Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49090.t1 | XP_013469665.1 | 93.5 | 278 | 15 | 2 | 1 | 278 | 1 | 275 | 4.00E-144 | 520.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49090.t1 | Q9ZVQ6 | 43.4 | 274 | 133 | 5 | 4 | 274 | 14 | 268 | 2.0e-59 | 230.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49090.t1 | G8A220 | 93.5 | 278 | 15 | 2 | 1 | 278 | 1 | 275 | 2.9e-144 | 520.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49090.t1 | MTR_1g100597 | 93.525 | 278 | 15 | 2 | 1 | 278 | 1 | 275 | 0.0 | 527 |
MS.gene49090.t1 | MTR_1g079370 | 72.727 | 275 | 65 | 1 | 1 | 275 | 1 | 265 | 3.35e-144 | 405 |
MS.gene49090.t1 | MTR_1g079180 | 74.101 | 278 | 56 | 4 | 1 | 275 | 1 | 265 | 9.46e-143 | 402 |
MS.gene49090.t1 | MTR_1g079230 | 70.070 | 284 | 71 | 4 | 1 | 278 | 1 | 276 | 1.53e-139 | 394 |
MS.gene49090.t1 | MTR_1g079260 | 70.251 | 279 | 78 | 2 | 1 | 278 | 1 | 275 | 1.68e-139 | 394 |
MS.gene49090.t1 | MTR_1g079460 | 70.463 | 281 | 68 | 2 | 1 | 278 | 1 | 269 | 2.13e-138 | 391 |
MS.gene49090.t1 | MTR_1g079200 | 71.071 | 280 | 60 | 4 | 1 | 275 | 1 | 264 | 7.09e-135 | 382 |
MS.gene49090.t1 | MTR_1g100613 | 80.000 | 240 | 47 | 1 | 20 | 258 | 5 | 244 | 8.88e-135 | 381 |
MS.gene49090.t1 | MTR_1g079850 | 69.366 | 284 | 81 | 4 | 1 | 278 | 1 | 284 | 1.89e-132 | 376 |
MS.gene49090.t1 | MTR_1g079380 | 71.583 | 278 | 69 | 1 | 1 | 278 | 1 | 268 | 7.79e-132 | 375 |
MS.gene49090.t1 | MTR_3g006850 | 64.262 | 305 | 78 | 7 | 3 | 278 | 16 | 318 | 5.30e-121 | 348 |
MS.gene49090.t1 | MTR_1g079250 | 66.316 | 285 | 85 | 6 | 1 | 278 | 1 | 281 | 1.57e-115 | 334 |
MS.gene49090.t1 | MTR_1g026510 | 61.034 | 290 | 97 | 7 | 1 | 278 | 1 | 286 | 1.65e-112 | 327 |
MS.gene49090.t1 | MTR_3g452600 | 61.455 | 275 | 92 | 2 | 4 | 278 | 10 | 270 | 1.88e-111 | 323 |
MS.gene49090.t1 | MTR_3g450990 | 55.290 | 293 | 97 | 4 | 4 | 278 | 10 | 286 | 4.77e-99 | 291 |
MS.gene49090.t1 | MTR_1g079410 | 55.596 | 277 | 105 | 4 | 5 | 275 | 9 | 273 | 6.95e-99 | 291 |
MS.gene49090.t1 | MTR_2g079100 | 58.088 | 272 | 94 | 4 | 3 | 272 | 8 | 261 | 1.41e-96 | 285 |
MS.gene49090.t1 | MTR_1g079350 | 55.944 | 286 | 104 | 8 | 1 | 275 | 1 | 275 | 5.06e-94 | 278 |
MS.gene49090.t1 | MTR_1g079140 | 48.322 | 298 | 130 | 5 | 4 | 278 | 13 | 309 | 2.21e-85 | 258 |
MS.gene49090.t1 | MTR_1g079340 | 52.508 | 299 | 105 | 8 | 1 | 275 | 40 | 325 | 3.78e-85 | 258 |
MS.gene49090.t1 | MTR_7g096300 | 59.004 | 261 | 82 | 6 | 1 | 255 | 1 | 242 | 4.22e-83 | 265 |
MS.gene49090.t1 | MTR_1g079400 | 47.163 | 282 | 123 | 3 | 5 | 275 | 13 | 279 | 8.23e-82 | 248 |
MS.gene49090.t1 | MTR_1g078470 | 59.896 | 192 | 62 | 3 | 84 | 275 | 8 | 184 | 3.61e-72 | 219 |
MS.gene49090.t1 | MTR_7g112550 | 45.486 | 288 | 134 | 10 | 2 | 275 | 5 | 283 | 6.51e-72 | 223 |
MS.gene49090.t1 | MTR_1g083580 | 40.288 | 278 | 160 | 4 | 2 | 275 | 6 | 281 | 6.69e-66 | 207 |
MS.gene49090.t1 | MTR_1g079240 | 58.201 | 189 | 58 | 4 | 87 | 275 | 12 | 179 | 3.87e-61 | 191 |
MS.gene49090.t1 | MTR_7g112560 | 39.855 | 276 | 145 | 8 | 4 | 276 | 1 | 258 | 5.66e-60 | 191 |
MS.gene49090.t1 | MTR_1g076870 | 67.910 | 134 | 37 | 1 | 128 | 255 | 2 | 135 | 3.45e-58 | 182 |
MS.gene49090.t1 | MTR_4g023570 | 37.545 | 277 | 128 | 7 | 4 | 275 | 1 | 237 | 5.05e-52 | 170 |
MS.gene49090.t1 | MTR_1g079350 | 61.314 | 137 | 40 | 3 | 1 | 128 | 1 | 133 | 3.50e-45 | 152 |
MS.gene49090.t1 | MTR_1g079130 | 45.550 | 191 | 86 | 4 | 101 | 275 | 1 | 189 | 6.30e-45 | 150 |
MS.gene49090.t1 | MTR_1g079210 | 64.228 | 123 | 42 | 1 | 129 | 249 | 7 | 129 | 9.23e-44 | 145 |
