AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49090.t1 MTR_1g100597 93.525 278 15 2 1 278 1 275 0.0 527
MS.gene49090.t1 MTR_1g079370 72.727 275 65 1 1 275 1 265 3.35e-144 405
MS.gene49090.t1 MTR_1g079180 74.101 278 56 4 1 275 1 265 9.46e-143 402
MS.gene49090.t1 MTR_1g079230 70.070 284 71 4 1 278 1 276 1.53e-139 394
MS.gene49090.t1 MTR_1g079260 70.251 279 78 2 1 278 1 275 1.68e-139 394
MS.gene49090.t1 MTR_1g079460 70.463 281 68 2 1 278 1 269 2.13e-138 391
MS.gene49090.t1 MTR_1g079200 71.071 280 60 4 1 275 1 264 7.09e-135 382
MS.gene49090.t1 MTR_1g100613 80.000 240 47 1 20 258 5 244 8.88e-135 381
MS.gene49090.t1 MTR_1g079850 69.366 284 81 4 1 278 1 284 1.89e-132 376
MS.gene49090.t1 MTR_1g079380 71.583 278 69 1 1 278 1 268 7.79e-132 375
MS.gene49090.t1 MTR_3g006850 64.262 305 78 7 3 278 16 318 5.30e-121 348
MS.gene49090.t1 MTR_1g079250 66.316 285 85 6 1 278 1 281 1.57e-115 334
MS.gene49090.t1 MTR_1g026510 61.034 290 97 7 1 278 1 286 1.65e-112 327
MS.gene49090.t1 MTR_3g452600 61.455 275 92 2 4 278 10 270 1.88e-111 323
MS.gene49090.t1 MTR_3g450990 55.290 293 97 4 4 278 10 286 4.77e-99 291
MS.gene49090.t1 MTR_1g079410 55.596 277 105 4 5 275 9 273 6.95e-99 291
MS.gene49090.t1 MTR_2g079100 58.088 272 94 4 3 272 8 261 1.41e-96 285
MS.gene49090.t1 MTR_1g079350 55.944 286 104 8 1 275 1 275 5.06e-94 278
MS.gene49090.t1 MTR_1g079140 48.322 298 130 5 4 278 13 309 2.21e-85 258
MS.gene49090.t1 MTR_1g079340 52.508 299 105 8 1 275 40 325 3.78e-85 258
MS.gene49090.t1 MTR_7g096300 59.004 261 82 6 1 255 1 242 4.22e-83 265
MS.gene49090.t1 MTR_1g079400 47.163 282 123 3 5 275 13 279 8.23e-82 248
MS.gene49090.t1 MTR_1g078470 59.896 192 62 3 84 275 8 184 3.61e-72 219
MS.gene49090.t1 MTR_7g112550 45.486 288 134 10 2 275 5 283 6.51e-72 223
MS.gene49090.t1 MTR_1g083580 40.288 278 160 4 2 275 6 281 6.69e-66 207
MS.gene49090.t1 MTR_1g079240 58.201 189 58 4 87 275 12 179 3.87e-61 191
MS.gene49090.t1 MTR_7g112560 39.855 276 145 8 4 276 1 258 5.66e-60 191
MS.gene49090.t1 MTR_1g076870 67.910 134 37 1 128 255 2 135 3.45e-58 182
MS.gene49090.t1 MTR_4g023570 37.545 277 128 7 4 275 1 237 5.05e-52 170
MS.gene49090.t1 MTR_1g079350 61.314 137 40 3 1 128 1 133 3.50e-45 152
MS.gene49090.t1 MTR_1g079130 45.550 191 86 4 101 275 1 189 6.30e-45 150
MS.gene49090.t1 MTR_1g079210 64.228 123 42 1 129 249 7 129 9.23e-44 145
MS.gene49090.t1 MTR_2g042540 66.667 105 33 2 1 103 1 105 2.99e-38 131
MS.gene49090.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 8.40e-36 125
MS.gene49090.t1 MTR_7g096310 56.818 132 49 3 57 186 38 163 2.01e-35 125
MS.gene49090.t1 MTR_3g058640 54.464 112 39 1 128 239 7 106 1.25e-33 118
MS.gene49090.t1 MTR_7g103380 26.056 284 174 5 6 274 21 283 1.03e-29 114
MS.gene49090.t1 MTR_0113s0040 30.348 201 125 3 2 188 20 219 1.09e-23 97.8
MS.gene49090.t1 MTR_1g101390 37.931 145 87 2 2 144 26 169 1.35e-22 94.7
MS.gene49090.t1 MTR_1g079220 58.974 78 20 1 165 242 1 66 4.38e-21 85.1
MS.gene49090.t1 MTR_4g083970 26.027 219 128 4 63 276 102 291 2.87e-19 85.9
MS.gene49090.t1 MTR_0002s0020 29.940 167 107 3 6 165 24 187 3.84e-18 82.4
MS.gene49090.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 9.95e-18 81.3
MS.gene49090.t1 MTR_5g010800 30.822 146 94 4 6 147 19 161 6.27e-16 76.3
MS.gene49090.t1 MTR_1g079390 72.000 50 12 2 221 270 8 55 2.33e-15 69.3
