AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74912.t1 MTR_1g079850 91.549 284 24 0 5 288 1 284 0.0 530
MS.gene74912.t1 MTR_1g100597 70.070 284 76 5 5 288 1 275 2.39e-130 371
MS.gene74912.t1 MTR_1g079180 67.972 281 74 5 5 285 1 265 1.90e-128 366
MS.gene74912.t1 MTR_1g079370 64.057 281 85 3 5 285 1 265 3.56e-124 355
MS.gene74912.t1 MTR_1g079200 66.078 283 75 3 5 285 1 264 7.51e-123 352
MS.gene74912.t1 MTR_1g079230 65.263 285 89 4 5 288 1 276 1.76e-120 346
MS.gene74912.t1 MTR_1g079260 62.807 285 95 4 5 288 1 275 1.10e-118 342
MS.gene74912.t1 MTR_1g079460 61.972 284 93 3 5 288 1 269 2.10e-115 333
MS.gene74912.t1 MTR_1g079380 62.278 281 90 2 5 285 1 265 9.14e-115 332
MS.gene74912.t1 MTR_1g079250 65.625 288 88 6 5 288 1 281 4.32e-114 331
MS.gene74912.t1 MTR_1g100613 68.675 249 65 4 24 268 5 244 4.19e-110 318
MS.gene74912.t1 MTR_3g006850 58.766 308 94 6 8 288 17 318 2.10e-105 310
MS.gene74912.t1 MTR_1g026510 58.362 293 106 6 5 288 1 286 9.07e-105 307
MS.gene74912.t1 MTR_3g452600 57.193 285 102 3 4 288 6 270 2.27e-101 297
MS.gene74912.t1 MTR_2g079100 56.584 281 96 3 4 282 5 261 1.70e-93 277
MS.gene74912.t1 MTR_3g450990 53.156 301 105 5 4 288 6 286 1.10e-90 271
MS.gene74912.t1 MTR_1g079410 49.828 291 124 5 1 286 1 274 2.09e-84 254
MS.gene74912.t1 MTR_1g079350 52.218 293 110 8 5 285 1 275 1.78e-83 252
MS.gene74912.t1 MTR_1g079340 50.820 305 113 9 2 285 37 325 2.73e-82 251
MS.gene74912.t1 MTR_1g079140 46.801 297 136 5 8 285 13 306 3.50e-78 240
MS.gene74912.t1 MTR_7g096300 54.135 266 93 7 5 265 1 242 1.03e-74 243
MS.gene74912.t1 MTR_1g079400 43.056 288 132 6 9 285 13 279 1.62e-64 204
MS.gene74912.t1 MTR_1g078470 56.757 185 63 3 101 285 17 184 4.30e-63 197
MS.gene74912.t1 MTR_7g112550 41.724 290 154 10 3 285 2 283 4.44e-60 192
MS.gene74912.t1 MTR_1g083580 38.889 288 156 9 6 285 6 281 9.44e-59 189
MS.gene74912.t1 MTR_1g079240 53.927 191 65 3 95 285 12 179 3.45e-55 177
MS.gene74912.t1 MTR_2g042540 73.832 107 26 1 5 111 1 105 1.22e-48 158
MS.gene74912.t1 MTR_7g112560 36.918 279 153 7 8 285 1 257 5.15e-47 158
MS.gene74912.t1 MTR_1g076870 59.259 135 49 2 136 265 2 135 5.00e-46 152
MS.gene74912.t1 MTR_1g079350 52.663 169 69 4 5 167 1 164 2.67e-44 150
MS.gene74912.t1 MTR_4g023570 34.173 278 142 4 8 285 1 237 9.00e-42 144
MS.gene74912.t1 MTR_1g079130 44.444 189 93 4 109 285 1 189 1.44e-38 134
MS.gene74912.t1 MTR_1g079210 56.250 128 48 2 137 260 7 130 8.82e-38 130
MS.gene74912.t1 MTR_1g078460 67.391 92 26 2 4 95 63 150 8.16e-31 113
MS.gene74912.t1 MTR_3g058640 53.509 114 39 1 136 249 7 106 3.22e-30 110
