Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74880.t1 | AES61144.1 | 86.7 | 285 | 23 | 1 | 1 | 285 | 11 | 280 | 1.50E-127 | 465.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74880.t1 | Q9ZVQ6 | 42.0 | 281 | 130 | 5 | 6 | 283 | 18 | 268 | 9.4e-57 | 221.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74880.t1 | G7I5M3 | 86.7 | 285 | 23 | 1 | 1 | 285 | 11 | 280 | 1.1e-127 | 465.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74880.t1 | MTR_1g079400 | 90.526 | 285 | 12 | 1 | 1 | 285 | 11 | 280 | 7.48e-180 | 496 |
MS.gene74880.t1 | MTR_1g079410 | 77.032 | 283 | 48 | 2 | 2 | 284 | 8 | 273 | 3.70e-159 | 444 |
MS.gene74880.t1 | MTR_1g079260 | 54.483 | 290 | 102 | 4 | 3 | 284 | 5 | 272 | 6.99e-103 | 301 |
MS.gene74880.t1 | MTR_1g079370 | 54.577 | 284 | 106 | 3 | 2 | 284 | 4 | 265 | 3.27e-99 | 291 |
MS.gene74880.t1 | MTR_1g100597 | 53.265 | 291 | 104 | 4 | 3 | 284 | 5 | 272 | 3.19e-97 | 287 |
MS.gene74880.t1 | MTR_1g079460 | 53.521 | 284 | 112 | 3 | 1 | 284 | 3 | 266 | 2.09e-94 | 280 |
MS.gene74880.t1 | MTR_1g079380 | 53.873 | 284 | 108 | 3 | 2 | 284 | 4 | 265 | 8.16e-92 | 274 |
MS.gene74880.t1 | MTR_1g079200 | 51.916 | 287 | 106 | 5 | 3 | 284 | 5 | 264 | 7.91e-89 | 265 |
MS.gene74880.t1 | MTR_1g079180 | 53.147 | 286 | 105 | 6 | 3 | 284 | 5 | 265 | 4.19e-88 | 263 |
MS.gene74880.t1 | MTR_1g079230 | 50.000 | 288 | 115 | 4 | 5 | 284 | 7 | 273 | 2.48e-85 | 257 |
MS.gene74880.t1 | MTR_1g100613 | 50.382 | 262 | 96 | 4 | 18 | 267 | 5 | 244 | 4.01e-80 | 242 |
MS.gene74880.t1 | MTR_3g452600 | 48.239 | 284 | 122 | 5 | 1 | 284 | 9 | 267 | 2.42e-79 | 241 |
MS.gene74880.t1 | MTR_1g079850 | 46.780 | 295 | 126 | 4 | 3 | 284 | 5 | 281 | 3.46e-77 | 236 |
MS.gene74880.t1 | MTR_1g079140 | 44.816 | 299 | 140 | 4 | 5 | 285 | 16 | 307 | 1.98e-75 | 233 |
MS.gene74880.t1 | MTR_1g026510 | 44.966 | 298 | 131 | 6 | 2 | 284 | 4 | 283 | 3.26e-75 | 232 |
MS.gene74880.t1 | MTR_1g079250 | 46.441 | 295 | 124 | 6 | 3 | 284 | 5 | 278 | 3.32e-73 | 227 |
MS.gene74880.t1 | MTR_2g079100 | 47.350 | 283 | 116 | 4 | 2 | 281 | 9 | 261 | 4.33e-73 | 225 |
MS.gene74880.t1 | MTR_3g006850 | 44.340 | 318 | 117 | 8 | 5 | 284 | 20 | 315 | 2.88e-71 | 222 |
MS.gene74880.t1 | MTR_3g450990 | 44.702 | 302 | 122 | 7 | 1 | 284 | 9 | 283 | 5.61e-70 | 218 |
MS.gene74880.t1 | MTR_7g112550 | 41.696 | 283 | 155 | 8 | 5 | 285 | 10 | 284 | 1.40e-62 | 199 |