MS.gene49090.t1 MTR_1g079190 46.250 80 24 2 189 267 113 174 2.09e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49090.t1 AT2G02360 43.431 274 133 5 4 274 14 268 1.03e-75 232
MS.gene49090.t1 AT1G80110 42.599 277 127 5 6 274 3 255 2.29e-66 207
MS.gene49090.t1 AT2G02340 42.599 277 142 5 4 274 36 301 1.37e-65 207
MS.gene49090.t1 AT2G02240 42.279 272 140 4 4 274 61 316 2.18e-65 207
MS.gene49090.t1 AT2G02250 40.511 274 143 6 4 274 47 303 5.84e-64 203
MS.gene49090.t1 AT2G02230 37.662 308 156 6 4 278 32 336 1.55e-63 203
MS.gene49090.t1 AT1G09155 41.935 279 151 7 7 275 3 280 9.56e-62 197
MS.gene49090.t1 AT1G56250 42.105 285 144 8 7 276 4 282 3.81e-60 192
MS.gene49090.t1 AT1G56240 41.696 283 144 8 7 274 4 280 7.39e-59 189
MS.gene49090.t1 AT2G02350 37.545 277 153 7 2 274 22 282 4.60e-58 187
MS.gene49090.t1 AT2G02310 35.636 275 159 4 4 275 45 304 2.19e-53 176
MS.gene49090.t1 AT2G02320 38.043 276 145 7 6 274 42 298 7.59e-51 169
MS.gene49090.t1 AT2G02300 35.714 280 140 9 4 275 34 281 2.74e-43 149
MS.gene49090.t1 AT5G24560 42.708 192 97 4 4 192 3 184 6.44e-43 145
MS.gene49090.t1 AT3G53000 27.931 290 172 7 3 277 20 287 5.16e-30 115
MS.gene49090.t1 AT2G02350 33.146 178 102 6 101 274 1 165 4.84e-27 103
MS.gene49090.t1 AT1G12710 26.736 288 162 8 3 274 27 281 4.29e-20 88.2
MS.gene49090.t1 AT5G52120 33.117 154 94 3 1 146 18 170 1.77e-18 83.6
MS.gene49090.t1 AT1G63090 29.612 206 126 6 3 192 25 227 2.07e-18 83.6
MS.gene49090.t1 AT3G61060 31.206 141 94 2 6 144 27 166 2.51e-18 83.2
MS.gene49090.t1 AT3G61060 29.787 141 97 1 6 144 27 167 2.14e-17 80.5
MS.gene49090.t1 AT1G12710 25.581 301 191 8 3 274 27 323 6.00e-15 74.3
MS.gene49090.t1 AT4G19840 28.889 180 97 6 99 275 94 245 1.90e-13 68.9

Find 79 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATCTCTCCACATTTCT+TGG 0.204004 1.3:-69356074 MS.gene49090:CDS
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.3:+69355144 None:intergenic
CTTGTATACAAATTGATTGA+TGG 0.301820 1.3:-69355120 MS.gene49090:CDS
CGCAGACATGGAAGACTTTA+CGG 0.310818 1.3:-69354991 MS.gene49090:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.3:-69354895 MS.gene49090:CDS
CATCATCGACGATGCCAAAA+AGG 0.324659 1.3:-69356965 MS.gene49090:intron
TAGATCTCTCCACATTTCTT+GGG 0.327058 1.3:-69356073 MS.gene49090:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.333924 1.3:-69355040 MS.gene49090:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.3:-69357019 MS.gene49090:CDS
GGACTGCTATGCCTGATTCC+AGG 0.379956 1.3:-69356026 MS.gene49090:intron
GAGAGTCTGCCCGCGTCAAC+TGG 0.384737 1.3:+69357144 None:intergenic
GATGAGTGTTATCGAGATAA+AGG 0.385187 1.3:-69354851 MS.gene49090:CDS
AGACGAAGATTAGCAACTTC+GGG 0.388577 1.3:+69355216 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.3:-69356133 MS.gene49090:intron
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.3:-69357095 MS.gene49090:CDS
TGGAGTTGTACGTGACAGTA+TGG 0.415643 1.3:+69357164 None:intergenic
AAAATGGCCAACCTGGAATC+AGG 0.422964 1.3:+69356015 None:intergenic
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.3:+69356983 None:intergenic
AAGGGGAATTTCTATCTTGA+AGG 0.429621 1.3:-69354817 MS.gene49090:CDS
ATGATGACCGCTATTGGATC+TGG 0.429837 1.3:-69356047 MS.gene49090:CDS
ATCTTGAAGGAATAGAAGTT+AGG 0.437558 1.3:-69354804 MS.gene49090:CDS