MS.gene49090.t1 | MTR_2g042540 | 66.667 | 105 | 33 | 2 | 1 | 103 | 1 | 105 | 2.99e-38 | 131 |
MS.gene49090.t1 | MTR_1g078460 | 71.264 | 87 | 25 | 0 | 1 | 87 | 64 | 150 | 8.40e-36 | 125 |
MS.gene49090.t1 | MTR_7g096310 | 56.818 | 132 | 49 | 3 | 57 | 186 | 38 | 163 | 2.01e-35 | 125 |
MS.gene49090.t1 | MTR_3g058640 | 54.464 | 112 | 39 | 1 | 128 | 239 | 7 | 106 | 1.25e-33 | 118 |
MS.gene49090.t1 | MTR_7g103380 | 26.056 | 284 | 174 | 5 | 6 | 274 | 21 | 283 | 1.03e-29 | 114 |
MS.gene49090.t1 | MTR_0113s0040 | 30.348 | 201 | 125 | 3 | 2 | 188 | 20 | 219 | 1.09e-23 | 97.8 |
MS.gene49090.t1 | MTR_1g101390 | 37.931 | 145 | 87 | 2 | 2 | 144 | 26 | 169 | 1.35e-22 | 94.7 |
MS.gene49090.t1 | MTR_1g079220 | 58.974 | 78 | 20 | 1 | 165 | 242 | 1 | 66 | 4.38e-21 | 85.1 |
MS.gene49090.t1 | MTR_4g083970 | 26.027 | 219 | 128 | 4 | 63 | 276 | 102 | 291 | 2.87e-19 | 85.9 |
MS.gene49090.t1 | MTR_0002s0020 | 29.940 | 167 | 107 | 3 | 6 | 165 | 24 | 187 | 3.84e-18 | 82.4 |
MS.gene49090.t1 | MTR_4g102770 | 33.333 | 144 | 92 | 2 | 6 | 146 | 21 | 163 | 9.95e-18 | 81.3 |
MS.gene49090.t1 | MTR_5g010800 | 30.822 | 146 | 94 | 4 | 6 | 147 | 19 | 161 | 6.27e-16 | 76.3 |
MS.gene49090.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 221 | 270 | 8 | 55 | 2.33e-15 | 69.3 |
MS.gene49090.t1 | MTR_1g079190 | 46.250 | 80 | 24 | 2 | 189 | 267 | 113 | 174 | 2.09e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49090.t1 | AT2G02360 | 43.431 | 274 | 133 | 5 | 4 | 274 | 14 | 268 | 1.03e-75 | 232 |
MS.gene49090.t1 | AT1G80110 | 42.599 | 277 | 127 | 5 | 6 | 274 | 3 | 255 | 2.29e-66 | 207 |
MS.gene49090.t1 | AT2G02340 | 42.599 | 277 | 142 | 5 | 4 | 274 | 36 | 301 | 1.37e-65 | 207 |
MS.gene49090.t1 | AT2G02240 | 42.279 | 272 | 140 | 4 | 4 | 274 | 61 | 316 | 2.18e-65 | 207 |
MS.gene49090.t1 | AT2G02250 | 40.511 | 274 | 143 | 6 | 4 | 274 | 47 | 303 | 5.84e-64 | 203 |
MS.gene49090.t1 | AT2G02230 | 37.662 | 308 | 156 | 6 | 4 | 278 | 32 | 336 | 1.55e-63 | 203 |
MS.gene49090.t1 | AT1G09155 | 41.935 | 279 | 151 | 7 | 7 | 275 | 3 | 280 | 9.56e-62 | 197 |
MS.gene49090.t1 | AT1G56250 | 42.105 | 285 | 144 | 8 | 7 | 276 | 4 | 282 | 3.81e-60 | 192 |
MS.gene49090.t1 | AT1G56240 | 41.696 | 283 | 144 | 8 | 7 | 274 | 4 | 280 | 7.39e-59 | 189 |
MS.gene49090.t1 | AT2G02350 | 37.545 | 277 | 153 | 7 | 2 | 274 | 22 | 282 | 4.60e-58 | 187 |
MS.gene49090.t1 | AT2G02310 | 35.636 | 275 | 159 | 4 | 4 | 275 | 45 | 304 | 2.19e-53 | 176 |
MS.gene49090.t1 | AT2G02320 | 38.043 | 276 | 145 | 7 | 6 | 274 | 42 | 298 | 7.59e-51 | 169 |
MS.gene49090.t1 | AT2G02300 | 35.714 | 280 | 140 | 9 | 4 | 275 | 34 | 281 | 2.74e-43 | 149 |
MS.gene49090.t1 | AT5G24560 | 42.708 | 192 | 97 | 4 | 4 | 192 | 3 | 184 | 6.44e-43 | 145 |
MS.gene49090.t1 | AT3G53000 | 27.931 | 290 | 172 | 7 | 3 | 277 | 20 | 287 | 5.16e-30 | 115 |
MS.gene49090.t1 | AT2G02350 | 33.146 | 178 | 102 | 6 | 101 | 274 | 1 | 165 | 4.84e-27 | 103 |
MS.gene49090.t1 | AT1G12710 | 26.736 | 288 | 162 | 8 | 3 | 274 | 27 | 281 | 4.29e-20 | 88.2 |
MS.gene49090.t1 | AT5G52120 | 33.117 | 154 | 94 | 3 | 1 | 146 | 18 | 170 | 1.77e-18 | 83.6 |
MS.gene49090.t1 | AT1G63090 | 29.612 | 206 | 126 | 6 | 3 | 192 | 25 | 227 | 2.07e-18 | 83.6 |
MS.gene49090.t1 | AT3G61060 | 31.206 | 141 | 94 | 2 | 6 | 144 | 27 | 166 | 2.51e-18 | 83.2 |
MS.gene49090.t1 | AT3G61060 | 29.787 | 141 | 97 | 1 | 6 | 144 | 27 | 167 | 2.14e-17 | 80.5 |
MS.gene49090.t1 | AT1G12710 | 25.581 | 301 | 191 | 8 | 3 | 274 | 27 | 323 | 6.00e-15 | 74.3 |
