCCCCGGCTA+GGG - chr1.3:56346144-56346163 MS.gene005023:intron 55.0%
! TTTGAAATGCACCCCCGGCT+AGG - chr1.3:56346143-56346162 MS.gene005023:intron 55.0%
CGTCGGAATTGGCGGCAGAA+CGG + chr1.3:56344158-56344177 None:intergenic 60.0%
CTAGAGCGAGAAGCGATGGG+TGG - chr1.3:56346981-56347000 MS.gene005023:CDS 60.0%
GATGAAGTCACCCTAGCCGG+GGG + chr1.3:56345423-56345442 None:intergenic 60.0%
GGAATTGGCGGCAGAACGGA+AGG + chr1.3:56344154-56344173 None:intergenic 60.0%
GGCGGCGTTTGAGGAATTGC+CGG - chr1.3:56344056-56344075 MS.gene005023:CDS 60.0%
TCTGACGGCGTCAAACGGAG+TGG + chr1.3:56344112-56344131 None:intergenic 60.0%
! GGCGGCAGAACGGAAGGTTT+TGG + chr1.3:56344148-56344167 None:intergenic 60.0%
!! GTGGAAGCGTTGGCAAGGGA+AGG + chr1.3:56344243-56344262 None:intergenic 60.0%
CGGGACACACGCCTAATCCG+AGG + chr1.3:56344639-56344658 None:intergenic 65.0%
! CGGATTAGGGCGCGTGTCTC+CGG - chr1.3:56345621-56345640 MS.gene005023:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56344054 56347141 56344054 ID=MS.gene005023
chr1.3 mRNA 56344054 56347141 56344054 ID=MS.gene005023.t1;Parent=MS.gene005023
chr1.3 exon 56346872 56347141 56346872 ID=MS.gene005023.t1.exon1;Parent=MS.gene005023.t1
chr1.3 CDS 56346872 56347141 56346872 ID=cds.MS.gene005023.t1;Parent=MS.gene005023.t1
chr1.3 exon 56346664 56346788 56346664 ID=MS.gene005023.t1.exon2;Parent=MS.gene005023.t1
chr1.3 CDS 56346664 56346788 56346664 ID=cds.MS.gene005023.t1;Parent=MS.gene005023.t1
chr1.3 exon 56344054 56344489 56344054 ID=MS.gene005023.t1.exon3;Parent=MS.gene005023.t1
chr1.3 CDS 56344054 56344489 56344054 ID=cds.MS.gene005023.t1;Parent=MS.gene005023.t1
Gene Sequence