MS.gene74880.t1 | MTR_1g083580 | 37.979 | 287 | 161 | 8 | 2 | 284 | 8 | 281 | 7.01e-61 | 194 |
MS.gene74880.t1 | MTR_1g079350 | 41.096 | 292 | 141 | 7 | 3 | 284 | 5 | 275 | 1.48e-58 | 188 |
MS.gene74880.t1 | MTR_1g079340 | 43.878 | 294 | 137 | 8 | 5 | 284 | 46 | 325 | 1.86e-57 | 187 |
MS.gene74880.t1 | MTR_7g096300 | 44.928 | 276 | 114 | 9 | 1 | 269 | 3 | 247 | 8.16e-54 | 186 |
MS.gene74880.t1 | MTR_7g112560 | 36.491 | 285 | 153 | 5 | 2 | 285 | 1 | 258 | 1.62e-53 | 175 |
MS.gene74880.t1 | MTR_1g078470 | 51.099 | 182 | 67 | 4 | 103 | 284 | 25 | 184 | 2.26e-46 | 154 |
MS.gene74880.t1 | MTR_4g023570 | 34.507 | 284 | 138 | 6 | 2 | 284 | 1 | 237 | 3.26e-44 | 150 |
MS.gene74880.t1 | MTR_1g079240 | 43.367 | 196 | 83 | 4 | 89 | 284 | 12 | 179 | 7.26e-39 | 134 |
MS.gene74880.t1 | MTR_1g079130 | 40.625 | 192 | 101 | 5 | 103 | 284 | 1 | 189 | 5.99e-37 | 130 |
MS.gene74880.t1 | MTR_1g076870 | 47.407 | 135 | 70 | 1 | 130 | 264 | 2 | 135 | 3.67e-30 | 110 |
MS.gene74880.t1 | MTR_1g079350 | 41.401 | 157 | 80 | 4 | 3 | 154 | 5 | 154 | 3.55e-26 | 102 |
MS.gene74880.t1 | MTR_2g042540 | 47.573 | 103 | 52 | 1 | 3 | 105 | 5 | 105 | 1.40e-22 | 90.9 |
MS.gene74880.t1 | MTR_7g096310 | 44.167 | 120 | 59 | 3 | 69 | 184 | 44 | 159 | 5.16e-22 | 90.5 |
MS.gene74880.t1 | MTR_1g078460 | 55.172 | 87 | 35 | 1 | 3 | 89 | 68 | 150 | 3.44e-21 | 87.8 |
MS.gene74880.t1 | MTR_7g103380 | 33.108 | 148 | 90 | 3 | 5 | 149 | 22 | 163 | 5.54e-21 | 90.9 |
MS.gene74880.t1 | MTR_1g079210 | 42.857 | 140 | 49 | 3 | 132 | 258 | 8 | 129 | 6.71e-21 | 86.7 |
MS.gene74880.t1 | MTR_3g058640 | 41.176 | 119 | 51 | 2 | 130 | 248 | 7 | 106 | 2.11e-17 | 76.3 |
MS.gene74880.t1 | MTR_4g102770 | 32.639 | 144 | 95 | 2 | 5 | 148 | 22 | 163 | 3.75e-15 | 74.3 |
MS.gene74880.t1 | MTR_1g101390 | 32.639 | 144 | 94 | 2 | 5 | 148 | 31 | 171 | 4.23e-15 | 74.3 |
MS.gene74880.t1 | MTR_0002s0020 | 30.405 | 148 | 99 | 2 | 5 | 149 | 25 | 171 | 5.29e-15 | 73.9 |
MS.gene74880.t1 | MTR_0113s0040 | 28.221 | 163 | 112 | 3 | 5 | 167 | 25 | 182 | 1.13e-13 | 70.1 |
MS.gene74880.t1 | MTR_5g010800 | 28.082 | 146 | 100 | 3 | 5 | 149 | 20 | 161 | 1.59e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74880.t1 | AT2G02360 | 42.199 | 282 | 130 | 6 | 5 | 283 | 17 | 268 | 1.54e-70 | 219 |