MS.gene49090.t1 | AT4G19840 | 28.889 | 180 | 97 | 6 | 99 | 275 | 94 | 245 | 1.90e-13 | 68.9 |
Find 79 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGATCTCTCCACATTTCT+TGG | 0.204004 | 1.3:-69356074 | MS.gene49090:CDS |
TAAGCTGCATACTGAGTATT+TGG | 0.255011 | 1.3:+69355144 | None:intergenic |
CTTGTATACAAATTGATTGA+TGG | 0.301820 | 1.3:-69355120 | MS.gene49090:CDS |
CGCAGACATGGAAGACTTTA+CGG | 0.310818 | 1.3:-69354991 | MS.gene49090:CDS |
ATGGGAGAGTTCTTCAATTC+AGG | 0.321358 | 1.3:-69354895 | MS.gene49090:CDS |
CATCATCGACGATGCCAAAA+AGG | 0.324659 | 1.3:-69356965 | MS.gene49090:intron |
TAGATCTCTCCACATTTCTT+GGG | 0.327058 | 1.3:-69356073 | MS.gene49090:CDS |
TAGCACTAAAATTGTCTGTT+TGG | 0.333924 | 1.3:-69355040 | MS.gene49090:CDS |
AGCAAATGCTCCTTCCAAAA+AGG | 0.353184 | 1.3:-69357019 | MS.gene49090:CDS |
GGACTGCTATGCCTGATTCC+AGG | 0.379956 | 1.3:-69356026 | MS.gene49090:intron |
GAGAGTCTGCCCGCGTCAAC+TGG | 0.384737 | 1.3:+69357144 | None:intergenic |
GATGAGTGTTATCGAGATAA+AGG | 0.385187 | 1.3:-69354851 | MS.gene49090:CDS |
AGACGAAGATTAGCAACTTC+GGG | 0.388577 | 1.3:+69355216 | None:intergenic |
TGAAATGCAGAGCTTTCAAT+TGG | 0.399907 | 1.3:-69356133 | MS.gene49090:intron |
CCGCCGATTCCGATGCCGTC+TGG | 0.403257 | 1.3:-69357095 | MS.gene49090:CDS |
TGGAGTTGTACGTGACAGTA+TGG | 0.415643 | 1.3:+69357164 | None:intergenic |
AAAATGGCCAACCTGGAATC+AGG | 0.422964 | 1.3:+69356015 | None:intergenic |
TGATGATAGGTCGATCAGAT+AGG | 0.426684 | 1.3:+69356983 | None:intergenic |
AAGGGGAATTTCTATCTTGA+AGG | 0.429621 | 1.3:-69354817 | MS.gene49090:CDS |
ATGATGACCGCTATTGGATC+TGG | 0.429837 | 1.3:-69356047 | MS.gene49090:CDS |
ATCTTGAAGGAATAGAAGTT+AGG | 0.437558 | 1.3:-69354804 | MS.gene49090:CDS |
TTATCTCGATAACACTCATC+TGG | 0.440534 | 1.3:+69354854 | None:intergenic |
GTTTCTTAATTGTCTACCTT+AGG | 0.443637 | 1.3:+69354781 | None:intergenic |
ATTCCAGACGGCATCGGAAT+CGG | 0.451722 | 1.3:+69357092 | None:intergenic |
CGCAGGCAGAACCGCAGACA+TGG | 0.453913 | 1.3:-69355003 | MS.gene49090:CDS |
TTGGCATCGTCGATGATGAT+AGG | 0.465612 | 1.3:+69356970 | None:intergenic |
TACAAATTGATTGATGGCTA+TGG | 0.469002 | 1.3:-69355114 | MS.gene49090:CDS |
GGGGTGATGATGACCGCTAT+TGG | 0.481778 | 1.3:-69356053 | MS.gene49090:CDS |
ACAAATTGATTGATGGCTAT+GGG | 0.489453 | 1.3:-69355113 | MS.gene49090:CDS |
ATGATAGAGTCGATGTCAGA+AGG | 0.501608 | 1.3:+69357060 | None:intergenic |
AAGACGAAGATTAGCAACTT+CGG | 0.509597 | 1.3:+69355215 | None:intergenic |
CTTCCTGTGGATTTATCTGT+CGG | 0.516064 | 1.3:-69355081 | MS.gene49090:CDS |
GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.3:+69357113 | None:intergenic |
TGATAGAGTCGATGTCAGAA+GGG | 0.519983 | 1.3:+69357061 | None:intergenic |
CGTCCTAGTGTGAGAAGTGA+TGG | 0.520284 | 1.3:-69354934 | MS.gene49090:CDS |
TTCAAGATAGAAATTCCCCT+TGG | 0.522940 | 1.3:+69354819 | None:intergenic |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 1.3:-69354913 | MS.gene49090:CDS |
AGGAATAGAAGTTAGGCCTA+AGG | 0.540733 | 1.3:-69354797 | MS.gene49090:CDS |
CATCGGAATCGGCGGCAGAA+AGG | 0.542303 | 1.3:+69357103 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.542699 | 1.3:-69354914 | MS.gene49090:CDS |
GGGTTCGAAGATTTAGCAGA+AGG | 0.547475 | 1.3:-69357198 | MS.gene49090:CDS |
GTGTGGTGGCTCGAAATTCG+TGG | 0.547967 | 1.3:-69355192 | MS.gene49090:CDS |
TGGGTTTGAGAACCTTCCTG+TGG | 0.549562 | 1.3:-69355094 | MS.gene49090:CDS |
GATGATAGGTCGATCAGATA+GGG | 0.551413 | 1.3:+69356984 | None:intergenic |
TGTGAGAAGTGATGGGTGGT+TGG | 0.556049 | 1.3:-69354926 | MS.gene49090:CDS |
