AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74868

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74868.t1 MTR_1g079260 93.455 275 17 1 1 274 1 275 0.0 535
MS.gene74868.t1 MTR_1g100597 72.464 276 73 2 1 274 1 275 3.22e-141 398
MS.gene74868.t1 MTR_1g079370 70.956 272 71 3 1 271 1 265 3.24e-141 397
MS.gene74868.t1 MTR_1g079180 70.909 275 66 6 1 271 1 265 6.74e-133 377
MS.gene74868.t1 MTR_1g079250 69.751 281 78 4 1 274 1 281 2.39e-131 374
MS.gene74868.t1 MTR_1g079460 69.928 276 70 3 1 272 1 267 5.03e-131 372
MS.gene74868.t1 MTR_1g079380 72.794 272 66 3 1 271 1 265 1.41e-130 372
MS.gene74868.t1 MTR_1g026510 64.685 286 89 5 1 274 1 286 4.79e-128 365
MS.gene74868.t1 MTR_1g079200 67.518 274 76 5 1 271 1 264 2.27e-124 355
MS.gene74868.t1 MTR_1g079850 64.561 285 89 5 1 274 1 284 4.93e-121 347
MS.gene74868.t1 MTR_1g079230 63.899 277 96 4 1 274 1 276 4.19e-116 334
MS.gene74868.t1 MTR_1g100613 68.571 245 70 3 16 254 1 244 1.82e-113 327
MS.gene74868.t1 MTR_3g006850 59.344 305 91 8 2 274 15 318 7.69e-106 310
MS.gene74868.t1 MTR_3g452600 61.852 270 89 7 4 271 10 267 2.49e-102 299
MS.gene74868.t1 MTR_1g079410 57.554 278 102 6 2 272 6 274 3.83e-100 294
MS.gene74868.t1 MTR_1g079140 52.881 295 111 7 4 271 13 306 4.55e-97 287
MS.gene74868.t1 MTR_1g079350 55.197 279 113 6 1 271 1 275 1.19e-92 275
MS.gene74868.t1 MTR_3g450990 55.944 286 96 9 4 271 10 283 1.05e-89 268
MS.gene74868.t1 MTR_2g079100 57.249 269 97 6 3 268 8 261 4.46e-88 263
MS.gene74868.t1 MTR_1g079400 50.526 285 111 5 2 271 10 279 2.33e-87 261
MS.gene74868.t1 MTR_7g112550 47.535 284 130 7 2 271 5 283 4.60e-79 241
MS.gene74868.t1 MTR_7g096300 57.692 260 83 8 1 251 1 242 1.85e-78 252
MS.gene74868.t1 MTR_1g079340 50.676 296 111 10 1 271 40 325 8.84e-76 234
MS.gene74868.t1 MTR_1g083580 43.929 280 139 7 4 271 8 281 6.51e-72 222
MS.gene74868.t1 MTR_1g078470 62.222 180 57 3 92 271 16 184 2.00e-71 218
MS.gene74868.t1 MTR_7g112560 42.279 272 138 7 4 271 1 257 5.35e-63 199
MS.gene74868.t1 MTR_1g079130 51.852 189 73 6 101 271 1 189 2.67e-53 172
MS.gene74868.t1 MTR_1g079240 51.351 185 73 3 87 271 12 179 5.34e-53 171
MS.gene74868.t1 MTR_4g023570 38.971 272 127 8 4 271 1 237 1.69e-52 171
MS.gene74868.t1 MTR_1g076870 63.043 138 33 4 128 251 2 135 3.95e-48 157
MS.gene74868.t1 MTR_1g079350 56.051 157 61 3 1 152 1 154 6.41e-48 159
MS.gene74868.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 1.23e-35 124
MS.gene74868.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 9.28e-35 123
MS.gene74868.t1 MTR_1g079210 57.258 124 45 3 129 245 7 129 4.64e-33 118
MS.gene74868.t1 MTR_7g096310 50.676 148 65 3 40 185 21 162 8.83e-33 118
MS.gene74868.t1 MTR_3g058640 53.211 109 42 2 128 236 7 106 3.74e-27 102
MS.gene74868.t1 MTR_4g083970 29.515 227 126 8 52 271 91 290 4.94e-26 103
MS.gene74868.t1 MTR_7g103380 26.502 283 174 6 6 272 21 285 1.12e-25 103
MS.gene74868.t1 MTR_0113s0040 24.825 286 172 5 2 272 20 277 1.21e-24 100
MS.gene74868.t1 MTR_1g101390 29.185 233 149 4 2 219 26 257 1.41e-24 100
MS.gene74868.t1 MTR_5g010800 35.374 147 86 5 6 147 19 161 7.61e-21 89.7
MS.gene74868.t1 MTR_0002s0020 27.962 211 132 3 6 197 24 233 4.63e-20 87.8
MS.gene74868.t1 MTR_4g102770 25.532 282 168 4 6 272 21 275 3.11e-19 85.5
MS.gene74868.t1 MTR_1g079220 55.405 74 24 2 165 238 1 65 1.42e-18 78.6
MS.gene74868.t1 MTR_1g079390 72.000 50 13 1 217 266 7 55 1.95e-18 77.4
MS.gene74868.t1 MTR_1g079840 42.400 125 22 2 142 266 20 94 4.41e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74868.t1 AT2G02250 45.725 269 132 4 4 270 47 303 3.66e-78 239
MS.gene74868.t1 AT2G02240 44.526 274 139 3 2 274 59 320 6.99e-76 234
MS.gene74868.t1 AT2G02360 42.491 273 137 5 2 270 12 268 2.21e-75 231
MS.gene74868.t1 AT2G02230 41.234 308 141 7 4 274 32 336 3.72e-75 233
MS.gene74868.t1 AT1G80110 46.617 266 126 5 7 270 4 255 2.96e-72 223
MS.gene74868.t1 AT2G02340 42.500 280 140 6 1 270 33 301 1.11e-71 223
MS.gene74868.t1 AT1G09155 43.369 279 143 6 7 271 3 280 4.08e-69 216
MS.gene74868.t1 AT1G56250 43.369 279 143 6 7 271 4 281 4.56e-63 200
MS.gene74868.t1 AT1G56240 43.165 278 143 6 7 270 4 280 6.41e-63 199
MS.gene74868.t1 AT2G02350 38.686 274 150 7 2 270 22 282 7.78e-56 182
MS.gene74868.t1 AT2G02310 36.364 275 159 5 2 272 43 305 2.06e-54 178
MS.gene74868.t1 AT2G02320 39.493 276 137 9 6 270 42 298 8.39e-53 174
MS.gene74868.t1 AT2G02300 37.500 280 137 10 2 272 32 282 9.78e-47 158
MS.gene74868.t1 AT5G24560 51.773 141 65 2 4 144 3 140 2.06e-44 149
MS.gene74868.t1 AT5G24560 59.184 49 20 0 224 272 145 193 1.01e-14 71.2
MS.gene74868.t1 AT3G53000 27.972 286 167 9 6 273 23 287 6.66e-28 109
MS.gene74868.t1 AT2G02350 34.286 175 100 5 101 270 1 165 1.51e-24 97.4
MS.gene74868.t1 AT4G19850 29.787 188 98 5 92 271 15 176 2.85e-21 88.6
MS.gene74868.t1 AT4G19850 29.787 188 98 5 92 271 57 218 3.79e-21 89.4
MS.gene74868.t1 AT1G12710 27.556 225 144 5 6 214 30 251 1.11e-19 86.7
MS.gene74868.t1 AT3G61060 25.177 282 169 10 6 272 27 281 6.75e-19 84.7
MS.gene74868.t1 AT1G33920 28.729 181 99 5 96 271 9 164 8.74e-19 81.6
MS.gene74868.t1 AT5G52120 27.273 209 129 4 1 188 18 224 5.70e-18 82.0
MS.gene74868.t1 AT3G61060 24.468 282 172 9 6 272 27 282 1.00e-17 81.3
MS.gene74868.t1 AT1G63090 27.602 221 139 6 6 209 28 244 1.46e-17 80.9
MS.gene74868.t1 AT4G19840 30.270 185 98 8 92 272 89 246 5.13e-17 78.6
MS.gene74868.t1 AT4G19850 29.605 152 75 4 92 237 57 182 2.94e-13 67.8