MS.gene74880.t1 | AT2G02230 | 36.688 | 308 | 162 | 7 | 3 | 284 | 33 | 333 | 2.12e-64 | 205 |
MS.gene74880.t1 | AT2G02340 | 41.053 | 285 | 144 | 5 | 5 | 285 | 39 | 303 | 7.03e-63 | 201 |
MS.gene74880.t1 | AT2G02250 | 38.947 | 285 | 145 | 6 | 1 | 283 | 46 | 303 | 2.57e-62 | 199 |
MS.gene74880.t1 | AT2G02240 | 38.163 | 283 | 147 | 6 | 2 | 283 | 61 | 316 | 6.23e-60 | 193 |
MS.gene74880.t1 | AT1G80110 | 39.643 | 280 | 140 | 5 | 5 | 283 | 4 | 255 | 1.89e-58 | 187 |
MS.gene74880.t1 | AT2G02350 | 36.770 | 291 | 143 | 7 | 2 | 283 | 24 | 282 | 1.41e-52 | 174 |
MS.gene74880.t1 | AT1G56250 | 38.832 | 291 | 158 | 6 | 4 | 285 | 3 | 282 | 1.44e-51 | 171 |
MS.gene74880.t1 | AT1G09155 | 36.934 | 287 | 167 | 6 | 4 | 284 | 2 | 280 | 3.26e-51 | 170 |
MS.gene74880.t1 | AT1G56240 | 39.100 | 289 | 156 | 7 | 4 | 283 | 3 | 280 | 1.68e-49 | 165 |
MS.gene74880.t1 | AT2G02310 | 34.155 | 284 | 158 | 5 | 5 | 285 | 48 | 305 | 2.29e-46 | 158 |
MS.gene74880.t1 | AT2G02320 | 33.569 | 283 | 157 | 6 | 5 | 283 | 43 | 298 | 3.65e-43 | 149 |
MS.gene74880.t1 | AT5G24560 | 38.756 | 209 | 107 | 4 | 5 | 212 | 6 | 194 | 5.71e-41 | 140 |
MS.gene74880.t1 | AT2G02300 | 34.708 | 291 | 135 | 9 | 5 | 285 | 37 | 282 | 3.67e-39 | 139 |
MS.gene74880.t1 | AT2G02350 | 32.105 | 190 | 95 | 6 | 103 | 283 | 1 | 165 | 2.60e-21 | 89.0 |
MS.gene74880.t1 | AT3G53000 | 26.316 | 285 | 180 | 9 | 5 | 283 | 24 | 284 | 3.57e-20 | 88.6 |
MS.gene74880.t1 | AT3G61060 | 30.986 | 142 | 95 | 2 | 5 | 146 | 28 | 166 | 3.16e-14 | 71.6 |
MS.gene74880.t1 | AT5G52120 | 30.921 | 152 | 100 | 2 | 2 | 149 | 21 | 171 | 3.58e-14 | 71.6 |
MS.gene74880.t1 | AT1G63090 | 32.414 | 145 | 94 | 2 | 5 | 149 | 29 | 169 | 1.82e-13 | 69.7 |
MS.gene74880.t1 | AT3G61060 | 29.577 | 142 | 98 | 1 | 5 | 146 | 28 | 167 | 3.46e-13 | 68.9 |
MS.gene74880.t1 | AT1G12710 | 30.345 | 145 | 97 | 2 | 5 | 149 | 31 | 171 | 4.57e-13 | 68.6 |
Find 60 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTTCTCTATCATCATATTC+TGG | 0.177035 | 1.1:+59043353 | None:intergenic |
CATTTATACGCATAGTTATT+TGG | 0.210406 | 1.1:+59043438 | None:intergenic |
AGTTGTATGCGACAATATTT+TGG | 0.232450 | 1.1:+59044231 | None:intergenic |
CAAATAACTATGCGTATAAA+TGG | 0.243746 | 1.1:-59043437 | MS.gene74880:CDS |
ATGGGAGAATTCTTTAATTC+AGG | 0.258142 | 1.1:-59043266 | MS.gene74880:CDS |
TCTCAACAACTTCATCTTCT+AGG | 0.271024 | 1.1:+59043243 | None:intergenic |