AGATCTCTCCACATTTCTTG+GGG | 0.557619 | 1.3:-69356072 | MS.gene49090:CDS |
GATTTATCTGTCGGTGTCGA+AGG | 0.557631 | 1.3:-69355072 | MS.gene49090:CDS |
CTAATCTTCGTCTTGTGTGG+TGG | 0.562220 | 1.3:-69355206 | MS.gene49090:CDS |
TTGCTAATCTTCGTCTTGTG+TGG | 0.565369 | 1.3:-69355209 | MS.gene49090:CDS |
TTTCAATTGGATAGAAAGAG+TGG | 0.567809 | 1.3:-69356120 | MS.gene49090:CDS |
AGTGTTATCGAGATAAAGGC+TGG | 0.568289 | 1.3:-69354847 | MS.gene49090:CDS |
CACCCATCACTTCTCACACT+AGG | 0.570746 | 1.3:+69354931 | None:intergenic |
GAAGGAGCATTTGCTAGAGA+AGG | 0.571483 | 1.3:+69357027 | None:intergenic |
CATCATCACCCCAAGAAATG+TGG | 0.582603 | 1.3:+69356064 | None:intergenic |
TTATCTGTCGGTGTCGAAGG+TGG | 0.597798 | 1.3:-69355069 | MS.gene49090:CDS |
ATGGAAGACTTTACGGTGCG+AGG | 0.599144 | 1.3:-69354984 | MS.gene49090:CDS |
ATAAAGGCTGGTGAGACCAA+GGG | 0.599634 | 1.3:-69354835 | MS.gene49090:CDS |
GATAAAGGCTGGTGAGACCA+AGG | 0.599999 | 1.3:-69354836 | MS.gene49090:CDS |
GCGAGGTTGCATGACAGAGT+AGG | 0.609843 | 1.3:-69354967 | MS.gene49090:CDS |
TGTGGTGGCTCGAAATTCGT+GGG | 0.618223 | 1.3:-69355191 | MS.gene49090:CDS |
TGGATTCAAATGTAGAACGC+AGG | 0.621650 | 1.3:-69355020 | MS.gene49090:CDS |
CCAGACGGCATCGGAATCGG+CGG | 0.622067 | 1.3:+69357095 | None:intergenic |
AGGTTGCATGACAGAGTAGG+AGG | 0.626898 | 1.3:-69354964 | MS.gene49090:CDS |
CGTAAAGTCTTCCATGTCTG+CGG | 0.634888 | 1.3:+69354992 | None:intergenic |
ACGTACAACTCCAGTTGACG+CGG | 0.635484 | 1.3:-69357154 | MS.gene49090:CDS |
ACACCGACAGATAAATCCAC+AGG | 0.642651 | 1.3:+69355078 | None:intergenic |
ATACTGAGTATTTGGAGACA+AGG | 0.643026 | 1.3:+69355152 | None:intergenic |
AAAGTGATTCCAGACGGCAT+CGG | 0.647589 | 1.3:+69357086 | None:intergenic |
TAAAGGCTGGTGAGACCAAG+GGG | 0.647680 | 1.3:-69354834 | MS.gene49090:CDS |
GTCCTAGTGTGAGAAGTGAT+GGG | 0.659394 | 1.3:-69354933 | MS.gene49090:CDS |
AAGGAAAGTCTTGGAAACGA+CGG | 0.661166 | 1.3:+69357122 | None:intergenic |
TCACTTCTCACACTAGGACG+CGG | 0.664402 | 1.3:+69354937 | None:intergenic |
AGGGAGAAAGTGATTCCAGA+CGG | 0.665074 | 1.3:+69357080 | None:intergenic |
CGTACAACTCCAGTTGACGC+GGG | 0.681683 | 1.3:-69357153 | MS.gene49090:CDS |
CGACAGATAAATCCACAGGA+AGG | 0.695590 | 1.3:+69355082 | None:intergenic |
AGTTGTACGTGACAGTATGG+AGG | 0.696361 | 1.3:+69357167 | None:intergenic |
GACGAAGATTAGCAACTTCG+GGG | 0.697062 | 1.3:+69355217 | None:intergenic |
CTAGTGTGAGAAGTGATGGG+TGG | 0.729446 | 1.3:-69354930 | MS.gene49090:CDS |
TAGCAGTCCAGATCCAATAG+CGG | 0.737188 | 1.3:+69356040 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTAGATATATTATTAAA+TGG | - | chr1.3:69355497-69355516 | MS.gene49090:intron | 10.0% |
!! | CATTAGATATATTATTAAAT+GGG | - | chr1.3:69355498-69355517 | MS.gene49090:intron | 10.0% |
!! | GTACATTTATTATTATTATT+AGG | - | chr1.3:69355238-69355257 | MS.gene49090:intron | 10.0% |
!!! | AAATATTTTCATTTAACTTT+AGG | + | chr1.3:69356277-69356296 | None:intergenic | 10.0% |
!!! | ATTTATTTGATTAATTTGCA+AGG | + | chr1.3:69355527-69355546 | None:intergenic | 15.0% |
!!! | TTTATTTGATTAATTTGCAA+GGG | + | chr1.3:69355526-69355545 | None:intergenic | 15.0% |
!! | AAAAAAAAGTTATTAGACAG+TGG | + | chr1.3:69356423-69356442 | None:intergenic | 20.0% |
!! | AAACTCAGATATGAAATATA+AGG | + | chr1.3:69356092-69356111 | None:intergenic | 20.0% |
!! | AACAATGTTAAAACAAACAA+GGG | + | chr1.3:69356034-69356053 | None:intergenic | 20.0% |
!! | AGATATGAAATATAAGGAAA+TGG | + | chr1.3:69356086-69356105 | None:intergenic | 20.0% |