MS.gene74868.t1 AT1G12710 28.481 158 107 3 6 160 30 184 1.45e-12 67.0

Find 73 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGACTTCTTCATCTTCT+AGG 0.172241 1.1:+58920150 None:intergenic
TAAGTTACGTACAGAGTATT+TGG 0.193175 1.1:+58920410 None:intergenic
CTAGATCTCTTGCCATTACT+TGG 0.259697 1.1:-58924236 MS.gene74868:CDS
CATCATCGACAATGGTAAAA+AGG 0.276610 1.1:-58924417 MS.gene74868:intron
CGGCCGATTCCGACGCTGTT+TGG 0.288914 1.1:-58924547 MS.gene74868:CDS
TTAAGAGCAAACCTGGATTC+AGG 0.296897 1.1:+58924177 None:intergenic
AATGAGTGTTATTGATATAA+AGG 0.301571 1.1:-58920129 MS.gene74868:CDS
TTACCATTGTCGATGATGAT+AGG 0.322166 1.1:+58924422 None:intergenic
AGCCAACATTCCTGCCAAAA+AGG 0.323343 1.1:-58924471 MS.gene74868:CDS
TTATATCAATAACACTCATT+TGG 0.327990 1.1:+58920132 None:intergenic
CTGAACTTCTTCATGTGTGT+TGG 0.371115 1.1:-58920472 MS.gene74868:CDS
GACAGCCTTTGAAGAATTAC+CGG 0.371280 1.1:-58924654 MS.gene74868:CDS
TAGCAGTCCAGTTCCAATAT+TGG 0.371863 1.1:+58924202 None:intergenic
AAGTTACGTACAGAGTATTT+GGG 0.374400 1.1:+58920411 None:intergenic
TGAAGAAGTTCAGCAACTTC+AGG 0.399127 1.1:+58920482 None:intergenic
TTGTTGAAGGAATAGAAGTT+AGG 0.404080 1.1:-58920082 MS.gene74868:CDS
GTTGCTTAATGGTCTTCCTT+AGG 0.404567 1.1:+58920059 None:intergenic
GGGGTGACACTGACCAATAT+TGG 0.414125 1.1:-58924215 MS.gene74868:CDS
CAGCCATCGCTTCTAACATT+AGG 0.421791 1.1:+58920206 None:intergenic
TTGATATAAAGGGTGGTCAT+TGG 0.423881 1.1:-58920118 MS.gene74868:CDS
AAGAGAGGTTTCTTTGTTGA+AGG 0.432696 1.1:-58920095 MS.gene74868:CDS
TTTCAATTGGAGAGAAAGAG+TGG 0.437567 1.1:-58924282 MS.gene74868:CDS
ACACTGACCAATATTGGAAC+TGG 0.437942 1.1:-58924209 MS.gene74868:CDS
TAGATCTCTTGCCATTACTT+GGG 0.440419 1.1:-58924235 MS.gene74868:CDS
TGCAATCTTAATACTCTGTT+GGG 0.448837 1.1:+58920233 None:intergenic
TTGCAATCTTAATACTCTGT+TGG 0.450777 1.1:+58920232 None:intergenic
CGGTGCCTACGTCTCGCGTT+TGG 0.458821 1.1:+58920278 None:intergenic
ATGAGTGTTATTGATATAAA+GGG 0.461847 1.1:-58920128 MS.gene74868:CDS
GTTCCAAACAGCGTCGGAAT+CGG 0.465611 1.1:+58924544 None:intergenic
CACTAAAATTGTCTGTTTAG+CGG 0.473911 1.1:-58920303 MS.gene74868:CDS
ATTGCCGCGATGCAACCTTC+CGG 0.476904 1.1:+58924635 None:intergenic
TACCATTGTCGATGATGATA+GGG 0.481342 1.1:+58924423 None:intergenic
GAGATGGGAGAGTTCTTCTC+AGG 0.483764 1.1:-58920173 MS.gene74868:CDS
ATGATAGATGAGATATCAGA+AGG 0.493286 1.1:+58924512 None:intergenic
GAGTATTTGGGGACAAGGCA+AGG 0.505989 1.1:+58920423 None:intergenic
CGTCCTAATGTTAGAAGCGA+TGG 0.506737 1.1:-58920209 MS.gene74868:CDS
AAGGGTGGTCATTGGAAGAG+AGG 0.516527 1.1:-58920110 MS.gene74868:CDS
AGGAATAGAAGTTAGGCCTA+AGG 0.529851 1.1:-58920075 MS.gene74868:CDS
AGATCTCTTGCCATTACTTG+GGG 0.535874 1.1:-58924234 MS.gene74868:CDS
GGACTGCTATGCCTGAATCC+AGG 0.538247 1.1:-58924188 MS.gene74868:intron
TTCAAGATGATCAATGCCTA+TGG 0.539201 1.1:-58920380 MS.gene74868:CDS
TGATAGATGAGATATCAGAA+GGG 0.545185 1.1:+58924513 None:intergenic
GTCAGTGTCACCCCAAGTAA+TGG 0.546460 1.1:+58924224 None:intergenic
ACCTTCCGGTAATTCTTCAA+AGG 0.547313 1.1:+58924649 None:intergenic
GCAGGAATGTTGGCTAGGGA+AGG 0.549550 1.1:+58924479 None:intergenic
GAGAGTCTGCCAGCGTCGAG+TGG 0.557616 1.1:+58924596 None:intergenic
CCGTAGCAGAATTATAGTTA+CGG 0.558146 1.1:-58920258 MS.gene74868:CDS
TTTGGCAGGAATGTTGGCTA+GGG 0.561559 1.1:+58924475 None:intergenic
TGTTAGAAGCGATGGCTGGT+TGG 0.561669 1.1:-58920201 MS.gene74868:CDS
GTGTGTTGGCTTGAAATTCG+TGG 0.568809 1.1:-58920458 MS.gene74868:CDS
AAGAAAATTCTTAGAAACGA+GGG 0.571835 1.1:+58924574 None:intergenic
CTAATGTTAGAAGCGATGGC+TGG 0.579392 1.1:-58920205 MS.gene74868:CDS
CGCCCTATCATCATCGACAA+TGG 0.582859 1.1:-58924425 MS.gene74868:CDS
GGCTGGTTGGAGATTGAGAT+GGG 0.584901 1.1:-58920188 MS.gene74868:CDS
GCCTTTGAAGAATTACCGGA+AGG 0.593951 1.1:-58924650 MS.gene74868:CDS
ATATCAACTGATAACTCCAC+AGG 0.597089 1.1:+58920344 None:intergenic
TGGCTGGTTGGAGATTGAGA+TGG 0.597171 1.1:-58920189 MS.gene74868:CDS
TGTGTTGGCTTGAAATTCGT+GGG 0.601350 1.1:-58920457 MS.gene74868:CDS
AGTATTTGGGGACAAGGCAA+GGG 0.607982 1.1:+58920424 None:intergenic
CCGTAACTATAATTCTGCTA+CGG 0.609178 1.1:+58920258 None:intergenic
AGTGTTATTGATATAAAGGG+TGG 0.610510 1.1:-58920125 MS.gene74868:CDS
AGGATAGTACTCAAATCCAT+AGG 0.611119 1.1:+58920364 None:intergenic
AGTACAACTCCACTCGACGC+TGG 0.620670 1.1:-58924605 MS.gene74868:CDS
TGGATTTGAGTACTATCCTG+TGG 0.623491 1.1:-58920360 MS.gene74868:CDS
CGGATCCAAACGCGAGACGT+AGG 0.638605 1.1:-58920283 MS.gene74868:CDS
GTACAGAGTATTTGGGGACA+AGG 0.644660 1.1:+58920418 None:intergenic
GAGTTATCAGTTGATATCAA+AGG 0.645051 1.1:-58920338 MS.gene74868:CDS
AGATATCAGAAGGGAGAAAG+CGG 0.653922 1.1:+58924522 None:intergenic
AAAGCGGTTCCAAACAGCGT+CGG 0.655239 1.1:+58924538 None:intergenic
TTATCAGTTGATATCAAAGG+TGG 0.662875 1.1:-58920335 MS.gene74868:CDS
AGTTACGTACAGAGTATTTG+GGG 0.668148 1.1:+58920412 None:intergenic
AAAGAAAATTCTTAGAAACG+AGG 0.688137 1.1:+58924573 None:intergenic
ATTACCGGAAGGTTGCATCG+CGG 0.779652 1.1:-58924639 MS.gene74868:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTTATTAAATGTA+AGG - chr1.1:58921589-58921608 MS.gene74868:intron 10.0%
!!! ATTAAGCATTGAAAAAAAAT+AGG + chr1.1:58922210-58922229 None:intergenic 15.0%
!!! ATTTTTATAAATGTTATCCA+TGG - chr1.1:58921761-58921780 MS.gene74868:intron 15.0%
!!! CTAAAATATCTAAAACTATT+GGG + chr1.1:58924022-58924041 None:intergenic 15.0%
!!! TATTCCATTATTTTTACTAT+GGG - chr1.1:58922320-58922339 MS.gene74868:intron 15.0%
