AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006298

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006298.t1 MTR_1g100597 74.910 279 40 5 1 253 1 275 8.17e-138 389
MS.gene006298.t1 MTR_1g100613 82.500 240 16 3 20 233 5 244 3.24e-136 383
MS.gene006298.t1 MTR_1g079180 64.029 278 59 4 1 250 1 265 2.09e-115 331
MS.gene006298.t1 MTR_1g079370 64.493 276 61 5 1 250 1 265 4.51e-114 328
MS.gene006298.t1 MTR_1g079460 62.411 282 64 4 1 253 1 269 1.03e-111 322
MS.gene006298.t1 MTR_1g079230 61.786 280 76 5 1 253 1 276 3.50e-111 321
MS.gene006298.t1 MTR_1g079260 61.786 280 75 5 1 253 1 275 6.07e-110 318
MS.gene006298.t1 MTR_1g079850 60.417 288 75 6 1 253 1 284 1.94e-104 304
MS.gene006298.t1 MTR_3g006850 56.766 303 79 7 3 253 16 318 5.87e-101 296
MS.gene006298.t1 MTR_1g079200 59.431 281 66 6 1 250 1 264 7.09e-100 292
MS.gene006298.t1 MTR_1g079380 60.791 278 72 5 1 252 1 267 2.95e-99 291
MS.gene006298.t1 MTR_3g452600 56.934 274 81 5 4 253 10 270 1.68e-93 276
MS.gene006298.t1 MTR_1g079250 56.897 290 79 9 1 253 1 281 1.11e-90 270
MS.gene006298.t1 MTR_1g026510 53.425 292 91 8 1 253 1 286 1.43e-88 265
MS.gene006298.t1 MTR_2g079100 55.472 265 87 5 3 247 8 261 3.40e-85 255
MS.gene006298.t1 MTR_3g450990 51.379 290 88 6 4 253 10 286 2.20e-82 248
MS.gene006298.t1 MTR_1g079410 51.079 278 91 8 5 250 9 273 3.55e-76 232
MS.gene006298.t1 MTR_1g079350 48.057 283 106 8 1 250 1 275 3.48e-71 219
MS.gene006298.t1 MTR_1g079340 46.823 299 97 9 1 250 40 325 1.79e-65 206
MS.gene006298.t1 MTR_7g096300 51.765 255 85 7 1 230 1 242 4.70e-65 216
MS.gene006298.t1 MTR_1g079140 40.678 295 128 9 4 251 13 307 2.13e-58 188
MS.gene006298.t1 MTR_1g079400 41.379 290 103 8 5 250 13 279 7.65e-57 183
MS.gene006298.t1 MTR_1g078470 55.978 184 49 5 83 250 17 184 1.31e-54 174
MS.gene006298.t1 MTR_1g076870 67.164 134 38 3 103 230 2 135 2.61e-54 172
MS.gene006298.t1 MTR_7g112550 38.869 283 135 9 2 250 5 283 2.81e-50 166
MS.gene006298.t1 MTR_1g079240 52.381 189 54 4 77 250 12 179 1.07e-49 161
MS.gene006298.t1 MTR_1g083580 35.125 279 148 7 2 250 6 281 3.10e-46 155
MS.gene006298.t1 MTR_1g079210 64.463 121 42 1 104 223 7 127 1.86e-42 141
MS.gene006298.t1 MTR_7g112560 34.386 285 123 11 4 251 1 258 1.05e-39 138
MS.gene006298.t1 MTR_4g023570 32.847 274 120 7 4 250 1 237 2.24e-34 124
MS.gene006298.t1 MTR_7g096310 56.667 120 37 2 57 161 44 163 4.22e-34 121
MS.gene006298.t1 MTR_3g058640 55.263 114 38 1 102 215 6 106 6.09e-33 116
MS.gene006298.t1 MTR_1g079350 53.448 116 41 1 1 103 1 116 7.33e-32 117
MS.gene006298.t1 MTR_2g042540 49.618 131 51 4 1 117 1 130 1.25e-27 103
MS.gene006298.t1 MTR_1g078460 62.069 87 23 1 1 77 64 150 3.48e-27 102
MS.gene006298.t1 MTR_1g079130 39.791 191 82 7 91 250 1 189 1.20e-26 102
MS.gene006298.t1 MTR_1g079220 54.430 79 23 1 140 218 1 66 1.48e-17 75.1
MS.gene006298.t1 MTR_0113s0040 22.069 290 152 8 2 250 20 276 7.85e-12 64.3
MS.gene006298.t1 MTR_7g103380 21.329 286 160 9 6 249 21 283 8.10e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006298.t1 AT2G02360 37.868 272 126 8 4 249 14 268 1.33e-49 164
MS.gene006298.t1 AT2G02240 38.235 272 126 6 4 249 61 316 8.13e-45 153
