AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24084.t1 MTR_1g026510 97.010 301 9 0 1 301 1 301 0.0 605
MS.gene24084.t1 MTR_1g079250 73.754 301 74 1 1 301 1 296 1.13e-161 452
MS.gene24084.t1 MTR_1g079260 63.986 286 92 4 1 286 1 275 6.50e-128 365
MS.gene24084.t1 MTR_1g079180 62.898 283 87 6 1 283 1 265 1.43e-115 334
MS.gene24084.t1 MTR_1g079460 61.888 286 92 5 1 286 1 269 5.86e-113 327
MS.gene24084.t1 MTR_1g079370 58.657 283 99 6 1 283 1 265 1.28e-109 319
MS.gene24084.t1 MTR_1g079200 60.777 283 92 5 1 283 1 264 4.67e-109 317
MS.gene24084.t1 MTR_1g100597 61.246 289 95 8 1 286 1 275 1.49e-108 317
MS.gene24084.t1 MTR_1g079380 55.705 298 113 7 1 297 1 280 3.75e-100 296
MS.gene24084.t1 MTR_3g006850 53.548 310 113 5 2 286 15 318 3.83e-99 294
MS.gene24084.t1 MTR_1g079850 54.949 293 116 6 1 286 1 284 2.85e-97 288
MS.gene24084.t1 MTR_1g079230 53.425 292 114 6 1 286 1 276 3.88e-95 282
MS.gene24084.t1 MTR_3g452600 54.225 284 106 7 4 286 10 270 9.85e-91 271
MS.gene24084.t1 MTR_1g079350 52.962 287 119 7 1 283 1 275 6.08e-90 269
MS.gene24084.t1 MTR_1g100613 56.911 246 90 5 20 260 5 239 3.51e-85 256
MS.gene24084.t1 MTR_3g450990 50.667 300 108 10 4 286 10 286 1.30e-81 248
MS.gene24084.t1 MTR_2g079100 48.789 289 120 7 3 289 8 270 4.50e-77 236
MS.gene24084.t1 MTR_1g079410 46.154 286 132 8 3 284 7 274 4.77e-74 228
MS.gene24084.t1 MTR_7g096300 51.087 276 109 7 1 273 1 253 2.31e-73 239
MS.gene24084.t1 MTR_1g079340 46.230 305 123 9 1 283 40 325 8.88e-71 222
MS.gene24084.t1 MTR_1g079140 41.667 300 149 5 4 283 13 306 3.40e-67 212
MS.gene24084.t1 MTR_1g079400 40.816 294 134 9 4 283 12 279 1.23e-58 189
MS.gene24084.t1 MTR_1g078470 56.383 188 62 6 96 283 17 184 1.54e-56 181
MS.gene24084.t1 MTR_7g112550 38.754 289 152 11 7 284 10 284 3.00e-54 178
MS.gene24084.t1 MTR_1g083580 38.225 293 149 11 4 283 8 281 6.83e-54 177
MS.gene24084.t1 MTR_1g079240 48.705 193 73 5 91 283 13 179 8.49e-46 153
MS.gene24084.t1 MTR_1g079350 59.420 138 49 2 1 136 1 133 1.01e-45 154
MS.gene24084.t1 MTR_7g112560 33.803 284 157 8 4 283 1 257 1.85e-42 147
MS.gene24084.t1 MTR_1g076870 54.745 137 47 4 136 261 2 134 1.04e-39 136
MS.gene24084.t1 MTR_4g023570 31.915 282 145 9 4 283 1 237 6.83e-36 129
MS.gene24084.t1 MTR_2g042540 59.813 107 40 2 1 106 1 105 1.94e-35 125
MS.gene24084.t1 MTR_1g079130 38.974 195 98 4 104 283 1 189 8.05e-34 122
MS.gene24084.t1 MTR_1g078460 60.674 89 32 1 1 89 64 149 1.42e-30 112
MS.gene24084.t1 MTR_7g096310 46.309 149 61 4 58 196 24 163 1.06e-29 111
MS.gene24084.t1 MTR_1g079210 50.794 126 53 4 137 256 7 129 3.56e-27 103
MS.gene24084.t1 MTR_3g058640 48.649 111 46 3 136 246 7 106 1.60e-22 90.5
MS.gene24084.t1 MTR_1g079220 54.545 77 24 3 173 249 1 66 2.73e-17 75.5
MS.gene24084.t1 MTR_1g079390 67.308 52 14 2 227 278 7 55 5.64e-14 65.9
MS.gene24084.t1 MTR_4g083970 27.461 193 102 8 94 283 133 290 5.72e-12 65.5
MS.gene24084.t1 MTR_7g103380 22.776 281 199 7 6 284 21 285 1.52e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24084.t1 AT2G02250 37.993 279 151 7 4 282 47 303 2.45e-55 182