CATAATAGACAATGGTAAAA+AGG | 0.288236 | 1.1:-59044017 | MS.gene74880:intron |
TTACCATTGTCTATTATGAT+AGG | 0.311639 | 1.1:+59044022 | None:intergenic |
GGGTGACACTCCTCAATATT+GGG | 0.314388 | 1.1:-59043767 | MS.gene74880:CDS |
CAAGTAACTGTTGGTGTACT+TGG | 0.315902 | 1.1:-59043410 | MS.gene74880:CDS |
CTGCTAAATCAGATACTGTT+TGG | 0.323296 | 1.1:-59044159 | MS.gene74880:CDS |
TAGAGATATCTCCATTGCTT+TGG | 0.330371 | 1.1:-59043788 | MS.gene74880:CDS |
AGTGATATATAGAGACTTCT+TGG | 0.347188 | 1.1:+59044057 | None:intergenic |
TAAAATTCAGAGCTTTCAAT+TGG | 0.366503 | 1.1:-59043848 | MS.gene74880:intron |
TGGGTGACACTCCTCAATAT+TGG | 0.371925 | 1.1:-59043768 | MS.gene74880:CDS |
AGAGATATCTCCATTGCTTT+GGG | 0.391567 | 1.1:-59043787 | MS.gene74880:CDS |
AAATGTGGTTTCATTCTTGA+AGG | 0.403833 | 1.1:-59043188 | MS.gene74880:CDS |
TTCAAGATGATCAATGCCTT+TGG | 0.405685 | 1.1:-59043506 | MS.gene74880:CDS |
GTTCTCTATCATCATATTCT+GGG | 0.423782 | 1.1:+59043354 | None:intergenic |
CTAGGCTTCGTATAGTGTGC+TGG | 0.425024 | 1.1:-59043598 | MS.gene74880:CDS |
AGCTGCATATTGAGTATTTG+AGG | 0.429923 | 1.1:+59043538 | None:intergenic |
TGCTAAATCAGATACTGTTT+GGG | 0.437204 | 1.1:-59044158 | MS.gene74880:CDS |
GAGTTAACTGTGGGTGTACT+TGG | 0.452070 | 1.1:-59043464 | MS.gene74880:CDS |
TTAGGATCTGACCTGGAGTC+TGG | 0.458584 | 1.1:+59043730 | None:intergenic |
GAAAGCCGACATGAATCAAC+TGG | 0.459724 | 1.1:+59044208 | None:intergenic |
TCGGCTTTCACTTGTTTGCA+AGG | 0.462607 | 1.1:-59044194 | MS.gene74880:CDS |
GAACGAGATGACGAGTTTCA+AGG | 0.463915 | 1.1:-59043335 | MS.gene74880:CDS |
CGGCTTTCACTTGTTTGCAA+GGG | 0.468627 | 1.1:-59044193 | MS.gene74880:CDS |
GTGTGCTGGTTTGCATTTGA+AGG | 0.491002 | 1.1:-59043584 | MS.gene74880:CDS |
CAAACAAAGAGGAAGCAGAC+TGG | 0.504530 | 1.1:+59044092 | None:intergenic |
ATGATTGAGATCAAATCAGA+TGG | 0.512192 | 1.1:+59044124 | None:intergenic |
GACCTGGAGTCTGGTAGGAT+TGG | 0.514805 | 1.1:+59043739 | None:intergenic |
TAGAGACTTCTTGGAGGGAG+AGG | 0.515847 | 1.1:+59044066 | None:intergenic |
CCAGATTCAGAGAAGTTGCT+AGG | 0.515868 | 1.1:-59043616 | MS.gene74880:intron |
ACACTCCTCAATATTGGGAT+TGG | 0.518790 | 1.1:-59043762 | MS.gene74880:CDS |
AAACAAAGAGGAAGCAGACT+GGG | 0.536095 | 1.1:+59044093 | None:intergenic |
GGCCAATCCTACCAGACTCC+AGG | 0.549409 | 1.1:-59043741 | MS.gene74880:intron |