!!! TCTAAAATATCTAAAACTAT+TGG + chr1.1:58924023-58924042 None:intergenic 15.0%
!! AAAAAACTCATAGTTATAGA+TGG + chr1.1:58923025-58923044 None:intergenic 20.0%
!! AAAAACTCATAGTTATAGAT+GGG + chr1.1:58923024-58923043 None:intergenic 20.0%
!! AAAATCAGAAAAAAGAAAGT+TGG + chr1.1:58922550-58922569 None:intergenic 20.0%
!! AAATGAAATTCTATGTTGTT+TGG + chr1.1:58922612-58922631 None:intergenic 20.0%
!! ATATCATAAATTGTGATGTT+TGG - chr1.1:58922671-58922690 MS.gene74868:intron 20.0%
!! ATATCCATGGATAAAATAAA+CGG - chr1.1:58921302-58921321 MS.gene74868:intron 20.0%
!! GATAAACTTCTAAGTTATAT+TGG + chr1.1:58924090-58924109 None:intergenic 20.0%
!! GGTTATTTATGTAATTTACT+CGG + chr1.1:58921412-58921431 None:intergenic 20.0%
!! GTAAAATCACAAAGAAAAAA+TGG + chr1.1:58923619-58923638 None:intergenic 20.0%
!! TAGCTAAAATTTAGAAACAA+AGG + chr1.1:58921714-58921733 None:intergenic 20.0%
!! TATCATAAATTGTGATGTTT+GGG - chr1.1:58922672-58922691 MS.gene74868:intron 20.0%
!! TGTTAAATTATTCAATCCTA+AGG - chr1.1:58923279-58923298 MS.gene74868:intron 20.0%
!! TTAAACAATTTAGTCATACT+TGG - chr1.1:58924126-58924145 MS.gene74868:intron 20.0%
!! TTATATCAATAACACTCATT+TGG + chr1.1:58924591-58924610 None:intergenic 20.0%
!! TTTCTCGAATATTATTGAAT+TGG - chr1.1:58920348-58920367 MS.gene74868:CDS 20.0%
!!! AAAGACCATTTTAAATTTCA+AGG - chr1.1:58923169-58923188 MS.gene74868:intron 20.0%
!!! AAGACCATTTTAAATTTCAA+GGG - chr1.1:58923170-58923189 MS.gene74868:intron 20.0%
!!! AATGAGTGTTATTGATATAA+AGG - chr1.1:58924591-58924610 MS.gene74868:CDS 20.0%
!!! ATACATACAGACTTATTTTT+TGG + chr1.1:58923439-58923458 None:intergenic 20.0%
!!! ATGAGTGTTATTGATATAAA+GGG - chr1.1:58924592-58924611 MS.gene74868:CDS 20.0%
!!! ATTCCATTATTTTTACTATG+GGG - chr1.1:58922321-58922340 MS.gene74868:intron 20.0%
!!! CATAGTAAAAATAATGGAAT+AGG + chr1.1:58922321-58922340 None:intergenic 20.0%
!!! CTATTCCATTATTTTTACTA+TGG - chr1.1:58922319-58922338 MS.gene74868:intron 20.0%
!!! CTTTTTTCTGATTTTAATTG+TGG - chr1.1:58922555-58922574 MS.gene74868:intron 20.0%
!!! TAACAATTATGAAAAAGCAT+AGG + chr1.1:58923064-58923083 None:intergenic 20.0%
!!! TACATACAGACTTATTTTTT+GGG + chr1.1:58923438-58923457 None:intergenic 20.0%
! AAAGAAAATTCTTAGAAACG+AGG + chr1.1:58920150-58920169 None:intergenic 25.0%
! AAGAAAATTCTTAGAAACGA+GGG + chr1.1:58920149-58920168 None:intergenic 25.0%
! ACATCCCTTGAAATTTAAAA+TGG + chr1.1:58923177-58923196 None:intergenic 25.0%
! ATAATTGTTAGATACGTTCT+CGG - chr1.1:58923074-58923093 MS.gene74868:intron 25.0%
! ATCATAAATTGTGATGTTTG+GGG - chr1.1:58922673-58922692 MS.gene74868:intron 25.0%
! CGGATTTCATATTTATCTAA+CGG - chr1.1:58921852-58921871 MS.gene74868:intron 25.0%
! GAAAATAGTTTACAAAAGAG+AGG - chr1.1:58920708-58920727 MS.gene74868:intron 25.0%
! GAATCCAAAATCTAATGATT+TGG + chr1.1:58922174-58922193 None:intergenic 25.0%
! GATATGTTAATAGATATCCA+TGG - chr1.1:58921289-58921308 MS.gene74868:intron 25.0%
! GCATTGAAAAAAAATAGGAT+TGG + chr1.1:58922205-58922224 None:intergenic 25.0%
! TAATTTACTCGGTTTAATAG+CGG + chr1.1:58921401-58921420 None:intergenic 25.0%
! TAATTTGGCAGTTCTTAAAT+GGG + chr1.1:58922977-58922996 None:intergenic 25.0%
! TCTCATGTTGAAAAGAAATA+AGG - chr1.1:58920682-58920701 MS.gene74868:intron 25.0%
! TGCCTTTCAAATATCAAAAA+GGG + chr1.1:58923477-58923496 None:intergenic 25.0%
! TTAACAAGTATTCACTTAGA+AGG + chr1.1:58923265-58923284 None:intergenic 25.0%
!! ATTATTGAATTGGTCAGTTT+TGG - chr1.1:58920358-58920377 MS.gene74868:CDS 25.0%
!! GCTAATGGACATATATAATT+AGG + chr1.1:58922582-58922601 None:intergenic 25.0%
!! TATTATTGGCTAGCAAAAAA+GGG - chr1.1:58923115-58923134 MS.gene74868:intron 25.0%
!! TGAAATGTAGAGTTTTCAAT+TGG - chr1.1:58920425-58920444 MS.gene74868:CDS 25.0%
!! TGATCCAAATCATTAGATTT+TGG - chr1.1:58922167-58922186 MS.gene74868:intron 25.0%
!! TTATTATTGGCTAGCAAAAA+AGG - chr1.1:58923114-58923133 MS.gene74868:intron 25.0%
!! TTTGTGATTTTACTTTGTCA+TGG - chr1.1:58923626-58923645 MS.gene74868:intron 25.0%
!!! AAATCCGTTTATTTTATCCA+TGG + chr1.1:58921309-58921328 None:intergenic 25.0%
!!! GATTTTGAAACACTTATCTA+TGG + chr1.1:58921194-58921213 None:intergenic 25.0%
!!! TTCTAAGAATTTTCTTTCTG+CGG - chr1.1:58920153-58920172 MS.gene74868:CDS 25.0%
AAAAGAAACTGTACAGATGA+AGG + chr1.1:58922145-58922164 None:intergenic 30.0%
AAGCAATATAGACAACTACT+TGG + chr1.1:58923791-58923810 None:intergenic 30.0%
AATGCCAATATCTCTTGAAT+CGG - chr1.1:58922768-58922787 MS.gene74868:intron 30.0%
AATTTACTCGGTTTAATAGC+GGG + chr1.1:58921400-58921419 None:intergenic 30.0%
ACAGAAACATCATCACAAAA+TGG + chr1.1:58922423-58922442 None:intergenic 30.0%
ACCACCAAAAGTTGAAAATA+TGG + chr1.1:58921094-58921113 None:intergenic 30.0%
AGAAAATTTAAGAGCAAACC+TGG + chr1.1:58920553-58920572 None:intergenic 30.0%
AGAAACATCATCACAAAATG+GGG + chr1.1:58922421-58922440 None:intergenic 30.0%
AGACCCCATAGTAAAAATAA+TGG + chr1.1:58922327-58922346 None:intergenic 30.0%
AGTTATTACCCTCCTTTAAA+AGG - chr1.1:58921484-58921503 MS.gene74868:intron 30.0%
AGTTGCAAAGATAAGAATAC+AGG + chr1.1:58924192-58924211 None:intergenic 30.0%
ATATTCGAGAAATCAGTAGT+TGG + chr1.1:58920340-58920359 None:intergenic 30.0%
ATCAGTTTGAACTTGATTGA+AGG + chr1.1:58922268-58922287 None:intergenic 30.0%
ATCGAAAATACAACTTGGAA+TGG - chr1.1:58922093-58922112 MS.gene74868:intron 30.0%
ATGATAGATGAGATATCAGA+AGG + chr1.1:58920211-58920230 None:intergenic 30.0%
CACTAAAATTGTCTGTTTAG+CGG - chr1.1:58924417-58924436 MS.gene74868:intron 30.0%
CAGAAACATCATCACAAAAT+GGG + chr1.1:58922422-58922441 None:intergenic 30.0%