MS.gene24084.t1 AT1G80110 39.350 277 142 6 7 282 4 255 9.48e-55 179
MS.gene24084.t1 AT2G02240 34.982 283 161 7 4 286 61 320 1.07e-52 175
MS.gene24084.t1 AT2G02360 35.943 281 152 6 4 282 14 268 1.54e-52 173
MS.gene24084.t1 AT2G02230 32.808 317 167 8 4 286 32 336 8.91e-50 168
MS.gene24084.t1 AT1G09155 36.678 289 160 9 7 283 3 280 1.43e-46 158
MS.gene24084.t1 AT2G02340 34.138 290 162 8 1 282 33 301 1.32e-45 156
MS.gene24084.t1 AT1G56240 34.722 288 165 8 7 282 4 280 4.92e-45 154
MS.gene24084.t1 AT2G02350 32.192 292 174 6 2 291 22 291 1.77e-44 153
MS.gene24084.t1 AT1G56250 35.294 289 164 8 7 283 4 281 1.59e-43 150
MS.gene24084.t1 AT2G02300 31.034 290 154 10 2 284 32 282 9.36e-37 133
MS.gene24084.t1 AT2G02310 31.095 283 171 7 4 284 45 305 2.08e-36 132
MS.gene24084.t1 AT2G02320 31.119 286 159 10 6 282 42 298 1.30e-34 127
MS.gene24084.t1 AT5G24560 42.208 154 78 3 4 157 3 145 6.87e-30 112
MS.gene24084.t1 AT2G02350 30.000 190 115 5 104 291 1 174 5.85e-20 85.5
MS.gene24084.t1 AT3G53000 23.920 301 182 12 6 290 23 292 4.48e-15 74.7
MS.gene24084.t1 AT1G33920 27.419 186 97 7 103 283 12 164 1.21e-11 62.4
MS.gene24084.t1 AT4G19850 28.426 197 94 8 97 283 17 176 2.09e-11 62.0
MS.gene24084.t1 AT4G19850 29.442 197 92 9 97 283 59 218 2.59e-11 62.8

Find 91 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTACCAAAATGACAATTT+TGG 0.213350 1.2:-20959 None:intergenic
ATGGTTGATGGCTTTGGTTT+TGG 0.220885 1.2:+20880 MS.gene24084:CDS
TAGAACCAAAATTGTCATTT+TGG 0.238661 1.2:+20954 MS.gene24084:CDS
CCGCCGACTCCGATGAAATC+TGG 0.286656 1.2:+19502 MS.gene24084:CDS
GCTGCTAGATCTCTCTCTTT+AGG 0.290498 1.2:+19790 MS.gene24084:CDS
TAGGCTGGGCCGGCGTTGCT+TGG 0.291939 1.2:+19809 MS.gene24084:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.292340 1.2:+21090 MS.gene24084:CDS
GAAGTCCAAATGAGTATTAC+TGG 0.304926 1.2:+21126 MS.gene24084:CDS
TTAAGAATCTCAACAACTTC+AGG 0.315871 1.2:-20772 None:intergenic
TAAGTTGCATATGTAGTATT+CGG 0.322872 1.2:-20844 None:intergenic
TATTGATTATTATCTTCCTT+TGG 0.333817 1.2:-21207 None:intergenic
TTATCCCAGTAATACTCATT+TGG 0.337010 1.2:-21131 None:intergenic
GAGAGCCTGCCGACGTCAAC+AGG 0.341542 1.2:-19453 None:intergenic
GGCGAGATAGAATGCTCTTT+TGG 0.351997 1.2:-19601 None:intergenic
CACCCATCACTTCTCATTCT+AGG 0.353018 1.2:-21054 None:intergenic
AATGGGAGCGTTTGAAGAAT+TGG 0.354251 1.2:+19392 None:intergenic
GGACTTCTATGTCGGATTCC+AGG 0.358513 1.2:+19857 MS.gene24084:CDS
AATCAATATAAACTAAACTA+TGG 0.359047 1.2:+21222 MS.gene24084:CDS
AATGAGTATTACTGGGATAA+AGG 0.362381 1.2:+21134 MS.gene24084:CDS
ATCCGCCTACATTTCACGTT+TGG 0.365825 1.2:-20982 None:intergenic
AGGCGGATCAACAAAATATT+AGG 0.370152 1.2:+20997 MS.gene24084:CDS
TTCAAGATGGTTGATGGCTT+TGG 0.374603 1.2:+20874 MS.gene24084:CDS
CTAGATCTCTCTCTTTAGGC+TGG 0.381827 1.2:+19794 MS.gene24084:CDS
AAGTTGCATATGTAGTATTC+GGG 0.388989 1.2:-20843 None:intergenic
CTTGTGTTCAAGATGGTTGA+TGG 0.390765 1.2:+20868 MS.gene24084:CDS
TTGTTGAAGGAATAGAAGTT+AGG 0.402827 1.2:+21184 MS.gene24084:CDS
AGGCTGGGCCGGCGTTGCTT+GGG 0.405783 1.2:+19810 MS.gene24084:CDS