MS.gene006298.t1 AT2G02340 37.993 279 127 8 4 249 36 301 1.51e-44 152
MS.gene006298.t1 AT2G02250 37.132 272 130 8 4 249 47 303 5.41e-43 148
MS.gene006298.t1 AT1G80110 38.060 268 127 8 6 249 3 255 3.34e-42 144
MS.gene006298.t1 AT1G09155 36.620 284 134 10 7 250 3 280 4.17e-40 140
MS.gene006298.t1 AT2G02230 32.143 308 148 8 4 253 32 336 4.62e-40 141
MS.gene006298.t1 AT2G02320 33.935 277 130 9 6 249 42 298 6.54e-38 135
MS.gene006298.t1 AT1G56240 35.000 280 142 9 7 249 4 280 4.03e-36 129
MS.gene006298.t1 AT1G56250 35.461 282 142 10 7 251 4 282 2.60e-35 127
MS.gene006298.t1 AT2G02350 31.655 278 143 9 2 249 22 282 1.85e-34 125
MS.gene006298.t1 AT2G02310 30.576 278 144 7 4 250 45 304 1.64e-30 115
MS.gene006298.t1 AT2G02300 31.655 278 129 11 4 250 34 281 1.11e-25 102
MS.gene006298.t1 AT5G24560 35.417 192 86 6 4 167 3 184 1.93e-23 94.4
MS.gene006298.t1 AT2G02350 31.126 151 86 4 103 249 29 165 1.23e-15 73.2

Find 71 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATATTGAGTATT+TGG 0.137691 1.1:+72489884 None:intergenic
CTAGATCTCTTGCCATTACT+TGG 0.259287 1.1:-72491252 MS.gene006298:CDS
TAGCACTAAAATTGTTTGTT+TGG 0.300698 1.1:-72489780 MS.gene006298:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.1:-72489632 MS.gene006298:CDS
CATTATCGACAATGGCAAAA+AGG 0.323000 1.1:-72491433 MS.gene006298:intron
AAGCTGCATATTGAGTATTT+GGG 0.339648 1.1:+72489885 None:intergenic
TTGCCATTGTCGATAATGAT+AGG 0.347824 1.1:+72491438 None:intergenic
GATCAGATAGGGCAAGATAA+AGG 0.356751 1.1:+72491463 None:intergenic
AGACGAAGTTTAGCAACTTC+GGG 0.364842 1.1:+72489956 None:intergenic
TGTAAATGCTCCTTCCAAAA+AGG 0.366929 1.1:-72491487 MS.gene006298:CDS
TATGAGTGTTATCGAGATAA+AGG 0.385187 1.1:-72489591 MS.gene006298:CDS
ATGTATACGAATTCCGCATT+TGG 0.390839 1.1:+72489755 None:intergenic
GAAAATGCAGAGCTTTCAAT+TGG 0.391080 1.1:-72491311 MS.gene006298:intron
TTCTCGAAGGAATAGAAGTT+AGG 0.399223 1.1:-72489544 MS.gene006298:CDS
TTCAAAATGATTGATTCCTA+TGG 0.400444 1.1:-72489854 MS.gene006298:CDS
TAATGATAGGTTGATCAGAT+AGG 0.414184 1.1:+72491451 None:intergenic
AGGTCAGATAACAGAGTAGT+AGG 0.418025 1.1:-72489701 MS.gene006298:CDS
CGGAGTCGTACGAGACAGTA+TGG 0.434692 1.1:+72491602 None:intergenic
TTATCTCGATAACACTCATA+TGG 0.435546 1.1:+72489594 None:intergenic
TAGATCTCTTGCCATTACTT+GGG 0.440419 1.1:-72491251 MS.gene006298:CDS
GTTGCTTAATTGTCTACCTT+AGG 0.444416 1.1:+72489521 None:intergenic
ATCAGATAGGGCAAGATAAA+GGG 0.457911 1.1:+72491464 None:intergenic
AAGACGAAGTTTAGCAACTT+CGG 0.467908 1.1:+72489955 None:intergenic
GAGAATCTACCGGCGTCAAC+CGG 0.472067 1.1:+72491582 None:intergenic
AGATCTCTTGCCATTACTTG+GGG 0.481635 1.1:-72491250 MS.gene006298:CDS
TAGGATTGCCGCGGCCTAGT+TGG 0.483978 1.1:-72489682 MS.gene006298:CDS
GATAGAGTCGACGTCGGAAT+CGG 0.497107 1.1:+72491530 None:intergenic
TCAAAATGATTGATTCCTAT+GGG 0.503514 1.1:-72489853 MS.gene006298:CDS
GTTGGAGAAGTGGTAGGTGG+TGG 0.510954 1.1:-72489664 MS.gene006298:CDS
GACAGGGTTTGAAGATTTAG+CGG 0.514285 1.1:-72491640 MS.gene006298:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.1:+72491551 None:intergenic