TTATCTCGATAACACTCATC+TGG 0.440534 1.3:+69354854 None:intergenic
GTTTCTTAATTGTCTACCTT+AGG 0.443637 1.3:+69354781 None:intergenic
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.3:+69357092 None:intergenic
CGCAGGCAGAACCGCAGACA+TGG 0.453913 1.3:-69355003 MS.gene49090:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.3:+69356970 None:intergenic
TACAAATTGATTGATGGCTA+TGG 0.469002 1.3:-69355114 MS.gene49090:CDS
GGGGTGATGATGACCGCTAT+TGG 0.481778 1.3:-69356053 MS.gene49090:CDS
ACAAATTGATTGATGGCTAT+GGG 0.489453 1.3:-69355113 MS.gene49090:CDS
ATGATAGAGTCGATGTCAGA+AGG 0.501608 1.3:+69357060 None:intergenic
AAGACGAAGATTAGCAACTT+CGG 0.509597 1.3:+69355215 None:intergenic
CTTCCTGTGGATTTATCTGT+CGG 0.516064 1.3:-69355081 MS.gene49090:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.3:+69357113 None:intergenic
TGATAGAGTCGATGTCAGAA+GGG 0.519983 1.3:+69357061 None:intergenic
CGTCCTAGTGTGAGAAGTGA+TGG 0.520284 1.3:-69354934 MS.gene49090:CDS
TTCAAGATAGAAATTCCCCT+TGG 0.522940 1.3:+69354819 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.3:-69354913 MS.gene49090:CDS
AGGAATAGAAGTTAGGCCTA+AGG 0.540733 1.3:-69354797 MS.gene49090:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.3:+69357103 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.3:-69354914 MS.gene49090:CDS
GGGTTCGAAGATTTAGCAGA+AGG 0.547475 1.3:-69357198 MS.gene49090:CDS
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.3:-69355192 MS.gene49090:CDS
TGGGTTTGAGAACCTTCCTG+TGG 0.549562 1.3:-69355094 MS.gene49090:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.3:+69356984 None:intergenic
TGTGAGAAGTGATGGGTGGT+TGG 0.556049 1.3:-69354926 MS.gene49090:CDS
AGATCTCTCCACATTTCTTG+GGG 0.557619 1.3:-69356072 MS.gene49090:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.557631 1.3:-69355072 MS.gene49090:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.3:-69355206 MS.gene49090:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.3:-69355209 MS.gene49090:CDS
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.3:-69356120 MS.gene49090:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.568289 1.3:-69354847 MS.gene49090:CDS
CACCCATCACTTCTCACACT+AGG 0.570746 1.3:+69354931 None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.3:+69357027 None:intergenic
CATCATCACCCCAAGAAATG+TGG 0.582603 1.3:+69356064 None:intergenic
TTATCTGTCGGTGTCGAAGG+TGG 0.597798 1.3:-69355069 MS.gene49090:CDS
ATGGAAGACTTTACGGTGCG+AGG 0.599144 1.3:-69354984 MS.gene49090:CDS
ATAAAGGCTGGTGAGACCAA+GGG 0.599634 1.3:-69354835 MS.gene49090:CDS
GATAAAGGCTGGTGAGACCA+AGG 0.599999 1.3:-69354836 MS.gene49090:CDS
GCGAGGTTGCATGACAGAGT+AGG 0.609843 1.3:-69354967 MS.gene49090:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.3:-69355191 MS.gene49090:CDS
TGGATTCAAATGTAGAACGC+AGG 0.621650 1.3:-69355020 MS.gene49090:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.3:+69357095 None:intergenic
AGGTTGCATGACAGAGTAGG+AGG 0.626898 1.3:-69354964 MS.gene49090:CDS
CGTAAAGTCTTCCATGTCTG+CGG 0.634888 1.3:+69354992 None:intergenic
ACGTACAACTCCAGTTGACG+CGG 0.635484 1.3:-69357154 MS.gene49090:CDS
ACACCGACAGATAAATCCAC+AGG 0.642651 1.3:+69355078 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.3:+69355152 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.3:+69357086 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.3:-69354834 MS.gene49090:CDS
