AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43943

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43943.t1 MTR_1g079850 91.549 284 24 0 5 288 1 284 0.0 530
MS.gene43943.t1 MTR_1g100597 70.070 284 76 5 5 288 1 275 2.39e-130 371
MS.gene43943.t1 MTR_1g079180 67.972 281 74 5 5 285 1 265 1.90e-128 366
MS.gene43943.t1 MTR_1g079370 64.057 281 85 3 5 285 1 265 3.56e-124 355
MS.gene43943.t1 MTR_1g079200 66.078 283 75 3 5 285 1 264 7.51e-123 352
MS.gene43943.t1 MTR_1g079230 65.263 285 89 4 5 288 1 276 1.76e-120 346
MS.gene43943.t1 MTR_1g079260 62.807 285 95 4 5 288 1 275 1.10e-118 342
MS.gene43943.t1 MTR_1g079460 61.972 284 93 3 5 288 1 269 2.10e-115 333
MS.gene43943.t1 MTR_1g079380 62.278 281 90 2 5 285 1 265 9.14e-115 332
MS.gene43943.t1 MTR_1g079250 65.625 288 88 6 5 288 1 281 4.32e-114 331
MS.gene43943.t1 MTR_1g100613 68.675 249 65 4 24 268 5 244 4.19e-110 318
MS.gene43943.t1 MTR_3g006850 58.766 308 94 6 8 288 17 318 2.10e-105 310
MS.gene43943.t1 MTR_1g026510 58.362 293 106 6 5 288 1 286 9.07e-105 307
MS.gene43943.t1 MTR_3g452600 57.193 285 102 3 4 288 6 270 2.27e-101 297
MS.gene43943.t1 MTR_2g079100 56.584 281 96 3 4 282 5 261 1.70e-93 277
MS.gene43943.t1 MTR_3g450990 53.156 301 105 5 4 288 6 286 1.10e-90 271
MS.gene43943.t1 MTR_1g079410 49.828 291 124 5 1 286 1 274 2.09e-84 254
MS.gene43943.t1 MTR_1g079350 52.218 293 110 8 5 285 1 275 1.78e-83 252
MS.gene43943.t1 MTR_1g079340 50.820 305 113 9 2 285 37 325 2.73e-82 251
MS.gene43943.t1 MTR_1g079140 46.801 297 136 5 8 285 13 306 3.50e-78 240
MS.gene43943.t1 MTR_7g096300 54.135 266 93 7 5 265 1 242 1.03e-74 243
MS.gene43943.t1 MTR_1g079400 43.056 288 132 6 9 285 13 279 1.62e-64 204
MS.gene43943.t1 MTR_1g078470 56.757 185 63 3 101 285 17 184 4.30e-63 197
MS.gene43943.t1 MTR_7g112550 41.724 290 154 10 3 285 2 283 4.44e-60 192
MS.gene43943.t1 MTR_1g083580 38.889 288 156 9 6 285 6 281 9.44e-59 189
MS.gene43943.t1 MTR_1g079240 53.927 191 65 3 95 285 12 179 3.45e-55 177
MS.gene43943.t1 MTR_2g042540 73.832 107 26 1 5 111 1 105 1.22e-48 158
MS.gene43943.t1 MTR_7g112560 36.918 279 153 7 8 285 1 257 5.15e-47 158
MS.gene43943.t1 MTR_1g076870 59.259 135 49 2 136 265 2 135 5.00e-46 152
MS.gene43943.t1 MTR_1g079350 52.663 169 69 4 5 167 1 164 2.67e-44 150
MS.gene43943.t1 MTR_4g023570 34.173 278 142 4 8 285 1 237 9.00e-42 144
MS.gene43943.t1 MTR_1g079130 44.444 189 93 4 109 285 1 189 1.44e-38 134
MS.gene43943.t1 MTR_1g079210 56.250 128 48 2 137 260 7 130 8.82e-38 130
MS.gene43943.t1 MTR_1g078460 67.391 92 26 2 4 95 63 150 8.16e-31 113
MS.gene43943.t1 MTR_3g058640 53.509 114 39 1 136 249 7 106 3.22e-30 110
