AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006294

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006294.t1 MTR_1g100597 94.203 276 9 2 1 270 1 275 0.0 529
MS.gene006294.t1 MTR_1g079370 74.627 268 64 2 1 267 1 265 8.26e-144 404
MS.gene006294.t1 MTR_1g079180 75.926 270 57 4 1 267 1 265 3.62e-143 402
MS.gene006294.t1 MTR_1g079230 70.652 276 75 2 1 270 1 276 2.61e-140 395
MS.gene006294.t1 MTR_1g079260 70.182 275 77 2 1 270 1 275 3.09e-139 393
MS.gene006294.t1 MTR_1g079460 71.062 273 72 3 1 270 1 269 1.38e-135 383
MS.gene006294.t1 MTR_1g079200 72.894 273 59 5 1 267 1 264 4.90e-134 379
MS.gene006294.t1 MTR_1g100613 78.333 240 43 1 20 250 5 244 5.32e-133 376
MS.gene006294.t1 MTR_1g079380 72.059 272 68 2 1 269 1 267 7.16e-129 367
MS.gene006294.t1 MTR_1g079850 67.254 284 79 4 1 270 1 284 7.80e-127 362
MS.gene006294.t1 MTR_3g006850 63.607 305 72 6 3 270 16 318 1.14e-120 347
MS.gene006294.t1 MTR_1g079250 66.904 281 82 6 1 270 1 281 4.41e-114 330
MS.gene006294.t1 MTR_3g452600 63.296 267 92 2 4 270 10 270 9.35e-113 325
MS.gene006294.t1 MTR_1g026510 61.888 286 93 7 1 270 1 286 5.46e-112 325
MS.gene006294.t1 MTR_1g079410 57.621 269 104 4 5 267 9 273 7.81e-101 295
MS.gene006294.t1 MTR_2g079100 60.227 264 93 3 3 264 8 261 1.55e-100 295
MS.gene006294.t1 MTR_3g450990 56.491 285 98 4 4 270 10 286 8.14e-100 293
MS.gene006294.t1 MTR_1g079350 56.383 282 101 7 1 267 1 275 4.11e-94 278
MS.gene006294.t1 MTR_1g079340 54.639 291 103 8 1 267 40 325 6.10e-87 262
MS.gene006294.t1 MTR_7g096300 60.079 253 84 5 1 247 1 242 3.80e-85 270
MS.gene006294.t1 MTR_1g079140 47.315 298 125 6 4 270 13 309 3.74e-83 252
MS.gene006294.t1 MTR_1g079400 45.296 287 113 4 5 267 13 279 1.72e-79 241
MS.gene006294.t1 MTR_1g078470 62.500 184 62 3 84 267 8 184 1.88e-74 225
MS.gene006294.t1 MTR_7g112550 47.163 282 130 9 2 267 5 283 7.47e-74 227
MS.gene006294.t1 MTR_1g083580 41.219 279 148 6 2 267 6 281 1.28e-65 206
MS.gene006294.t1 MTR_1g079240 57.692 182 62 4 87 267 12 179 4.21e-61 191
MS.gene006294.t1 MTR_7g112560 38.060 268 153 5 4 268 1 258 2.43e-59 189
MS.gene006294.t1 MTR_1g076870 70.149 134 26 3 128 247 2 135 4.34e-58 182
MS.gene006294.t1 MTR_4g023570 38.577 267 131 7 4 267 1 237 3.43e-54 176
MS.gene006294.t1 MTR_1g079210 63.415 123 35 2 129 241 7 129 1.38e-44 147
MS.gene006294.t1 MTR_1g079350 60.584 137 41 3 1 128 1 133 2.76e-44 149
MS.gene006294.t1 MTR_1g079130 44.444 189 83 3 101 267 1 189 3.58e-43 145
MS.gene006294.t1 MTR_2g042540 65.714 105 34 2 1 103 1 105 3.01e-37 128
MS.gene006294.t1 MTR_3g058640 59.615 104 38 1 128 231 7 106 3.27e-36 125
MS.gene006294.t1 MTR_1g078460 70.115 87 26 0 1 87 64 150 2.83e-35 124
MS.gene006294.t1 MTR_7g096310 56.818 132 49 3 57 186 38 163 2.99e-35 124
MS.gene006294.t1 MTR_7g103380 26.812 276 174 6 6 266 21 283 7.26e-30 114
MS.gene006294.t1 MTR_0113s0040 26.071 280 170 5 2 267 20 276 2.32e-25 102
MS.gene006294.t1 MTR_1g101390 26.882 279 167 5 2 266 26 281 1.36e-23 97.4
MS.gene006294.t1 MTR_1g079220 63.380 71 20 2 165 234 1 66 8.78e-21 84.0
MS.gene006294.t1 MTR_4g083970 27.358 212 126 6 63 268 102 291 3.41e-19 85.5
MS.gene006294.t1 MTR_0002s0020 24.014 279 168 6 6 264 24 278 1.15e-18 84.0
MS.gene006294.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 5.24e-18 82.0