MS.gene74912.t1 MTR_7g096310 49.635 137 63 3 58 190 25 159 7.74e-28 105
MS.gene74912.t1 MTR_7g103380 23.549 293 186 6 7 286 18 285 1.68e-22 94.7
MS.gene74912.t1 MTR_0002s0020 29.825 171 113 3 1 169 18 183 1.74e-18 83.6
MS.gene74912.t1 MTR_0113s0040 31.973 147 97 2 8 154 22 165 1.90e-18 83.6
MS.gene74912.t1 MTR_4g083970 26.141 241 137 7 54 285 82 290 1.70e-17 80.9
MS.gene74912.t1 MTR_5g010800 31.126 151 97 4 7 155 16 161 2.36e-17 80.5
MS.gene74912.t1 MTR_1g101390 25.887 282 176 11 10 286 30 283 1.70e-16 78.2
MS.gene74912.t1 MTR_1g079220 49.367 79 26 1 173 251 1 65 1.41e-15 70.5
MS.gene74912.t1 MTR_4g102770 31.034 145 98 2 10 154 21 163 2.23e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74912.t1 AT1G80110 43.636 275 131 7 11 284 4 255 6.40e-66 207
MS.gene74912.t1 AT2G02360 38.214 280 145 5 8 284 14 268 1.41e-61 196
MS.gene74912.t1 AT1G09155 41.197 284 152 7 11 285 3 280 6.11e-56 182
MS.gene74912.t1 AT2G02250 37.857 280 148 7 8 284 47 303 1.91e-54 179
MS.gene74912.t1 AT2G02240 37.589 282 153 5 8 288 61 320 1.92e-53 177
MS.gene74912.t1 AT2G02230 34.483 319 167 8 3 288 27 336 2.50e-53 177
MS.gene74912.t1 AT1G56240 39.146 281 160 5 11 284 4 280 8.53e-53 174
MS.gene74912.t1 AT1G56250 39.007 282 161 5 11 285 4 281 1.41e-49 166
MS.gene74912.t1 AT2G02340 34.375 288 162 7 5 284 33 301 7.80e-48 162
MS.gene74912.t1 AT2G02310 35.106 282 159 8 8 286 45 305 1.67e-44 153
MS.gene74912.t1 AT2G02350 32.979 282 163 7 7 284 23 282 3.37e-42 147
MS.gene74912.t1 AT2G02320 34.737 285 148 10 10 284 42 298 1.20e-39 140
MS.gene74912.t1 AT2G02300 32.414 290 146 9 7 286 33 282 8.20e-39 138
MS.gene74912.t1 AT5G24560 45.890 146 72 2 7 152 2 140 9.28e-37 130
MS.gene74912.t1 AT3G53000 26.460 291 175 7 10 287 23 287 1.47e-24 100
MS.gene74912.t1 AT2G02350 30.556 180 106 5 109 284 1 165 3.96e-18 80.5
MS.gene74912.t1 AT1G12710 29.878 164 109 3 10 173 30 187 6.45e-17 79.3
MS.gene74912.t1 AT1G63090 28.986 207 124 6 10 200 28 227 3.97e-16 77.0
MS.gene74912.t1 AT3G61060 28.767 146 97 3 10 153 27 167 6.88e-16 76.6
MS.gene74912.t1 AT5G52120 30.769 156 103 2 3 154 16 170 7.90e-16 76.3
MS.gene74912.t1 AT3G61060 27.397 146 100 2 10 153 27 168 1.60e-15 75.5
MS.gene74912.t1 AT1G12710 29.747 158 97 4 10 157 30 183 4.26e-12 65.9

Find 86 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATATGGCTCCGTCTTTC+TGG 0.113222 1.1:-59362439 MS.gene74912:CDS
TTCAAGATGATTGCGGTATT+TGG 0.206757 1.1:-59362565 MS.gene74912:CDS
TAAGCCGCATACTGAGTAAT+TGG 0.244954 1.1:+59362595 None:intergenic
CCGCTGATTCCGACGCCGTC+TGG 0.306305 1.1:-59363253 MS.gene74912:CDS
AAGCACTAAAATTGTGTGTT+TGG 0.322198 1.1:-59362491 MS.gene74912:CDS