MS.gene43943.t1 MTR_7g096310 49.635 137 63 3 58 190 25 159 7.74e-28 105
MS.gene43943.t1 MTR_7g103380 23.549 293 186 6 7 286 18 285 1.68e-22 94.7
MS.gene43943.t1 MTR_0002s0020 29.825 171 113 3 1 169 18 183 1.74e-18 83.6
MS.gene43943.t1 MTR_0113s0040 31.973 147 97 2 8 154 22 165 1.90e-18 83.6
MS.gene43943.t1 MTR_4g083970 26.141 241 137 7 54 285 82 290 1.70e-17 80.9
MS.gene43943.t1 MTR_5g010800 31.126 151 97 4 7 155 16 161 2.36e-17 80.5
MS.gene43943.t1 MTR_1g101390 25.887 282 176 11 10 286 30 283 1.70e-16 78.2
MS.gene43943.t1 MTR_1g079220 49.367 79 26 1 173 251 1 65 1.41e-15 70.5
MS.gene43943.t1 MTR_4g102770 31.034 145 98 2 10 154 21 163 2.23e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43943.t1 AT1G80110 43.636 275 131 7 11 284 4 255 6.40e-66 207
MS.gene43943.t1 AT2G02360 38.214 280 145 5 8 284 14 268 1.41e-61 196
MS.gene43943.t1 AT1G09155 41.197 284 152 7 11 285 3 280 6.11e-56 182
MS.gene43943.t1 AT2G02250 37.857 280 148 7 8 284 47 303 1.91e-54 179
MS.gene43943.t1 AT2G02240 37.589 282 153 5 8 288 61 320 1.92e-53 177
MS.gene43943.t1 AT2G02230 34.483 319 167 8 3 288 27 336 2.50e-53 177
MS.gene43943.t1 AT1G56240 39.146 281 160 5 11 284 4 280 8.53e-53 174
MS.gene43943.t1 AT1G56250 39.007 282 161 5 11 285 4 281 1.41e-49 166
MS.gene43943.t1 AT2G02340 34.375 288 162 7 5 284 33 301 7.80e-48 162
MS.gene43943.t1 AT2G02310 35.106 282 159 8 8 286 45 305 1.67e-44 153
MS.gene43943.t1 AT2G02350 32.979 282 163 7 7 284 23 282 3.37e-42 147
MS.gene43943.t1 AT2G02320 34.737 285 148 10 10 284 42 298 1.20e-39 140
MS.gene43943.t1 AT2G02300 32.414 290 146 9 7 286 33 282 8.20e-39 138
MS.gene43943.t1 AT5G24560 45.890 146 72 2 7 152 2 140 9.28e-37 130
MS.gene43943.t1 AT3G53000 26.460 291 175 7 10 287 23 287 1.47e-24 100
MS.gene43943.t1 AT2G02350 30.556 180 106 5 109 284 1 165 3.96e-18 80.5
MS.gene43943.t1 AT1G12710 29.878 164 109 3 10 173 30 187 6.45e-17 79.3
MS.gene43943.t1 AT1G63090 28.986 207 124 6 10 200 28 227 3.97e-16 77.0
MS.gene43943.t1 AT3G61060 28.767 146 97 3 10 153 27 167 6.88e-16 76.6
MS.gene43943.t1 AT5G52120 30.769 156 103 2 3 154 16 170 7.90e-16 76.3
MS.gene43943.t1 AT3G61060 27.397 146 100 2 10 153 27 168 1.60e-15 75.5
MS.gene43943.t1 AT1G12710 29.747 158 97 4 10 157 30 183 4.26e-12 65.9

Find 86 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATATGGCTCCGTCTTTC+TGG 0.113222 1.3:-56548945 MS.gene43943:CDS
TTCAAGATGATTGCGGTATT+TGG 0.206757 1.3:-56549071 MS.gene43943:CDS
TAAGCCGCATACTGAGTAAT+TGG 0.244954 1.3:+56549101 None:intergenic
CCGCTGATTCCGACGCCGTC+TGG 0.306305 1.3:-56549759 MS.gene43943:CDS