CTAATTTGGCAGTTCTTAAA+TGG + chr1.1:58922978-58922997 None:intergenic 30.0%
GAAAAAATGGTAACATGTAG+CGG + chr1.1:58923606-58923625 None:intergenic 30.0%
GACTACATGATAAAAGATCT+AGG + chr1.1:58922123-58922142 None:intergenic 30.0%
GATTCTATTTCCTATGTTAG+TGG - chr1.1:58921016-58921035 MS.gene74868:intron 30.0%
GCCTTTCAAATATCAAAAAG+GGG + chr1.1:58923476-58923495 None:intergenic 30.0%
GTGCCTTTCAAATATCAAAA+AGG + chr1.1:58923478-58923497 None:intergenic 30.0%
TAAGAATACAGGAACAATGT+AGG + chr1.1:58924181-58924200 None:intergenic 30.0%
TAGGAAGTTGAATGATATTG+AGG + chr1.1:58921433-58921452 None:intergenic 30.0%
TATTCGAGAAATCAGTAGTT+GGG + chr1.1:58920339-58920358 None:intergenic 30.0%
TGATAGATGAGATATCAGAA+GGG + chr1.1:58920210-58920229 None:intergenic 30.0%
TGCAATCTTAATACTCTGTT+GGG + chr1.1:58924490-58924509 None:intergenic 30.0%
TTAAGAATGCTAATTAGCGT+TGG - chr1.1:58920397-58920416 MS.gene74868:CDS 30.0%
TTAGGATACAGAAGCTAATT+TGG + chr1.1:58922992-58923011 None:intergenic 30.0%
TTCACTTAGAAGGAAATATG+AGG + chr1.1:58923255-58923274 None:intergenic 30.0%
TTCATATTTATCTAACGGAG+CGG - chr1.1:58921857-58921876 MS.gene74868:intron 30.0%
TTCTATCCACAATTATCATG+AGG - chr1.1:58923809-58923828 MS.gene74868:intron 30.0%
TTGCAATCTTAATACTCTGT+TGG + chr1.1:58924491-58924510 None:intergenic 30.0%
TTGTTGAAGGAATAGAAGTT+AGG - chr1.1:58924638-58924657 MS.gene74868:CDS 30.0%
TTTAACTACCCGCTAATTAA+TGG - chr1.1:58921329-58921348 MS.gene74868:intron 30.0%
! AAGTTACGTACAGAGTATTT+GGG + chr1.1:58924312-58924331 None:intergenic 30.0%
! AGTGTTATTGATATAAAGGG+TGG - chr1.1:58924595-58924614 MS.gene74868:CDS 30.0%
! CAACTTTTGTGCACATATTT+TGG - chr1.1:58924207-58924226 MS.gene74868:CDS 30.0%
! GAGTTATCAGTTGATATCAA+AGG - chr1.1:58924382-58924401 MS.gene74868:intron 30.0%
! TAAAGTATCATAATGCACAC+AGG - chr1.1:58922457-58922476 MS.gene74868:intron 30.0%
! TAAGTTACGTACAGAGTATT+TGG + chr1.1:58924313-58924332 None:intergenic 30.0%
! TCATGAACCTAAGCAATTTT+AGG - chr1.1:58920944-58920963 MS.gene74868:intron 30.0%
! TCCCCTTTTTGATATTTGAA+AGG - chr1.1:58923472-58923491 MS.gene74868:intron 30.0%
! TCGTGAAATTTTGTCCAATA+TGG - chr1.1:58923968-58923987 MS.gene74868:intron 30.0%
! TTATCAGTTGATATCAAAGG+TGG - chr1.1:58924385-58924404 MS.gene74868:intron 30.0%
!! ATTTGGGTATTTTTACCAGA+AGG + chr1.1:58921941-58921960 None:intergenic 30.0%
!! TTTCACTTCCTTTTAAAGGA+GGG + chr1.1:58921495-58921514 None:intergenic 30.0%
!! TTTGGGTATTTTTACCAGAA+GGG + chr1.1:58921940-58921959 None:intergenic 30.0%
!!! AGACAATTTTAGTGCTACTT+TGG + chr1.1:58924411-58924430 None:intergenic 30.0%
!!! TTTTTTTAAATCATGCCCAC+TGG + chr1.1:58920789-58920808 None:intergenic 30.0%
AAAAGGAAGTGAAAGTGGTT+GGG - chr1.1:58921501-58921520 MS.gene74868:intron 35.0%
AACAACAAGCTTAGTAAGTG+AGG + chr1.1:58920738-58920757 None:intergenic 35.0%
AAGAGAGCCTAAAATTGCTT+AGG + chr1.1:58920954-58920973 None:intergenic 35.0%
AAGAGAGGTTTCTTTGTTGA+AGG - chr1.1:58924625-58924644 MS.gene74868:CDS 35.0%
ACAACAAGCTTAGTAAGTGA+GGG + chr1.1:58920737-58920756 None:intergenic 35.0%
ACAATTATCATGAGGCAATG+AGG - chr1.1:58923817-58923836 MS.gene74868:intron 35.0%
ACCAATAAATCTACTGTCAG+TGG - chr1.1:58923651-58923670 MS.gene74868:intron 35.0%
ACTCATAGTTATAGATGGGT+TGG + chr1.1:58923020-58923039 None:intergenic 35.0%
ACTTCATGTGCTTGAGATTT+GGG + chr1.1:58921957-58921976 None:intergenic 35.0%
ACTTGGTTGTCCCAATATAA+GGG + chr1.1:58923774-58923793 None:intergenic 35.0%
AGGATAGTACTCAAATCCAT+AGG + chr1.1:58924359-58924378 None:intergenic 35.0%
ATAATGCACACAGGAATCTA+GGG - chr1.1:58922466-58922485 MS.gene74868:intron 35.0%
ATATCAACTGATAACTCCAC+AGG + chr1.1:58924379-58924398 None:intergenic 35.0%
ATCCGTATCCATTAATTAGC+GGG + chr1.1:58921340-58921359 None:intergenic 35.0%
CAATCAGCAGTTAGTAAAGA+AGG - chr1.1:58921122-58921141 MS.gene74868:intron 35.0%
CAATGAGGAATGTAGAAAAC+TGG - chr1.1:58923832-58923851 MS.gene74868:intron 35.0%
CATCATCGACAATGGTAAAA+AGG - chr1.1:58920303-58920322 MS.gene74868:CDS 35.0%
CATCCGTATCCATTAATTAG+CGG + chr1.1:58921341-58921360 None:intergenic 35.0%
CCAAAAGTTGAAAATATGGC+AGG + chr1.1:58921090-58921109 None:intergenic 35.0%
CCAACTTCAACCCTTATATT+GGG - chr1.1:58923761-58923780 MS.gene74868:intron 35.0%
CCGTAACTATAATTCTGCTA+CGG + chr1.1:58924465-58924484 None:intergenic 35.0%
CCGTAGCAGAATTATAGTTA+CGG - chr1.1:58924462-58924481 MS.gene74868:CDS 35.0%
CGACATTCCTGCATTATTAT+TGG - chr1.1:58923101-58923120 MS.gene74868:intron 35.0%
CTAAAACTATTGGGACTTTC+AGG + chr1.1:58924013-58924032 None:intergenic 35.0%
CTATTGTACTGAGAATCAAC+TGG - chr1.1:58921059-58921078 MS.gene74868:intron 35.0%
CTGTTATTGAGGTTCAGATT+CGG + chr1.1:58923317-58923336 None:intergenic 35.0%
CTTCTTTACTAACTGCTGAT+TGG + chr1.1:58921124-58921143 None:intergenic 35.0%
CTTGCATCGAAAATACAACT+TGG - chr1.1:58922088-58922107 MS.gene74868:intron 35.0%
GAATCATTCAAGCCCATTAA+TGG + chr1.1:58921001-58921020 None:intergenic 35.0%
GATAACACTCACAATACCTA+GGG + chr1.1:58921464-58921483 None:intergenic 35.0%
GCCGAAATAAAGCCATTAAT+GGG - chr1.1:58920986-58921005 MS.gene74868:intron 35.0%
GGAGAGTAGAAAAACAAAAC+TGG + chr1.1:58922934-58922953 None:intergenic 35.0%
GGGAATTCAGTACAACTTAA+GGG + chr1.1:58922401-58922420 None:intergenic 35.0%
TAAAAGGAAGTGAAAGTGGT+TGG - chr1.1:58921500-58921519 MS.gene74868:intron 35.0%
TACCATTGTCGATGATGATA+GGG + chr1.1:58920300-58920319 None:intergenic 35.0%
TACTATGGGGTCTTTAGATT+AGG - chr1.1:58922334-58922353 MS.gene74868:intron 35.0%