TGAAGAAGCTTAGCAACTTT+GGG 0.332813 1.1:+59362667 None:intergenic
TGAGCATTGTCGATGATGAT+AGG 0.336712 1.1:+59363116 None:intergenic
TGCCAACGCTCCTACCAAAA+AGG 0.348280 1.1:-59363165 MS.gene74912:CDS
TAGATCTCTCGCCATTGCTT+GGG 0.355736 1.1:-59362882 MS.gene74912:CDS
GTGCGTTGGCTTGAAATTCA+TGG 0.359165 1.1:-59362643 MS.gene74912:CDS
CTTAATCAATTGTCTTCCTT+AGG 0.364137 1.1:+59362226 None:intergenic
CTAGATCTCTCGCCATTGCT+TGG 0.374556 1.1:-59362883 MS.gene74912:CDS
AAGGGAAATTTCTTTCTTGA+AGG 0.377188 1.1:-59362262 MS.gene74912:CDS
ATAGGAACAAAGAACTAATA+TGG 0.377474 1.1:-59362453 MS.gene74912:CDS
GTGAAGAAGCTTAGCAACTT+TGG 0.379608 1.1:+59362666 None:intergenic
GGATTGCTGTGCCTGATTCC+AGG 0.382495 1.1:-59362835 MS.gene74912:intron
TGATGATAGGGCGCTCAGAT+AGG 0.392390 1.1:+59363129 None:intergenic
AGATGATGAAGTCGATGAAT+TGG 0.404952 1.1:+59363207 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.416329 1.1:-59362942 MS.gene74912:intron
GATGATGAAGTCGATGAATT+GGG 0.420088 1.1:+59363208 None:intergenic
AAGCCGCATACTGAGTAATT+GGG 0.424150 1.1:+59362596 None:intergenic
GCATAACCAAACCTGGAATC+AGG 0.428282 1.1:+59362824 None:intergenic
CGGAGTGGTACGAGATAGTA+TGG 0.433671 1.1:+59363322 None:intergenic
TAATATGGCTCCGTCTTTCT+GGG 0.439907 1.1:-59362438 MS.gene74912:CDS
TTGTTCCTATGTACCAAGCT+TGG 0.444587 1.1:+59362466 None:intergenic
CATCATCGACAATGCTCAAA+AGG 0.444946 1.1:-59363111 MS.gene74912:intron
CATCCTGTGGACTTGTTAGT+TGG 0.456770 1.1:-59362532 MS.gene74912:CDS
TGGATCCAAGCTTGGTACAT+AGG 0.466567 1.1:-59362471 MS.gene74912:CDS
CTAAGCTTCTTCACGTGCGT+TGG 0.466916 1.1:-59362657 MS.gene74912:CDS
GGTAAAATGCAAAACAGAAT+GGG 0.467299 1.1:-59363380 None:intergenic
ATTAGTGTTATCGAGATAGA+TGG 0.468630 1.1:-59362295 MS.gene74912:CDS
GGGAACGTTTGAAGAATTAC+CGG 0.469130 1.1:-59363360 MS.gene74912:CDS
ATGTCGCACAACAAAGTAGT+AGG 0.481595 1.1:-59362409 MS.gene74912:CDS
ATGGCGGCAATGCACCCTTC+CGG 0.486147 1.1:+59363341 None:intergenic
CCACTCCGGCTGACGTCGGC+AGG 0.500315 1.1:-59363307 MS.gene74912:CDS
ACGATGATCGATATTGCAAA+TGG 0.500644 1.1:-59362856 MS.gene74912:CDS
GAGCATTGTCGATGATGATA+GGG 0.502802 1.1:+59363117 None:intergenic
GAGAACCTGCCGACGTCAGC+CGG 0.503179 1.1:+59363302 None:intergenic
AGGTAAAATGCAAAACAGAA+TGG 0.506013 1.1:-59363381 None:intergenic
AGCGGCAGAACGGAATGTCT+TGG 0.509093 1.1:+59363271 None:intergenic
TTCTTTAATTTATGCCTCGA+AGG 0.519154 1.1:-59362331 MS.gene74912:CDS
GATGATAGGGCGCTCAGATA+GGG 0.525529 1.1:+59363130 None:intergenic
CGTCCTTGTGTGAGACGTGA+TGG 0.528932 1.1:-59362379 MS.gene74912:CDS
AGGAATAGAAGTTAGACCTA+AGG 0.534122 1.1:-59362242 MS.gene74912:CDS