AGGAATAGAAGTTAGGCCTA+AGG 0.524720 1.1:-72489537 MS.gene006298:CDS
TAGGTGGTGGGAGATTGAGA+TGG 0.526412 1.1:-72489651 MS.gene006298:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.528126 1.1:-72489812 MS.gene006298:CDS
AGGTGGTGGGAGATTGAGAT+GGG 0.529389 1.1:-72489650 MS.gene006298:CDS
AATGATAGGTTGATCAGATA+GGG 0.535784 1.1:+72491452 None:intergenic
TTGGAGAAGTGGTAGGTGGT+GGG 0.536804 1.1:-72489663 MS.gene006298:CDS
GGGTTTGAAGATTTAGCGGA+AGG 0.539826 1.1:-72491636 MS.gene006298:CDS
CGTCGGAATCGGCGGCAGAA+AGG 0.543849 1.1:+72491541 None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.1:-72489932 MS.gene006298:CDS
CTTCCTGTAGATTTATCTGT+CGG 0.550684 1.1:-72489821 MS.gene006298:CDS
AAGGGCAATTTCTTTCTCGA+AGG 0.553494 1.1:-72489557 MS.gene006298:CDS
CACCTACCACTTCTCCAACT+AGG 0.555718 1.1:+72489668 None:intergenic
ACACCGACAGATAAATCTAC+AGG 0.556842 1.1:+72489818 None:intergenic
GATAAAGGCTGGCGAGACAA+AGG 0.558520 1.1:-72489576 MS.gene006298:CDS
ATAAAGGCTGGCGAGACAAA+GGG 0.561504 1.1:-72489575 MS.gene006298:CDS
CTAAACTTCGTCTTGTGTGG+TGG 0.562220 1.1:-72489946 MS.gene006298:CDS
TTGCTAAACTTCGTCTTGTG+TGG 0.565369 1.1:-72489949 MS.gene006298:CDS
AGAGTCGACGTCGGAATCGG+CGG 0.567587 1.1:+72491533 None:intergenic
CATACTGTCTCGTACGACTC+CGG 0.570766 1.1:-72491601 MS.gene006298:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.573301 1.1:-72489587 MS.gene006298:CDS
CCGCGGCCTAGTTGGAGAAG+TGG 0.590220 1.1:-72489674 MS.gene006298:CDS
CAACCTATCATTATCGACAA+TGG 0.600808 1.1:-72491441 MS.gene006298:CDS
AGCTGCATATTGAGTATTTG+GGG 0.601395 1.1:+72489886 None:intergenic
AGGAAGGTTCTCAAACCCAT+AGG 0.604433 1.1:+72489838 None:intergenic
GATCTCTTGCCATTACTTGG+GGG 0.605728 1.1:-72491249 MS.gene006298:intron
ATATTGAGTATTTGGGGACA+AGG 0.608473 1.1:+72489892 None:intergenic
TGTTTGTTTGGATCCAAATG+CGG 0.611023 1.1:-72489768 MS.gene006298:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.1:-72489931 MS.gene006298:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.618376 1.1:-72489809 MS.gene006298:CDS
CTAGTTGGAGAAGTGGTAGG+TGG 0.655061 1.1:-72489667 MS.gene006298:CDS
TTCGTATACATCAGAGACAG+AGG 0.658529 1.1:-72489743 MS.gene006298:CDS
CGTACGACTCCGGTTGACGC+CGG 0.662520 1.1:-72491591 MS.gene006298:CDS
GGCCTAGTTGGAGAAGTGGT+AGG 0.668040 1.1:-72489670 MS.gene006298:CDS
GACGAAGTTTAGCAACTTCG+GGG 0.672634 1.1:+72489957 None:intergenic
GGAAACGACAGAGAATCTAC+CGG 0.672922 1.1:+72491572 None:intergenic
ACAGAGTAGTAGGATTGCCG+CGG 0.680550 1.1:-72489691 MS.gene006298:CDS
CGACAGATAAATCTACAGGA+AGG 0.687255 1.1:+72489822 None:intergenic
CCACTTCTCCAACTAGGCCG+CGG 0.703895 1.1:+72489674 None:intergenic
TGAGACGATAGAGTCGACGT+CGG 0.756214 1.1:+72491524 None:intergenic
AGTCGTACGAGACAGTATGG+TGG 0.758050 1.1:+72491605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATGATTGTTTATCA+TGG + chr1.1:72490228-72490247 None:intergenic 15.0%
!! AAAATGAAGGGAAAAAAAAT+TGG + chr1.1:72490411-72490430 None:intergenic 20.0%
!! AATAAAAGTGAGAAAATGAA+GGG + chr1.1:72490423-72490442 None:intergenic 20.0%
!! ATATGAAACATTCAATGAAA+TGG + chr1.1:72490514-72490533 None:intergenic 20.0%
!! GAAGAAAAAAAAAGTTGAAA+AGG + chr1.1:72491145-72491164 None:intergenic 20.0%