MS.gene006294.t1 MTR_5g010800 25.090 279 164 10 6 266 19 270 3.20e-16 77.0
MS.gene006294.t1 MTR_1g079390 72.000 50 12 2 213 262 8 55 2.10e-15 69.3
MS.gene006294.t1 MTR_1g079190 47.887 71 28 1 189 259 113 174 2.12e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006294.t1 AT2G02360 43.609 266 136 4 4 266 14 268 1.12e-74 229
MS.gene006294.t1 AT1G80110 43.494 269 128 5 6 266 3 255 1.57e-67 210
MS.gene006294.t1 AT2G02240 43.182 264 141 4 4 266 61 316 1.19e-66 210
MS.gene006294.t1 AT2G02250 41.852 270 137 6 4 266 47 303 1.12e-64 204
MS.gene006294.t1 AT2G02340 42.379 269 146 5 4 266 36 301 7.23e-64 202
MS.gene006294.t1 AT1G09155 43.011 279 140 8 7 267 3 280 2.45e-63 201
MS.gene006294.t1 AT2G02230 37.013 308 150 6 4 270 32 336 1.77e-62 200
MS.gene006294.t1 AT1G56250 41.429 280 145 6 7 268 4 282 4.55e-62 197
MS.gene006294.t1 AT1G56240 40.288 278 147 6 7 266 4 280 7.13e-60 191
MS.gene006294.t1 AT2G02350 38.662 269 153 6 2 266 22 282 2.98e-58 187
MS.gene006294.t1 AT2G02320 39.552 268 144 8 6 266 42 298 6.61e-52 172
MS.gene006294.t1 AT2G02310 35.581 267 162 4 4 267 45 304 1.53e-51 171
MS.gene006294.t1 AT2G02300 35.662 272 143 8 4 267 34 281 1.23e-42 147
MS.gene006294.t1 AT5G24560 42.188 192 98 4 4 192 3 184 3.11e-42 143
MS.gene006294.t1 AT3G53000 28.114 281 175 6 3 269 20 287 7.77e-31 117
MS.gene006294.t1 AT2G02350 35.294 170 101 5 101 266 1 165 1.56e-28 107
MS.gene006294.t1 AT1G12710 27.240 279 164 7 3 266 27 281 1.02e-21 92.4
MS.gene006294.t1 AT5G52120 26.531 294 157 11 1 266 18 280 3.03e-20 88.2
MS.gene006294.t1 AT1G63090 29.646 226 138 7 3 212 25 245 3.46e-20 88.2
MS.gene006294.t1 AT3G61060 22.222 279 175 6 6 267 27 280 1.86e-19 86.3
MS.gene006294.t1 AT3G61060 21.505 279 178 5 6 267 27 281 1.52e-18 83.6
MS.gene006294.t1 AT4G19840 29.651 172 98 5 99 267 94 245 2.39e-14 71.2
MS.gene006294.t1 AT1G12710 23.676 321 164 8 3 266 27 323 4.31e-14 71.6
MS.gene006294.t1 AT1G33920 26.966 178 102 4 96 267 9 164 5.87e-14 68.6

Find 74 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATCTCTCCACATTTCT+TGG 0.204004 1.1:-72479853 MS.gene006294:CDS
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.1:+72478933 None:intergenic
AATGACAGGGTTTGAAGATT+TGG 0.270841 1.1:-72481007 MS.gene006294:CDS
CTCGTGTTCAAATTGATTGA+TGG 0.294639 1.1:-72478909 MS.gene006294:CDS
AATCTTGCATGTTCTACATT+TGG 0.309985 1.1:+72478804 None:intergenic
CATCATCGACGATGCCAAAA+AGG 0.324659 1.1:-72480767 MS.gene006294:intron
TAGATCTCTCCACATTTCTT+GGG 0.327058 1.1:-72479852 MS.gene006294:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.1:-72480821 MS.gene006294:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.362941 1.1:-72478829 MS.gene006294:CDS
GATGAGTGTTATGGAGATAA+AGG 0.373408 1.1:-72478664 MS.gene006294:CDS
AGACGAAGATTAGCAACTTC+AGG 0.376030 1.1:+72479005 None:intergenic
GGACTGCTATGCCTGATTCC+AGG 0.379956 1.1:-72479805 MS.gene006294:intron
AAGGGGAATTTCTTTCTTGA+AGG 0.399686 1.1:-72478630 MS.gene006294:CDS
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.1:-72479912 MS.gene006294:intron
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.1:-72480897 MS.gene006294:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 1.1:-72478617 MS.gene006294:CDS