!! | ATTGATTGCTGTAAAATATA+TGG | - | chr1.3:69355781-69355800 | MS.gene49090:intron | 20.0% |
!! | TGAAATAATTTAGTTATCGT+TGG | - | chr1.3:69356500-69356519 | MS.gene49090:intron | 20.0% |
!! | TTACAACAGATAAATACTAA+GGG | + | chr1.3:69356195-69356214 | None:intergenic | 20.0% |
!! | TTAGTATTTATCTGTTGTAA+CGG | - | chr1.3:69356195-69356214 | MS.gene49090:intron | 20.0% |
!! | TTATGCACTGTAAAATATAT+TGG | - | chr1.3:69355703-69355722 | MS.gene49090:intron | 20.0% |
!!! | ACTGAGAATTTTATCATAAT+CGG | - | chr1.3:69356470-69356489 | MS.gene49090:intron | 20.0% |
!!! | AGTTGTTTCAAAGTTTTTTT+TGG | - | chr1.3:69356557-69356576 | MS.gene49090:intron | 20.0% |
!!! | ATTATACTTATTTTACTTGC+AGG | + | chr1.3:69355589-69355608 | None:intergenic | 20.0% |
! | AAAAACCAATAAAAATGAGG+GGG | + | chr1.3:69356002-69356021 | None:intergenic | 25.0% |
! | ATTGATTGTTCTTTCATGTT+AGG | - | chr1.3:69355115-69355134 | MS.gene49090:CDS | 25.0% |
! | CAAAAGTCCTTAATTCATAT+TGG | - | chr1.3:69355652-69355671 | MS.gene49090:intron | 25.0% |
! | CTTGTATACAAATTGATTGA+TGG | - | chr1.3:69356870-69356889 | MS.gene49090:intron | 25.0% |
! | GAAAAACCAATAAAAATGAG+GGG | + | chr1.3:69356003-69356022 | None:intergenic | 25.0% |
! | GAACAATGTTAAAACAAACA+AGG | + | chr1.3:69356035-69356054 | None:intergenic | 25.0% |
! | GAATTGAGAAAAAGTTGAAA+AGG | + | chr1.3:69356714-69356733 | None:intergenic | 25.0% |
! | GCACAAACAAATAAACAAAA+TGG | + | chr1.3:69355553-69355572 | None:intergenic | 25.0% |
! | GGAAAAACCAATAAAAATGA+GGG | + | chr1.3:69356004-69356023 | None:intergenic | 25.0% |
! | GTTACAACAGATAAATACTA+AGG | + | chr1.3:69356196-69356215 | None:intergenic | 25.0% |
! | TGGAAAAACCAATAAAAATG+AGG | + | chr1.3:69356005-69356024 | None:intergenic | 25.0% |
! | TTAGATGCCAATATGAATTA+AGG | + | chr1.3:69355662-69355681 | None:intergenic | 25.0% |
! | TTGATTGTTCTTTCATGTTA+GGG | - | chr1.3:69355116-69355135 | MS.gene49090:CDS | 25.0% |
!! | AATATGTGATGATACCTTTT+TGG | + | chr1.3:69355042-69355061 | None:intergenic | 25.0% |
!! | GTTATTACTCTTTTTGATGT+TGG | - | chr1.3:69356595-69356614 | MS.gene49090:intron | 25.0% |
!! | TTGAATGTAATCAAAAGTGT+CGG | + | chr1.3:69355396-69355415 | None:intergenic | 25.0% |
AGGATTCATAACATCACAAA+TGG | + | chr1.3:69356694-69356713 | None:intergenic | 30.0% | |
ATAAAAATGAGGGGGAAAAA+TGG | + | chr1.3:69355994-69356013 | None:intergenic | 30.0% | |
ATCTTGAAGGAATAGAAGTT+AGG | - | chr1.3:69357186-69357205 | MS.gene49090:CDS | 30.0% | |
GATGAAAAACAATGAGAAGT+TGG | - | chr1.3:69356245-69356264 | MS.gene49090:intron | 30.0% | |
TAGCACTAAAATTGTCTGTT+TGG | - | chr1.3:69356950-69356969 | MS.gene49090:intron | 30.0% | |
TGCATTTCAATATACCCAAA+AGG | + | chr1.3:69355846-69355865 | None:intergenic | 30.0% | |
TTTCAATTGGATAGAAAGAG+TGG | - | chr1.3:69355870-69355889 | MS.gene49090:intron | 30.0% | |
! | AATGCTAATCATAAGCCTTT+TGG | - | chr1.3:69355828-69355847 | MS.gene49090:intron | 30.0% |
! | ACAAATTGATTGATGGCTAT+GGG | - | chr1.3:69356877-69356896 | MS.gene49090:intron | 30.0% |
! | ATGCTAATCATAAGCCTTTT+GGG | - | chr1.3:69355829-69355848 | MS.gene49090:intron | 30.0% |
! | TACAAATTGATTGATGGCTA+TGG | - | chr1.3:69356876-69356895 | MS.gene49090:intron | 30.0% |
! | TCATCATCGTCTGAAATATT+AGG | - | chr1.3:69355062-69355081 | MS.gene49090:CDS | 30.0% |
!! | ACAAGAAGTATTCACTTAGA+AGG | + | chr1.3:69356335-69356354 | None:intergenic | 30.0% |
!! | AGACAATTTTAGTGCTACTA+TGG | + | chr1.3:69356947-69356966 | None:intergenic | 30.0% |
!! | TTTTTCCCCCTCATTTTTAT+TGG | - | chr1.3:69355994-69356013 | MS.gene49090:intron | 30.0% |