CAACAAAATATTAGGTAGTC+AGG 0.424037 1.2:+21005 MS.gene24084:CDS
AAGAGAGGTTTCTTTGTTGA+AGG 0.432696 1.2:+21171 MS.gene24084:CDS
GCGAGTGAGGATAGGATGAT+TGG 0.443568 1.2:-19628 None:intergenic
CGCCGACTCCGATGAAATCT+GGG 0.449269 1.2:+19503 MS.gene24084:CDS
GATGATATCGGCTATGAGTT+GGG 0.450854 1.2:-19547 None:intergenic
TATCCTGTGGAATTATCGTT+TGG 0.462656 1.2:+20913 MS.gene24084:CDS
CGACTCCTGTTGACGTCGGC+AGG 0.489769 1.2:+19448 MS.gene24084:CDS
CCTCACTCGCGATGGTCGAA+TGG 0.491341 1.2:+19641 MS.gene24084:CDS
TATGGAAGGGTCTTGTGTCT+TGG 0.493873 1.2:+21240 MS.gene24084:CDS
AGGAAACTGTGAGATGATAT+CGG 0.495713 1.2:-19559 None:intergenic
CGACCTAGAATGAGAAGTGA+TGG 0.501558 1.2:+21051 MS.gene24084:CDS
TAAGAATCTCAACAACTTCA+GGG 0.504579 1.2:-20771 None:intergenic
AATATAAACTAAACTATGGA+AGG 0.504836 1.2:+21226 MS.gene24084:CDS
CGACCATCGCGAGTGAGGAT+AGG 0.506878 1.2:-19636 None:intergenic
GTGTGTCGGCTTAAAATTCG+TGG 0.509079 1.2:+20796 MS.gene24084:CDS
GATGGTTATACTTGGAAGAG+AGG 0.511922 1.2:+21156 MS.gene24084:CDS
GGGTGGTTGGAGACTGAGAT+GGG 0.516205 1.2:+21072 MS.gene24084:CDS
GTGGGAGCGTTGGCGAGGGA+AGG 0.519021 1.2:-19579 None:intergenic
GGCGGCAGAACGGAAAGTCT+TGG 0.522635 1.2:-19484 None:intergenic
GAATTATCGTTTGGTGTAGC+AGG 0.528065 1.2:+20922 MS.gene24084:CDS
TTGAGATTCTTAATGTGTGT+CGG 0.528788 1.2:+20782 MS.gene24084:CDS
TAGATCTCTCTCTTTAGGCT+GGG 0.531709 1.2:+19795 MS.gene24084:CDS
AACTTATCTTGTGTTCAAGA+TGG 0.537321 1.2:+20861 MS.gene24084:CDS
GGATAAAGGATGGTTATACT+TGG 0.541442 1.2:+21148 MS.gene24084:CDS
ATCGGCTATGAGTTGGGGAT+CGG 0.541544 1.2:-19541 None:intergenic
AGTATTCGGGGACAAGGCAC+GGG 0.541568 1.2:-20830 None:intergenic
ATTTATGCAGAGCGTTCAGT+TGG 0.543756 1.2:+19735 MS.gene24084:intron
AGTATTACTGGGATAAAGGA+TGG 0.544593 1.2:+21138 MS.gene24084:CDS
TAGTATTCGGGGACAAGGCA+CGG 0.547315 1.2:-20831 None:intergenic
TCTCTCTCTTTAGGCTGGGC+CGG 0.548467 1.2:+19799 MS.gene24084:CDS
GAGGATAGGATGATTGGAGA+GGG 0.548862 1.2:-19622 None:intergenic
AAAATCTTCCCAAGCAACGC+CGG 0.549348 1.2:-19818 None:intergenic
AATGAGAAGTGATGGGTGGT+TGG 0.556049 1.2:+21059 MS.gene24084:CDS
AGGAGTCGTACGACAGAGTA+CGG 0.558822 1.2:-19433 None:intergenic
TAGATCCAAACGTGAAATGT+AGG 0.559418 1.2:+20977 MS.gene24084:CDS
GGGAGCGTTTGAAGAATTGG+CGG 0.565646 1.2:+19395 MS.gene24084:CDS
ATCCCAGATTTCATCGGAGT+CGG 0.571899 1.2:-19505 None:intergenic
AGATGATATCGGCTATGAGT+TGG 0.577378 1.2:-19548 None:intergenic
CATCGGAGTCGGCGGCAGAA+CGG 0.577973 1.2:-19494 None:intergenic
CCATTCGACCATCGCGAGTG+AGG 0.580123 1.2:-19641 None:intergenic
TTTGGTGGGAGCGTTGGCGA+GGG 0.580470 1.2:-19583 None:intergenic
TCGTAACTGGACTTCTATGT+CGG 0.583353 1.2:+19849 MS.gene24084:CDS
GCGTTTGAAGAATTGGCGGA+AGG 0.584683 1.2:+19399 MS.gene24084:CDS
TGGGTGGTTGGAGACTGAGA+TGG 0.588372 1.2:+21071 MS.gene24084:CDS
GAAGGGTCTTGTGTCTTGGA+TGG 0.589989 1.2:+21244 MS.gene24084:CDS
AGGAATAGAAGTTAGGCCAA+AGG 0.594471 1.2:+21191 MS.gene24084:CDS
ATGATATCGGCTATGAGTTG+GGG 0.603766 1.2:-19546 None:intergenic
AAGTCCAAATGAGTATTACT+GGG 0.610733 1.2:+21127 MS.gene24084:CDS
ATATGTAGTATTCGGGGACA+AGG 0.615096 1.2:-20836 None:intergenic