CATTGTCTATTATGATAGGA+TGG | 0.555364 | 1.1:+59044026 | None:intergenic |
GATATATAGAGACTTCTTGG+AGG | 0.564443 | 1.1:+59044060 | None:intergenic |
AGGAGTGTCACCCAAAGCAA+TGG | 0.570589 | 1.1:+59043777 | None:intergenic |
AGGAATTTCATCAAAACCAA+AGG | 0.577378 | 1.1:+59043490 | None:intergenic |
ATTGGCCAATCCCAATATTG+AGG | 0.587150 | 1.1:+59043757 | None:intergenic |
AGAGGTGGTCATTCAAAATG+TGG | 0.588995 | 1.1:-59043203 | MS.gene74880:CDS |
AGAAGATGAAGTTGTTGAGA+TGG | 0.589182 | 1.1:-59043240 | MS.gene74880:CDS |
AATGGAAAGCAAGTAACTGT+TGG | 0.589683 | 1.1:-59043419 | MS.gene74880:CDS |
AGACTTCTTGGAGGGAGAGG+TGG | 0.591367 | 1.1:+59044069 | None:intergenic |
GATCTGACCTGGAGTCTGGT+AGG | 0.592034 | 1.1:+59043734 | None:intergenic |
CAACTCCAGTTGATTCATGT+CGG | 0.598776 | 1.1:-59044213 | MS.gene74880:CDS |
ACACCCACAGTTAACTCGAT+AGG | 0.599349 | 1.1:+59043470 | None:intergenic |
GAAGATGAAGTTGTTGAGAT+GGG | 0.607457 | 1.1:-59043239 | MS.gene74880:CDS |
ATGGGTGCACTTGAGAATAG+AGG | 0.609253 | 1.1:-59043221 | MS.gene74880:CDS |
GGGAGAGGTGGCAAACAAAG+AGG | 0.613458 | 1.1:+59044081 | None:intergenic |
ATATATAGAGACTTCTTGGA+GGG | 0.621304 | 1.1:+59044061 | None:intergenic |
TGTGCTGGTTTGCATTTGAA+GGG | 0.624273 | 1.1:-59043583 | MS.gene74880:CDS |
ATTCCTATCGAGTTAACTGT+GGG | 0.634010 | 1.1:-59043473 | MS.gene74880:CDS |
CATCCTATCATAATAGACAA+TGG | 0.639517 | 1.1:-59044025 | MS.gene74880:CDS |
TGATTGAGATCAAATCAGAT+GGG | 0.649582 | 1.1:+59044125 | None:intergenic |
AATTCCTATCGAGTTAACTG+TGG | 0.659838 | 1.1:-59043474 | MS.gene74880:CDS |
GGTGCACTTGAGAATAGAGG+TGG | 0.690840 | 1.1:-59043218 | MS.gene74880:CDS |
TTTCAATTGGAGAAACAGAG+TGG | 0.693660 | 1.1:-59043835 | MS.gene74880:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATCTGAACTATTTAAA+TGG | - | chr1.1:59043548-59043567 | MS.gene74880:CDS | 15.0% |
!! | TTAGTAAAGAAAATCTAATT+AGG | + | chr1.1:59043716-59043735 | None:intergenic | 15.0% |
!! | AAATATCAACCAAAAATGTT+TGG | - | chr1.1:59044043-59044062 | MS.gene74880:CDS | 20.0% |
! | AGTAAAAATCGAAACTGATT+TGG | + | chr1.1:59043452-59043471 | None:intergenic | 25.0% |
! | CAAATAACTATGCGTATAAA+TGG | - | chr1.1:59043988-59044007 | MS.gene74880:intron | 25.0% |
! | CATAATAGACAATGGTAAAA+AGG | - | chr1.1:59043408-59043427 | MS.gene74880:CDS | 25.0% |
! | CATTTATACGCATAGTTATT+TGG | + | chr1.1:59043990-59044009 | None:intergenic | 25.0% |