!!! TTATCATTATCGATTTCATT+TGG - chr1.1:72490913-72490932 MS.gene006298:intron 20.0%
! AGGATTCATAACATCAAAAA+TGG + chr1.1:72491125-72491144 None:intergenic 25.0%
! CAATAAAAGTGAGAAAATGA+AGG + chr1.1:72490424-72490443 None:intergenic 25.0%
! CAATTCTTGTATTCTTATCT+CGG - chr1.1:72491166-72491185 MS.gene006298:intron 25.0%
! CTAGAGCTTAAAAAAATCAA+AGG + chr1.1:72490383-72490402 None:intergenic 25.0%
! GGAAATAATTTAGCTATCAT+TGG - chr1.1:72490934-72490953 MS.gene006298:intron 25.0%
! TAGCACTAAAATTGTTTGTT+TGG - chr1.1:72491388-72491407 MS.gene006298:intron 25.0%
!! ATTCATTGTTTTCTCATGTT+AGG - chr1.1:72489768-72489787 MS.gene006298:CDS 25.0%
!! TCAAAATGATTGATTCCTAT+GGG - chr1.1:72491315-72491334 MS.gene006298:intron 25.0%
!! TTCAAAATGATTGATTCCTA+TGG - chr1.1:72491314-72491333 MS.gene006298:intron 25.0%
!!! AAACAATTTTAGTGCTACTA+TGG + chr1.1:72491385-72491404 None:intergenic 25.0%
!!! CTTCATTTTCTCACTTTTAT+TGG - chr1.1:72490422-72490441 MS.gene006298:intron 25.0%
!!! CTTTGATTTTTTTAAGCTCT+AGG - chr1.1:72490381-72490400 MS.gene006298:intron 25.0%
!!! GAGTTGTTTCAAAGTTTTTT+TGG - chr1.1:72490990-72491009 MS.gene006298:intron 25.0%
AAAAAATGAGGAGAAAGTGA+GGG + chr1.1:72490745-72490764 None:intergenic 30.0%
AAGCTGCATATTGAGTATTT+GGG + chr1.1:72491286-72491305 None:intergenic 30.0%
AGAAAAGTTAAGATCAAACC+TGG + chr1.1:72489986-72490005 None:intergenic 30.0%
ATGCTAGATGTGTAAATTGA+CGG - chr1.1:72490076-72490095 MS.gene006298:intron 30.0%
TAAAAAGAGTTATCTGACAG+TGG + chr1.1:72490853-72490872 None:intergenic 30.0%
TAAGCTGCATATTGAGTATT+TGG + chr1.1:72491287-72491306 None:intergenic 30.0%
TACACATCTAGCATTCATAA+AGG + chr1.1:72490070-72490089 None:intergenic 30.0%
TATGAGTGTTATCGAGATAA+AGG - chr1.1:72491577-72491596 MS.gene006298:CDS 30.0%
TTATCTCGATAACACTCATA+TGG + chr1.1:72491577-72491596 None:intergenic 30.0%
TTGGGATTGAATAGTCTAAA+AGG + chr1.1:72490784-72490803 None:intergenic 30.0%
TTTAGACTATTCAATCCCAA+AGG - chr1.1:72490784-72490803 MS.gene006298:intron 30.0%
! GATTTTGCAATCGTTTGATA+AGG - chr1.1:72491447-72491466 MS.gene006298:CDS 30.0%
! GCATTTTCAATATACCCAAA+GGG + chr1.1:72489845-72489864 None:intergenic 30.0%
! TCATATGGACTTCATTTTCA+AGG + chr1.1:72491562-72491581 None:intergenic 30.0%
! TGCATTTTCAATATACCCAA+AGG + chr1.1:72489846-72489865 None:intergenic 30.0%
! TTACAATTCTCCTCATTTTC+TGG - chr1.1:72490355-72490374 MS.gene006298:intron 30.0%
! TTGTTTTCTCATGTTAGGTA+AGG - chr1.1:72489773-72489792 MS.gene006298:CDS 30.0%
!! AATGATAGGTTGATCAGATA+GGG + chr1.1:72489719-72489738 None:intergenic 30.0%
!! GTTAGTACTCTTTTGAAAGT+TGG - chr1.1:72491028-72491047 MS.gene006298:intron 30.0%
!! TAATGATAGGTTGATCAGAT+AGG + chr1.1:72489720-72489739 None:intergenic 30.0%
!!! CAAACATTTTTAGGTGTGTT+TGG - chr1.1:72490107-72490126 MS.gene006298:intron 30.0%
!!! GATTTTTTTAAGCTCTAGGT+TGG - chr1.1:72490385-72490404 MS.gene006298:intron 30.0%
!!! TTTCTCCTCATTTTTTCTTC+TGG - chr1.1:72490749-72490768 MS.gene006298:intron 30.0%
AAGACGAAGTTTAGCAACTT+CGG + chr1.1:72491216-72491235 None:intergenic 35.0%
AATGAACAATTCGCCAAGAA+AGG + chr1.1:72490491-72490510 None:intergenic 35.0%