AAGCACTAAAATTGTGTGTT+TGG 0.322198 1.3:-56548997 MS.gene43943:CDS
TGAAGAAGCTTAGCAACTTT+GGG 0.332813 1.3:+56549173 None:intergenic
TGAGCATTGTCGATGATGAT+AGG 0.336712 1.3:+56549622 None:intergenic
TGCCAACGCTCCTACCAAAA+AGG 0.348280 1.3:-56549671 MS.gene43943:CDS
TAGATCTCTCGCCATTGCTT+GGG 0.355736 1.3:-56549388 MS.gene43943:CDS
GTGCGTTGGCTTGAAATTCA+TGG 0.359165 1.3:-56549149 MS.gene43943:CDS
CTTAATCAATTGTCTTCCTT+AGG 0.364137 1.3:+56548732 None:intergenic
CTAGATCTCTCGCCATTGCT+TGG 0.374556 1.3:-56549389 MS.gene43943:CDS
AAGGGAAATTTCTTTCTTGA+AGG 0.377188 1.3:-56548768 MS.gene43943:CDS
ATAGGAACAAAGAACTAATA+TGG 0.377474 1.3:-56548959 MS.gene43943:CDS
GTGAAGAAGCTTAGCAACTT+TGG 0.379608 1.3:+56549172 None:intergenic
GGATTGCTGTGCCTGATTCC+AGG 0.382495 1.3:-56549341 MS.gene43943:intron
TGATGATAGGGCGCTCAGAT+AGG 0.392390 1.3:+56549635 None:intergenic
AGATGATGAAGTCGATGAAT+TGG 0.404952 1.3:+56549713 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.416329 1.3:-56549448 MS.gene43943:intron
GATGATGAAGTCGATGAATT+GGG 0.420088 1.3:+56549714 None:intergenic
AAGCCGCATACTGAGTAATT+GGG 0.424150 1.3:+56549102 None:intergenic
GCATAACCAAACCTGGAATC+AGG 0.428282 1.3:+56549330 None:intergenic
CGGAGTGGTACGAGATAGTA+TGG 0.433671 1.3:+56549828 None:intergenic
TAATATGGCTCCGTCTTTCT+GGG 0.439907 1.3:-56548944 MS.gene43943:CDS
TTGTTCCTATGTACCAAGCT+TGG 0.444587 1.3:+56548972 None:intergenic
CATCATCGACAATGCTCAAA+AGG 0.444946 1.3:-56549617 MS.gene43943:intron
CATCCTGTGGACTTGTTAGT+TGG 0.456770 1.3:-56549038 MS.gene43943:CDS
TGGATCCAAGCTTGGTACAT+AGG 0.466567 1.3:-56548977 MS.gene43943:CDS
CTAAGCTTCTTCACGTGCGT+TGG 0.466916 1.3:-56549163 MS.gene43943:CDS
GGTAAAATGCAAAACAGAAT+GGG 0.467299 1.3:-56549886 None:intergenic
ATTAGTGTTATCGAGATAGA+TGG 0.468630 1.3:-56548801 MS.gene43943:CDS
GGGAACGTTTGAAGAATTAC+CGG 0.469130 1.3:-56549866 MS.gene43943:CDS
ATGTCGCACAACAAAGTAGT+AGG 0.481595 1.3:-56548915 MS.gene43943:CDS
ATGGCGGCAATGCACCCTTC+CGG 0.486147 1.3:+56549847 None:intergenic
CCACTCCGGCTGACGTCGGC+AGG 0.500315 1.3:-56549813 MS.gene43943:CDS
ACGATGATCGATATTGCAAA+TGG 0.500644 1.3:-56549362 MS.gene43943:CDS
GAGCATTGTCGATGATGATA+GGG 0.502802 1.3:+56549623 None:intergenic
GAGAACCTGCCGACGTCAGC+CGG 0.503179 1.3:+56549808 None:intergenic
AGGTAAAATGCAAAACAGAA+TGG 0.506013 1.3:-56549887 None:intergenic
AGCGGCAGAACGGAATGTCT+TGG 0.509093 1.3:+56549777 None:intergenic
TTCTTTAATTTATGCCTCGA+AGG 0.519154 1.3:-56548837 MS.gene43943:CDS
GATGATAGGGCGCTCAGATA+GGG 0.525529 1.3:+56549636 None:intergenic
CGTCCTTGTGTGAGACGTGA+TGG 0.528932 1.3:-56548885 MS.gene43943:CDS
AGGAATAGAAGTTAGACCTA+AGG 0.534122 1.3:-56548748 MS.gene43943:CDS