! | TAAAATTCAGAGCTTTCAAT+TGG | - | chr1.1:59043577-59043596 | MS.gene74880:CDS | 25.0% |
! | TTACCATTGTCTATTATGAT+AGG | + | chr1.1:59043406-59043425 | None:intergenic | 25.0% |
AAATGTGGTTTCATTCTTGA+AGG | - | chr1.1:59044237-59044256 | MS.gene74880:CDS | 30.0% | |
AGGAATTTCATCAAAACCAA+AGG | + | chr1.1:59043938-59043957 | None:intergenic | 30.0% | |
AGTGATATATAGAGACTTCT+TGG | + | chr1.1:59043371-59043390 | None:intergenic | 30.0% | |
ATATATAGAGACTTCTTGGA+GGG | + | chr1.1:59043367-59043386 | None:intergenic | 30.0% | |
ATCAACCAAAAATGTTTGGT+TGG | - | chr1.1:59044047-59044066 | MS.gene74880:CDS | 30.0% | |
ATGATTGAGATCAAATCAGA+TGG | + | chr1.1:59043304-59043323 | None:intergenic | 30.0% | |
ATGGGAGAATTCTTTAATTC+AGG | - | chr1.1:59044159-59044178 | MS.gene74880:CDS | 30.0% | |
CATCCTATCATAATAGACAA+TGG | - | chr1.1:59043400-59043419 | MS.gene74880:CDS | 30.0% | |
CATTGTCTATTATGATAGGA+TGG | + | chr1.1:59043402-59043421 | None:intergenic | 30.0% | |
GTTCTCTATCATCATATTCT+GGG | + | chr1.1:59044074-59044093 | None:intergenic | 30.0% | |
TGATTGAGATCAAATCAGAT+GGG | + | chr1.1:59043303-59043322 | None:intergenic | 30.0% | |
TGCTAAATCAGATACTGTTT+GGG | - | chr1.1:59043267-59043286 | MS.gene74880:CDS | 30.0% | |
! | AATCCATCACTTCTCATTTT+TGG | + | chr1.1:59044126-59044145 | None:intergenic | 30.0% |
! | AGTTGTATGCGACAATATTT+TGG | + | chr1.1:59043197-59043216 | None:intergenic | 30.0% |
!!! | AATGAGAAGTGATGGATTTT+TGG | - | chr1.1:59044128-59044147 | MS.gene74880:CDS | 30.0% |
!!! | ACTTGTATTTTTTCTCGCAT+TGG | - | chr1.1:59043738-59043757 | MS.gene74880:intron | 30.0% |
!!! | TTGAAAGCTCTGAATTTTAG+TGG | + | chr1.1:59043576-59043595 | None:intergenic | 30.0% |
AATCTAATTAGGATCTGACC+TGG | + | chr1.1:59043705-59043724 | None:intergenic | 35.0% | |
AATGGAAAGCAAGTAACTGT+TGG | - | chr1.1:59044006-59044025 | MS.gene74880:intron | 35.0% | |
AATTCCTATCGAGTTAACTG+TGG | - | chr1.1:59043951-59043970 | MS.gene74880:intron | 35.0% | |
AGAAGATGAAGTTGTTGAGA+TGG | - | chr1.1:59044185-59044204 | MS.gene74880:CDS | 35.0% | |
AGAGATATCTCCATTGCTTT+GGG | - | chr1.1:59043638-59043657 | MS.gene74880:intron | 35.0% | |
AGCTGCATATTGAGTATTTG+AGG | + | chr1.1:59043890-59043909 | None:intergenic | 35.0% | |
ATTCCTATCGAGTTAACTGT+GGG | - | chr1.1:59043952-59043971 | MS.gene74880:intron | 35.0% | |