ACAGAACAGACATTTGTGTT+TGG + chr1.1:72490328-72490347 None:intergenic 35.0%
AGACATTTGTGTTTGGATTG+AGG + chr1.1:72490321-72490340 None:intergenic 35.0%
AGATGAAAGTTTCCTTGATG+AGG + chr1.1:72490568-72490587 None:intergenic 35.0%
AGCTGCATATTGAGTATTTG+GGG + chr1.1:72491285-72491304 None:intergenic 35.0%
ATATTGAGTATTTGGGGACA+AGG + chr1.1:72491279-72491298 None:intergenic 35.0%
ATCAAAGGAACCAGAAAATG+AGG + chr1.1:72490368-72490387 None:intergenic 35.0%
ATCAGATAGGGCAAGATAAA+GGG + chr1.1:72489707-72489726 None:intergenic 35.0%
ATGAAAGTTTCCTTGATGAG+GGG + chr1.1:72490566-72490585 None:intergenic 35.0%
ATGTATACGAATTCCGCATT+TGG + chr1.1:72491416-72491435 None:intergenic 35.0%
CAACCTATCATTATCGACAA+TGG - chr1.1:72489727-72489746 MS.gene006298:CDS 35.0%
CATTATCGACAATGGCAAAA+AGG - chr1.1:72489735-72489754 MS.gene006298:CDS 35.0%
CATTGTTCTTTCTCCTTTCT+TGG - chr1.1:72490475-72490494 MS.gene006298:intron 35.0%
CTGCTAATAATAAGCCCTTT+GGG - chr1.1:72489828-72489847 MS.gene006298:CDS 35.0%
CTTCCTGTAGATTTATCTGT+CGG - chr1.1:72491347-72491366 MS.gene006298:intron 35.0%
GAAAAAATGAGGAGAAAGTG+AGG + chr1.1:72490746-72490765 None:intergenic 35.0%
GAAAATGCAGAGCTTTCAAT+TGG - chr1.1:72489857-72489876 MS.gene006298:CDS 35.0%
GACATTTGTGTTTGGATTGA+GGG + chr1.1:72490320-72490339 None:intergenic 35.0%
GATGAAAGTTTCCTTGATGA+GGG + chr1.1:72490567-72490586 None:intergenic 35.0%
GCAAGATGAAAAACAATGAG+AGG - chr1.1:72490590-72490609 MS.gene006298:intron 35.0%
GCTATCCAGAAGAAAAAATG+AGG + chr1.1:72490757-72490776 None:intergenic 35.0%
GTTAAAACATGCAAGAGAGA+AGG + chr1.1:72490456-72490475 None:intergenic 35.0%
TAGATCTCTTGCCATTACTT+GGG - chr1.1:72489917-72489936 MS.gene006298:CDS 35.0%
TGCTAGATGTGTAAATTGAC+GGG - chr1.1:72490077-72490096 MS.gene006298:intron 35.0%
TGTAAATGCTCCTTCCAAAA+AGG - chr1.1:72489681-72489700 MS.gene006298:CDS 35.0%
TGTTACAGAGGTTCAGATTT+GGG + chr1.1:72490820-72490839 None:intergenic 35.0%
TGTTTGTTTGGATCCAAATG+CGG - chr1.1:72491400-72491419 MS.gene006298:intron 35.0%
TTAAGATCAAACCTGGAATC+AGG + chr1.1:72489979-72489998 None:intergenic 35.0%
TTCTCGAAGGAATAGAAGTT+AGG - chr1.1:72491624-72491643 MS.gene006298:CDS 35.0%
TTGCCATTGTCGATAATGAT+AGG + chr1.1:72489733-72489752 None:intergenic 35.0%
TTGGGTGTATAGTTTCCTTT+GGG + chr1.1:72490802-72490821 None:intergenic 35.0%
TTTGGGTGTATAGTTTCCTT+TGG + chr1.1:72490803-72490822 None:intergenic 35.0%
! GGTCACACTCAAACATTTTT+AGG - chr1.1:72490098-72490117 MS.gene006298:intron 35.0%
!!! CATTTTTAGGTGTGTTTGGA+TGG - chr1.1:72490111-72490130 MS.gene006298:intron 35.0%
AAGGGCAATTTCTTTCTCGA+AGG - chr1.1:72491611-72491630 MS.gene006298:CDS 40.0%
ACACCGACAGATAAATCTAC+AGG + chr1.1:72491353-72491372 None:intergenic 40.0%
AGACGAAGTTTAGCAACTTC+GGG + chr1.1:72491215-72491234 None:intergenic 40.0%
AGATCTCTTGCCATTACTTG+GGG - chr1.1:72489918-72489937 MS.gene006298:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.1:72491631-72491650 MS.gene006298:CDS 40.0%
AGGTCAGATAACAGAGTAGT+AGG - chr1.1:72491467-72491486 MS.gene006298:CDS 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.1:72491581-72491600 MS.gene006298:CDS 40.0%