AAAACGATCCCAGATTTCAT+CGG 0.615581 1.2:-19511 None:intergenic
ACACCAAACGATAATTCCAC+AGG 0.625699 1.2:-20916 None:intergenic
ATATAAACTAAACTATGGAA+GGG 0.626520 1.2:+21227 MS.gene24084:CDS
CATCCTATCCTCACTCGCGA+TGG 0.630150 1.2:+19633 MS.gene24084:CDS
TTATCGTTTGGTGTAGCAGG+TGG 0.634867 1.2:+20925 MS.gene24084:CDS
GTTCAGTTGGATAGAAAGAG+TGG 0.637141 1.2:+19748 MS.gene24084:CDS
CCAGATTTCATCGGAGTCGG+CGG 0.638496 1.2:-19502 None:intergenic
GACCTAGAATGAGAAGTGAT+GGG 0.647775 1.2:+21052 MS.gene24084:CDS
TGAGGATAGGATGATTGGAG+AGG 0.662214 1.2:-19623 None:intergenic
TGGGGTGAAGAACTATCCTG+TGG 0.664342 1.2:+20900 MS.gene24084:CDS
ATCCAAACGTGAAATGTAGG+CGG 0.671536 1.2:+20980 MS.gene24084:CDS
AGTTGCATATGTAGTATTCG+GGG 0.713654 1.2:-20842 None:intergenic
CTAGAATGAGAAGTGATGGG+TGG 0.757147 1.2:+21055 MS.gene24084:CDS
CGTACGACTCCTGTTGACGT+CGG 0.771940 1.2:+19444 MS.gene24084:CDS
AGTCGTACGACAGAGTACGG+CGG 0.815749 1.2:-19430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATATAAACTAAACTA+TGG + chr1.2:21222-21241 MS.gene24084:CDS 15.0%
!! TAAGTAAAAAAATGAATGTT+AGG - chr1.2:20122-20141 None:intergenic 15.0%
!! TTGAATAAAGATAGATAAAT+TGG - chr1.2:19691-19710 None:intergenic 15.0%
!!! TTTGTTTTGATTCAAAATTT+GGG + chr1.2:20359-20378 MS.gene24084:intron 15.0%
!!! TTTTGTTTTGATTCAAAATT+TGG + chr1.2:20358-20377 MS.gene24084:intron 15.0%
!! AATATAAACTAAACTATGGA+AGG + chr1.2:21226-21245 MS.gene24084:CDS 20.0%
!! ATATAAACTAAACTATGGAA+GGG + chr1.2:21227-21246 MS.gene24084:CDS 20.0%
!! ATGCAAATATTCTAAACTAT+GGG - chr1.2:20522-20541 None:intergenic 20.0%
!!! GTTTTTTGTATTCTTATCTT+GGG + chr1.2:20718-20737 MS.gene24084:intron 20.0%
!!! TAATTTTTGTGCACAAATTT+TGG + chr1.2:20741-20760 MS.gene24084:intron 20.0%
!!! TATTACGTTATTTTATCTAC+CGG + chr1.2:20050-20069 MS.gene24084:intron 20.0%
!!! TATTGATTATTATCTTCCTT+TGG - chr1.2:21210-21229 None:intergenic 20.0%
! CACATAATAGAAAAGTTAAG+AGG - chr1.2:19886-19905 None:intergenic 25.0%
! GATGCAAATATTCTAAACTA+TGG - chr1.2:20523-20542 None:intergenic 25.0%
! GGTAGATAAAATAACGTAAT+AGG - chr1.2:20051-20070 None:intergenic 25.0%
! TAAGTTGCATATGTAGTATT+CGG - chr1.2:20847-20866 None:intergenic 25.0%
! TTTAACACCCTTTAGATTTA+TGG + chr1.2:20686-20705 MS.gene24084:intron 25.0%
!! ATCTACCAAAATGACAATTT+TGG - chr1.2:20962-20981 None:intergenic 25.0%
!! TTTTGTTACACAAACCTTTT+TGG + chr1.2:20399-20418 MS.gene24084:intron 25.0%
!!! CATGCTTACTCATTTAATTT+TGG - chr1.2:20584-20603 None:intergenic 25.0%
!!! GGTTTTTTGTATTCTTATCT+TGG + chr1.2:20717-20736 MS.gene24084:intron 25.0%
!!! TAGAACCAAAATTGTCATTT+TGG + chr1.2:20954-20973 MS.gene24084:CDS 25.0%
AACTTATCTTGTGTTCAAGA+TGG + chr1.2:20861-20880 MS.gene24084:CDS 30.0%
AAGTCCAAATGAGTATTACT+GGG + chr1.2:21127-21146 MS.gene24084:CDS 30.0%
AAGTTGCATATGTAGTATTC+GGG - chr1.2:20846-20865 None:intergenic 30.0%
AATGAGTATTACTGGGATAA+AGG + chr1.2:21134-21153 MS.gene24084:CDS 30.0%
AGTGAAAGCCATAAATCTAA+AGG - chr1.2:20697-20716 None:intergenic 30.0%
ATGATGCTAGATTCAAATCA+TGG - chr1.2:19959-19978 None:intergenic 30.0%
CAACAAAATATTAGGTAGTC+AGG + chr1.2:21005-21024 MS.gene24084:CDS 30.0%