GAGAGTCTGCCGGCGTCAAC+AGG 0.416723 1.1:+72480946 None:intergenic
AAAATGGCCAACCTGGAATC+AGG 0.422964 1.1:+72479794 None:intergenic
AGAAGTTCAGATGAGTGTTA+TGG 0.423422 1.1:-72478673 MS.gene006294:CDS
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.1:+72480785 None:intergenic
ATGATGACCGCTATTGGATC+TGG 0.429837 1.1:-72479826 MS.gene006294:CDS
GTTGGTTAATTGTCTACCTT+AGG 0.437901 1.1:+72478594 None:intergenic
AGGAGTTGTACGAGACAGTA+TGG 0.445061 1.1:+72480966 None:intergenic
TTCAAATTGATTGATGGCTA+TGG 0.448670 1.1:-72478903 MS.gene006294:CDS
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.1:+72480894 None:intergenic
GGTCGTGCTGACAGAGTAGT+AGG 0.464775 1.1:-72478777 MS.gene006294:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.1:+72480772 None:intergenic
GATTTATCTGTCGGTGTTGA+AGG 0.475799 1.1:-72478861 MS.gene006294:CDS
TTCAAGAAAGAAATTCCCCT+TGG 0.477363 1.1:+72478632 None:intergenic
TGAGATGATAGAGTTGATAT+CGG 0.478686 1.1:+72480858 None:intergenic
GGGGTGATGATGACCGCTAT+TGG 0.481778 1.1:-72479832 MS.gene006294:CDS
CGTCCTAGTGTGAGAAGTGA+TGG 0.490000 1.1:-72478747 MS.gene006294:CDS
CTTCCTGTGGATTTATCTGT+CGG 0.490828 1.1:-72478870 MS.gene006294:CDS
GACGAAGATTAGCAACTTCA+GGG 0.508122 1.1:+72479006 None:intergenic
GGGTTTGAAGATTTGGCAGA+AGG 0.511439 1.1:-72481000 MS.gene006294:CDS
TCAAATTGATTGATGGCTAT+GGG 0.524048 1.1:-72478902 MS.gene006294:CDS
GGGTGGATGGAGATTGAGAT+GGG 0.529204 1.1:-72478726 MS.gene006294:CDS
ATGATAGAGTTGATATCGGA+AGG 0.534915 1.1:+72480862 None:intergenic
GGCGGCAGAAAGGAAAGTAT+TGG 0.536580 1.1:+72480915 None:intergenic
AGGAATAGAAGTTAGGCCTA+AGG 0.540733 1.1:-72478610 MS.gene006294:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.1:+72480905 None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.1:-72478981 MS.gene006294:CDS
TGGGTTTGAGACCCTTCCTG+TGG 0.549562 1.1:-72478883 MS.gene006294:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.1:+72480786 None:intergenic
AGTGTTATGGAGATAAAGGC+TGG 0.553186 1.1:-72478660 MS.gene006294:CDS
TGTGAGAAGTGATGGGTGGA+TGG 0.556810 1.1:-72478739 MS.gene006294:CDS
AGATCTCTCCACATTTCTTG+GGG 0.557619 1.1:-72479851 MS.gene006294:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.1:-72478995 MS.gene006294:CDS
TGGGTGGATGGAGATTGAGA+TGG 0.563597 1.1:-72478727 MS.gene006294:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.1:-72478998 MS.gene006294:CDS
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.1:-72479899 MS.gene006294:CDS
CACCCATCACTTCTCACACT+AGG 0.570746 1.1:+72478744 None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.1:+72480829 None:intergenic
CATCATCACCCCAAGAAATG+TGG 0.582603 1.1:+72479843 None:intergenic
GGAAACGACGGAGAGTCTGC+CGG 0.586705 1.1:+72480936 None:intergenic
GATAAAGGCTGGTGAGACCA+AGG 0.592773 1.1:-72478649 MS.gene006294:CDS
TTATCTGTCGGTGTTGAAGG+TGG 0.593602 1.1:-72478858 MS.gene006294:CDS
ATAAAGGCTGGTGAGACCAA+GGG 0.609601 1.1:-72478648 MS.gene006294:CDS
CGACAGATAAATCCACAGGA+AGG 0.609772 1.1:+72478871 None:intergenic
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.1:-72478980 MS.gene006294:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.1:+72480897 None:intergenic
ACACCGACAGATAAATCCAC+AGG 0.642651 1.1:+72478867 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.1:+72478941 None:intergenic