GTCCTAGTGTGAGAAGTGAT+GGG 0.659394 1.3:-69354933 MS.gene49090:CDS
AAGGAAAGTCTTGGAAACGA+CGG 0.661166 1.3:+69357122 None:intergenic
TCACTTCTCACACTAGGACG+CGG 0.664402 1.3:+69354937 None:intergenic
AGGGAGAAAGTGATTCCAGA+CGG 0.665074 1.3:+69357080 None:intergenic
CGTACAACTCCAGTTGACGC+GGG 0.681683 1.3:-69357153 MS.gene49090:CDS
CGACAGATAAATCCACAGGA+AGG 0.695590 1.3:+69355082 None:intergenic
AGTTGTACGTGACAGTATGG+AGG 0.696361 1.3:+69357167 None:intergenic
GACGAAGATTAGCAACTTCG+GGG 0.697062 1.3:+69355217 None:intergenic
CTAGTGTGAGAAGTGATGGG+TGG 0.729446 1.3:-69354930 MS.gene49090:CDS
TAGCAGTCCAGATCCAATAG+CGG 0.737188 1.3:+69356040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTAGATATATTATTAAA+TGG - chr1.3:69355497-69355516 MS.gene49090:intron 10.0%
!! CATTAGATATATTATTAAAT+GGG - chr1.3:69355498-69355517 MS.gene49090:intron 10.0%
!! GTACATTTATTATTATTATT+AGG - chr1.3:69355238-69355257 MS.gene49090:intron 10.0%
!!! AAATATTTTCATTTAACTTT+AGG + chr1.3:69356277-69356296 None:intergenic 10.0%
!!! ATTTATTTGATTAATTTGCA+AGG + chr1.3:69355527-69355546 None:intergenic 15.0%
!!! TTTATTTGATTAATTTGCAA+GGG + chr1.3:69355526-69355545 None:intergenic 15.0%
!! AAAAAAAAGTTATTAGACAG+TGG + chr1.3:69356423-69356442 None:intergenic 20.0%
!! AAACTCAGATATGAAATATA+AGG + chr1.3:69356092-69356111 None:intergenic 20.0%
!! AACAATGTTAAAACAAACAA+GGG + chr1.3:69356034-69356053 None:intergenic 20.0%
!! AGATATGAAATATAAGGAAA+TGG + chr1.3:69356086-69356105 None:intergenic 20.0%
!! ATTGATTGCTGTAAAATATA+TGG - chr1.3:69355781-69355800 MS.gene49090:intron 20.0%
!! TGAAATAATTTAGTTATCGT+TGG - chr1.3:69356500-69356519 MS.gene49090:intron 20.0%
!! TTACAACAGATAAATACTAA+GGG + chr1.3:69356195-69356214 None:intergenic 20.0%
!! TTAGTATTTATCTGTTGTAA+CGG - chr1.3:69356195-69356214 MS.gene49090:intron 20.0%
!! TTATGCACTGTAAAATATAT+TGG - chr1.3:69355703-69355722 MS.gene49090:intron 20.0%
!!! ACTGAGAATTTTATCATAAT+CGG - chr1.3:69356470-69356489 MS.gene49090:intron 20.0%
!!! AGTTGTTTCAAAGTTTTTTT+TGG - chr1.3:69356557-69356576 MS.gene49090:intron 20.0%
!!! ATTATACTTATTTTACTTGC+AGG + chr1.3:69355589-69355608 None:intergenic 20.0%
! AAAAACCAATAAAAATGAGG+GGG + chr1.3:69356002-69356021 None:intergenic 25.0%
! ATTGATTGTTCTTTCATGTT+AGG - chr1.3:69355115-69355134 MS.gene49090:CDS 25.0%
! CAAAAGTCCTTAATTCATAT+TGG - chr1.3:69355652-69355671 MS.gene49090:intron 25.0%
! CTTGTATACAAATTGATTGA+TGG - chr1.3:69356870-69356889 MS.gene49090:intron 25.0%
! GAAAAACCAATAAAAATGAG+GGG + chr1.3:69356003-69356022 None:intergenic 25.0%
! GAACAATGTTAAAACAAACA+AGG + chr1.3:69356035-69356054 None:intergenic 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG + chr1.3:69356714-69356733 None:intergenic 25.0%
! GCACAAACAAATAAACAAAA+TGG + chr1.3:69355553-69355572 None:intergenic 25.0%
! GGAAAAACCAATAAAAATGA+GGG + chr1.3:69356004-69356023 None:intergenic 25.0%
! GTTACAACAGATAAATACTA+AGG + chr1.3:69356196-69356215 None:intergenic 25.0%
! TGGAAAAACCAATAAAAATG+AGG + chr1.3:69356005-69356024 None:intergenic 25.0%
! TTAGATGCCAATATGAATTA+AGG + chr1.3:69355662-69355681 None:intergenic 25.0%
! TTGATTGTTCTTTCATGTTA+GGG - chr1.3:69355116-69355135 MS.gene49090:CDS 25.0%
!! AATATGTGATGATACCTTTT+TGG + chr1.3:69355042-69355061 None:intergenic 25.0%