TCAAGAAAGAAATTTCCCTT+CGG 0.536909 1.3:+56548771 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.3:-56548864 MS.gene43943:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.3:-56548865 MS.gene43943:CDS
AGTAATTGGGGACAAGGCAC+AGG 0.544142 1.3:+56549115 None:intergenic
GTAGGAGCGTTGGCAATGGA+AGG 0.561351 1.3:+56549679 None:intergenic
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.3:-56549435 MS.gene43943:CDS
AGATCTCTCGCCATTGCTTG+GGG 0.568943 1.3:-56549387 MS.gene43943:CDS
TGTGGACTTCTACACCTTCG+AGG 0.569696 1.3:+56548823 None:intergenic
TCTTGTGTTCAAGATGATTG+CGG 0.577737 1.3:-56549078 MS.gene43943:CDS
CCAGACGGCGTCGGAATCAG+CGG 0.582407 1.3:+56549759 None:intergenic
TGTGTGTTTGGATCCAAGCT+TGG 0.582832 1.3:-56548985 MS.gene43943:CDS
GTCCCCAATTACTCAGTATG+CGG 0.584074 1.3:-56549105 MS.gene43943:CDS
CTATCTCGATAACACTAATG+TGG 0.592924 1.3:+56548805 None:intergenic
GACTTGTTAGTTGGTGTCGA+AGG 0.594500 1.3:-56549029 MS.gene43943:CDS
ATCATCGTCACCCCAAGCAA+TGG 0.595008 1.3:+56549377 None:intergenic
CACCCATCACGTCTCACACA+AGG 0.595122 1.3:+56548882 None:intergenic
CCTGCCGACGTCAGCCGGAG+TGG 0.595334 1.3:+56549813 None:intergenic
TGTGAGACGTGATGGGTGGT+TGG 0.601299 1.3:-56548877 MS.gene43943:CDS
GAAGAAGCTTAGCAACTTTG+GGG 0.601922 1.3:+56549174 None:intergenic
TTTGGTAGGAGCGTTGGCAA+TGG 0.610470 1.3:+56549675 None:intergenic
ACATACTAGTCCCAGAAAGA+CGG 0.611319 1.3:+56548934 None:intergenic
GATAGATGGTGATTTGCCGA+AGG 0.613865 1.3:-56548787 MS.gene43943:CDS
ATAGATGGTGATTTGCCGAA+GGG 0.616572 1.3:-56548786 MS.gene43943:CDS
CGTCGGAATCAGCGGCAGAA+CGG 0.619760 1.3:+56549767 None:intergenic
ACACCAACTAACAAGTCCAC+AGG 0.620063 1.3:+56549035 None:intergenic
CGTTTGAAGAATTACCGGAA+GGG 0.623415 1.3:-56549861 MS.gene43943:CDS
ATGATGAAGTCGATGAATTG+GGG 0.626092 1.3:+56549715 None:intergenic
GTCCTTGTGTGAGACGTGAT+GGG 0.628973 1.3:-56548884 MS.gene43943:CDS
ACGTTTGAAGAATTACCGGA+AGG 0.633270 1.3:-56549862 MS.gene43943:CDS
AGCCGCATACTGAGTAATTG+GGG 0.640308 1.3:+56549103 None:intergenic
TGGATTTGAGAATCATCCTG+TGG 0.644402 1.3:-56549051 MS.gene43943:CDS
GGAGCGTTGGCAATGGAAGG+AGG 0.646074 1.3:+56549682 None:intergenic
AAAATGATTCCAGACGGCGT+CGG 0.652221 1.3:+56549750 None:intergenic
ATACTGAGTAATTGGGGACA+AGG 0.658194 1.3:+56549109 None:intergenic
TGACGTCGGCAGGTTCTCCG+TGG 0.673421 1.3:-56549803 MS.gene43943:CDS
ACGGAGAAAATGATTCCAGA+CGG 0.677220 1.3:+56549744 None:intergenic
TGATGAAGTCGATGAATTGG+GGG 0.685586 1.3:+56549716 None:intergenic
CTTGTGTGAGACGTGATGGG+TGG 0.689727 1.3:-56548881 MS.gene43943:CDS
ACGGAATGTCTTGGAAACCA+CGG 0.690249 1.3:+56549786 None:intergenic