TACTTGGTTGTCCCAATATA+AGG + chr1.1:58923775-58923794 None:intergenic 35.0%
TAGATCTCTTGCCATTACTT+GGG - chr1.1:58920485-58920504 MS.gene74868:CDS 35.0%
TAGGCTCATCAACTAACATT+TGG + chr1.1:58924162-58924181 None:intergenic 35.0%
TCATTGCCTCATGATAATTG+TGG + chr1.1:58923818-58923837 None:intergenic 35.0%
TCCAACTTCAACCCTTATAT+TGG - chr1.1:58923760-58923779 MS.gene74868:intron 35.0%
TCCACTGACAGTAGATTTAT+TGG + chr1.1:58923655-58923674 None:intergenic 35.0%
TGAAACACTTATCTATGGCA+TGG + chr1.1:58921189-58921208 None:intergenic 35.0%
TGATAACACTCACAATACCT+AGG + chr1.1:58921465-58921484 None:intergenic 35.0%
TGATAGCCAAGTTAATCACT+TGG + chr1.1:58923714-58923733 None:intergenic 35.0%
TGATGTGAAATTCCCTTAGT+TGG + chr1.1:58922811-58922830 None:intergenic 35.0%
TGCCGAAATAAAGCCATTAA+TGG - chr1.1:58920985-58921004 MS.gene74868:intron 35.0%
TGTTATTGAGGTTCAGATTC+GGG + chr1.1:58923316-58923335 None:intergenic 35.0%
TTACCATTGTCGATGATGAT+AGG + chr1.1:58920301-58920320 None:intergenic 35.0%
TTAGTAAAGAAGGTTTGCCT+AGG - chr1.1:58921132-58921151 MS.gene74868:intron 35.0%
TTCAAAATCCATAGCCACTA+GGG - chr1.1:58921205-58921224 MS.gene74868:intron 35.0%
TTCAAGATGATCAATGCCTA+TGG - chr1.1:58924340-58924359 MS.gene74868:intron 35.0%
TTGATATAAAGGGTGGTCAT+TGG - chr1.1:58924602-58924621 MS.gene74868:CDS 35.0%
TTGCTAGCCAATAATAATGC+AGG + chr1.1:58923111-58923130 None:intergenic 35.0%
TTTCAAAATCCATAGCCACT+AGG - chr1.1:58921204-58921223 MS.gene74868:intron 35.0%
TTTCAATTGGAGAGAAAGAG+TGG - chr1.1:58920438-58920457 MS.gene74868:CDS 35.0%
TTTGGACTTCTTCATCTTCT+AGG + chr1.1:58924573-58924592 None:intergenic 35.0%
! AAAATTTTCACGCTCATGAG+TGG - chr1.1:58920639-58920658 MS.gene74868:intron 35.0%
! AAAGCCGATTCAAGAGATAT+TGG + chr1.1:58922775-58922794 None:intergenic 35.0%
! AACTGATTTCCTTCCAACTA+AGG - chr1.1:58922795-58922814 MS.gene74868:intron 35.0%
! AACTGGATTTCCTTTTTGTG+AGG - chr1.1:58923849-58923868 MS.gene74868:intron 35.0%
! ACTCATGAGCGTGAAAATTT+TGG + chr1.1:58920640-58920659 None:intergenic 35.0%
! ACTGATTTCCTTCCAACTAA+GGG - chr1.1:58922796-58922815 MS.gene74868:intron 35.0%
! ACTGGATTTCCTTTTTGTGA+GGG - chr1.1:58923850-58923869 MS.gene74868:intron 35.0%
! AGCAAGATAGAGATCCTTTT+TGG + chr1.1:58920266-58920285 None:intergenic 35.0%
! AGTTACGTACAGAGTATTTG+GGG + chr1.1:58924311-58924330 None:intergenic 35.0%
! AGTTGTATTTTCGATGCAAG+AGG + chr1.1:58922088-58922107 None:intergenic 35.0%
! ATTTTATCCGTGGATATCCA+CGG + chr1.1:58921250-58921269 None:intergenic 35.0%
! CAGTTGATTCTCAGTACAAT+AGG + chr1.1:58921061-58921080 None:intergenic 35.0%
! CCACTTTCACTTCCTTTTAA+AGG + chr1.1:58921499-58921518 None:intergenic 35.0%
! CCTGCCATATTTTCAACTTT+TGG - chr1.1:58921087-58921106 MS.gene74868:intron 35.0%
! CCTTTAAAAGGAAGTGAAAG+TGG - chr1.1:58921496-58921515 MS.gene74868:intron 35.0%
! CTAATTAATGGATACGGATG+CGG - chr1.1:58921341-58921360 MS.gene74868:intron 35.0%
! CTCATAGTTATAGATGGGTT+GGG + chr1.1:58923019-58923038 None:intergenic 35.0%
! CTGTTTCAGTTTTTGCACTT+AGG - chr1.1:58922906-58922925 MS.gene74868:intron 35.0%
! GAAAGAGTGGATTTCCATAT+TGG + chr1.1:58923985-58924004 None:intergenic 35.0%
! GCCATATTTTCAACTTTTGG+TGG - chr1.1:58921090-58921109 MS.gene74868:intron 35.0%
! TACCCGCTAATTAATGGATA+CGG - chr1.1:58921335-58921354 MS.gene74868:intron 35.0%
! TTCTATGTTGTTTGGCACTT+TGG + chr1.1:58922604-58922623 None:intergenic 35.0%
!! ATTAGGAAGAGTGTTGTTCT+TGG - chr1.1:58922351-58922370 MS.gene74868:intron 35.0%
!! CTTTCACTTCCTTTTAAAGG+AGG + chr1.1:58921496-58921515 None:intergenic 35.0%
!! GCCCATTAATGGCTTTATTT+CGG + chr1.1:58920990-58921009 None:intergenic 35.0%
!! TTGGGTATTTTTACCAGAAG+GGG + chr1.1:58921939-58921958 None:intergenic 35.0%
!! TTTGTGCACATATTTTGGAC+AGG - chr1.1:58924212-58924231 MS.gene74868:CDS 35.0%
!!! ATGGCTAGGGTTTTAAATTC+GGG + chr1.1:58920839-58920858 None:intergenic 35.0%
!!! GATGGCTAGGGTTTTAAATT+CGG + chr1.1:58920840-58920859 None:intergenic 35.0%
AAACGGATATGGATAGGGTA+CGG - chr1.1:58921832-58921851 MS.gene74868:intron 40.0%
AAACTCCATAATCCAAGCCA+TGG + chr1.1:58922005-58922024 None:intergenic 40.0%
AACACATTGAGTGCTAACCT+AGG + chr1.1:58921152-58921171 None:intergenic 40.0%
AATCTCAAGCACATGAAGTC+AGG - chr1.1:58921958-58921977 MS.gene74868:intron 40.0%
ACACTGACCAATATTGGAAC+TGG - chr1.1:58920511-58920530 MS.gene74868:intron 40.0%
ACCTTCCGGTAATTCTTCAA+AGG + chr1.1:58920074-58920093 None:intergenic 40.0%
AGATATCAGAAGGGAGAAAG+CGG + chr1.1:58920201-58920220 None:intergenic 40.0%
AGATCTCTTGCCATTACTTG+GGG - chr1.1:58920486-58920505 MS.gene74868:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.1:58924645-58924664 MS.gene74868:CDS 40.0%
ATACAACTGACCAGCATATG+TGG + chr1.1:58922719-58922738 None:intergenic 40.0%
CAACAAGCTTAGTAAGTGAG+GGG + chr1.1:58920736-58920755 None:intergenic 40.0%
CACAAACTGACCACTAACAT+AGG + chr1.1:58921029-58921048 None:intergenic 40.0%
CATAATGCACACAGGAATCT+AGG - chr1.1:58922465-58922484 MS.gene74868:intron 40.0%
CCCAATATAAGGGTTGAAGT+TGG + chr1.1:58923764-58923783 None:intergenic 40.0%
CGGGTTTATACAGATATCCA+TGG + chr1.1:58921781-58921800 None:intergenic 40.0%
CTAGATCTCTTGCCATTACT+TGG - chr1.1:58920484-58920503 MS.gene74868:CDS 40.0%
CTGAACCTCAATAACAGTGT+TGG - chr1.1:58923320-58923339 MS.gene74868:intron 40.0%
CTGAACTTCTTCATGTGTGT+TGG - chr1.1:58924248-58924267 MS.gene74868:CDS 40.0%
CTGGTTCAACTTTATGTGTG+GGG + chr1.1:58920884-58920903 None:intergenic 40.0%