CGTTCTCTATCATCATATTC+TGG | + | chr1.1:59044075-59044094 | None:intergenic | 35.0% | |
CTGCTAAATCAGATACTGTT+TGG | - | chr1.1:59043266-59043285 | MS.gene74880:CDS | 35.0% | |
GAAGATGAAGTTGTTGAGAT+GGG | - | chr1.1:59044186-59044205 | MS.gene74880:CDS | 35.0% | |
GATATATAGAGACTTCTTGG+AGG | + | chr1.1:59043368-59043387 | None:intergenic | 35.0% | |
TAGAGATATCTCCATTGCTT+TGG | - | chr1.1:59043637-59043656 | MS.gene74880:intron | 35.0% | |
TCTCAACAACTTCATCTTCT+AGG | + | chr1.1:59044185-59044204 | None:intergenic | 35.0% | |
TTCAAGATGATCAATGCCTT+TGG | - | chr1.1:59043919-59043938 | MS.gene74880:intron | 35.0% | |
TTTCAATTGGAGAAACAGAG+TGG | - | chr1.1:59043590-59043609 | MS.gene74880:CDS | 35.0% | |
!! | GGATTTTTGGAGATCAAGAT+GGG | - | chr1.1:59044141-59044160 | MS.gene74880:CDS | 35.0% |
!! | TGGATTTTTGGAGATCAAGA+TGG | - | chr1.1:59044140-59044159 | MS.gene74880:CDS | 35.0% |
AAACAAAGAGGAAGCAGACT+GGG | + | chr1.1:59043335-59043354 | None:intergenic | 40.0% | |
ACACTCCTCAATATTGGGAT+TGG | - | chr1.1:59043663-59043682 | MS.gene74880:intron | 40.0% | |
AGAGGTGGTCATTCAAAATG+TGG | - | chr1.1:59044222-59044241 | MS.gene74880:CDS | 40.0% | |
ATTGGCCAATCCCAATATTG+AGG | + | chr1.1:59043671-59043690 | None:intergenic | 40.0% | |
CAAGTAACTGTTGGTGTACT+TGG | - | chr1.1:59044015-59044034 | MS.gene74880:intron | 40.0% | |
CGTCCAAAAATGAGAAGTGA+TGG | - | chr1.1:59044120-59044139 | MS.gene74880:CDS | 40.0% | |
! | CAACTCCAGTTGATTCATGT+CGG | - | chr1.1:59043212-59043231 | MS.gene74880:CDS | 40.0% |
! | TGGGTCCAACCAAACATTTT+TGG | + | chr1.1:59044055-59044074 | None:intergenic | 40.0% |
!! | TGTGCTGGTTTGCATTTGAA+GGG | - | chr1.1:59043842-59043861 | MS.gene74880:intron | 40.0% |
ACACCCACAGTTAACTCGAT+AGG | + | chr1.1:59043958-59043977 | None:intergenic | 45.0% | |
ATGGGTGCACTTGAGAATAG+AGG | - | chr1.1:59044204-59044223 | MS.gene74880:CDS | 45.0% | |
CAAACAAAGAGGAAGCAGAC+TGG | + | chr1.1:59043336-59043355 | None:intergenic | 45.0% | |
CCAGATTCAGAGAAGTTGCT+AGG | - | chr1.1:59043809-59043828 | MS.gene74880:CDS | 45.0% | |
CCTAGCAACTTCTCTGAATC+TGG | + | chr1.1:59043812-59043831 | None:intergenic | 45.0% | |
CGGCTTTCACTTGTTTGCAA+GGG | - | chr1.1:59043232-59043251 | MS.gene74880:CDS | 45.0% | |
GAAAGCCGACATGAATCAAC+TGG | + | chr1.1:59043220-59043239 | None:intergenic | 45.0% | |
GAACGAGATGACGAGTTTCA+AGG | - | chr1.1:59044090-59044109 | MS.gene74880:CDS | 45.0% | |