ATCTGAGTTCACACTGTTGA+TGG - chr1.1:72490532-72490551 MS.gene006298:intron 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.1:72491536-72491555 MS.gene006298:CDS 40.0%
ATTCCCGGTACAAGAGATAA+GGG + chr1.1:72490632-72490651 None:intergenic 40.0%
CGACAGATAAATCTACAGGA+AGG + chr1.1:72491349-72491368 None:intergenic 40.0%
CTAGATCTCTTGCCATTACT+TGG - chr1.1:72489916-72489935 MS.gene006298:CDS 40.0%
CTGTTACAGAGGTTCAGATT+TGG + chr1.1:72490821-72490840 None:intergenic 40.0%
GACAGGGTTTGAAGATTTAG+CGG - chr1.1:72489528-72489547 MS.gene006298:CDS 40.0%
GATCAGATAGGGCAAGATAA+AGG + chr1.1:72489708-72489727 None:intergenic 40.0%
GCTGCTAATAATAAGCCCTT+TGG - chr1.1:72489827-72489846 MS.gene006298:CDS 40.0%
GTACAAGAGATAAGGGCTAA+CGG + chr1.1:72490625-72490644 None:intergenic 40.0%
TTAGCCCTTATCTCTTGTAC+CGG - chr1.1:72490625-72490644 MS.gene006298:intron 40.0%
TTCGTATACATCAGAGACAG+AGG - chr1.1:72491425-72491444 MS.gene006298:intron 40.0%
TTGCTAAACTTCGTCTTGTG+TGG - chr1.1:72491219-72491238 MS.gene006298:intron 40.0%
TTTAGGTGTGTTTGGATGGA+GGG - chr1.1:72490115-72490134 MS.gene006298:intron 40.0%
! AAGAAAAGCCAGTTGATTCC+CGG + chr1.1:72490647-72490666 None:intergenic 40.0%
! AGATAAAGGGCCTTTTTGGA+AGG + chr1.1:72489694-72489713 None:intergenic 40.0%
! TATCTCGGCAACTTTTGTGT+TGG - chr1.1:72491181-72491200 MS.gene006298:intron 40.0%
!! TTTTAGGTGTGTTTGGATGG+AGG - chr1.1:72490114-72490133 MS.gene006298:intron 40.0%
AAATGAGGAGAAAGTGAGGG+AGG + chr1.1:72490742-72490761 None:intergenic 45.0%
AGGAAGGTTCTCAAACCCAT+AGG + chr1.1:72491333-72491352 None:intergenic 45.0%
ATAAAGGCTGGCGAGACAAA+GGG - chr1.1:72491593-72491612 MS.gene006298:CDS 45.0%
CTAAACTTCGTCTTGTGTGG+TGG - chr1.1:72491222-72491241 MS.gene006298:intron 45.0%
GAACCTCTGTAACAGTGATG+TGG - chr1.1:72490826-72490845 MS.gene006298:intron 45.0%
GACGAAGTTTAGCAACTTCG+GGG + chr1.1:72491214-72491233 None:intergenic 45.0%
GATCTCTTGCCATTACTTGG+GGG - chr1.1:72489919-72489938 MS.gene006298:CDS 45.0%
GATTCCCGGTACAAGAGATA+AGG + chr1.1:72490633-72490652 None:intergenic 45.0%
GGAAACGACAGAGAATCTAC+CGG + chr1.1:72489599-72489618 None:intergenic 45.0%
GGGTTTGAAGATTTAGCGGA+AGG - chr1.1:72489532-72489551 MS.gene006298:CDS 45.0%
GTTTCCTTGATGAGGGGAAT+AGG + chr1.1:72490560-72490579 None:intergenic 45.0%
TAGCAATCCAGTTCCAGTAG+CGG + chr1.1:72489954-72489973 None:intergenic 45.0%
TAGCCCTTATCTCTTGTACC+GGG - chr1.1:72490626-72490645 MS.gene006298:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr1.1:72490121-72490140 MS.gene006298:intron 45.0%
TTGTCATCACCCCCAAGTAA+TGG + chr1.1:72489931-72489950 None:intergenic 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - chr1.1:72490125-72490144 MS.gene006298:intron 45.0%
! GGCAAGATAAAGGGCCTTTT+TGG + chr1.1:72489698-72489717 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.1:72491356-72491375 MS.gene006298:intron 45.0%
ACAGAGTAGTAGGATTGCCG+CGG - chr1.1:72491477-72491496 MS.gene006298:CDS 50.0%
AGTCGTACGAGACAGTATGG+TGG + chr1.1:72489566-72489585 None:intergenic 50.0%
ATGACAACCGCTACTGGAAC+TGG - chr1.1:72489944-72489963 MS.gene006298:CDS 50.0%
CACCTACCACTTCTCCAACT+AGG + chr1.1:72491503-72491522 None:intergenic 50.0%