GACAGATAAATCCACAGGAA+GGG 0.644862 1.1:+72478872 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.1:+72480888 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.1:-72478647 MS.gene006294:CDS
GTCCTAGTGTGAGAAGTGAT+GGG 0.659394 1.1:-72478746 MS.gene006294:CDS
AAGGAAAGTATTGGAAACGA+CGG 0.663608 1.1:+72480924 None:intergenic
AGGAAGAAAGTGATTCCAGA+CGG 0.665074 1.1:+72480882 None:intergenic
CTAGTGTGAGAAGTGATGGG+TGG 0.706163 1.1:-72478743 MS.gene006294:CDS
TCACTTCTCACACTAGGACG+CGG 0.714640 1.1:+72478750 None:intergenic
CGTACAACTCCTGTTGACGC+CGG 0.724690 1.1:-72480955 MS.gene006294:CDS
TAGCAGTCCAGATCCAATAG+CGG 0.737188 1.1:+72479819 None:intergenic
AGTTGTACGAGACAGTATGG+CGG 0.781475 1.1:+72480969 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTCATTTAACTTT+AGG + chr1.1:72480113-72480132 None:intergenic 10.0%
!!! AATTTATTTGATTAATTTGT+AGG + chr1.1:72479347-72479366 None:intergenic 10.0%
!!! ATTTATTTGATTAATTTGTA+GGG + chr1.1:72479346-72479365 None:intergenic 10.0%
!! ATTGATTGTTGTAAAATATA+TGG - chr1.1:72479617-72479636 MS.gene006294:intron 15.0%
!! TGAAATAATTTAGTTATCAT+TGG - chr1.1:72480335-72480354 MS.gene006294:intron 15.0%
!! TTATGCATTGTAAAATATAT+TGG - chr1.1:72479539-72479558 MS.gene006294:intron 15.0%
!!! TTTATTTGATTAATTTGTAG+GGG + chr1.1:72479345-72479364 None:intergenic 15.0%
!! AAACTCAGATATGAAATATA+AGG + chr1.1:72479928-72479947 None:intergenic 20.0%
!! AACAATGTTAAAACAAACAA+GGG + chr1.1:72479870-72479889 None:intergenic 20.0%
!! AGATATGAAATATAAGGAAA+TGG + chr1.1:72479922-72479941 None:intergenic 20.0%
!! ATTAAATGTAATCAAAAGTG+TGG + chr1.1:72479213-72479232 None:intergenic 20.0%
!! TAAAAAAAGTTATTAGACAG+TGG + chr1.1:72480259-72480278 None:intergenic 20.0%
!! TTACAACAGATAAATACTAA+GGG + chr1.1:72480031-72480050 None:intergenic 20.0%
!! TTACTTATATATACATTTGC+AGG + chr1.1:72479408-72479427 None:intergenic 20.0%
!! TTAGTATTTATCTGTTGTAA+CGG - chr1.1:72480031-72480050 MS.gene006294:intron 20.0%
! AAAAACCAATAAAAATGAGG+GGG + chr1.1:72479838-72479857 None:intergenic 25.0%
! ATTGATTGTTCTTTCATGTT+AGG - chr1.1:72478928-72478947 MS.gene006294:CDS 25.0%
! GAAAAACCAATAAAAATGAG+GGG + chr1.1:72479839-72479858 None:intergenic 25.0%
! GAACAATGTTAAAACAAACA+AGG + chr1.1:72479871-72479890 None:intergenic 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG + chr1.1:72480540-72480559 None:intergenic 25.0%
! GCACAAACAAATAAACAAAA+TGG + chr1.1:72479372-72479391 None:intergenic 25.0%
! GGAAAAACCAATAAAAATGA+GGG + chr1.1:72479840-72479859 None:intergenic 25.0%
! GTTACAACAGATAAATACTA+AGG + chr1.1:72480032-72480051 None:intergenic 25.0%
! TGGAAAAACCAATAAAAATG+AGG + chr1.1:72479841-72479860 None:intergenic 25.0%
! TTGATTGTTCTTTCATGTTA+GGG - chr1.1:72478929-72478948 MS.gene006294:CDS 25.0%
!! AATATGTGATGATACCTTTT+TGG + chr1.1:72478855-72478874 None:intergenic 25.0%
!! GTTATTACTCTTTTTGATGT+TGG - chr1.1:72480429-72480448 MS.gene006294:intron 25.0%
AATCTTGCATGTTCTACATT+TGG + chr1.1:72480804-72480823 None:intergenic 30.0%
ATAAAAATGAGGGGGAAAAA+TGG + chr1.1:72479830-72479849 None:intergenic 30.0%
CAAAAGTCCTTAATTCATAC+TGG - chr1.1:72479479-72479498 MS.gene006294:intron 30.0%
CAATCATCTTTCATAAGTGT+AGG + chr1.1:72479161-72479180 None:intergenic 30.0%
GATGAAAAACAATGAGAAGT+TGG - chr1.1:72480081-72480100 MS.gene006294:intron 30.0%