TCAAGAAAGAAATTTCCCTT+CGG 0.536909 1.1:+59362265 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.1:-59362358 MS.gene74912:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.1:-59362359 MS.gene74912:CDS
AGTAATTGGGGACAAGGCAC+AGG 0.544142 1.1:+59362609 None:intergenic
GTAGGAGCGTTGGCAATGGA+AGG 0.561351 1.1:+59363173 None:intergenic
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.1:-59362929 MS.gene74912:CDS
AGATCTCTCGCCATTGCTTG+GGG 0.568943 1.1:-59362881 MS.gene74912:CDS
TGTGGACTTCTACACCTTCG+AGG 0.569696 1.1:+59362317 None:intergenic
TCTTGTGTTCAAGATGATTG+CGG 0.577737 1.1:-59362572 MS.gene74912:CDS
CCAGACGGCGTCGGAATCAG+CGG 0.582407 1.1:+59363253 None:intergenic
TGTGTGTTTGGATCCAAGCT+TGG 0.582832 1.1:-59362479 MS.gene74912:CDS
GTCCCCAATTACTCAGTATG+CGG 0.584074 1.1:-59362599 MS.gene74912:CDS
CTATCTCGATAACACTAATG+TGG 0.592924 1.1:+59362299 None:intergenic
GACTTGTTAGTTGGTGTCGA+AGG 0.594500 1.1:-59362523 MS.gene74912:CDS
ATCATCGTCACCCCAAGCAA+TGG 0.595008 1.1:+59362871 None:intergenic
CACCCATCACGTCTCACACA+AGG 0.595122 1.1:+59362376 None:intergenic
CCTGCCGACGTCAGCCGGAG+TGG 0.595334 1.1:+59363307 None:intergenic
TGTGAGACGTGATGGGTGGT+TGG 0.601299 1.1:-59362371 MS.gene74912:CDS
GAAGAAGCTTAGCAACTTTG+GGG 0.601922 1.1:+59362668 None:intergenic
TTTGGTAGGAGCGTTGGCAA+TGG 0.610470 1.1:+59363169 None:intergenic
ACATACTAGTCCCAGAAAGA+CGG 0.611319 1.1:+59362428 None:intergenic
GATAGATGGTGATTTGCCGA+AGG 0.613865 1.1:-59362281 MS.gene74912:CDS
ATAGATGGTGATTTGCCGAA+GGG 0.616572 1.1:-59362280 MS.gene74912:CDS
CGTCGGAATCAGCGGCAGAA+CGG 0.619760 1.1:+59363261 None:intergenic
ACACCAACTAACAAGTCCAC+AGG 0.620063 1.1:+59362529 None:intergenic
CGTTTGAAGAATTACCGGAA+GGG 0.623415 1.1:-59363355 MS.gene74912:CDS
ATGATGAAGTCGATGAATTG+GGG 0.626092 1.1:+59363209 None:intergenic
GTCCTTGTGTGAGACGTGAT+GGG 0.628973 1.1:-59362378 MS.gene74912:CDS
ACGTTTGAAGAATTACCGGA+AGG 0.633270 1.1:-59363356 MS.gene74912:CDS
AGCCGCATACTGAGTAATTG+GGG 0.640308 1.1:+59362597 None:intergenic
TGGATTTGAGAATCATCCTG+TGG 0.644402 1.1:-59362545 MS.gene74912:CDS
GGAGCGTTGGCAATGGAAGG+AGG 0.646074 1.1:+59363176 None:intergenic
AAAATGATTCCAGACGGCGT+CGG 0.652221 1.1:+59363244 None:intergenic
ATACTGAGTAATTGGGGACA+AGG 0.658194 1.1:+59362603 None:intergenic
TGACGTCGGCAGGTTCTCCG+TGG 0.673421 1.1:-59363297 MS.gene74912:CDS
ACGGAGAAAATGATTCCAGA+CGG 0.677220 1.1:+59363238 None:intergenic
TGATGAAGTCGATGAATTGG+GGG 0.685586 1.1:+59363210 None:intergenic
CTTGTGTGAGACGTGATGGG+TGG 0.689727 1.1:-59362375 MS.gene74912:CDS
ACGGAATGTCTTGGAAACCA+CGG 0.690249 1.1:+59363280 None:intergenic