>MS.gene005023

ATGGCGGCGTTTGAGGAATTGCCGGAAGAATGTGTTGCCGCTATACTCTCTCGTACCACTCCGTTTGACGCCGTCAGACTCTCTCTCGTTTCCAAAACCTTCCGTTCTGCCGCCAATTCCGACGAAGTATGGAATCAATTTCTCCCTTCCGATTCCCAATTCATCGACACTGTCATCTCCCAATTTCCTTCCCTTGCCAACGCTTCCACAAAAAAGGATCTTTATCTCGCTCTTTCTGATTGCCGTATCATCACTGAAGATCGTCGAAAGGTATTCTTCTTCCAATTTCTCCAATATTAGGGTTTATCGTTGAGTTCATTGTATACTAATAGTGGTTTCATGTTGAAATGTAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAATTGTTACATGATTGCTGCTAGATCTCTCACATTTGATGATGGTTTTTTATTGCCTCAATGGAAACGTATTTTGATTCCCATGCATCATTCCAGGTTTGCTCTTAACTTTTCTATCTGTTTTGTTTTATTGTTTTTTATGTTAATTATACTATTATTTCATATTACCACCCAATAAGTAGCTATGAAGCACATATACTCCTCGGATTAGGCGTGTGTCCCGATACGTATCATGTCTGACACATATACTCCTCGGATTAGGCGTGTGTCCCGATACGTATCATGTCTGACACCGACGCATTTATATTGAATTATGTCAATTTTCTCAAATTATTACCAGTGTCATATGTCAGGTGTTTGTGTCTGAGTCTATGCTTCATAGATAAGTACTACTAGTACCCATGTTCTTTTTACAAGAAAATCGAATTCCATGTTCCCCCCATGCTATCATTTTCTCATTATTCCATGTTACCCTGTTCACATTATACTCAAGTAATTTAATAAAATACAACTTGAGTTCCCCCCATTTTCAGACATTCCTTCTGCGTAGTTTAGTTTCAAATAAAGTTTGACAAGGTACTCGGTAATCTCGAGTTGACTACTTGTTTCCAAAATGTTTTACTTCTTAAAAGAAAAAAAATTGTGTGACTAGTAGAATACAGTTATAGTGGAATATTTCTTGACCTACATCAGTTATGATGTTATCAAAAAGGGTGTCTTGGGATTGAACTCCTCATCTATAAGATTTTATGATTTCTGCCTCCTATAAGGAAGAGCTTAATTCTAGGAAAATGGAATTTCCATGACGATGACAAAACCCTCCGATATTATTTGAGAATAAAAATTCTTATTATACCCAAAAATGGATTTTTGTTAGAATCATTAGCCGAAATGATCAAATGATTCTGTTGATACATTCGAGTAATTAAACATTTTACAATTAGTAAACTATAGTCAATTATCTGCTCAGATATTTGAAATGCACACCCGGCTAGGGTGACTTCATCTTTACATTTGCATGCCTGTAGAAGCTAACTAGCCTACATGCCTGTAGAAACTATAGTCAATTATCTGCTCAGATATTTGAAATGCATGATTCCAGGTTTGCGCTTAACTTTTCTATCTGTTGTGTTTTATTATTTTCGTATATTACCACCCAATAAGTAGCTATGAAGCACCTATACTCGGATTAGGGCGCGTGTCTCCGGTGTTTGATTGGTATCATGTCTGACACCGACACATATAATTATATTCAATTATGTCATTTTTCTTAAATTATTATTAATGTTGACACGTCTGTATTTGAGGTTTTGCTTCATAGATAAGTACTTACTAGTACCCATGTTTTTTTTTTTTACAAGGAAATTGAATTTCATGTTACCATTATTCACCCATACTATCATTTTCTCATTATTCCATGTTACCATGTTCACATTATACTCGAGTTGTATTGAATTCCCCCGTAGTCAAACATTCCTTCCGCATAGTTTAGTTTCAAATAAAGTTTGACAATGTACTCGGTAAACTCGAGTTGACTACTTGTTTCCAAAACGTTTTACTTCTTAAAAAAAAAATGTGTGACTAGTAGAATACAATTATATGGAATATTTCTAGACCTACACCAGTTATGCTGTTAACAAAATGGGGCGGCATTTGTCTTTGCATTGAACTCCTCATCTATATATTAGTCTATTATCTGCTCAGATATTTGAAATGCACCCCCGGCTAGGGTGACTTCATCTTTACATTTGCATGTGTAGAAGCTAACTAGGTTACATGTGTGGAAACTGTACACACATTGAAGATGCACTAAATTTAATGATGTTTTCTTTCGGATTTTATTTTTGCCATGGAATGCCAAAAATTCTACTGTCAGAATCATTTGTCAAAGCAGCAGCCGTGGCCAGTGAATTACCTAGGCTATTATTTTGTCACAATCAGCACTTGTCTATGTTGCTTATATCCACACTTATCATGAGAAATTGAGGTATGTAGAAAAATGGATGTCCTTTAAGTAAGGGAGAAGGTTAATGCTAGATTTCCTATAATAGCATATATAACTTACTAACTGAGATGTCTGTCATAATCAGTTTCAACTTGAAATACTTCAGTTATTCTTGGCAACAGCCTCCAATTTTTAGTTAATGAACCTGTACTGTTAATTTATCTTACACCTATATAGATTCTTCATTTGTCAGTGAACTACTTTCAACTTTTCTCCCAGTTCCTACATTATAATCTTTGCATCTTTTTGTACTACTTTTGGATAGGTTTCCTGAAGTTGCTGAGCTTGATGATGTTTGTGGGATTGACATTTGTGGTATGATAAACACCATTGCCTTGTCCCCAAATACTCAGTATGTGGCGTATCTTGTGTTCAAGATGGCTGATGTCTTTGGACTTAATAGAATTCCTGTGGAATTCACAGTTCGTGTGGAAAATCCTCATTATCATAATAATGCTACAATTGTCTGTTTGTATCCAAATGTAGAAAGTAGGGGGCACAAGAACAGTGAAGTAGGATTGCAACTAGTAGAAGTGTTGTCTAGAGCGAGAAGCGATGGGTGGTTTGAGATTGAGATTGGGGAGTTCTTCAATTTAGGCCTAGAATATGAAGAAATCCAAATGAATGTTAATGTCGAGATAAAGGATGGTTTTCTGAACACATGTCTTTTAGTTGATGGAATAGAAGTTAGGCCTAAGTAA
Protein sequence

>MS.gene005023.t1

MAAFEELPEECVAAILSRTTPFDAVRLSLVSKTFRSAANSDEVWNQFLPSDSQFIDTVISQFPSLANASTKKDLYLALSDCRIITEDRRKSFQLDRKSGKNCYMIAARSLTFDDGFLLPQWKRILIPMHHSRFPEVAELDDVCGIDICGMINTIALSPNTQYVAYLVFKMADVFGLNRIPVEFTVRVENPHYHNNATIVCLYPNVESRGHKNSEVGLQLVEVLSRARSDGWFEIEIGEFFNLGLEYEEIQMNVNVEIKDGFLNTCLLVDGIEVRPK