TAGCACTAAAATTGTCTGTT+TGG - chr1.1:72480776-72480795 MS.gene006294:CDS 30.0%
TGCATTTCAATATACCCAAA+AGG + chr1.1:72479682-72479701 None:intergenic 30.0%
TTAGATGCCAGTATGAATTA+AGG + chr1.1:72479489-72479508 None:intergenic 30.0%
TTCTTGAAGGAATAGAAGTT+AGG - chr1.1:72480988-72481007 MS.gene006294:CDS 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.1:72479706-72479725 MS.gene006294:intron 30.0%
! AAAAGGCATAACATCACAAA+TGG + chr1.1:72480523-72480542 None:intergenic 30.0%
! AATGCTAATCATAAGCCTTT+TGG - chr1.1:72479664-72479683 MS.gene006294:intron 30.0%
! ATGCTAATCATAAGCCTTTT+GGG - chr1.1:72479665-72479684 MS.gene006294:intron 30.0%
! CATCATCGTCTGAAATATTA+GGG - chr1.1:72478876-72478895 MS.gene006294:CDS 30.0%
! GTAGAACATGCAAGATTTTA+CGG - chr1.1:72480807-72480826 MS.gene006294:CDS 30.0%
! TCAAATTGATTGATGGCTAT+GGG - chr1.1:72480703-72480722 MS.gene006294:intron 30.0%
! TCATCATCGTCTGAAATATT+AGG - chr1.1:72478875-72478894 MS.gene006294:CDS 30.0%
! TCTGAACTTCTTCATTTTCA+AGG + chr1.1:72480923-72480942 None:intergenic 30.0%
! TTCAAATTGATTGATGGCTA+TGG - chr1.1:72480702-72480721 MS.gene006294:intron 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG + chr1.1:72480171-72480190 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG + chr1.1:72480773-72480792 None:intergenic 30.0%
!! TGAGATGATAGAGTTGATAT+CGG + chr1.1:72478750-72478769 None:intergenic 30.0%
!! TTTTTCCCCCTCATTTTTAT+TGG - chr1.1:72479830-72479849 MS.gene006294:CDS 30.0%
!!! GAGCTGTTTCAAAGTTTTTT+TGG - chr1.1:72480391-72480410 MS.gene006294:intron 30.0%
AAAACAAACAAGGGAGAAGT+TGG + chr1.1:72479861-72479880 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG - chr1.1:72480232-72480251 MS.gene006294:intron 35.0%
AAGATGATTGAAAACGTGTC+TGG - chr1.1:72479171-72479190 MS.gene006294:intron 35.0%
AAGGGGAATTTCTTTCTTGA+AGG - chr1.1:72480975-72480994 MS.gene006294:CDS 35.0%
AGAAGTTCAGATGAGTGTTA+TGG - chr1.1:72480932-72480951 MS.gene006294:CDS 35.0%
AGATGAAAGTTTCCTTGATG+AGG + chr1.1:72479974-72479993 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG + chr1.1:72480667-72480686 None:intergenic 35.0%
ATGAAAGTTTCCTTGATGAG+GGG + chr1.1:72479972-72479991 None:intergenic 35.0%
CATTGTTCTTTCTCCTTTCT+CGG - chr1.1:72479883-72479902 MS.gene006294:CDS 35.0%
CTCGTGTTCAAATTGATTGA+TGG - chr1.1:72480696-72480715 MS.gene006294:intron 35.0%
CTTTACAAACCAAACCAACA+TGG + chr1.1:72479110-72479129 None:intergenic 35.0%
CTTTCATAAGTGTAGGTGTT+AGG + chr1.1:72479154-72479173 None:intergenic 35.0%
GATGAAAGTTTCCTTGATGA+GGG + chr1.1:72479973-72479992 None:intergenic 35.0%
GATGAGTGTTATGGAGATAA+AGG - chr1.1:72480941-72480960 MS.gene006294:CDS 35.0%
TAAGCTGCATACTGAGTATT+TGG + chr1.1:72480675-72480694 None:intergenic 35.0%
TAGATCTCTCCACATTTCTT+GGG - chr1.1:72479753-72479772 MS.gene006294:intron 35.0%
TCAGGTGTATGGTTAACTTT+GGG + chr1.1:72480207-72480226 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.1:72479693-72479712 MS.gene006294:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG + chr1.1:72480225-72480244 None:intergenic 35.0%
TTCAAGAAAGAAATTCCCCT+TGG + chr1.1:72480976-72480995 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG + chr1.1:72480208-72480227 None:intergenic 35.0%