CGTACCACTCCGGCTGACGT+CGG 0.713269 1.3:-56549817 MS.gene43943:CDS
CATACTATCTCGTACCACTC+CGG 0.714669 1.3:-56549827 MS.gene43943:CDS
AGTGGTACGAGATAGTATGG+CGG 0.804735 1.3:+56549831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGAGACTAAAATT+TGG + chr1.3:56549401-56549420 None:intergenic 15.0%
!!! TAGAAACTGAATTTAATTTT+TGG - chr1.3:56549105-56549124 MS.gene43943:CDS 15.0%
! ATAGGAACAAAGAACTAATA+TGG - chr1.3:56549658-56549677 MS.gene43943:CDS 25.0%
! TATAAATACTCCATTTGTGT+TGG - chr1.3:56549413-56549432 MS.gene43943:CDS 25.0%
! TTGTCAATTATACGAGAAAT+TGG + chr1.3:56549047-56549066 None:intergenic 25.0%
AAGCACTAAAATTGTGTGTT+TGG - chr1.3:56549620-56549639 MS.gene43943:CDS 30.0%
AAGGGAAATTTCTTTCTTGA+AGG - chr1.3:56549849-56549868 MS.gene43943:CDS 30.0%
AATTTGGAAGTTGTAAACCA+AGG + chr1.3:56549385-56549404 None:intergenic 30.0%
ATAGTAAGAAAACACAGAGA+GGG - chr1.3:56549076-56549095 MS.gene43943:CDS 30.0%
ATTAGTGTTATCGAGATAGA+TGG - chr1.3:56549816-56549835 MS.gene43943:CDS 30.0%
ATTTGGAAGTTGTAAACCAA+GGG + chr1.3:56549384-56549403 None:intergenic 30.0%
TATAGTAAGAAAACACAGAG+AGG - chr1.3:56549075-56549094 MS.gene43943:CDS 30.0%
TCAAGAAAGAAATTTCCCTT+CGG + chr1.3:56549849-56549868 None:intergenic 30.0%
TCAATTATACGAGAAATTGG+AGG + chr1.3:56549044-56549063 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.3:56549182-56549201 MS.gene43943:intron 30.0%
! TGAAATGATTTTGTTACCCT+TGG - chr1.3:56549365-56549384 MS.gene43943:CDS 30.0%
! TTCTTTAATTTATGCCTCGA+AGG - chr1.3:56549780-56549799 MS.gene43943:CDS 30.0%
!! ACACAATTTTAGTGCTTCTA+TGG + chr1.3:56549617-56549636 None:intergenic 30.0%
ACGATGATCGATATTGCAAA+TGG - chr1.3:56549255-56549274 MS.gene43943:intron 35.0%
AGATGATGAAGTCGATGAAT+TGG + chr1.3:56548907-56548926 None:intergenic 35.0%
AGGAATAGAAGTTAGACCTA+AGG - chr1.3:56549869-56549888 MS.gene43943:CDS 35.0%
ATACTCCATTTGTGTTGGAT+AGG - chr1.3:56549418-56549437 MS.gene43943:CDS 35.0%
ATGATGAAGTCGATGAATTG+GGG + chr1.3:56548905-56548924 None:intergenic 35.0%
ATTATACGAGAAATTGGAGG+AGG + chr1.3:56549041-56549060 None:intergenic 35.0%
CTATCTCGATAACACTAATG+TGG + chr1.3:56549815-56549834 None:intergenic 35.0%
GATGATGAAGTCGATGAATT+GGG + chr1.3:56548906-56548925 None:intergenic 35.0%
TCTTGTGTTCAAGATGATTG+CGG - chr1.3:56549539-56549558 MS.gene43943:intron 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.3:56549169-56549188 MS.gene43943:CDS 35.0%
TGAAGAAGCTTAGCAACTTT+GGG + chr1.3:56549447-56549466 None:intergenic 35.0%
TTCAAGATGATTGCGGTATT+TGG - chr1.3:56549546-56549565 MS.gene43943:intron 35.0%
AAGCCGCATACTGAGTAATT+GGG + chr1.3:56549518-56549537 None:intergenic 40.0%