CATACTGTCTCGTACGACTC+CGG - chr1.1:72489567-72489586 MS.gene006298:CDS 50.0%
CTAGTTGGAGAAGTGGTAGG+TGG - chr1.1:72491501-72491520 MS.gene006298:CDS 50.0%
CTCTTGTACCGGGAATCAAC+TGG - chr1.1:72490636-72490655 MS.gene006298:intron 50.0%
GAAAGTGAGGGAGGCTGAAA+TGG + chr1.1:72490733-72490752 None:intergenic 50.0%
GATAAAGGCTGGCGAGACAA+AGG - chr1.1:72491592-72491611 MS.gene006298:CDS 50.0%
GATAGAGTCGACGTCGGAAT+CGG + chr1.1:72489641-72489660 None:intergenic 50.0%
GGACCACATCACTGTTACAG+AGG + chr1.1:72490832-72490851 None:intergenic 50.0%
GGATCCTATTCCCCTCATCA+AGG - chr1.1:72490553-72490572 MS.gene006298:intron 50.0%
GGATTGCTATGCCTGATTCC+AGG - chr1.1:72489965-72489984 MS.gene006298:intron 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr1.1:72490124-72490143 MS.gene006298:intron 50.0%
TGAGACGATAGAGTCGACGT+CGG + chr1.1:72489647-72489666 None:intergenic 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.1:72491237-72491256 MS.gene006298:intron 50.0%
TTGGAGAAGTGGTAGGTGGT+GGG - chr1.1:72491505-72491524 MS.gene006298:CDS 50.0%
TTGGATGGAGGGTTTAGGAG+GGG - chr1.1:72490126-72490145 MS.gene006298:intron 50.0%
! CGGCAACTTTTGTGTTGGAC+AGG - chr1.1:72491186-72491205 MS.gene006298:intron 50.0%
!! AGGTGGTGGGAGATTGAGAT+GGG - chr1.1:72491518-72491537 MS.gene006298:CDS 50.0%
!! TAGGTGGTGGGAGATTGAGA+TGG - chr1.1:72491517-72491536 MS.gene006298:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.1:72491359-72491378 MS.gene006298:intron 50.0%
CGGAGTCGTACGAGACAGTA+TGG + chr1.1:72489569-72489588 None:intergenic 55.0%
GAGAATCTACCGGCGTCAAC+CGG + chr1.1:72489589-72489608 None:intergenic 55.0%
GGCCTAGTTGGAGAAGTGGT+AGG - chr1.1:72491498-72491517 MS.gene006298:CDS 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.1:72489620-72489639 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.1:72491236-72491255 MS.gene006298:intron 55.0%
GTTGGAGAAGTGGTAGGTGG+TGG - chr1.1:72491504-72491523 MS.gene006298:CDS 55.0%
TGGATGGAGGGTTTAGGAGG+GGG - chr1.1:72490127-72490146 MS.gene006298:intron 55.0%
AGAGTCGACGTCGGAATCGG+CGG + chr1.1:72489638-72489657 None:intergenic 60.0%
CCACTTCTCCAACTAGGCCG+CGG + chr1.1:72491497-72491516 None:intergenic 60.0%
GGGGTGATGACAACCGCTAC+TGG - chr1.1:72489938-72489957 MS.gene006298:CDS 60.0%
TAGGATTGCCGCGGCCTAGT+TGG - chr1.1:72491486-72491505 MS.gene006298:CDS 60.0%
TGGAGGGTTTAGGAGGGGGA+CGG - chr1.1:72490131-72490150 MS.gene006298:intron 60.0%
CCGCGGCCTAGTTGGAGAAG+TGG - chr1.1:72491494-72491513 MS.gene006298:CDS 65.0%
CGTACGACTCCGGTTGACGC+CGG - chr1.1:72489577-72489596 MS.gene006298:CDS 65.0%
CGTCGGAATCGGCGGCAGAA+AGG + chr1.1:72489630-72489649 None:intergenic 65.0%
GGAGGGTTTAGGAGGGGGAC+GGG - chr1.1:72490132-72490151 MS.gene006298:intron 65.0%
GGTTTAGGAGGGGGACGGGA+GGG - chr1.1:72490136-72490155 MS.gene006298:intron 65.0%
GTTTAGGAGGGGGACGGGAG+GGG - chr1.1:72490137-72490156 MS.gene006298:intron 65.0%
GGGTTTAGGAGGGGGACGGG+AGG - chr1.1:72490135-72490154 MS.gene006298:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72489526 72491664 72489526 ID=MS.gene006298
chr1.1 mRNA 72489526 72491664 72489526 ID=MS.gene006298.t1;Parent=MS.gene006298