!! AAGGAAAGTATTGGAAACGA+CGG + chr1.1:72478684-72478703 None:intergenic 35.0%
!! ATGATAGAGTTGATATCGGA+AGG + chr1.1:72478746-72478765 None:intergenic 35.0%
AAACCAACATGGTGGTTCAA+CGG + chr1.1:72479099-72479118 None:intergenic 40.0%
AATGAACAATTCGCCGAGAA+AGG + chr1.1:72479899-72479918 None:intergenic 40.0%
AGACGAAGATTAGCAACTTC+AGG + chr1.1:72480603-72480622 None:intergenic 40.0%
AGATCTCTCCACATTTCTTG+GGG - chr1.1:72479754-72479773 MS.gene006294:intron 40.0%
AGCAAATGCTCCTTCCAAAA+AGG - chr1.1:72478784-72478803 MS.gene006294:CDS 40.0%
AGGAAGAAAGTGATTCCAGA+CGG + chr1.1:72478726-72478745 None:intergenic 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.1:72480995-72481014 MS.gene006294:CDS 40.0%
AGGGGAATAGGATCAATCAA+CGG + chr1.1:72479954-72479973 None:intergenic 40.0%
AGTGTTATGGAGATAAAGGC+TGG - chr1.1:72480945-72480964 MS.gene006294:CDS 40.0%
CTAGATCTCTCCACATTTCT+TGG - chr1.1:72479752-72479771 MS.gene006294:intron 40.0%
CTGTTGTAACGGTAATCAAC+TGG - chr1.1:72480042-72480061 MS.gene006294:intron 40.0%
CTTCCTGTGGATTTATCTGT+CGG - chr1.1:72480735-72480754 MS.gene006294:intron 40.0%
GACAGATAAATCCACAGGAA+GGG + chr1.1:72480736-72480755 None:intergenic 40.0%
GACCAACATCACTGTTATTG+AGG + chr1.1:72480237-72480256 None:intergenic 40.0%
GACGAAGATTAGCAACTTCA+GGG + chr1.1:72480602-72480621 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG + chr1.1:72478822-72478841 None:intergenic 40.0%
GGATAGTTACAGATTGACAG+CGG + chr1.1:72479264-72479283 None:intergenic 40.0%
TACAAACCAAACCAACATGG+TGG + chr1.1:72479107-72479126 None:intergenic 40.0%
TGATGATAGGTCGATCAGAT+AGG + chr1.1:72478823-72478842 None:intergenic 40.0%
TTGCTAATCTTCGTCTTGTG+TGG - chr1.1:72480607-72480626 MS.gene006294:intron 40.0%
! AAAAGTGTGGTGACAACAGT+CGG + chr1.1:72479200-72479219 None:intergenic 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG + chr1.1:72478797-72478816 None:intergenic 40.0%
! CATCTCTGCAACTTTTGTGT+TGG - chr1.1:72480569-72480588 MS.gene006294:intron 40.0%
!! GATTTATCTGTCGGTGTTGA+AGG - chr1.1:72480744-72480763 MS.gene006294:intron 40.0%
AAAATGGCCAACCTGGAATC+AGG + chr1.1:72479814-72479833 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG + chr1.1:72478720-72478739 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG + chr1.1:72480741-72480760 None:intergenic 45.0%
AGGAGTTGTACGAGACAGTA+TGG + chr1.1:72478642-72478661 None:intergenic 45.0%
AGTTGTACGAGACAGTATGG+CGG + chr1.1:72478639-72478658 None:intergenic 45.0%
ATAAAGGCTGGTGAGACCAA+GGG - chr1.1:72480957-72480976 MS.gene006294:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG - chr1.1:72479779-72479798 MS.gene006294:intron 45.0%
ATGGTGGTTCAACGGAACAT+CGG + chr1.1:72479091-72479110 None:intergenic 45.0%
ATGTTTGTGTGCGTCTGTGT+CGG - chr1.1:72479284-72479303 MS.gene006294:intron 45.0%
CATCATCACCCCAAGAAATG+TGG + chr1.1:72479765-72479784 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG - chr1.1:72478838-72478857 MS.gene006294:CDS 45.0%
CGACAGATAAATCCACAGGA+AGG + chr1.1:72480737-72480756 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG - chr1.1:72480610-72480629 MS.gene006294:intron 45.0%
GAGGTTCAGATTCAGGTGTA+TGG + chr1.1:72480218-72480237 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG - chr1.1:72479996-72480015 MS.gene006294:intron 45.0%