GTGAAAGCCATAAATCTAAA+GGG - chr1.2:20696-20715 None:intergenic 30.0%
GTTAGGAAATTGTGAATTCA+TGG - chr1.2:20105-20124 None:intergenic 30.0%
TAAGAATCTCAACAACTTCA+GGG - chr1.2:20774-20793 None:intergenic 30.0%
TCCTAGAATGTTTGATGAAA+AGG + chr1.2:20426-20445 MS.gene24084:intron 30.0%
TTAAGAATCTCAACAACTTC+AGG - chr1.2:20775-20794 None:intergenic 30.0%
TTATCCCAGTAATACTCATT+TGG - chr1.2:21134-21153 None:intergenic 30.0%
TTGAGATTCTTAATGTGTGT+CGG + chr1.2:20782-20801 MS.gene24084:CDS 30.0%
TTGTTGAAGGAATAGAAGTT+AGG + chr1.2:21184-21203 MS.gene24084:CDS 30.0%
TTTAGATTTATGGCTTTCAC+TGG + chr1.2:20696-20715 MS.gene24084:intron 30.0%
! ATCAGTTTGAAGTTGAATGA+AGG - chr1.2:19995-20014 None:intergenic 30.0%
! ATTTTGAGCAAAATCGTAAC+TGG + chr1.2:19836-19855 MS.gene24084:CDS 30.0%
! TAAAGTATCACAATGTACTC+AGG + chr1.2:20151-20170 MS.gene24084:intron 30.0%
! TCCTTTTCATCAAACATTCT+AGG - chr1.2:20430-20449 None:intergenic 30.0%
AAAACGATCCCAGATTTCAT+CGG - chr1.2:19514-19533 None:intergenic 35.0%
AAGAGAGGTTTCTTTGTTGA+AGG + chr1.2:21171-21190 MS.gene24084:CDS 35.0%
AGAAAAGTTAAGAGGAAACC+TGG - chr1.2:19878-19897 None:intergenic 35.0%
AGGAAACTGTGAGATGATAT+CGG - chr1.2:19562-19581 None:intergenic 35.0%
AGGCGGATCAACAAAATATT+AGG + chr1.2:20997-21016 MS.gene24084:CDS 35.0%
AGTATTACTGGGATAAAGGA+TGG + chr1.2:21138-21157 MS.gene24084:CDS 35.0%
AGTTGCATATGTAGTATTCG+GGG - chr1.2:20845-20864 None:intergenic 35.0%
CAATACATATGCAATGCTTC+GGG - chr1.2:20549-20568 None:intergenic 35.0%
CCAATACATATGCAATGCTT+CGG - chr1.2:20550-20569 None:intergenic 35.0%
GAAGTCCAAATGAGTATTAC+TGG + chr1.2:21126-21145 MS.gene24084:CDS 35.0%
GGATAAAGGATGGTTATACT+TGG + chr1.2:21148-21167 MS.gene24084:CDS 35.0%
TAGATCCAAACGTGAAATGT+AGG + chr1.2:20977-20996 MS.gene24084:CDS 35.0%
TATCCTGTGGAATTATCGTT+TGG + chr1.2:20913-20932 MS.gene24084:CDS 35.0%
TGTAGGCACTTGAACAAAAA+GGG - chr1.2:20283-20302 None:intergenic 35.0%
TTGAAGTTGAATGAAGGAAC+TGG - chr1.2:19989-20008 None:intergenic 35.0%
! AGATAGAATGCTCTTTTGGT+GGG - chr1.2:19600-19619 None:intergenic 35.0%
! TTTGTGCACAAATTTTGGAC+AGG + chr1.2:20746-20765 MS.gene24084:intron 35.0%
!! AAACTTGTTAGAAAGCACTG+AGG - chr1.2:20341-20360 None:intergenic 35.0%
!! AACTTGTTAGAAAGCACTGA+GGG - chr1.2:20340-20359 None:intergenic 35.0%
ACACCAAACGATAATTCCAC+AGG - chr1.2:20919-20938 None:intergenic 40.0%
AGGAATAGAAGTTAGGCCAA+AGG + chr1.2:21191-21210 MS.gene24084:CDS 40.0%
ATATGTAGTATTCGGGGACA+AGG - chr1.2:20839-20858 None:intergenic 40.0%
ATCCAAACGTGAAATGTAGG+CGG + chr1.2:20980-20999 MS.gene24084:CDS 40.0%
ATGGGAGAGTTCTTCAATTC+AGG + chr1.2:21090-21109 MS.gene24084:CDS 40.0%
ATGGGTCTAAGAAGAACAAG+AGG - chr1.2:20504-20523 None:intergenic 40.0%
CACACACACACACACAATAA+AGG - chr1.2:20463-20482 None:intergenic 40.0%
CTGTAGGCACTTGAACAAAA+AGG - chr1.2:20284-20303 None:intergenic 40.0%
CTTGTGTTCAAGATGGTTGA+TGG + chr1.2:20868-20887 MS.gene24084:CDS 40.0%
GACCTAGAATGAGAAGTGAT+GGG + chr1.2:21052-21071 MS.gene24084:CDS 40.0%
GATGGTTATACTTGGAAGAG+AGG + chr1.2:21156-21175 MS.gene24084:CDS 40.0%
GGCATAAACTTAGTAGCCTT+AGG - chr1.2:20307-20326 None:intergenic 40.0%