!! GTTATTACTCTTTTTGATGT+TGG - chr1.3:69356595-69356614 MS.gene49090:intron 25.0%
!! TTGAATGTAATCAAAAGTGT+CGG + chr1.3:69355396-69355415 None:intergenic 25.0%
AGGATTCATAACATCACAAA+TGG + chr1.3:69356694-69356713 None:intergenic 30.0%
ATAAAAATGAGGGGGAAAAA+TGG + chr1.3:69355994-69356013 None:intergenic 30.0%
ATCTTGAAGGAATAGAAGTT+AGG - chr1.3:69357186-69357205 MS.gene49090:CDS 30.0%
GATGAAAAACAATGAGAAGT+TGG - chr1.3:69356245-69356264 MS.gene49090:intron 30.0%
TAGCACTAAAATTGTCTGTT+TGG - chr1.3:69356950-69356969 MS.gene49090:intron 30.0%
TGCATTTCAATATACCCAAA+AGG + chr1.3:69355846-69355865 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.3:69355870-69355889 MS.gene49090:intron 30.0%
! AATGCTAATCATAAGCCTTT+TGG - chr1.3:69355828-69355847 MS.gene49090:intron 30.0%
! ACAAATTGATTGATGGCTAT+GGG - chr1.3:69356877-69356896 MS.gene49090:intron 30.0%
! ATGCTAATCATAAGCCTTTT+GGG - chr1.3:69355829-69355848 MS.gene49090:intron 30.0%
! TACAAATTGATTGATGGCTA+TGG - chr1.3:69356876-69356895 MS.gene49090:intron 30.0%
! TCATCATCGTCTGAAATATT+AGG - chr1.3:69355062-69355081 MS.gene49090:CDS 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG + chr1.3:69356335-69356354 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG + chr1.3:69356947-69356966 None:intergenic 30.0%
!! TTTTTCCCCCTCATTTTTAT+TGG - chr1.3:69355994-69356013 MS.gene49090:intron 30.0%
AAAACAAACAAGGGAGAAGT+TGG + chr1.3:69356025-69356044 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG - chr1.3:69356396-69356415 MS.gene49090:intron 35.0%
AAGACGAAGATTAGCAACTT+CGG + chr1.3:69356778-69356797 None:intergenic 35.0%
AAGGGGAATTTCTATCTTGA+AGG - chr1.3:69357173-69357192 MS.gene49090:CDS 35.0%
AGATGAAAGTTTCCTTGATG+AGG + chr1.3:69356138-69356157 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG + chr1.3:69356841-69356860 None:intergenic 35.0%
ATGAAAGTTTCCTTGATGAG+GGG + chr1.3:69356136-69356155 None:intergenic 35.0%
ATGATGATTGAAAACGTGTC+TGG - chr1.3:69355354-69355373 MS.gene49090:intron 35.0%
CATTGTTCTTTCTCCTTTCT+CGG - chr1.3:69356047-69356066 MS.gene49090:CDS 35.0%
CTTTACAAACCAAACCAACA+TGG + chr1.3:69355297-69355316 None:intergenic 35.0%
GATGAAAGTTTCCTTGATGA+GGG + chr1.3:69356137-69356156 None:intergenic 35.0%
GATGAGTGTTATCGAGATAA+AGG - chr1.3:69357139-69357158 MS.gene49090:CDS 35.0%
TAAGCTGCATACTGAGTATT+TGG + chr1.3:69356849-69356868 None:intergenic 35.0%
TAGATCTCTCCACATTTCTT+GGG - chr1.3:69355917-69355936 MS.gene49090:intron 35.0%
TCAGGTGTATGGTTAACTTT+GGG + chr1.3:69356371-69356390 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.3:69355857-69355876 MS.gene49090:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG + chr1.3:69356389-69356408 None:intergenic 35.0%
TTATCTCGATAACACTCATC+TGG + chr1.3:69357139-69357158 None:intergenic 35.0%
TTCAAGATAGAAATTCCCCT+TGG + chr1.3:69357174-69357193 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG + chr1.3:69356372-69356391 None:intergenic 35.0%
! AATCTCTGCAACTTTTGTGT+TGG - chr1.3:69356743-69356762 MS.gene49090:intron 35.0%
! TCTGGACTTCTTCATTTTCA+AGG + chr1.3:69357121-69357140 None:intergenic 35.0%
AAGGAAAGTCTTGGAAACGA+CGG + chr1.3:69354871-69354890 None:intergenic 40.0%
AATGAACAATTCGCCGAGAA+AGG + chr1.3:69356063-69356082 None:intergenic 40.0%
AGACGAAGATTAGCAACTTC+GGG + chr1.3:69356777-69356796 None:intergenic 40.0%