CGTACCACTCCGGCTGACGT+CGG 0.713269 1.1:-59363311 MS.gene74912:CDS
CATACTATCTCGTACCACTC+CGG 0.714669 1.1:-59363321 MS.gene74912:CDS
AGTGGTACGAGATAGTATGG+CGG 0.804735 1.1:+59363325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGAGACTAAAATT+TGG + chr1.1:59362895-59362914 None:intergenic 15.0%
!!! TAGAAACTGAATTTAATTTT+TGG - chr1.1:59362599-59362618 MS.gene74912:CDS 15.0%
! ATAGGAACAAAGAACTAATA+TGG - chr1.1:59363152-59363171 MS.gene74912:CDS 25.0%
! TATAAATACTCCATTTGTGT+TGG - chr1.1:59362907-59362926 MS.gene74912:CDS 25.0%
! TTGTCAATTATACGAGAAAT+TGG + chr1.1:59362541-59362560 None:intergenic 25.0%
AAGCACTAAAATTGTGTGTT+TGG - chr1.1:59363114-59363133 MS.gene74912:CDS 30.0%
AAGGGAAATTTCTTTCTTGA+AGG - chr1.1:59363343-59363362 MS.gene74912:CDS 30.0%
AATTTGGAAGTTGTAAACCA+AGG + chr1.1:59362879-59362898 None:intergenic 30.0%
ATAGTAAGAAAACACAGAGA+GGG - chr1.1:59362570-59362589 MS.gene74912:CDS 30.0%
ATTAGTGTTATCGAGATAGA+TGG - chr1.1:59363310-59363329 MS.gene74912:CDS 30.0%
ATTTGGAAGTTGTAAACCAA+GGG + chr1.1:59362878-59362897 None:intergenic 30.0%
TATAGTAAGAAAACACAGAG+AGG - chr1.1:59362569-59362588 MS.gene74912:CDS 30.0%
TCAAGAAAGAAATTTCCCTT+CGG + chr1.1:59363343-59363362 None:intergenic 30.0%
TCAATTATACGAGAAATTGG+AGG + chr1.1:59362538-59362557 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.1:59362676-59362695 MS.gene74912:intron 30.0%
! TGAAATGATTTTGTTACCCT+TGG - chr1.1:59362859-59362878 MS.gene74912:CDS 30.0%
! TTCTTTAATTTATGCCTCGA+AGG - chr1.1:59363274-59363293 MS.gene74912:CDS 30.0%
!! ACACAATTTTAGTGCTTCTA+TGG + chr1.1:59363111-59363130 None:intergenic 30.0%
ACGATGATCGATATTGCAAA+TGG - chr1.1:59362749-59362768 MS.gene74912:intron 35.0%
AGATGATGAAGTCGATGAAT+TGG + chr1.1:59362401-59362420 None:intergenic 35.0%
AGGAATAGAAGTTAGACCTA+AGG - chr1.1:59363363-59363382 MS.gene74912:CDS 35.0%
ATACTCCATTTGTGTTGGAT+AGG - chr1.1:59362912-59362931 MS.gene74912:CDS 35.0%
ATGATGAAGTCGATGAATTG+GGG + chr1.1:59362399-59362418 None:intergenic 35.0%
ATTATACGAGAAATTGGAGG+AGG + chr1.1:59362535-59362554 None:intergenic 35.0%
CTATCTCGATAACACTAATG+TGG + chr1.1:59363309-59363328 None:intergenic 35.0%
GATGATGAAGTCGATGAATT+GGG + chr1.1:59362400-59362419 None:intergenic 35.0%
TCTTGTGTTCAAGATGATTG+CGG - chr1.1:59363033-59363052 MS.gene74912:intron 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.1:59362663-59362682 MS.gene74912:CDS 35.0%
TGAAGAAGCTTAGCAACTTT+GGG + chr1.1:59362941-59362960 None:intergenic 35.0%
TTCAAGATGATTGCGGTATT+TGG - chr1.1:59363040-59363059 MS.gene74912:intron 35.0%
AAGCCGCATACTGAGTAATT+GGG + chr1.1:59363012-59363031 None:intergenic 40.0%