CTGTCAAATGCAAGAGATGT+TGG + chr1.1:58922879-58922898 None:intergenic 40.0%
GAAGATATGAGAACCTAGTC+AGG + chr1.1:58923502-58923521 None:intergenic 40.0%
GACTTCATGTGCTTGAGATT+TGG + chr1.1:58921958-58921977 None:intergenic 40.0%
GATCACCAACACTGTTATTG+AGG + chr1.1:58923328-58923347 None:intergenic 40.0%
GCTAGCAAAAAAGGGTAGAA+AGG - chr1.1:58923123-58923142 MS.gene74868:intron 40.0%
GGGATGTAAATGGATATCCA+CGG + chr1.1:58921907-58921926 None:intergenic 40.0%
GGGGAATTCAGTACAACTTA+AGG + chr1.1:58922402-58922421 None:intergenic 40.0%
GTAGTGAGAGAAGCTGAAAA+TGG + chr1.1:58923221-58923240 None:intergenic 40.0%
GTGAAATTCCCTTAGTTGGA+AGG + chr1.1:58922807-58922826 None:intergenic 40.0%
GTGGCTATTAGGGATGTAAA+TGG + chr1.1:58921917-58921936 None:intergenic 40.0%
TAAATGGATATCCACGGATG+CGG + chr1.1:58921901-58921920 None:intergenic 40.0%
TACAACTGACCAGCATATGT+GGG + chr1.1:58922718-58922737 None:intergenic 40.0%
TAGATAAGTAAGCCATCAGC+TGG + chr1.1:58923923-58923942 None:intergenic 40.0%
TAGCAGTCCAGTTCCAATAT+TGG + chr1.1:58920521-58920540 None:intergenic 40.0%
TCATCTTCTCCCTCACAAAA+AGG + chr1.1:58923862-58923881 None:intergenic 40.0%
TGAAGAAGTTCAGCAACTTC+AGG + chr1.1:58924241-58924260 None:intergenic 40.0%
TGGATATCTGTATAAACCCG+CGG - chr1.1:58921781-58921800 MS.gene74868:intron 40.0%
TGGATTTGAGTACTATCCTG+TGG - chr1.1:58924360-58924379 MS.gene74868:intron 40.0%
TGGGCAACATAACTATTGTC+AGG + chr1.1:58923419-58923438 None:intergenic 40.0%
TTAAGAGCAAACCTGGATTC+AGG + chr1.1:58920546-58920565 None:intergenic 40.0%
TTGTTTGGCACTTTGGCTAA+TGG + chr1.1:58922597-58922616 None:intergenic 40.0%
! AATACCTAGGGTGCTTTCTT+AGG + chr1.1:58921452-58921471 None:intergenic 40.0%
! CTTTCAGGAGTATGAAAGAG+TGG + chr1.1:58923998-58924017 None:intergenic 40.0%
! GACAGCCTTTGAAGAATTAC+CGG - chr1.1:58920066-58920085 MS.gene74868:CDS 40.0%
! GAGATGGAACTGTGTTGATA+AGG + chr1.1:58922955-58922974 None:intergenic 40.0%
! GCTGGTTCAACTTTATGTGT+GGG + chr1.1:58920885-58920904 None:intergenic 40.0%
! TTTTAGACAAGATCCACCAC+TGG - chr1.1:58924036-58924055 MS.gene74868:intron 40.0%
!! AGATAGAGATCCTTTTTGGC+AGG + chr1.1:58920262-58920281 None:intergenic 40.0%
!! ATCCTTTTTGGCAGGAATGT+TGG + chr1.1:58920254-58920273 None:intergenic 40.0%
!! TGTGTTGGCTTGAAATTCGT+GGG - chr1.1:58924263-58924282 MS.gene74868:CDS 40.0%
!!! GAGCGTGAAAATTTTGGTTG+TGG + chr1.1:58920634-58920653 None:intergenic 40.0%
!!! GATTTTTTTGCCATCCCTAG+TGG + chr1.1:58921222-58921241 None:intergenic 40.0%
AAATCCATAGCCACTAGGGA+TGG - chr1.1:58921209-58921228 MS.gene74868:intron 45.0%
ACGCTCATGAGTGGTGTATT+GGG - chr1.1:58920648-58920667 MS.gene74868:intron 45.0%
ACTTAGCTGAAGCGAAGTGA+AGG + chr1.1:58922031-58922050 None:intergenic 45.0%
AGATCCAAGCTCATATCCAG+TGG - chr1.1:58920770-58920789 MS.gene74868:intron 45.0%
AGCCAACATTCCTGCCAAAA+AGG - chr1.1:58920249-58920268 MS.gene74868:CDS 45.0%
AGCCTATGCAGAAGCTGAAT+AGG - chr1.1:58923554-58923573 MS.gene74868:intron 45.0%
AGGCCTAAGGAAGACCATTA+AGG - chr1.1:58924658-58924677 MS.gene74868:CDS 45.0%
AGTATTTGGGGACAAGGCAA+GGG + chr1.1:58924299-58924318 None:intergenic 45.0%
CAGCCATCGCTTCTAACATT+AGG + chr1.1:58924517-58924536 None:intergenic 45.0%
CCCTATCCATATCCGTTTAG+CGG + chr1.1:58921830-58921849 None:intergenic 45.0%
CCGCTAAACGGATATGGATA+GGG - chr1.1:58921827-58921846 MS.gene74868:intron 45.0%
CCTATCCATATCCGTTTAGC+GGG + chr1.1:58921829-58921848 None:intergenic 45.0%
CGTCCTAATGTTAGAAGCGA+TGG - chr1.1:58924511-58924530 MS.gene74868:CDS 45.0%
CTAATGTTAGAAGCGATGGC+TGG - chr1.1:58924515-58924534 MS.gene74868:CDS 45.0%
GAATGTTGCAGTTCTCAAGC+TGG - chr1.1:58923880-58923899 MS.gene74868:intron 45.0%
GATCCAAGCTCATATCCAGT+GGG - chr1.1:58920771-58920790 MS.gene74868:intron 45.0%
GATTACCCGCTAAACGGATA+TGG - chr1.1:58921821-58921840 MS.gene74868:intron 45.0%
GCCAAGTTAATCACTTGGCA+CGG + chr1.1:58923709-58923728 None:intergenic 45.0%
GGATACGGATGCGGATTTAA+TGG - chr1.1:58921350-58921369 MS.gene74868:intron 45.0%
GGCAGTTCTTAAATGGGAGA+TGG + chr1.1:58922971-58922990 None:intergenic 45.0%
GGCCTAAGGAAGACCATTAA+GGG - chr1.1:58924659-58924678 MS.gene74868:CDS 45.0%
TAGTCAGCAGGATGACTTGA+TGG + chr1.1:58920858-58920877 None:intergenic 45.0%
TCCACGGATAAAATCCGTCA+CGG - chr1.1:58921256-58921275 MS.gene74868:intron 45.0%
TCGGGTGTACAGTAAACCTT+AGG + chr1.1:58923298-58923317 None:intergenic 45.0%
TTCTGCATAGGCTTTGCAAG+TGG + chr1.1:58923547-58923566 None:intergenic 45.0%
TTTAATGGTATCCACACCCG+CGG - chr1.1:58921365-58921384 MS.gene74868:intron 45.0%
TTTATCTAACGGAGCGGACA+CGG - chr1.1:58921863-58921882 MS.gene74868:intron 45.0%
! GCCTTTGAAGAATTACCGGA+AGG - chr1.1:58920070-58920089 MS.gene74868:CDS 45.0%
! GGCTGGTTCAACTTTATGTG+TGG + chr1.1:58920886-58920905 None:intergenic 45.0%
! GTACAGAGTATTTGGGGACA+AGG + chr1.1:58924305-58924324 None:intergenic 45.0%
! TTTGAAAGGCACACCTGACT+AGG - chr1.1:58923486-58923505 MS.gene74868:intron 45.0%
! TTTGGCAGGAATGTTGGCTA+GGG + chr1.1:58920248-58920267 None:intergenic 45.0%
!! ACTTCCTAAGAAAGCACCCT+AGG - chr1.1:58921445-58921464 MS.gene74868:intron 45.0%
!! AGAGTGTTGTTCTTGGTGAC+CGG - chr1.1:58922358-58922377 MS.gene74868:intron 45.0%
!! ATAGATGGGTTGGGAGACTT+AGG + chr1.1:58923010-58923029 None:intergenic 45.0%
!! ATAGCGGGTATGAATATCCG+CGG + chr1.1:58921385-58921404 None:intergenic 45.0%
!! GGTATTTTTACCAGAAGGGG+TGG + chr1.1:58921936-58921955 None:intergenic 45.0%
!! GTGTGTTGGCTTGAAATTCG+TGG - chr1.1:58924262-58924281 MS.gene74868:CDS 45.0%