AGATCTCTCCACATTTCTTG+GGG - chr1.3:69355918-69355937 MS.gene49090:intron 40.0%
AGCAAATGCTCCTTCCAAAA+AGG - chr1.3:69354971-69354990 MS.gene49090:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.3:69357193-69357212 MS.gene49090:CDS 40.0%
AGGGGAATAGGATCAATCAA+CGG + chr1.3:69356118-69356137 None:intergenic 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.3:69357143-69357162 MS.gene49090:CDS 40.0%
ATGATAGAGTCGATGTCAGA+AGG + chr1.3:69354933-69354952 None:intergenic 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.3:69357095-69357114 MS.gene49090:CDS 40.0%
ATGTTTGTGTGTGTCTGTGT+CGG - chr1.3:69355465-69355484 MS.gene49090:intron 40.0%
CTAGATCTCTCCACATTTCT+TGG - chr1.3:69355916-69355935 MS.gene49090:intron 40.0%
CTGTTGTAACGGTAATCAAC+TGG - chr1.3:69356206-69356225 MS.gene49090:intron 40.0%
CTTCCTGTGGATTTATCTGT+CGG - chr1.3:69356909-69356928 MS.gene49090:intron 40.0%
GACCAACATCACTGTTATTG+AGG + chr1.3:69356401-69356420 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG + chr1.3:69355009-69355028 None:intergenic 40.0%
TACAAACCAAACCAACATGG+CGG + chr1.3:69355294-69355313 None:intergenic 40.0%
TGATAGAGTCGATGTCAGAA+GGG + chr1.3:69354932-69354951 None:intergenic 40.0%
TGATGATAGGTCGATCAGAT+AGG + chr1.3:69355010-69355029 None:intergenic 40.0%
TGGATTCAAATGTAGAACGC+AGG - chr1.3:69356970-69356989 MS.gene49090:CDS 40.0%
TTGCTAATCTTCGTCTTGTG+TGG - chr1.3:69356781-69356800 MS.gene49090:intron 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG + chr1.3:69354984-69355003 None:intergenic 40.0%
!! CATTCAGAAGTGAAAGTGCT+AGG + chr1.3:69355337-69355356 None:intergenic 40.0%
AAAATGGCCAACCTGGAATC+AGG + chr1.3:69355978-69355997 None:intergenic 45.0%
AAACCAACATGGCGGTTCAA+CGG + chr1.3:69355286-69355305 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG + chr1.3:69354907-69354926 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG + chr1.3:69356915-69356934 None:intergenic 45.0%
AGGGAGAAAGTGATTCCAGA+CGG + chr1.3:69354913-69354932 None:intergenic 45.0%
AGTTGTACGTGACAGTATGG+AGG + chr1.3:69354826-69354845 None:intergenic 45.0%
ATAAAGGCTGGTGAGACCAA+GGG - chr1.3:69357155-69357174 MS.gene49090:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG - chr1.3:69355943-69355962 MS.gene49090:intron 45.0%
CATCATCACCCCAAGAAATG+TGG + chr1.3:69355929-69355948 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG - chr1.3:69355025-69355044 MS.gene49090:CDS 45.0%
CGACAGATAAATCCACAGGA+AGG + chr1.3:69356911-69356930 None:intergenic 45.0%
CGCAGACATGGAAGACTTTA+CGG - chr1.3:69356999-69357018 MS.gene49090:CDS 45.0%
CGTAAAGTCTTCCATGTCTG+CGG + chr1.3:69357001-69357020 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG - chr1.3:69356784-69356803 MS.gene49090:intron 45.0%
GACACAGACACACACAAACA+TGG + chr1.3:69355466-69355485 None:intergenic 45.0%
GACGAAGATTAGCAACTTCG+GGG + chr1.3:69356776-69356795 None:intergenic 45.0%
GAGGTTCAGATTCAGGTGTA+TGG + chr1.3:69356382-69356401 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG - chr1.3:69356160-69356179 MS.gene49090:intron 45.0%
GGGTTCGAAGATTTAGCAGA+AGG - chr1.3:69354792-69354811 MS.gene49090:CDS 45.0%
GTCCTAGTGTGAGAAGTGAT+GGG - chr1.3:69357057-69357076 MS.gene49090:CDS 45.0%
GTTTCCTTGATGAGGGGAAT+AGG + chr1.3:69356130-69356149 None:intergenic 45.0%
TAGCAGTCCAGATCCAATAG+CGG + chr1.3:69355953-69355972 None:intergenic 45.0%