ACATACTAGTCCCAGAAAGA+CGG + chr1.1:59363180-59363199 None:intergenic 40.0%
ACGGAGAAAATGATTCCAGA+CGG + chr1.1:59362370-59362389 None:intergenic 40.0%
ACGTTTGAAGAATTACCGGA+AGG - chr1.1:59362249-59362268 MS.gene74912:CDS 40.0%
ATACTGAGTAATTGGGGACA+AGG + chr1.1:59363005-59363024 None:intergenic 40.0%
ATGTCGCACAACAAAGTAGT+AGG - chr1.1:59363196-59363215 MS.gene74912:CDS 40.0%
CATCATCGACAATGCTCAAA+AGG - chr1.1:59362494-59362513 MS.gene74912:CDS 40.0%
CGTTTGAAGAATTACCGGAA+GGG - chr1.1:59362250-59362269 MS.gene74912:CDS 40.0%
GAAGAAGCTTAGCAACTTTG+GGG + chr1.1:59362940-59362959 None:intergenic 40.0%
GGGAACGTTTGAAGAATTAC+CGG - chr1.1:59362245-59362264 MS.gene74912:CDS 40.0%
GTGAAGAAGCTTAGCAACTT+TGG + chr1.1:59362942-59362961 None:intergenic 40.0%
GTTTCAAGCATAACCAAACC+TGG + chr1.1:59362791-59362810 None:intergenic 40.0%
TAAGCCGCATACTGAGTAAT+TGG + chr1.1:59363013-59363032 None:intergenic 40.0%
TAATATGGCTCCGTCTTTCT+GGG - chr1.1:59363167-59363186 MS.gene74912:CDS 40.0%
TGATGAAGTCGATGAATTGG+GGG + chr1.1:59362398-59362417 None:intergenic 40.0%
TGGATTTGAGAATCATCCTG+TGG - chr1.1:59363060-59363079 MS.gene74912:intron 40.0%
TTGTTCCTATGTACCAAGCT+TGG + chr1.1:59363142-59363161 None:intergenic 40.0%
! ATAGATGGTGATTTGCCGAA+GGG - chr1.1:59363325-59363344 MS.gene74912:CDS 40.0%
! GAGCATTGTCGATGATGATA+GGG + chr1.1:59362491-59362510 None:intergenic 40.0%
! TGAGCATTGTCGATGATGAT+AGG + chr1.1:59362492-59362511 None:intergenic 40.0%
!! AGAAAGAGAGCCTTTTTGGT+AGG + chr1.1:59362453-59362472 None:intergenic 40.0%
AAAATGATTCCAGACGGCGT+CGG + chr1.1:59362364-59362383 None:intergenic 45.0%
ACACCAACTAACAAGTCCAC+AGG + chr1.1:59363079-59363098 None:intergenic 45.0%
ACGGAATGTCTTGGAAACCA+CGG + chr1.1:59362328-59362347 None:intergenic 45.0%
AGCCGCATACTGAGTAATTG+GGG + chr1.1:59363011-59363030 None:intergenic 45.0%
AGTGGTACGAGATAGTATGG+CGG + chr1.1:59362283-59362302 None:intergenic 45.0%
CATACTATCTCGTACCACTC+CGG - chr1.1:59362284-59362303 MS.gene74912:CDS 45.0%
CTAATATGGCTCCGTCTTTC+TGG - chr1.1:59363166-59363185 MS.gene74912:CDS 45.0%
GCATAACCAAACCTGGAATC+AGG + chr1.1:59362784-59362803 None:intergenic 45.0%
GGGAACCTATCCAACACAAA+TGG + chr1.1:59362920-59362939 None:intergenic 45.0%
GTCCCCAATTACTCAGTATG+CGG - chr1.1:59363006-59363025 MS.gene74912:intron 45.0%
TAGATCTCTCGCCATTGCTT+GGG - chr1.1:59362723-59362742 MS.gene74912:intron 45.0%
TGGATCCAAGCTTGGTACAT+AGG - chr1.1:59363134-59363153 MS.gene74912:CDS 45.0%
TGTGTGTTTGGATCCAAGCT+TGG - chr1.1:59363126-59363145 MS.gene74912:CDS 45.0%
! GATAGATGGTGATTTGCCGA+AGG - chr1.1:59363324-59363343 MS.gene74912:CDS 45.0%