AAAACAAACAAGGGAGAAGT+TGG | + | chr1.3:69356025-69356044 | None:intergenic | 35.0% | |
AACCTCAATAACAGTGATGT+TGG | - | chr1.3:69356396-69356415 | MS.gene49090:intron | 35.0% | |
AAGACGAAGATTAGCAACTT+CGG | + | chr1.3:69356778-69356797 | None:intergenic | 35.0% | |
AAGGGGAATTTCTATCTTGA+AGG | - | chr1.3:69357173-69357192 | MS.gene49090:CDS | 35.0% | |
AGATGAAAGTTTCCTTGATG+AGG | + | chr1.3:69356138-69356157 | None:intergenic | 35.0% | |
ATACTGAGTATTTGGAGACA+AGG | + | chr1.3:69356841-69356860 | None:intergenic | 35.0% | |
ATGAAAGTTTCCTTGATGAG+GGG | + | chr1.3:69356136-69356155 | None:intergenic | 35.0% | |
ATGATGATTGAAAACGTGTC+TGG | - | chr1.3:69355354-69355373 | MS.gene49090:intron | 35.0% | |
CATTGTTCTTTCTCCTTTCT+CGG | - | chr1.3:69356047-69356066 | MS.gene49090:CDS | 35.0% | |
CTTTACAAACCAAACCAACA+TGG | + | chr1.3:69355297-69355316 | None:intergenic | 35.0% | |
GATGAAAGTTTCCTTGATGA+GGG | + | chr1.3:69356137-69356156 | None:intergenic | 35.0% | |
GATGAGTGTTATCGAGATAA+AGG | - | chr1.3:69357139-69357158 | MS.gene49090:CDS | 35.0% | |
TAAGCTGCATACTGAGTATT+TGG | + | chr1.3:69356849-69356868 | None:intergenic | 35.0% | |
TAGATCTCTCCACATTTCTT+GGG | - | chr1.3:69355917-69355936 | MS.gene49090:intron | 35.0% | |
TCAGGTGTATGGTTAACTTT+GGG | + | chr1.3:69356371-69356390 | None:intergenic | 35.0% | |
TGAAATGCAGAGCTTTCAAT+TGG | - | chr1.3:69355857-69355876 | MS.gene49090:intron | 35.0% | |
TGTTATTGAGGTTCAGATTC+AGG | + | chr1.3:69356389-69356408 | None:intergenic | 35.0% | |
TTATCTCGATAACACTCATC+TGG | + | chr1.3:69357139-69357158 | None:intergenic | 35.0% | |
TTCAAGATAGAAATTCCCCT+TGG | + | chr1.3:69357174-69357193 | None:intergenic | 35.0% | |
TTCAGGTGTATGGTTAACTT+TGG | + | chr1.3:69356372-69356391 | None:intergenic | 35.0% | |
! | AATCTCTGCAACTTTTGTGT+TGG | - | chr1.3:69356743-69356762 | MS.gene49090:intron | 35.0% |
! | TCTGGACTTCTTCATTTTCA+AGG | + | chr1.3:69357121-69357140 | None:intergenic | 35.0% |
AAGGAAAGTCTTGGAAACGA+CGG | + | chr1.3:69354871-69354890 | None:intergenic | 40.0% | |
AATGAACAATTCGCCGAGAA+AGG | + | chr1.3:69356063-69356082 | None:intergenic | 40.0% | |
AGACGAAGATTAGCAACTTC+GGG | + | chr1.3:69356777-69356796 | None:intergenic | 40.0% | |
AGATCTCTCCACATTTCTTG+GGG | - | chr1.3:69355918-69355937 | MS.gene49090:intron | 40.0% | |
AGCAAATGCTCCTTCCAAAA+AGG | - | chr1.3:69354971-69354990 | MS.gene49090:CDS | 40.0% | |
AGGAATAGAAGTTAGGCCTA+AGG | - | chr1.3:69357193-69357212 | MS.gene49090:CDS | 40.0% | |
AGGGGAATAGGATCAATCAA+CGG | + | chr1.3:69356118-69356137 | None:intergenic | 40.0% | |
AGTGTTATCGAGATAAAGGC+TGG | - | chr1.3:69357143-69357162 | MS.gene49090:CDS | 40.0% | |
ATGATAGAGTCGATGTCAGA+AGG | + | chr1.3:69354933-69354952 | None:intergenic | 40.0% | |
ATGGGAGAGTTCTTCAATTC+AGG | - | chr1.3:69357095-69357114 | MS.gene49090:CDS | 40.0% | |
ATGTTTGTGTGTGTCTGTGT+CGG | - | chr1.3:69355465-69355484 | MS.gene49090:intron | 40.0% | |
CTAGATCTCTCCACATTTCT+TGG | - | chr1.3:69355916-69355935 | MS.gene49090:intron | 40.0% | |
CTGTTGTAACGGTAATCAAC+TGG | - | chr1.3:69356206-69356225 | MS.gene49090:intron | 40.0% | |
CTTCCTGTGGATTTATCTGT+CGG | - | chr1.3:69356909-69356928 | MS.gene49090:intron | 40.0% | |
GACCAACATCACTGTTATTG+AGG | + | chr1.3:69356401-69356420 | None:intergenic | 40.0% | |
GATGATAGGTCGATCAGATA+GGG | + | chr1.3:69355009-69355028 | None:intergenic | 40.0% | |
TACAAACCAAACCAACATGG+CGG | + | chr1.3:69355294-69355313 | None:intergenic | 40.0% | |