!! TTTTGGCAGGAATGTTGGCT+AGG + chr1.1:58920249-58920268 None:intergenic 45.0%
!!! GCAGTTCTCAAGCTGGTTTT+CGG - chr1.1:58923887-58923906 MS.gene74868:intron 45.0%
!!! TTTATTTTTATTAAATGTAA+GGG - chr1.1:58921590-58921609 MS.gene74868:intron 5.0%
AAAGCGGTTCCAAACAGCGT+CGG + chr1.1:58920185-58920204 None:intergenic 50.0%
AAGGGTGGTCATTGGAAGAG+AGG - chr1.1:58924610-58924629 MS.gene74868:CDS 50.0%
ACCAGAAGGGGTGGCTATTA+GGG + chr1.1:58921927-58921946 None:intergenic 50.0%
AGAACTAGAGGTCTGTTGCG+CGG - chr1.1:58920921-58920940 MS.gene74868:intron 50.0%
ATGCCCACTGGATATGAGCT+TGG + chr1.1:58920777-58920796 None:intergenic 50.0%
ATTACCGGAAGGTTGCATCG+CGG - chr1.1:58920081-58920100 MS.gene74868:CDS 50.0%
CAACTTAAGGGTTACGAGCC+TGG + chr1.1:58922389-58922408 None:intergenic 50.0%
CACGCTCATGAGTGGTGTAT+TGG - chr1.1:58920647-58920666 MS.gene74868:intron 50.0%
CCACGGATAAAATCCGTCAC+GGG - chr1.1:58921257-58921276 MS.gene74868:intron 50.0%
CCCGCTAAACGGATATGGAT+AGG - chr1.1:58921826-58921845 MS.gene74868:intron 50.0%
CGAAGTTTCTGATGCCACCA+TGG - chr1.1:58921985-58922004 MS.gene74868:intron 50.0%
CGCCCTATCATCATCGACAA+TGG - chr1.1:58920295-58920314 MS.gene74868:CDS 50.0%
CGCGGATACCTCAAAATCCA+CGG - chr1.1:58921799-58921818 MS.gene74868:intron 50.0%
CTCCATAATCCAAGCCATGG+TGG + chr1.1:58922002-58922021 None:intergenic 50.0%
GAGATGGGAGAGTTCTTCTC+AGG - chr1.1:58924547-58924566 MS.gene74868:CDS 50.0%
GAGTATTTGGGGACAAGGCA+AGG + chr1.1:58924300-58924319 None:intergenic 50.0%
GCCGTGCCAAGTGATTAACT+TGG - chr1.1:58923705-58923724 MS.gene74868:intron 50.0%
GCTGAATAGGCCACATGTGT+TGG - chr1.1:58923567-58923586 MS.gene74868:intron 50.0%
GGCAAAAAAATCCGCATCCG+TGG - chr1.1:58921230-58921249 MS.gene74868:intron 50.0%
GGCCTATTCAGCTTCTGCAT+AGG + chr1.1:58923559-58923578 None:intergenic 50.0%
GGGGTGACACTGACCAATAT+TGG - chr1.1:58920505-58920524 MS.gene74868:intron 50.0%
GGTGGCATCAGAAACTTCGT+TGG + chr1.1:58921984-58922003 None:intergenic 50.0%
GTCAGTGTCACCCCAAGTAA+TGG + chr1.1:58920499-58920518 None:intergenic 50.0%
TACCAGAAGGGGTGGCTATT+AGG + chr1.1:58921928-58921947 None:intergenic 50.0%
TATCACACTATCCGCATCCG+TGG - chr1.1:58921887-58921906 MS.gene74868:intron 50.0%
TGACCAGCATATGTGGGACT+GGG + chr1.1:58922712-58922731 None:intergenic 50.0%
TGCAAGTGTGCCAACACATG+TGG + chr1.1:58923580-58923599 None:intergenic 50.0%
TGTGTGGGGTTATAGTCAGC+AGG + chr1.1:58920870-58920889 None:intergenic 50.0%
TGTTAGAAGCGATGGCTGGT+TGG - chr1.1:58924519-58924538 MS.gene74868:CDS 50.0%
TTTCTGATGCCACCATGGCT+TGG - chr1.1:58921990-58922009 MS.gene74868:intron 50.0%
TTTGCCATCCCTAGTGGCTA+TGG + chr1.1:58921216-58921235 None:intergenic 50.0%
! AGCAGGATGACTTGATGGCT+AGG + chr1.1:58920853-58920872 None:intergenic 50.0%
! AGTTCTGGCGATGGACAGAT+CGG + chr1.1:58920907-58920926 None:intergenic 50.0%
! CGGGTAATCCGTGGATTTTG+AGG + chr1.1:58921810-58921829 None:intergenic 50.0%
! GAGTGTTGTTCTTGGTGACC+GGG - chr1.1:58922359-58922378 MS.gene74868:intron 50.0%
! GCACACAGGAATCTAGGGTT+GGG - chr1.1:58922471-58922490 MS.gene74868:intron 50.0%
! GCAGGATGACTTGATGGCTA+GGG + chr1.1:58920852-58920871 None:intergenic 50.0%
! GGCTGGTTGGAGATTGAGAT+GGG - chr1.1:58924532-58924551 MS.gene74868:CDS 50.0%
! GTTCCAAACAGCGTCGGAAT+CGG + chr1.1:58920179-58920198 None:intergenic 50.0%
! TAGCGGGTATGAATATCCGC+GGG + chr1.1:58921384-58921403 None:intergenic 50.0%
! TCCACGGATTACCCGCTAAA+CGG - chr1.1:58921815-58921834 MS.gene74868:intron 50.0%
! TGCACACAGGAATCTAGGGT+TGG - chr1.1:58922470-58922489 MS.gene74868:intron 50.0%
! TGCCACCATGGCTTGGATTA+TGG - chr1.1:58921997-58922016 MS.gene74868:intron 50.0%
! TGGCTGGTTGGAGATTGAGA+TGG - chr1.1:58924531-58924550 MS.gene74868:CDS 50.0%
!!! CGTGGATTTTGAGGTATCCG+CGG + chr1.1:58921801-58921820 None:intergenic 50.0%
!!! GTGGATTTTGAGGTATCCGC+GGG + chr1.1:58921800-58921819 None:intergenic 50.0%
AATCCGTCACGGGTACAGAG+CGG - chr1.1:58921267-58921286 MS.gene74868:intron 55.0%
AGTACAACTCCACTCGACGC+TGG - chr1.1:58920115-58920134 MS.gene74868:CDS 55.0%
ATCACTTGGCACGGCTGCAA+AGG + chr1.1:58923700-58923719 None:intergenic 55.0%
ATTGCCGCGATGCAACCTTC+CGG + chr1.1:58920088-58920107 None:intergenic 55.0%
CTGACCAGCATATGTGGGAC+TGG + chr1.1:58922713-58922732 None:intergenic 55.0%
CTGTCCATCGCCAGAACTAG+AGG - chr1.1:58920909-58920928 MS.gene74868:intron 55.0%
GGACTGCTATGCCTGAATCC+AGG - chr1.1:58920532-58920551 MS.gene74868:intron 55.0%
GGTATGAATATCCGCGGGTG+TGG + chr1.1:58921379-58921398 None:intergenic 55.0%
GGTCGTTGTAGTCCAGCTGA+TGG - chr1.1:58923908-58923927 MS.gene74868:intron 55.0%
GGTTACGAGCCTGGTATACC+CGG + chr1.1:58922380-58922399 None:intergenic 55.0%
TATCCGCTCTGTACCCGTGA+CGG + chr1.1:58921273-58921292 None:intergenic 55.0%
TCCCTAATAGCCACCCCTTC+TGG - chr1.1:58921923-58921942 MS.gene74868:intron 55.0%
TCCGCATCCGTGGATATCCA+CGG - chr1.1:58921240-58921259 MS.gene74868:intron 55.0%
TCCGTGGATATCCACGGATG+CGG + chr1.1:58921244-58921263 None:intergenic 55.0%
TGGGACTGGGCACACAGTAT+GGG + chr1.1:58922699-58922718 None:intergenic 55.0%
! GCAGGAATGTTGGCTAGGGA+AGG + chr1.1:58920244-58920263 None:intergenic 55.0%
! GCGCAACAGACCTCTAGTTC+TGG + chr1.1:58920922-58920941 None:intergenic 55.0%
! TCCGTTTAGCGGGTAATCCG+TGG + chr1.1:58921819-58921838 None:intergenic 55.0%
! TCTTGGTGACCGGGTATACC+AGG - chr1.1:58922368-58922387 MS.gene74868:intron 55.0%
!! CAGACCTCTAGTTCTGGCGA+TGG + chr1.1:58920916-58920935 None:intergenic 55.0%
!!! CCCGTGACGGATTTTATCCG+TGG + chr1.1:58921260-58921279 None:intergenic 55.0%