! GGTGAGAAAGAGAGCCTTTT+TGG + chr1.1:59362457-59362476 None:intergenic 45.0%
!! CATCCTGTGGACTTGTTAGT+TGG - chr1.1:59363073-59363092 MS.gene74912:intron 45.0%
!! GACTTGTTAGTTGGTGTCGA+AGG - chr1.1:59363082-59363101 MS.gene74912:intron 45.0%
!! GTGCGTTGGCTTGAAATTCA+TGG - chr1.1:59362962-59362981 MS.gene74912:intron 45.0%
AGATCTCTCGCCATTGCTTG+GGG - chr1.1:59362724-59362743 MS.gene74912:intron 50.0%
AGTAATTGGGGACAAGGCAC+AGG + chr1.1:59362999-59363018 None:intergenic 50.0%
ATCATCGTCACCCCAAGCAA+TGG + chr1.1:59362737-59362756 None:intergenic 50.0%
CGATGAATTGGGGGTCAGAA+CGG + chr1.1:59362389-59362408 None:intergenic 50.0%
CGGAGTGGTACGAGATAGTA+TGG + chr1.1:59362286-59362305 None:intergenic 50.0%
CTAAGCTTCTTCACGTGCGT+TGG - chr1.1:59362948-59362967 MS.gene74912:intron 50.0%
CTAGATCTCTCGCCATTGCT+TGG - chr1.1:59362722-59362741 MS.gene74912:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.1:59363247-59363266 MS.gene74912:CDS 50.0%
GTCCTTGTGTGAGACGTGAT+GGG - chr1.1:59363227-59363246 MS.gene74912:CDS 50.0%
TGCCAACGCTCCTACCAAAA+AGG - chr1.1:59362440-59362459 MS.gene74912:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.1:59363246-59363265 MS.gene74912:CDS 50.0%
TGTGGACTTCTACACCTTCG+AGG + chr1.1:59363291-59363310 None:intergenic 50.0%
! GATGATAGGGCGCTCAGATA+GGG + chr1.1:59362478-59362497 None:intergenic 50.0%
! TGATGATAGGGCGCTCAGAT+AGG + chr1.1:59362479-59362498 None:intergenic 50.0%
!! AGCCTTTTTGGTAGGAGCGT+TGG + chr1.1:59362445-59362464 None:intergenic 50.0%
!! TTTGGTAGGAGCGTTGGCAA+TGG + chr1.1:59362439-59362458 None:intergenic 50.0%
AGCGGCAGAACGGAATGTCT+TGG + chr1.1:59362337-59362356 None:intergenic 55.0%
CACCCATCACGTCTCACACA+AGG + chr1.1:59363232-59363251 None:intergenic 55.0%
CGTCCTTGTGTGAGACGTGA+TGG - chr1.1:59363226-59363245 MS.gene74912:CDS 55.0%
GCTGTGCCTGATTCCAGGTT+TGG - chr1.1:59362775-59362794 MS.gene74912:intron 55.0%
GGATTGCTGTGCCTGATTCC+AGG - chr1.1:59362770-59362789 MS.gene74912:intron 55.0%
! CTTGTGTGAGACGTGATGGG+TGG - chr1.1:59363230-59363249 MS.gene74912:CDS 55.0%
!! GTAGGAGCGTTGGCAATGGA+AGG + chr1.1:59362435-59362454 None:intergenic 55.0%
!! TGTGAGACGTGATGGGTGGT+TGG - chr1.1:59363234-59363253 MS.gene74912:CDS 55.0%
ATGGCGGCAATGCACCCTTC+CGG + chr1.1:59362267-59362286 None:intergenic 60.0%
CGTCGGAATCAGCGGCAGAA+CGG + chr1.1:59362347-59362366 None:intergenic 60.0%
!! GGAGCGTTGGCAATGGAAGG+AGG + chr1.1:59362432-59362451 None:intergenic 60.0%
CGTACCACTCCGGCTGACGT+CGG - chr1.1:59362294-59362313 MS.gene74912:CDS 65.0%
GAGAACCTGCCGACGTCAGC+CGG + chr1.1:59362306-59362325 None:intergenic 65.0%
TGACGTCGGCAGGTTCTCCG+TGG - chr1.1:59362308-59362327 MS.gene74912:CDS 65.0%