ACATACTAGTCCCAGAAAGA+CGG + chr1.3:56549686-56549705 None:intergenic 40.0%
ACGGAGAAAATGATTCCAGA+CGG + chr1.3:56548876-56548895 None:intergenic 40.0%
ACGTTTGAAGAATTACCGGA+AGG - chr1.3:56548755-56548774 MS.gene43943:CDS 40.0%
ATACTGAGTAATTGGGGACA+AGG + chr1.3:56549511-56549530 None:intergenic 40.0%
ATGTCGCACAACAAAGTAGT+AGG - chr1.3:56549702-56549721 MS.gene43943:CDS 40.0%
CATCATCGACAATGCTCAAA+AGG - chr1.3:56549000-56549019 MS.gene43943:CDS 40.0%
CGTTTGAAGAATTACCGGAA+GGG - chr1.3:56548756-56548775 MS.gene43943:CDS 40.0%
GAAGAAGCTTAGCAACTTTG+GGG + chr1.3:56549446-56549465 None:intergenic 40.0%
GGGAACGTTTGAAGAATTAC+CGG - chr1.3:56548751-56548770 MS.gene43943:CDS 40.0%
GTGAAGAAGCTTAGCAACTT+TGG + chr1.3:56549448-56549467 None:intergenic 40.0%
GTTTCAAGCATAACCAAACC+TGG + chr1.3:56549297-56549316 None:intergenic 40.0%
TAAGCCGCATACTGAGTAAT+TGG + chr1.3:56549519-56549538 None:intergenic 40.0%
TAATATGGCTCCGTCTTTCT+GGG - chr1.3:56549673-56549692 MS.gene43943:CDS 40.0%
TGATGAAGTCGATGAATTGG+GGG + chr1.3:56548904-56548923 None:intergenic 40.0%
TGGATTTGAGAATCATCCTG+TGG - chr1.3:56549566-56549585 MS.gene43943:intron 40.0%
TTGTTCCTATGTACCAAGCT+TGG + chr1.3:56549648-56549667 None:intergenic 40.0%
! ATAGATGGTGATTTGCCGAA+GGG - chr1.3:56549831-56549850 MS.gene43943:CDS 40.0%
! GAGCATTGTCGATGATGATA+GGG + chr1.3:56548997-56549016 None:intergenic 40.0%
! TGAGCATTGTCGATGATGAT+AGG + chr1.3:56548998-56549017 None:intergenic 40.0%
!! AGAAAGAGAGCCTTTTTGGT+AGG + chr1.3:56548959-56548978 None:intergenic 40.0%
AAAATGATTCCAGACGGCGT+CGG + chr1.3:56548870-56548889 None:intergenic 45.0%
ACACCAACTAACAAGTCCAC+AGG + chr1.3:56549585-56549604 None:intergenic 45.0%
ACGGAATGTCTTGGAAACCA+CGG + chr1.3:56548834-56548853 None:intergenic 45.0%
AGCCGCATACTGAGTAATTG+GGG + chr1.3:56549517-56549536 None:intergenic 45.0%
AGTGGTACGAGATAGTATGG+CGG + chr1.3:56548789-56548808 None:intergenic 45.0%
CATACTATCTCGTACCACTC+CGG - chr1.3:56548790-56548809 MS.gene43943:CDS 45.0%
CTAATATGGCTCCGTCTTTC+TGG - chr1.3:56549672-56549691 MS.gene43943:CDS 45.0%
GCATAACCAAACCTGGAATC+AGG + chr1.3:56549290-56549309 None:intergenic 45.0%
GGGAACCTATCCAACACAAA+TGG + chr1.3:56549426-56549445 None:intergenic 45.0%
GTCCCCAATTACTCAGTATG+CGG - chr1.3:56549512-56549531 MS.gene43943:intron 45.0%
TAGATCTCTCGCCATTGCTT+GGG - chr1.3:56549229-56549248 MS.gene43943:intron 45.0%
TGGATCCAAGCTTGGTACAT+AGG - chr1.3:56549640-56549659 MS.gene43943:CDS 45.0%
TGTGTGTTTGGATCCAAGCT+TGG - chr1.3:56549632-56549651 MS.gene43943:CDS 45.0%
! GATAGATGGTGATTTGCCGA+AGG - chr1.3:56549830-56549849 MS.gene43943:CDS 45.0%