GGGTTTGAAGATTTGGCAGA+AGG - chr1.1:72478605-72478624 MS.gene006294:CDS 45.0%
GTCCTAGTGTGAGAAGTGAT+GGG - chr1.1:72480859-72480878 MS.gene006294:CDS 45.0%
GTTTCCTTGATGAGGGGAAT+AGG + chr1.1:72479966-72479985 None:intergenic 45.0%
TAGCAGTCCAGATCCAATAG+CGG + chr1.1:72479789-72479808 None:intergenic 45.0%
TGATCCTATTCCCCTCATCA+AGG - chr1.1:72479959-72479978 MS.gene006294:intron 45.0%
TTGGCATCGTCGATGATGAT+AGG + chr1.1:72478836-72478855 None:intergenic 45.0%
! CTGCAACTTTTGTGTTGGAC+AGG - chr1.1:72480574-72480593 MS.gene006294:intron 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG + chr1.1:72478801-72478820 None:intergenic 45.0%
! GTTGAACCACCATGTTGGTT+TGG - chr1.1:72479098-72479117 MS.gene006294:intron 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG + chr1.1:72478779-72478798 None:intergenic 45.0%
!! TTATCTGTCGGTGTTGAAGG+TGG - chr1.1:72480747-72480766 MS.gene006294:intron 45.0%
!! TACATTTATTATTATTATTA+CGG - chr1.1:72479052-72479071 MS.gene006294:intron 5.0%
!! TATTAGATATATTATTAAAT+GGG - chr1.1:72479317-72479336 MS.gene006294:intron 5.0%
!! TTATTAGATATATTATTAAA+TGG - chr1.1:72479316-72479335 MS.gene006294:intron 5.0%
CACCCATCACTTCTCACACT+AGG + chr1.1:72480864-72480883 None:intergenic 50.0%
CGTCCTAGTGTGAGAAGTGA+TGG - chr1.1:72480858-72480877 MS.gene006294:CDS 50.0%
GACACAGACGCACACAAACA+TGG + chr1.1:72479285-72479304 None:intergenic 50.0%
GATAAAGGCTGGTGAGACCA+AGG - chr1.1:72480956-72480975 MS.gene006294:CDS 50.0%
GGGTGGATGGAGATTGAGAT+GGG - chr1.1:72480879-72480898 MS.gene006294:CDS 50.0%
GTTCCGTTGAACCACCATGT+TGG - chr1.1:72479093-72479112 MS.gene006294:intron 50.0%
TAAAGGCTGGTGAGACCAAG+GGG - chr1.1:72480958-72480977 MS.gene006294:CDS 50.0%
TCACTTCTCACACTAGGACG+CGG + chr1.1:72480858-72480877 None:intergenic 50.0%
TGCTATGCCTGATTCCAGGT+TGG - chr1.1:72479804-72479823 MS.gene006294:intron 50.0%
TGGGTGGATGGAGATTGAGA+TGG - chr1.1:72480878-72480897 MS.gene006294:CDS 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.1:72480625-72480644 MS.gene006294:intron 50.0%
! ATTCCAGACGGCATCGGAAT+CGG + chr1.1:72478714-72478733 None:intergenic 50.0%
! CTAGTGTGAGAAGTGATGGG+TGG - chr1.1:72480862-72480881 MS.gene006294:CDS 50.0%
! GGCGGCAGAAAGGAAAGTAT+TGG + chr1.1:72478693-72478712 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGA+TGG - chr1.1:72480866-72480885 MS.gene006294:CDS 50.0%
AGGGGGAAAAATGGCCAACC+TGG + chr1.1:72479821-72479840 None:intergenic 55.0%
CGTACAACTCCTGTTGACGC+CGG - chr1.1:72478650-72478669 MS.gene006294:CDS 55.0%
GGACTGCTATGCCTGATTCC+AGG - chr1.1:72479800-72479819 MS.gene006294:intron 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.1:72480624-72480643 MS.gene006294:intron 55.0%
! GGGGTGATGATGACCGCTAT+TGG - chr1.1:72479773-72479792 MS.gene006294:intron 55.0%
! GGTCGTGCTGACAGAGTAGT+AGG - chr1.1:72480828-72480847 MS.gene006294:CDS 55.0%
! TGGGTTTGAGACCCTTCCTG+TGG - chr1.1:72480722-72480741 MS.gene006294:intron 55.0%
CATCGGAATCGGCGGCAGAA+AGG + chr1.1:72478703-72478722 None:intergenic 60.0%
GGAAACGACGGAGAGTCTGC+CGG + chr1.1:72478672-72478691 None:intergenic 60.0%
GAGAGTCTGCCGGCGTCAAC+AGG + chr1.1:72478662-72478681 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG + chr1.1:72478711-72478730 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG - chr1.1:72478708-72478727 MS.gene006294:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72478599 72481028 72478599 ID=MS.gene006294