GTAGGCACTTGAACAAAAAG+GGG - chr1.2:20282-20301 None:intergenic 40.0%
GTTCAGTTGGATAGAAAGAG+TGG + chr1.2:19748-19767 MS.gene24084:CDS 40.0%
TAGATCTCTCTCTTTAGGCT+GGG + chr1.2:19795-19814 MS.gene24084:CDS 40.0%
TAGGCACTTGAACAAAAAGG+GGG - chr1.2:20281-20300 None:intergenic 40.0%
TCGTAACTGGACTTCTATGT+CGG + chr1.2:19849-19868 MS.gene24084:CDS 40.0%
TGCTGAATGATGAATGGATC+CGG - chr1.2:20072-20091 None:intergenic 40.0%
TGTGTGTGTGTGTGTGTTTA+GGG + chr1.2:20467-20486 MS.gene24084:intron 40.0%
TTGTGTGTGTGTGTGTGTTT+AGG + chr1.2:20466-20485 MS.gene24084:intron 40.0%
! AGATGATATCGGCTATGAGT+TGG - chr1.2:19551-19570 None:intergenic 40.0%
! ATGATATCGGCTATGAGTTG+GGG - chr1.2:19549-19568 None:intergenic 40.0%
! ATTTATGCAGAGCGTTCAGT+TGG + chr1.2:19735-19754 MS.gene24084:intron 40.0%
! CATTCTAGGAGAGACCAAAA+AGG - chr1.2:20416-20435 None:intergenic 40.0%
! GAGATAGAATGCTCTTTTGG+TGG - chr1.2:19601-19620 None:intergenic 40.0%
! GATGATATCGGCTATGAGTT+GGG - chr1.2:19550-19569 None:intergenic 40.0%
!! ACTTGTTAGAAAGCACTGAG+GGG - chr1.2:20339-20358 None:intergenic 40.0%
!! CCGAAGCATTGCATATGTAT+TGG + chr1.2:20547-20566 MS.gene24084:intron 40.0%
!! GAATTATCGTTTGGTGTAGC+AGG + chr1.2:20922-20941 MS.gene24084:CDS 40.0%
!! TTCAAGATGGTTGATGGCTT+TGG + chr1.2:20874-20893 MS.gene24084:CDS 40.0%
!!! ATGGTTGATGGCTTTGGTTT+TGG + chr1.2:20880-20899 MS.gene24084:CDS 40.0%
!!! TGGTTGATGGCTTTGGTTTT+GGG + chr1.2:20881-20900 MS.gene24084:CDS 40.0%
AAAATCTTCCCAAGCAACGC+CGG - chr1.2:19821-19840 None:intergenic 45.0%
AGGCACTTGAACAAAAAGGG+GGG - chr1.2:20280-20299 None:intergenic 45.0%
ATCCCAGATTTCATCGGAGT+CGG - chr1.2:19508-19527 None:intergenic 45.0%
ATCCGCCTACATTTCACGTT+TGG - chr1.2:20985-21004 None:intergenic 45.0%
CACCCATCACTTCTCATTCT+AGG - chr1.2:21057-21076 None:intergenic 45.0%
CATTCATCATTCAGCACAGC+AGG + chr1.2:20076-20095 MS.gene24084:intron 45.0%
CGACCTAGAATGAGAAGTGA+TGG + chr1.2:21051-21070 MS.gene24084:CDS 45.0%
CTAGATCTCTCTCTTTAGGC+TGG + chr1.2:19794-19813 MS.gene24084:CDS 45.0%
CTGCTGTGCTGAATGATGAA+TGG - chr1.2:20078-20097 None:intergenic 45.0%
GAGGATAGGATGATTGGAGA+GGG - chr1.2:19625-19644 None:intergenic 45.0%
GCTGCTAGATCTCTCTCTTT+AGG + chr1.2:19790-19809 MS.gene24084:CDS 45.0%
GTACTCAGGAATCCAGAGTT+GGG + chr1.2:20165-20184 MS.gene24084:intron 45.0%
TGAGGATAGGATGATTGGAG+AGG - chr1.2:19626-19645 None:intergenic 45.0%
TGTACTCAGGAATCCAGAGT+TGG + chr1.2:20164-20183 MS.gene24084:intron 45.0%
! ACTTAGTAGCCTTAGGCTGT+AGG - chr1.2:20300-20319 None:intergenic 45.0%
! CTAGAATGAGAAGTGATGGG+TGG + chr1.2:21055-21074 MS.gene24084:CDS 45.0%
! GGCGAGATAGAATGCTCTTT+TGG - chr1.2:19604-19623 None:intergenic 45.0%
! TATGGAAGGGTCTTGTGTCT+TGG + chr1.2:21240-21259 MS.gene24084:CDS 45.0%
!! AATGAGAAGTGATGGGTGGT+TGG + chr1.2:21059-21078 MS.gene24084:CDS 45.0%
!! GTGTGTCGGCTTAAAATTCG+TGG + chr1.2:20796-20815 MS.gene24084:CDS 45.0%
!! TTATCGTTTGGTGTAGCAGG+TGG + chr1.2:20925-20944 MS.gene24084:CDS 45.0%
!!! GGTTGATGGCTTTGGTTTTG+GGG + chr1.2:20882-20901 MS.gene24084:CDS 45.0%