! GGTGAGAAAGAGAGCCTTTT+TGG + chr1.3:56548963-56548982 None:intergenic 45.0%
!! CATCCTGTGGACTTGTTAGT+TGG - chr1.3:56549579-56549598 MS.gene43943:intron 45.0%
!! GACTTGTTAGTTGGTGTCGA+AGG - chr1.3:56549588-56549607 MS.gene43943:intron 45.0%
!! GTGCGTTGGCTTGAAATTCA+TGG - chr1.3:56549468-56549487 MS.gene43943:intron 45.0%
AGATCTCTCGCCATTGCTTG+GGG - chr1.3:56549230-56549249 MS.gene43943:intron 50.0%
AGTAATTGGGGACAAGGCAC+AGG + chr1.3:56549505-56549524 None:intergenic 50.0%
ATCATCGTCACCCCAAGCAA+TGG + chr1.3:56549243-56549262 None:intergenic 50.0%
CGATGAATTGGGGGTCAGAA+CGG + chr1.3:56548895-56548914 None:intergenic 50.0%
CGGAGTGGTACGAGATAGTA+TGG + chr1.3:56548792-56548811 None:intergenic 50.0%
CTAAGCTTCTTCACGTGCGT+TGG - chr1.3:56549454-56549473 MS.gene43943:intron 50.0%
CTAGATCTCTCGCCATTGCT+TGG - chr1.3:56549228-56549247 MS.gene43943:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.3:56549753-56549772 MS.gene43943:CDS 50.0%
GTCCTTGTGTGAGACGTGAT+GGG - chr1.3:56549733-56549752 MS.gene43943:CDS 50.0%
TGCCAACGCTCCTACCAAAA+AGG - chr1.3:56548946-56548965 MS.gene43943:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.3:56549752-56549771 MS.gene43943:CDS 50.0%
TGTGGACTTCTACACCTTCG+AGG + chr1.3:56549797-56549816 None:intergenic 50.0%
! GATGATAGGGCGCTCAGATA+GGG + chr1.3:56548984-56549003 None:intergenic 50.0%
! TGATGATAGGGCGCTCAGAT+AGG + chr1.3:56548985-56549004 None:intergenic 50.0%
!! AGCCTTTTTGGTAGGAGCGT+TGG + chr1.3:56548951-56548970 None:intergenic 50.0%
!! TTTGGTAGGAGCGTTGGCAA+TGG + chr1.3:56548945-56548964 None:intergenic 50.0%
AGCGGCAGAACGGAATGTCT+TGG + chr1.3:56548843-56548862 None:intergenic 55.0%
CACCCATCACGTCTCACACA+AGG + chr1.3:56549738-56549757 None:intergenic 55.0%
CGTCCTTGTGTGAGACGTGA+TGG - chr1.3:56549732-56549751 MS.gene43943:CDS 55.0%
GCTGTGCCTGATTCCAGGTT+TGG - chr1.3:56549281-56549300 MS.gene43943:intron 55.0%
GGATTGCTGTGCCTGATTCC+AGG - chr1.3:56549276-56549295 MS.gene43943:intron 55.0%
! CTTGTGTGAGACGTGATGGG+TGG - chr1.3:56549736-56549755 MS.gene43943:CDS 55.0%
!! GTAGGAGCGTTGGCAATGGA+AGG + chr1.3:56548941-56548960 None:intergenic 55.0%
!! TGTGAGACGTGATGGGTGGT+TGG - chr1.3:56549740-56549759 MS.gene43943:CDS 55.0%
ATGGCGGCAATGCACCCTTC+CGG + chr1.3:56548773-56548792 None:intergenic 60.0%
CGTCGGAATCAGCGGCAGAA+CGG + chr1.3:56548853-56548872 None:intergenic 60.0%
!! GGAGCGTTGGCAATGGAAGG+AGG + chr1.3:56548938-56548957 None:intergenic 60.0%
CGTACCACTCCGGCTGACGT+CGG - chr1.3:56548800-56548819 MS.gene43943:CDS 65.0%
GAGAACCTGCCGACGTCAGC+CGG + chr1.3:56548812-56548831 None:intergenic 65.0%
TGACGTCGGCAGGTTCTCCG+TGG - chr1.3:56548814-56548833 MS.gene43943:CDS 65.0%