TGATCCTATTCCCCTCATCA+AGG - chr1.3:69356123-69356142 MS.gene49090:CDS 45.0%
TGGAGTTGTACGTGACAGTA+TGG + chr1.3:69354829-69354848 None:intergenic 45.0%
TTGGCATCGTCGATGATGAT+AGG + chr1.3:69355023-69355042 None:intergenic 45.0%
! CTGCAACTTTTGTGTTGGAC+AGG - chr1.3:69356748-69356767 MS.gene49090:intron 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG + chr1.3:69354988-69355007 None:intergenic 45.0%
!! AAAGTGTCGGTGACAACAGT+CGG + chr1.3:69355383-69355402 None:intergenic 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG + chr1.3:69354966-69354985 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.3:69356918-69356937 MS.gene49090:intron 45.0%
!! TACATTTATTATTATTATTA+GGG - chr1.3:69355239-69355258 MS.gene49090:intron 5.0%
ACGTACAACTCCAGTTGACG+CGG - chr1.3:69354836-69354855 MS.gene49090:CDS 50.0%
AGGTTGCATGACAGAGTAGG+AGG - chr1.3:69357026-69357045 MS.gene49090:CDS 50.0%
ATGGAAGACTTTACGGTGCG+AGG - chr1.3:69357006-69357025 MS.gene49090:CDS 50.0%
ATGGCGGTTCAACGGAACAT+CGG + chr1.3:69355278-69355297 None:intergenic 50.0%
CACCCATCACTTCTCACACT+AGG + chr1.3:69357062-69357081 None:intergenic 50.0%
CGTCCTAGTGTGAGAAGTGA+TGG - chr1.3:69357056-69357075 MS.gene49090:CDS 50.0%
GATAAAGGCTGGTGAGACCA+AGG - chr1.3:69357154-69357173 MS.gene49090:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.3:69357077-69357096 MS.gene49090:CDS 50.0%
TAAAGGCTGGTGAGACCAAG+GGG - chr1.3:69357156-69357175 MS.gene49090:CDS 50.0%
TCACTTCTCACACTAGGACG+CGG + chr1.3:69357056-69357075 None:intergenic 50.0%
TGCTATGCCTGATTCCAGGT+TGG - chr1.3:69355968-69355987 MS.gene49090:intron 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.3:69357076-69357095 MS.gene49090:CDS 50.0%
TGGGTTTGAGAACCTTCCTG+TGG - chr1.3:69356896-69356915 MS.gene49090:intron 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.3:69356799-69356818 MS.gene49090:intron 50.0%
! ATTCCAGACGGCATCGGAAT+CGG + chr1.3:69354901-69354920 None:intergenic 50.0%
! CTAGTGTGAGAAGTGATGGG+TGG - chr1.3:69357060-69357079 MS.gene49090:CDS 50.0%
! GTTGAACCGCCATGTTGGTT+TGG - chr1.3:69355285-69355304 MS.gene49090:intron 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr1.3:69357064-69357083 MS.gene49090:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.3:69356921-69356940 MS.gene49090:intron 50.0%
AGGGGGAAAAATGGCCAACC+TGG + chr1.3:69355985-69356004 None:intergenic 55.0%
CGTACAACTCCAGTTGACGC+GGG - chr1.3:69354837-69354856 MS.gene49090:CDS 55.0%
GCGAGGTTGCATGACAGAGT+AGG - chr1.3:69357023-69357042 MS.gene49090:CDS 55.0%
GGACTGCTATGCCTGATTCC+AGG - chr1.3:69355964-69355983 MS.gene49090:intron 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.3:69354880-69354899 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.3:69356798-69356817 MS.gene49090:intron 55.0%
GTTCCGTTGAACCGCCATGT+TGG - chr1.3:69355280-69355299 MS.gene49090:intron 55.0%
! GGGGTGATGATGACCGCTAT+TGG - chr1.3:69355937-69355956 MS.gene49090:intron 55.0%
CATCGGAATCGGCGGCAGAA+AGG + chr1.3:69354890-69354909 None:intergenic 60.0%
CGCAGGCAGAACCGCAGACA+TGG - chr1.3:69356987-69357006 MS.gene49090:CDS 65.0%
GAGAGTCTGCCCGCGTCAAC+TGG + chr1.3:69354849-69354868 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG + chr1.3:69354898-69354917 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG - chr1.3:69354895-69354914 MS.gene49090:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69354786 69357226 69354786 ID=MS.gene49090