ACTTGAACAAAAAGGGGGGG+GGG - chr1.2:20276-20295 None:intergenic 50.0%
AGGAGTCGTACGACAGAGTA+CGG - chr1.2:19436-19455 None:intergenic 50.0%
CACTTGAACAAAAAGGGGGG+GGG - chr1.2:20277-20296 None:intergenic 50.0%
CAGAGTTGGGCATTTGGCAA+TGG + chr1.2:20178-20197 MS.gene24084:intron 50.0%
CATTGCCAAATGCCCAACTC+TGG - chr1.2:20180-20199 None:intergenic 50.0%
GCACTTGAACAAAAAGGGGG+GGG - chr1.2:20278-20297 None:intergenic 50.0%
GCGAGTGAGGATAGGATGAT+TGG - chr1.2:19631-19650 None:intergenic 50.0%
GCGTTTGAAGAATTGGCGGA+AGG + chr1.2:19399-19418 MS.gene24084:CDS 50.0%
GGAATCCAGAGTTGGGCATT+TGG + chr1.2:20172-20191 MS.gene24084:intron 50.0%
GGACTTCTATGTCGGATTCC+AGG + chr1.2:19857-19876 MS.gene24084:CDS 50.0%
GGCACTTGAACAAAAAGGGG+GGG - chr1.2:20279-20298 None:intergenic 50.0%
GTTCAAGTGCCTACAGCCTA+AGG + chr1.2:20288-20307 MS.gene24084:intron 50.0%
TAGTATTCGGGGACAAGGCA+CGG - chr1.2:20834-20853 None:intergenic 50.0%
TCATCATTCAGCACAGCAGG+TGG + chr1.2:20079-20098 MS.gene24084:intron 50.0%
TGGGGTGAAGAACTATCCTG+TGG + chr1.2:20900-20919 MS.gene24084:CDS 50.0%
! AGCACTGAGGGGTAGAAGAA+GGG - chr1.2:20328-20347 None:intergenic 50.0%
! ATCGGCTATGAGTTGGGGAT+CGG - chr1.2:19544-19563 None:intergenic 50.0%
! GAAGGGTCTTGTGTCTTGGA+TGG + chr1.2:21244-21263 MS.gene24084:CDS 50.0%
!! AAGCACTGAGGGGTAGAAGA+AGG - chr1.2:20329-20348 None:intergenic 50.0%
!! GGGAGCGTTTGAAGAATTGG+CGG + chr1.2:19395-19414 MS.gene24084:CDS 50.0%
AGTATTCGGGGACAAGGCAC+GGG - chr1.2:20833-20852 None:intergenic 55.0%
AGTCGTACGACAGAGTACGG+CGG - chr1.2:19433-19452 None:intergenic 55.0%
CATCCTATCCTCACTCGCGA+TGG + chr1.2:19633-19652 MS.gene24084:CDS 55.0%
CCAGATTTCATCGGAGTCGG+CGG - chr1.2:19505-19524 None:intergenic 55.0%
CGTACGACTCCTGTTGACGT+CGG + chr1.2:19444-19463 MS.gene24084:CDS 55.0%
CTTGAACAAAAAGGGGGGGG+GGG - chr1.2:20275-20294 None:intergenic 55.0%
GGGTGGTTGGAGACTGAGAT+GGG + chr1.2:21072-21091 MS.gene24084:CDS 55.0%
TCTCTCTCTTTAGGCTGGGC+CGG + chr1.2:19799-19818 MS.gene24084:CDS 55.0%
TGGGTGGTTGGAGACTGAGA+TGG + chr1.2:21071-21090 MS.gene24084:CDS 55.0%
TTGAACAAAAAGGGGGGGGG+GGG - chr1.2:20274-20293 None:intergenic 55.0%
!! CGCCGACTCCGATGAAATCT+GGG + chr1.2:19503-19522 MS.gene24084:CDS 55.0%
!! TGCTCTTTTGGTGGGAGCGT+TGG - chr1.2:19592-19611 None:intergenic 55.0%
CCATTCGACCATCGCGAGTG+AGG - chr1.2:19644-19663 None:intergenic 60.0%
CCTCACTCGCGATGGTCGAA+TGG + chr1.2:19641-19660 MS.gene24084:CDS 60.0%
CGACCATCGCGAGTGAGGAT+AGG - chr1.2:19639-19658 None:intergenic 60.0%
GGCGGCAGAACGGAAAGTCT+TGG - chr1.2:19487-19506 None:intergenic 60.0%
TGAACAAAAAGGGGGGGGGG+GGG - chr1.2:20273-20292 None:intergenic 60.0%
!! CCGCCGACTCCGATGAAATC+TGG + chr1.2:19502-19521 MS.gene24084:CDS 60.0%
!! TTTGGTGGGAGCGTTGGCGA+GGG - chr1.2:19586-19605 None:intergenic 60.0%
!!! TTTTGGTGGGAGCGTTGGCG+AGG - chr1.2:19587-19606 None:intergenic 60.0%
CATCGGAGTCGGCGGCAGAA+CGG - chr1.2:19497-19516 None:intergenic 65.0%
CGACTCCTGTTGACGTCGGC+AGG + chr1.2:19448-19467 MS.gene24084:CDS 65.0%
GAGAGCCTGCCGACGTCAAC+AGG - chr1.2:19456-19475 None:intergenic 65.0%
AGGCTGGGCCGGCGTTGCTT+GGG + chr1.2:19810-19829 MS.gene24084:CDS 70.0%