chr1.1 exon 72491434 72491664 72491434 ID=MS.gene006298.t1.exon1;Parent=MS.gene006298.t1
chr1.1 CDS 72491434 72491664 72491434 ID=cds.MS.gene006298.t1;Parent=MS.gene006298.t1
chr1.1 exon 72491250 72491323 72491250 ID=MS.gene006298.t1.exon2;Parent=MS.gene006298.t1
chr1.1 CDS 72491250 72491323 72491250 ID=cds.MS.gene006298.t1;Parent=MS.gene006298.t1
chr1.1 exon 72489526 72489982 72489526 ID=MS.gene006298.t1.exon3;Parent=MS.gene006298.t1
chr1.1 CDS 72489526 72489982 72489526 ID=cds.MS.gene006298.t1;Parent=MS.gene006298.t1
Gene Sequence

>MS.gene006298

ATGACAGGGTTTGAAGATTTAGCGGAAGGATGCATTGCCACCATACTGTCTCGTACGACTCCGGTTGACGCCGGTAGATTCTCTGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGACGTCGACTCTATCGTCTCACAGTCATCTTCAGTTGTAAATGCTCCTTCCAAAAAGGCCCTTTATCTTGCCCTATCTGATCAACCTATCATTATCGACAATGGCAAAAAGGTATCATCAGAATTCATTGTTTTCTCATGTTAGGTAAGGCTAAATCAGTGATTATTGATCATCATAATTCGCTGCTAATAATAAGCCCTTTGGGTATATTGAAAATGCAGAGCTTTCAATTGGACAGAAAGAGTGCAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTTGCCATTACTTGGGGGTGATGACAACCGCTACTGGAACTGGATTGCTATGCCTGATTCCAGGTTTGATCTTAACTTTTCTATTTGTTTTATTTTAATTGCGTTCATTAACTTAATTAACTCTTAATTGACATTTATCTGCACCTTTATGAATGCTAGATGTGTAAATTGACGGGTCACACTCAAACATTTTTAGGTGTGTTTGGATGGAGGGTTTAGGAGGGGGACGGGAGGGGAGAATTTACTTTTCATTTTTAAATTACGCACACTATGAAATATTTTTTAAAAAGTTAACATATTGCCATGATAAACAATCATATAATACTTCAATCACACTTAGTTTATTTTAAAAAAACATCTTACATAATCTGTAATTTAAAAAAGAAAAGTAAACCCTCAATCCAAACACAAATGTCTGTTCTGTTTCTCTCTTACAATTCTCCTCATTTTCTGGTTCCTTTGATTTTTTTAAGCTCTAGGTTGGCCAATTTTTTTTCCCTTCATTTTCTCACTTTTATTGGTTTCTTTACCTTCTCTCTTGCATGTTTTAACATTGTTCTTTCTCCTTTCTTGGCGAATTGTTCATTCCATTTCATTGAATGTTTCATATCTGAGTTCACACTGTTGATGGATCCTATTCCCCTCATCAAGGAAACTTTCATCTATGCAAGATGAAAAACAATGAGAGGTTGAATATGCCGTTAGCCCTTATCTCTTGTACCGGGAATCAACTGGCTTTTCTTCTATGAAAGATGAAAAAACATGAGAAGTTGAATATGCATAAAGAAGTTAAATGAAAATATTTTCCATTTCAGCCTCCCTCACTTTCTCCTCATTTTTTCTTCTGGATAGCACTTCCTTTTAGACTATTCAATCCCAAAGGAAACTATACACCCAAATCTGAACCTCTGTAACAGTGATGTGGTCCACTGTCAGATAACTCTTTTTATAGATAACAAACGATATAACTAACTTATTAAATGAGAAGTTTATCATTATCGATTTCATTTGGAAATAATTTAGCTATCATTGGTACAATATATGATAATTGATGTTTTTATTAGTTGAGTTGTTTCAAAGTTTTTTTGGTAAAAATATTTTGCTGTTAGTACTCTTTTGAAAGTTGGAAACTTCGATTCAACTTTGAAATTTTAGTTGATGAGCTTGCATTGTTAGTATATCTACATGTATAAATATTCCATTTTTGATGTTATGAATCCTTTTCAACTTTTTTTTTCTTCTCAATTCTTGTATTCTTATCTCGGCAACTTTTGTGTTGGACAGGTTCCCCGAAGTTGCTAAACTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTTCCTTGTCCCCAAATACTCAATATGCAGCTTATCTTGTGTTCAAAATGATTGATTCCTATGGGTTTGAGAACCTTCCTGTAGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTTTGTTTGGATCCAAATGCGGAATTCGTATACATCAGAGACAGAGGATTTTGCAATCGTTTGATAAGGTCAGATAACAGAGTAGTAGGATTGCCGCGGCCTAGTTGGAGAAGTGGTAGGTGGTGGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGTCCATATGAGTGTTATCGAGATAAAGGCTGGCGAGACAAAGGGCAATTTCTTTCTCGAAGGAATAGAAGTTAGGCCTAAGGTAGACAATTAA
Protein sequence

>MS.gene006298.t1

MTGFEDLAEGCIATILSRTTPVDAGRFSVVSKTFLSAADSDVDSIVSQSSSVVNAPSKKALYLALSDQPIIIDNGKKSFQLDRKSAKKCYMLAARSLAITWGFPEVAKLRLVWWLEIRGMINNLSLSPNTQYAAYLVFKMIDSYGFENLPVDLSVGVEGGHSSTKIVCLDPNAEFVYIRDRGFCNRLIRSDNRVVGLPRPSWRSGRWWEIEMGEFFNSGLENEVHMSVIEIKAGETKGNFFLEGIEVRPKVDN