chr1.3 mRNA 69354786 69357226 69354786 ID=MS.gene49090.t1;Parent=MS.gene49090
chr1.3 exon 69356966 69357226 69356966 ID=MS.gene49090.t1.exon1;Parent=MS.gene49090.t1
chr1.3 CDS 69356966 69357226 69356966 ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1
chr1.3 exon 69356027 69356145 69356027 ID=MS.gene49090.t1.exon2;Parent=MS.gene49090.t1
chr1.3 CDS 69356027 69356145 69356027 ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1
chr1.3 exon 69354786 69355242 69354786 ID=MS.gene49090.t1.exon3;Parent=MS.gene49090.t1
chr1.3 CDS 69354786 69355242 69354786 ID=cds.MS.gene49090.t1;Parent=MS.gene49090.t1
Gene Sequence

>MS.gene49090

ATGACAGGGTTCGAAGATTTAGCAGAAGGATGCATTTCCTCCATACTGTCACGTACAACTCCAGTTGACGCGGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTCCCTTCTGACATCGACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGCTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTCACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCAATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTAGGGTAGTGCAGCAGATCCGATGTTCCGTTGAACCGCCATGTTGGTTTGGTTTGTAAAGATATCAGATTAGATCTACCTAGCACTTTCACTTCTGAATGATGATTGAAAACGTGTCTGGTGTCCGACTGTTGTCACCGACACTTTTGATTACATTCAATTATGTCATTTTTTTTAAAGTAATTACTGCTGTCAATGTGTAACTATCCATGTTTGTGTGTGTCTGTGTCGGTGATTCATAACATTAGATATATTATTAAATGGGTACCCTTGCAAATTAATCAAATAAATTAACCATTTTGTTTATTTGTTTGTGCTTTTAAATTGTGTCCTGCAAGTAAAATAAGTATAATTAAGATGAGACTCAATATTAGCTGAGCATTGTAAAAAAAAAGACAAAAGTCCTTAATTCATATTGGCATCTAATATCTTTGAGATCTCAACAGTTTATGCACTGTAAAATATATTGGCTGAAGAAAGTCTGCTAATATGCATGTATTTTCTACAGTTACATACGAATACTCAATTGATTGCTGTAAAATATATGGTGATTTTTTAAACGCTTAGTTCAGAATGCTAATCATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTCCACATTTCTTGGGGTGATGATGACCGCTATTGGATCTGGACTGCTATGCCTGATTCCAGGTTGGCCATTTTTCCCCCTCATTTTTATTGGTTTTTCCAACTTCTCCCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGCGAATTGTTCATTCCATTTCCTTATATTTCATATCTGAGTTTATACCGTTGATTGATCCTATTCCCCTCATCAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCTTAGTATTTATCTGTTGTAACGGTAATCAACTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGGAATATACCTAAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAATTTTATCATAATCGGTTACACTTGAAATAATTTAGTTATCGTTGGTACAATATATGATAATTGATGTTTTTATTAGTTGAGTTGTTTCAAAGTTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGTTGGAAACTTTGATTCAACTTGCAAATTTTAGTTGATGAGCTTGTATTGTTTGTGTACGTACACATGTATAAATGTTCCATTTGTGATGTTATGAATCCTTTTCAACTTTTTCTCAATTCTTGTATTCTAATCTCTGCAACTTTTGTGTTGGACAGGTTCCCCGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTTGTATACAAATTGATTGATGGCTATGGGTTTGAGAACCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATTCAAATGTAGAACGCAGGCAGAACCGCAGACATGGAAGACTTTACGGTGCGAGGTTGCATGACAGAGTAGGAGGATTACCGCGTCCTAGTGTGAGAAGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGAAGTCCAGATGAGTGTTATCGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAGGTAGACAATTAA

Protein sequence

>MS.gene49090.t1

MTGFEDLAEGCISSILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDIDSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGKKCYMLAARSLHISWGDDDRYWIWTAMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVYKLIDGYGFENLPVDLSVGVEGGHSSTKIVCLDSNVERRQNRRHGRLYGARLHDRVGGLPRPSVRSDGWLEIEMGEFFNSGLENEEVQMSVIEIKAGETKGNFYLEGIEVRPKVDN