TAGGCTGGGCCGGCGTTGCT+TGG + chr1.2:19809-19828 MS.gene24084:CDS 70.0%
!! GTGGGAGCGTTGGCGAGGGA+AGG - chr1.2:19582-19601 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 19393 21269 19393 ID=MS.gene24084
chr1.2 mRNA 19393 21269 19393 ID=MS.gene24084.t1;Parent=MS.gene24084
chr1.2 exon 19393 19662 19393 ID=MS.gene24084.t1.exon1;Parent=MS.gene24084.t1
chr1.2 CDS 19393 19662 19393 ID=cds.MS.gene24084.t1;Parent=MS.gene24084.t1
chr1.2 exon 19745 19878 19745 ID=MS.gene24084.t1.exon2;Parent=MS.gene24084.t1
chr1.2 CDS 19745 19878 19745 ID=cds.MS.gene24084.t1;Parent=MS.gene24084.t1
chr1.2 exon 20768 21269 20768 ID=MS.gene24084.t1.exon3;Parent=MS.gene24084.t1
chr1.2 CDS 20768 21269 20768 ID=cds.MS.gene24084.t1;Parent=MS.gene24084.t1
Gene Sequence

>MS.gene24084

ATGGGAGCGTTTGAAGAATTGGCGGAAGGTTGCATTGCCGCCGTACTCTGTCGTACGACTCCTGTTGACGTCGGCAGGCTCTCTCTTGTCTCCAAGACTTTCCGTTCTGCCGCCGACTCCGATGAAATCTGGGATCGTTTTCTCTGTTCCGATCCCCAACTCATAGCCGATATCATCTCACAGTTTCCTTCCCTCGCCAACGCTCCCACCAAAAGAGCATTCTATCTCGCCCTCTCCAATCATCCTATCCTCACTCGCGATGGTCGAATGGTATATTATTGTATTCTTCTTTCTTCCAATTTATCTATCTTTATTCAAATGTTTATTAATGCTCTTCGATTTATTTATGCAGAGCGTTCAGTTGGATAGAAAGAGTGGAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTCTCTTTAGGCTGGGCCGGCGTTGCTTGGGAAGATTTTGAGCAAAATCGTAACTGGACTTCTATGTCGGATTCCAGGTTTCCTCTTAACTTTTCTATTATGTGTCTTCTTAACTAGTTATAGTATGAAGTTTAAGTAAAAATTTGTCATTCAACCATGATTTGAATCTAGCATCATCATTTGACCAGTTCCTTCATTCAACTTCAAACTGATTGATTTCTTTAAATTCATTGATATATACTTATACCTATTACGTTATTTTATCTACCGGATCCATTCATCATTCAGCACAGCAGGTGGCCATGAATTCACAATTTCCTAACATTCATTTTTTTACTTAAATTTCAAATAAAGTATCACAATGTACTCAGGAATCCAGAGTTGGGCATTTGGCAATGGAAAAAAGCTTTGAATTTTCATTGTTTTGTTGTTTTTCATTTTTGTTTGTCTGTTAGTCATCACTAACTACCCCCCCCCCCCCTTTTTGTTCAAGTGCCTACAGCCTAAGGCTACTAAGTTTATGCCCTTCTTCTACCCCTCAGTGCTTTCTAACAAGTTTTGTTTTGATTCAAAATTTGGGAAAATAACTTCATTTCATTTTGTTACACAAACCTTTTTGGTCTCTCCTAGAATGTTTGATGAAAAGGACTAGTACTGACCTTTATTGTGTGTGTGTGTGTGTTTAGGGATACAGAAGTGCCTCTTGTTCTTCTTAGACCCATAGTTTAGAATATTTGCATCTCACCCGAAGCATTGCATATGTATTGGCAATGTTATTGCCAAAATTAAATGAGTAAGCATGTTTAGTTAAATGAGTAAGCATGTGTTCATGAATAAAAAAAAAATCTATTTTTTATTGATATTTTAAATTATTTCAAATAATATTTAACACCCTTTAGATTTATGGCTTTCACTGGTTTTTTGTATTCTTATCTTGGGTAATTTTTGTGCACAAATTTTGGACAGGTTCCCTGAAGTTGTTGAGATTCTTAATGTGTGTCGGCTTAAAATTCGTGGAAAGATAAACACCCGTGCCTTGTCCCCGAATACTACATATGCAACTTATCTTGTGTTCAAGATGGTTGATGGCTTTGGTTTTGGGGTGAAGAACTATCCTGTGGAATTATCGTTTGGTGTAGCAGGTGGTCACAGTAGAACCAAAATTGTCATTTTGGTAGATCCAAACGTGAAATGTAGGCGGATCAACAAAATATTAGGTAGTCAGGACAACAACGCGTTTAGATTGCAACGACCTAGAATGAGAAGTGATGGGTGGTTGGAGACTGAGATGGGAGAGTTCTTCAATTCAGGCTTAGAAGATGAAGAAGTCCAAATGAGTATTACTGGGATAAAGGATGGTTATACTTGGAAGAGAGGTTTCTTTGTTGAAGGAATAGAAGTTAGGCCAAAGGAAGATAATAATCAATATAAACTAAACTATGGAAGGGTCTTGTGTCTTGGATGGTAG
Protein sequence

>MS.gene24084.t1

MGAFEELAEGCIAAVLCRTTPVDVGRLSLVSKTFRSAADSDEIWDRFLCSDPQLIADIISQFPSLANAPTKRAFYLALSNHPILTRDGRMSVQLDRKSGKKCYMLAARSLSLGWAGVAWEDFEQNRNWTSMSDSRFPEVVEILNVCRLKIRGKINTRALSPNTTYATYLVFKMVDGFGFGVKNYPVELSFGVAGGHSRTKIVILVDPNVKCRRINKILGSQDNNAFRLQRPRMRSDGWLETEMGEFFNSGLEDEEVQMSITGIKDGYTWKRGFFVEGIEVRPKEDNNQYKLNYGRVLCLGW