! CCAGACGGCGTCGGAATCAG+CGG + chr1.1:59362355-59362374 None:intergenic 65.0%
!! CCGCTGATTCCGACGCCGTC+TGG - chr1.1:59362352-59362371 MS.gene74912:CDS 70.0%
CCACTCCGGCTGACGTCGGC+AGG - chr1.1:59362298-59362317 MS.gene74912:CDS 75.0%
CCTGCCGACGTCAGCCGGAG+TGG + chr1.1:59362301-59362320 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 59362231 59363396 59362231 ID=MS.gene74912
chr1.1 mRNA 59362231 59363396 59362231 ID=MS.gene74912.t1;Parent=MS.gene74912
chr1.1 exon 59363112 59363396 59363112 ID=MS.gene74912.t1.exon1;Parent=MS.gene74912.t1
chr1.1 CDS 59363112 59363396 59363112 ID=cds.MS.gene74912.t1;Parent=MS.gene74912.t1
chr1.1 exon 59362836 59362954 59362836 ID=MS.gene74912.t1.exon2;Parent=MS.gene74912.t1
chr1.1 CDS 59362836 59362954 59362836 ID=cds.MS.gene74912.t1;Parent=MS.gene74912.t1
chr1.1 exon 59362231 59362693 59362231 ID=MS.gene74912.t1.exon3;Parent=MS.gene74912.t1
chr1.1 CDS 59362231 59362693 59362231 ID=cds.MS.gene74912.t1;Parent=MS.gene74912.t1
Gene Sequence

>MS.gene74912

ATGCAAAACAGAATGGGAACGTTTGAAGAATTACCGGAAGGGTGCATTGCCGCCATACTATCTCGTACCACTCCGGCTGACGTCGGCAGGTTCTCCGTGGTTTCCAAGACATTCCGTTCTGCCGCTGATTCCGACGCCGTCTGGAATCATTTTCTCCGTTCTGACCCCCAATTCATCGACTTCATCATCTCACACTCTCCTCCTTCCATTGCCAACGCTCCTACCAAAAAGGCTCTCTTTCTCACCCTATCTGAGCGCCCTATCATCATCGACAATGCTCAAAAGGTATTCTTCTTTATAACCTCCTCCAATTTCTCGTATAATTGACAATTTGACTGTATAGTAAGAAAACACAGAGAGGGAGAAAATAGAAACTGAATTTAATTTTTGGATTTTGAAATGAAAATGCTAATAAATAAGTTATGTATATGTTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTATATGCTTGCTGCTAGATCTCTCGCCATTGCTTGGGGTGACGATGATCGATATTGCAAATGGATTGCTGTGCCTGATTCCAGGTTTGGTTATGCTTGAAACTATCAAAGTAACTTGTTAACTGAGAATCTTATCACAATCAATTACACTTGAAATGATTTTGTTACCCTTGGTTTACAACTTCCAAATTTTAGTCTCTATAAATACTCCATTTGTGTTGGATAGGTTCCCCAAAGTTGCTAAGCTTCTTCACGTGCGTTGGCTTGAAATTCATGGAAAGATAAACACCTGTGCCTTGTCCCCAATTACTCAGTATGCGGCTTATCTTGTGTTCAAGATGATTGCGGTATTTGGATTTGAGAATCATCCTGTGGACTTGTTAGTTGGTGTCGAAGGTAGCCATAGAAGCACTAAAATTGTGTGTTTGGATCCAAGCTTGGTACATAGGAACAAAGAACTAATATGGCTCCGTCTTTCTGGGACTAGTATGTCGCACAACAAAGTAGTAGGATTGCGACGTCCTTGTGTGAGACGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTTAATTTATGCCTCGAAGGTGTAGAAGTCCACATTAGTGTTATCGAGATAGATGGTGATTTGCCGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGACCTAAGGAAGACAATTGA
Protein sequence

>MS.gene74912.t1

MQNRMGTFEELPEGCIAAILSRTTPADVGRFSVVSKTFRSAADSDAVWNHFLRSDPQFIDFIISHSPPSIANAPTKKALFLTLSERPIIIDNAQKSFQLDRKSGKKCYMLAARSLAIAWGDDDRYCKWIAVPDSRFPKVAKLLHVRWLEIHGKINTCALSPITQYAAYLVFKMIAVFGFENHPVDLLVGVEGSHRSTKIVCLDPSLVHRNKELIWLRLSGTSMSHNKVVGLRRPCVRRDGWLEIEMGEFFNLCLEGVEVHISVIEIDGDLPKGNFFLEGIEVRPKEDN