chr1.1 mRNA 72478599 72481028 72478599 ID=MS.gene006294.t1;Parent=MS.gene006294
chr1.1 exon 72480768 72481028 72480768 ID=MS.gene006294.t1.exon1;Parent=MS.gene006294.t1
chr1.1 CDS 72480768 72481028 72480768 ID=cds.MS.gene006294.t1;Parent=MS.gene006294.t1
chr1.1 exon 72479806 72479924 72479806 ID=MS.gene006294.t1.exon2;Parent=MS.gene006294.t1
chr1.1 CDS 72479806 72479924 72479806 ID=cds.MS.gene006294.t1;Parent=MS.gene006294.t1
chr1.1 exon 72478599 72479031 72478599 ID=MS.gene006294.t1.exon3;Parent=MS.gene006294.t1
chr1.1 CDS 72478599 72479031 72478599 ID=cds.MS.gene006294.t1;Parent=MS.gene006294.t1
Gene Sequence

>MS.gene006294

ATGACAGGGTTTGAAGATTTGGCAGAAGGATGCATTTCCGCCATACTGTCTCGTACAACTCCTGTTGACGCCGGCAGACTCTCCGTCGTTTCCAATACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTTCCTTCCGATATCAACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGGTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTGACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCTATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTACGGTAGTGCAGTAGATCCGATGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGATCTACCTAACACCTACACTTATGAAAGATGATTGAAAACGTGTCTGGTGTCCGACTGTTGTCACCACACTTTTGATTACATTTAATTTTTTTTTTTTTTTTTTTTTAATTATGACCGCTGTCAATCTGTAACTATCCATGTTTGTGTGCGTCTGTGTCGGTGATTCATATTATTAGATATATTATTAAATGGGTACCCCTACAAATTAATCAAATAAATTAACCATTTTGTTTATTTGTTTGTGCTTTTAAACTGTGTCCTGCAAATGTATATATAAGTAAAATAAGTATAATTAAGATAAGACTCAATATTAGTTGAGCATTGTAAAAAAACAAAAGTCCTTAATTCATACTGGCATCTAATATCTTTGAGATCTAAAGATTCTCAACAGTTTATGCATTGTAAAATATATTGGCTGAAGAAAGTCTGCTACTATGCATGTATTTTCTACAGTTACATACGAATGCTCAATTGATTGTTGTAAAATATATGGTGATTTTTTAAACGCTTAGTTCAGAATGCTAATCATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTCCACATTTCTTGGGGTGATGATGACCGCTATTGGATCTGGACTGCTATGCCTGATTCCAGGTTGGCCATTTTTCCCCCTCATTTTTATTGGTTTTTCCAACTTCTCCCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGCGAATTGTTCATTCCATTTCCTTATATTTCATATCTGAGTTTATACCGTTGATTGATCCTATTCCCCTCATCAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCTTAGTATTTATCTGTTGTAACGGTAATCAACTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGGAATGTACCTAAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGTACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGTTGGAAACTTTTGATTCAACTAGCAAATTTTAGTTGATGAGCTTGCAGTGTACGTACACATTTATAAATGTTCCATTTGTGATGTTATGCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTTTGTGTTGGACAGGTTCCCTGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTCGTGTTCAAATTGATTGATGGCTATGGGTTTGAGACCCTTCCTGTGGATTTATCTGTCGGTGTTGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACATGCAAGATTTTACGGTCGTGCTGACAGAGTAGTAGGATTGCCGCGTCCTAGTGTGAGAAGTGATGGGTGGATGGAGATTGAGATGGGAGAGTTCTTCAACTCAAGCCTTGAAAATGAAGAAGTTCAGATGAGTGTTATGGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAGGTAGACAATTAA
Protein sequence

>MS.gene006294.t1

MTGFEDLAEGCISAILSRTTPVDAGRLSVVSNTFLSAADSDAVWNHFLPSDINSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGKKCYMLAARSLHISWGDDDRYWIWTAMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVFKLIDGYGFETLPVDLSVGVEGGHSSTKIVCLDPNVEHARFYGRADRVVGLPRPSVRSDGWMEIEMGEFFNSSLENEEVQMSVMEIKAGETKGNFFLEGIEVRPKVDN