! CCAGACGGCGTCGGAATCAG+CGG + chr1.3:56548861-56548880 None:intergenic 65.0%
!! CCGCTGATTCCGACGCCGTC+TGG - chr1.3:56548858-56548877 MS.gene43943:CDS 70.0%
CCACTCCGGCTGACGTCGGC+AGG - chr1.3:56548804-56548823 MS.gene43943:CDS 75.0%
CCTGCCGACGTCAGCCGGAG+TGG + chr1.3:56548807-56548826 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56548737 56549902 56548737 ID=MS.gene43943
chr1.3 mRNA 56548737 56549902 56548737 ID=MS.gene43943.t1;Parent=MS.gene43943
chr1.3 exon 56549618 56549902 56549618 ID=MS.gene43943.t1.exon1;Parent=MS.gene43943.t1
chr1.3 CDS 56549618 56549902 56549618 ID=cds.MS.gene43943.t1;Parent=MS.gene43943.t1
chr1.3 exon 56549342 56549460 56549342 ID=MS.gene43943.t1.exon2;Parent=MS.gene43943.t1
chr1.3 CDS 56549342 56549460 56549342 ID=cds.MS.gene43943.t1;Parent=MS.gene43943.t1
chr1.3 exon 56548737 56549199 56548737 ID=MS.gene43943.t1.exon3;Parent=MS.gene43943.t1
chr1.3 CDS 56548737 56549199 56548737 ID=cds.MS.gene43943.t1;Parent=MS.gene43943.t1
Gene Sequence

>MS.gene43943

ATGCAAAACAGAATGGGAACGTTTGAAGAATTACCGGAAGGGTGCATTGCCGCCATACTATCTCGTACCACTCCGGCTGACGTCGGCAGGTTCTCCGTGGTTTCCAAGACATTCCGTTCTGCCGCTGATTCCGACGCCGTCTGGAATCATTTTCTCCGTTCTGACCCCCAATTCATCGACTTCATCATCTCACACTCTCCTCCTTCCATTGCCAACGCTCCTACCAAAAAGGCTCTCTTTCTCACCCTATCTGAGCGCCCTATCATCATCGACAATGCTCAAAAGGTATTCTTCTTTATAACCTCCTCCAATTTCTCGTATAATTGACAATTTGACTGTATAGTAAGAAAACACAGAGAGGGAGAAAATAGAAACTGAATTTAATTTTTGGATTTTGAAATGAAAATGCTAATAAATAAGTTATGTATATGTTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTATATGCTTGCTGCTAGATCTCTCGCCATTGCTTGGGGTGACGATGATCGATATTGCAAATGGATTGCTGTGCCTGATTCCAGGTTTGGTTATGCTTGAAACTATCAAAGTAACTTGTTAACTGAGAATCTTATCACAATCAATTACACTTGAAATGATTTTGTTACCCTTGGTTTACAACTTCCAAATTTTAGTCTCTATAAATACTCCATTTGTGTTGGATAGGTTCCCCAAAGTTGCTAAGCTTCTTCACGTGCGTTGGCTTGAAATTCATGGAAAGATAAACACCTGTGCCTTGTCCCCAATTACTCAGTATGCGGCTTATCTTGTGTTCAAGATGATTGCGGTATTTGGATTTGAGAATCATCCTGTGGACTTGTTAGTTGGTGTCGAAGGTAGCCATAGAAGCACTAAAATTGTGTGTTTGGATCCAAGCTTGGTACATAGGAACAAAGAACTAATATGGCTCCGTCTTTCTGGGACTAGTATGTCGCACAACAAAGTAGTAGGATTGCGACGTCCTTGTGTGAGACGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTTAATTTATGCCTCGAAGGTGTAGAAGTCCACATTAGTGTTATCGAGATAGATGGTGATTTGCCGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGACCTAAGGAAGACAATTGA
Protein sequence

>MS.gene43943.t1

MQNRMGTFEELPEGCIAAILSRTTPADVGRFSVVSKTFRSAADSDAVWNHFLRSDPQFIDFIISHSPPSIANAPTKKALFLTLSERPIIIDNAQKSFQLDRKSGKKCYMLAARSLAIAWGDDDRYCKWIAVPDSRFPKVAKLLHVRWLEIHGKINTCALSPITQYAAYLVFKMIAVFGFENHPVDLLVGVEGSHRSTKIVCLDPSLVHRNKELIWLRLSGTSMSHNKVVGLRRPCVRRDGWLEIEMGEFFNLCLEGVEVHISVIEIDGDLPKGNFFLEGIEVRPKEDN