TGATAGAGTCGATGTCAGAA+GGG | + | chr1.3:69354932-69354951 | None:intergenic | 40.0% | |
TGATGATAGGTCGATCAGAT+AGG | + | chr1.3:69355010-69355029 | None:intergenic | 40.0% | |
TGGATTCAAATGTAGAACGC+AGG | - | chr1.3:69356970-69356989 | MS.gene49090:CDS | 40.0% | |
TTGCTAATCTTCGTCTTGTG+TGG | - | chr1.3:69356781-69356800 | MS.gene49090:intron | 40.0% | |
! | AGATAGAGAGCCTTTTTGGA+AGG | + | chr1.3:69354984-69355003 | None:intergenic | 40.0% |
!! | CATTCAGAAGTGAAAGTGCT+AGG | + | chr1.3:69355337-69355356 | None:intergenic | 40.0% |
AAAATGGCCAACCTGGAATC+AGG | + | chr1.3:69355978-69355997 | None:intergenic | 45.0% | |
AAACCAACATGGCGGTTCAA+CGG | + | chr1.3:69355286-69355305 | None:intergenic | 45.0% | |
AAAGTGATTCCAGACGGCAT+CGG | + | chr1.3:69354907-69354926 | None:intergenic | 45.0% | |
ACACCGACAGATAAATCCAC+AGG | + | chr1.3:69356915-69356934 | None:intergenic | 45.0% | |
AGGGAGAAAGTGATTCCAGA+CGG | + | chr1.3:69354913-69354932 | None:intergenic | 45.0% | |
AGTTGTACGTGACAGTATGG+AGG | + | chr1.3:69354826-69354845 | None:intergenic | 45.0% | |
ATAAAGGCTGGTGAGACCAA+GGG | - | chr1.3:69357155-69357174 | MS.gene49090:CDS | 45.0% | |
ATGATGACCGCTATTGGATC+TGG | - | chr1.3:69355943-69355962 | MS.gene49090:intron | 45.0% | |
CATCATCACCCCAAGAAATG+TGG | + | chr1.3:69355929-69355948 | None:intergenic | 45.0% | |
CATCATCGACGATGCCAAAA+AGG | - | chr1.3:69355025-69355044 | MS.gene49090:CDS | 45.0% | |
CGACAGATAAATCCACAGGA+AGG | + | chr1.3:69356911-69356930 | None:intergenic | 45.0% | |
CGCAGACATGGAAGACTTTA+CGG | - | chr1.3:69356999-69357018 | MS.gene49090:CDS | 45.0% | |
CGTAAAGTCTTCCATGTCTG+CGG | + | chr1.3:69357001-69357020 | None:intergenic | 45.0% | |
CTAATCTTCGTCTTGTGTGG+TGG | - | chr1.3:69356784-69356803 | MS.gene49090:intron | 45.0% | |
GACACAGACACACACAAACA+TGG | + | chr1.3:69355466-69355485 | None:intergenic | 45.0% | |
GACGAAGATTAGCAACTTCG+GGG | + | chr1.3:69356776-69356795 | None:intergenic | 45.0% | |
GAGGTTCAGATTCAGGTGTA+TGG | + | chr1.3:69356382-69356401 | None:intergenic | 45.0% | |
GCAAGATGAACGACAATGAG+AGG | - | chr1.3:69356160-69356179 | MS.gene49090:intron | 45.0% | |
GGGTTCGAAGATTTAGCAGA+AGG | - | chr1.3:69354792-69354811 | MS.gene49090:CDS | 45.0% | |
GTCCTAGTGTGAGAAGTGAT+GGG | - | chr1.3:69357057-69357076 | MS.gene49090:CDS | 45.0% | |
GTTTCCTTGATGAGGGGAAT+AGG | + | chr1.3:69356130-69356149 | None:intergenic | 45.0% | |
TAGCAGTCCAGATCCAATAG+CGG | + | chr1.3:69355953-69355972 | None:intergenic | 45.0% | |
TGATCCTATTCCCCTCATCA+AGG | - | chr1.3:69356123-69356142 | MS.gene49090:CDS | 45.0% | |
TGGAGTTGTACGTGACAGTA+TGG | + | chr1.3:69354829-69354848 | None:intergenic | 45.0% | |
TTGGCATCGTCGATGATGAT+AGG | + | chr1.3:69355023-69355042 | None:intergenic | 45.0% | |
! | CTGCAACTTTTGTGTTGGAC+AGG | - | chr1.3:69356748-69356767 | MS.gene49090:intron | 45.0% |
! | GGCAAGATAGAGAGCCTTTT+TGG | + | chr1.3:69354988-69355007 | None:intergenic | 45.0% |
!! | AAAGTGTCGGTGACAACAGT+CGG | + | chr1.3:69355383-69355402 | None:intergenic | 45.0% |
!! | GAAGGAGCATTTGCTAGAGA+AGG | + | chr1.3:69354966-69354985 | None:intergenic | 45.0% |
!! | GATTTATCTGTCGGTGTCGA+AGG | - | chr1.3:69356918-69356937 | MS.gene49090:intron | 45.0% |
!! | TACATTTATTATTATTATTA+GGG | - | chr1.3:69355239-69355258 | MS.gene49090:intron | 5.0% |
ACGTACAACTCCAGTTGACG+CGG | - | chr1.3:69354836-69354855 | MS.gene49090:CDS | 50.0% | |
AGGTTGCATGACAGAGTAGG+AGG | - | chr1.3:69357026-69357045 | MS.gene49090:CDS | 50.0% | |
ATGGAAGACTTTACGGTGCG+AGG | - | chr1.3:69357006-69357025 | MS.gene49090:CDS | 50.0% | |