GAGTTAACTGTGGGTGTACT+TGG | - | chr1.1:59043961-59043980 | MS.gene74880:intron | 45.0% | |
GGGTGACACTCCTCAATATT+GGG | - | chr1.1:59043658-59043677 | MS.gene74880:intron | 45.0% | |
TCGGCTTTCACTTGTTTGCA+AGG | - | chr1.1:59043231-59043250 | MS.gene74880:CDS | 45.0% | |
TGGGTGACACTCCTCAATAT+TGG | - | chr1.1:59043657-59043676 | MS.gene74880:intron | 45.0% | |
! | ATGATAGAGGTTTTGCCGGA+GGG | - | chr1.1:59043163-59043182 | MS.gene74880:CDS | 45.0% |
!! | ATTTTGGCAATGCATCCCTC+CGG | + | chr1.1:59043181-59043200 | None:intergenic | 45.0% |
!! | GTGTGCTGGTTTGCATTTGA+AGG | - | chr1.1:59043841-59043860 | MS.gene74880:CDS | 45.0% |
CTAGGCTTCGTATAGTGTGC+TGG | - | chr1.1:59043827-59043846 | MS.gene74880:CDS | 50.0% | |
GGTGCACTTGAGAATAGAGG+TGG | - | chr1.1:59044207-59044226 | MS.gene74880:CDS | 50.0% | |
TAGAGACTTCTTGGAGGGAG+AGG | + | chr1.1:59043362-59043381 | None:intergenic | 50.0% | |
TTAGGATCTGACCTGGAGTC+TGG | + | chr1.1:59043698-59043717 | None:intergenic | 50.0% | |
!! | AGGAGTGTCACCCAAAGCAA+TGG | + | chr1.1:59043651-59043670 | None:intergenic | 50.0% |
AGACTTCTTGGAGGGAGAGG+TGG | + | chr1.1:59043359-59043378 | None:intergenic | 55.0% | |
GACCTGGAGTCTGGTAGGAT+TGG | + | chr1.1:59043689-59043708 | None:intergenic | 55.0% | |
GATCTGACCTGGAGTCTGGT+AGG | + | chr1.1:59043694-59043713 | None:intergenic | 55.0% | |
GGGAGAGGTGGCAAACAAAG+AGG | + | chr1.1:59043347-59043366 | None:intergenic | 55.0% | |
GGCCAATCCTACCAGACTCC+AGG | - | chr1.1:59043684-59043703 | MS.gene74880:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 59043163 | 59044284 | 59043163 | ID=MS.gene74880 |
chr1.1 | mRNA | 59043163 | 59044284 | 59043163 | ID=MS.gene74880.t1;Parent=MS.gene74880 |
chr1.1 | exon | 59044018 | 59044284 | 59044018 | ID=MS.gene74880.t1.exon1;Parent=MS.gene74880.t1 |
chr1.1 | CDS | 59044018 | 59044284 | 59044018 | ID=cds.MS.gene74880.t1;Parent=MS.gene74880.t1 |
chr1.1 | exon | 59043742 | 59043860 | 59043742 | ID=MS.gene74880.t1.exon2;Parent=MS.gene74880.t1 |
chr1.1 | CDS | 59043742 | 59043860 | 59043742 | ID=cds.MS.gene74880.t1;Parent=MS.gene74880.t1 |
chr1.1 | exon | 59043163 | 59043634 | 59043163 | ID=MS.gene74880.t1.exon3;Parent=MS.gene74880.t1 |
chr1.1 | CDS | 59043163 | 59043634 | 59043163 | ID=cds.MS.gene74880.t1;Parent=MS.gene74880.t1 |
Gene Sequence |
Protein sequence |