ATGGCGGTTCAACGGAACAT+CGG | + | chr1.3:69355278-69355297 | None:intergenic | 50.0% | |
CACCCATCACTTCTCACACT+AGG | + | chr1.3:69357062-69357081 | None:intergenic | 50.0% | |
CGTCCTAGTGTGAGAAGTGA+TGG | - | chr1.3:69357056-69357075 | MS.gene49090:CDS | 50.0% | |
GATAAAGGCTGGTGAGACCA+AGG | - | chr1.3:69357154-69357173 | MS.gene49090:CDS | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | - | chr1.3:69357077-69357096 | MS.gene49090:CDS | 50.0% | |
TAAAGGCTGGTGAGACCAAG+GGG | - | chr1.3:69357156-69357175 | MS.gene49090:CDS | 50.0% | |
TCACTTCTCACACTAGGACG+CGG | + | chr1.3:69357056-69357075 | None:intergenic | 50.0% | |
TGCTATGCCTGATTCCAGGT+TGG | - | chr1.3:69355968-69355987 | MS.gene49090:intron | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | - | chr1.3:69357076-69357095 | MS.gene49090:CDS | 50.0% | |
TGGGTTTGAGAACCTTCCTG+TGG | - | chr1.3:69356896-69356915 | MS.gene49090:intron | 50.0% | |
TGTGGTGGCTCGAAATTCGT+GGG | - | chr1.3:69356799-69356818 | MS.gene49090:intron | 50.0% | |
! | ATTCCAGACGGCATCGGAAT+CGG | + | chr1.3:69354901-69354920 | None:intergenic | 50.0% |
! | CTAGTGTGAGAAGTGATGGG+TGG | - | chr1.3:69357060-69357079 | MS.gene49090:CDS | 50.0% |
! | GTTGAACCGCCATGTTGGTT+TGG | - | chr1.3:69355285-69355304 | MS.gene49090:intron | 50.0% |
!! | TGTGAGAAGTGATGGGTGGT+TGG | - | chr1.3:69357064-69357083 | MS.gene49090:CDS | 50.0% |
!! | TTATCTGTCGGTGTCGAAGG+TGG | - | chr1.3:69356921-69356940 | MS.gene49090:intron | 50.0% |
AGGGGGAAAAATGGCCAACC+TGG | + | chr1.3:69355985-69356004 | None:intergenic | 55.0% | |
CGTACAACTCCAGTTGACGC+GGG | - | chr1.3:69354837-69354856 | MS.gene49090:CDS | 55.0% | |
GCGAGGTTGCATGACAGAGT+AGG | - | chr1.3:69357023-69357042 | MS.gene49090:CDS | 55.0% | |
GGACTGCTATGCCTGATTCC+AGG | - | chr1.3:69355964-69355983 | MS.gene49090:intron | 55.0% | |
GGCGGCAGAAAGGAAAGTCT+TGG | + | chr1.3:69354880-69354899 | None:intergenic | 55.0% | |
GTGTGGTGGCTCGAAATTCG+TGG | - | chr1.3:69356798-69356817 | MS.gene49090:intron | 55.0% | |
GTTCCGTTGAACCGCCATGT+TGG | - | chr1.3:69355280-69355299 | MS.gene49090:intron | 55.0% | |
! | GGGGTGATGATGACCGCTAT+TGG | - | chr1.3:69355937-69355956 | MS.gene49090:intron | 55.0% |
CATCGGAATCGGCGGCAGAA+AGG | + | chr1.3:69354890-69354909 | None:intergenic | 60.0% | |
CGCAGGCAGAACCGCAGACA+TGG | - | chr1.3:69356987-69357006 | MS.gene49090:CDS | 65.0% | |
GAGAGTCTGCCCGCGTCAAC+TGG | + | chr1.3:69354849-69354868 | None:intergenic | 65.0% | |
! | CCAGACGGCATCGGAATCGG+CGG | + | chr1.3:69354898-69354917 | None:intergenic | 65.0% |
!! | CCGCCGATTCCGATGCCGTC+TGG | - | chr1.3:69354895-69354914 | MS.gene49090:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 69354786 | 69357226 | 69354786 | ID=MS.gene49090 |
chr1.3 | mRNA | 69354786 | 69357226 | 69354786 | ID=MS.gene49090.t1;Parent=MS.gene49090 |
chr1.3 | exon | 69356966 | 69357226 | 69356966 | ID=MS.gene49090.t1.exon1;Parent=MS.gene49090.t1 |
chr1.3 | CDS | 69356966 | 69357226 | 69356966 | ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1 |
chr1.3 | exon | 69356027 | 69356145 | 69356027 | ID=MS.gene49090.t1.exon2;Parent=MS.gene49090.t1 |
chr1.3 | CDS | 69356027 | 69356145 | 69356027 | ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1 |
chr1.3 | exon | 69354786 | 69355242 | 69354786 | ID=MS.gene49090.t1.exon3;Parent=MS.gene49090.t1 |
chr1.3 | CDS | 69354786 | 69355242 | 69354786 | ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1 |
Gene Sequence |
Protein sequence |