CGGATCCAAACGCGAGACGT+AGG - chr1.1:58924437-58924456 MS.gene74868:CDS 60.0%
GTGCCCAGTCCCACATATGC+TGG - chr1.1:58922706-58922725 MS.gene74868:intron 60.0%
GTGGGACTGGGCACACAGTA+TGG + chr1.1:58922700-58922719 None:intergenic 60.0%
CGGTGCCTACGTCTCGCGTT+TGG + chr1.1:58924445-58924464 None:intergenic 65.0%
CTGGCGATGGACAGATCGGC+TGG + chr1.1:58920903-58920922 None:intergenic 65.0%
! CGGCCGATTCCGACGCTGTT+TGG - chr1.1:58920173-58920192 MS.gene74868:CDS 65.0%
! GAGAGTCTGCCAGCGTCGAG+TGG + chr1.1:58920127-58920146 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 58920064 58924678 58920064 ID=MS.gene74868
chr1.1 mRNA 58920064 58924678 58920064 ID=MS.gene74868.t1;Parent=MS.gene74868
chr1.1 exon 58924418 58924678 58924418 ID=MS.gene74868.t1.exon1;Parent=MS.gene74868.t1
chr1.1 CDS 58924418 58924678 58924418 ID=cds.MS.gene74868.t1;Parent=MS.gene74868.t1
chr1.1 exon 58924189 58924307 58924189 ID=MS.gene74868.t1.exon2;Parent=MS.gene74868.t1
chr1.1 CDS 58924189 58924307 58924189 ID=cds.MS.gene74868.t1;Parent=MS.gene74868.t1
chr1.1 exon 58920064 58920508 58920064 ID=MS.gene74868.t1.exon3;Parent=MS.gene74868.t1
chr1.1 CDS 58920064 58920508 58920064 ID=cds.MS.gene74868.t1;Parent=MS.gene74868.t1
Gene Sequence

>MS.gene74868

ATGACAGCCTTTGAAGAATTACCGGAAGGTTGCATCGCGGCAATTCTCTCTAGTACAACTCCACTCGACGCTGGCAGACTCTCCCTCGTTTCTAAGAATTTTCTTTCTGCGGCCGATTCCGACGCTGTTTGGAACCGCTTTCTCCCTTCTGATATCTCATCTATCATCTCACACTTTCCTTCCCTAGCCAACATTCCTGCCAAAAAGGATCTCTATCTTGCTCTATCTGATCGCCCTATCATCATCGACAATGGTAAAAAGGTATTTTTCTTCCCAACTACTGATTTCTCGAATATTATTGAATTGGTCAGTTTTGGAGTTTCAAATGTTTAGTTAAGAATGCTAATTAGCGTTGGATTTATGAAATGTAGAGTTTTCAATTGGAGAGAAAGAGTGGAAAGAAGTGTTATATGCTTTCTGCTAGATCTCTTGCCATTACTTGGGGTGACACTGACCAATATTGGAACTGGACTGCTATGCCTGAATCCAGGTTTGCTCTTAAATTTTCTACTTGCTTAACTTAACTTAATAAATTTTCTAGTTAGTATCAGAGTCTATTCATTCAGACCACAACCAAAATTTTCACGCTCATGAGTGGTGTATTGGGAAAAATGCATGTCTCATGTTGAAAAGAAATAAGGCATGAAAATAGTTTACAAAAGAGAGGAACCCCTCACTTACTAAGCTTGTTGTTTAAGAATGTGCTAGATCCAAGCTCATATCCAGTGGGCATGATTTAAAAAAAAAAAAAAAAAAACTCAAGTCAGAAAGTCCCGAATTTAAAACCCTAGCCATCAAGTCATCCTGCTGACTATAACCCCACACATAAAGTTGAACCAGCCGATCTGTCCATCGCCAGAACTAGAGGTCTGTTGCGCGGTCATGAACCTAAGCAATTTTAGGCTCTCTTGTTTTTTCATGTGCCGAAATAAAGCCATTAATGGGCTTGAATGATTCTATTTCCTATGTTAGTGGTCAGTTTGTGTTGATTGATCCTATTGTACTGAGAATCAACTGGCTTTTCCTGCCATATTTTCAACTTTTGGTGGTGAAAATTCCAATCAGCAGTTAGTAAAGAAGGTTTGCCTAGGTTAGCACTCAATGTGTTGCTCTACTTCTAGACCATGCCATAGATAAGTGTTTCAAAATCCATAGCCACTAGGGATGGCAAAAAAATCCGCATCCGTGGATATCCACGGATAAAATCCGTCACGGGTACAGAGCGGATATGTTAATAGATATCCATGGATAAAATAAACGGATTTTTTAACTACCCGCTAATTAATGGATACGGATGCGGATTTAATGGTATCCACACCCGCGGATATTCATACCCGCTATTAAACCGAGTAAATTACATAAATAACCTCAATATCATTCAACTTCCTAAGAAAGCACCCTAGGTATTGTGAGTGTTATCAGTTATTACCCTCCTTTAAAAGGAAGTGAAAGTGGTTGGGATTGTTGATGCTTTGTTTTTGTTGAATATGATGAGCTTTACTTATGTTTTTGTTAAATCAAAGAACTTTATTTTTATTAAATGTAAGGGACTTTATTTATGATTTTGTTGAGTCAATGATCTTTGTTGTTATTGTAATGTATGAATACTATGTTTTGCTAAAAAGAAAAGAAAATGCATGTGAAGAACCTTTGTTTCTAAATTTTAGCTAATAAAAAGTAAACAAATTTTTTATTTTATTTTTATAAATGTTATCCATGGATATCTGTATAAACCCGCGGATACCTCAAAATCCACGGATTACCCGCTAAACGGATATGGATAGGGTACGGATTTCATATTTATCTAACGGAGCGGACACGGATATCACACTATCCGCATCCGTGGATATCCATTTACATCCCTAATAGCCACCCCTTCTGGTAAAAATACCCAAATCTCAAGCACATGAAGTCAGGCCAACGAAGTTTCTGATGCCACCATGGCTTGGATTATGGAGTTTATTCCTTCACTTCGCTTCAGCTAAGTTTCTGAAGCAAACATTCATCTATTCACTCATTTACCTCTTGCATCGAAAATACAACTTGGAATGGAGCACCTAGATCTTTTATCATGTAGTCCTTCATCTGTACAGTTTCTTTTCTTGATCCAAATCATTAGATTTTGGATTCAACGACAGCCAATCCTATTTTTTTTCAATGCTTAATTAAATTTGCATGACTTTTTTCTTTACTTTTCAGTTCCTTCAATCAAGTTCAAACTGATTTCTTCGAATTTCATTGCTATAAACTTATACCTATTCCATTATTTTTACTATGGGGTCTTTAGATTAGGAAGAGTGTTGTTCTTGGTGACCGGGTATACCAGGCTCGTAACCCTTAAGTTGTACTGAATTCCCCATTTTGTGATGATGTTTCTGTAATTAAGTTTCAAATAAAGTATCATAATGCACACAGGAATCTAGGGTTGGGCATTTGTCTTAAAAACGTTATTGATTCTTAAAAAAAAAAGTAACAGTATAACACCAACTTTCTTTTTTCTGATTTTAATTGTGGTCCTAATTATATATGTCCATTAGCCAAAGTGCCAAACAACATAGAATTTCATTTTATTTAAATACTAAGTTACTTGCTCTTTCTTTTAATAATATATCATAAATTGTGATGTTTGGGGCCCATACTGTGTGCCCAGTCCCACATATGCTGGTCAGTTGTATGTCTTCTCATTCTGACTTTGAGATGTTGCAATGCCAATATCTCTTGAATCGGCTTTAACTGATTTCCTTCCAACTAAGGGAATTTCACATCAATTTTCAAGCGTAAGACTACAATACAAGCATGTTGAGAATAGACACCAACATCTCTTGCATTTGACAGATCTTTGCTGTTTCAGTTTTTGCACTTAGGTACCAGTTTTGTTTTTCTACTCTCCTTATCAACACAGTTCCATCTCCCATTTAAGAACTGCCAAATTAGCTTCTGTATCCTAAGTCTCCCAACCCATCTATAACTATGAGTTTTTTAGCTTCTTATGTTGTGCCTATGCTTTTTCATAATTGTTAGATACGTTCTCGGAAAGCGACATTCCTGCATTATTATTGGCTAGCAAAAAAGGGTAGAAAGGCTGTGTATTGAATGCTATAAGTGAAAGACCATTTTAAATTTCAAGGGATGTAAAGTTGAATGAAACTATTTTCCATTTTCAGCTTCTCTCACTACTTTCACTTTCTCCTCATATTTCCTTCTAAGTGAATACTTGTTAAATTATTCAATCCTAAGGTTTACTGTACACCCGAATCTGAACCTCAATAACAGTGTTGGTGATCTACTGTCTCATAATTCTCTATATAGATAGTTAATAAGTAGAATACTATTATACTTGATAAATTCTAGACCTGACAATAGTTATGTTGCCCAAAAAATAAGTCTGTATGTATATGAGCATTGCAGTCCCCTTTTTGATATTTGAAAGGCACACCTGACTAGGTTCTCATATCTTCTGAAACGTCTTTCTTACATTAACCACTTGCAAAGCCTATGCAGAAGCTGAATAGGCCACATGTGTTGGCACACTTGCAGATCCGCTACATGTTACCATTTTTTCTTTGTGATTTTACTTTGTCATGGAAACCAATAAATCTACTGTCAGTGGATCATTTGTGAAGACTGAGTATACCTTTGCAGCCGTGCCAAGTGATTAACTTGGCTATCATATCTTGTTTATAATTTTGTCTTTTCTCCAACTTCAACCCTTATATTGGGACAACCAAGTAGTTGTCTATATTGCTTCTATCCACAATTATCATGAGGCAATGAGGAATGTAGAAAACTGGATTTCCTTTTTGTGAGGGAGAAGATGAATGTTGCAGTTCTCAAGCTGGTTTTCGGTCGTTGTAGTCCAGCTGATGGCTTACTTATCTACAAATGCTCTTTCTACAACTCACTTTCGTGAAATTTTGTCCAATATGGAAATCCACTCTTTCATACTCCTGAAAGTCCCAATAGTTTTAGATATTTTAGACAAGATCCACCACTGGATAGTGGGCAGGGTATTATTTACAACAACCAATATAACTTAGAAGTTTATCATAATCAGTTACAGCTTTAAACAATTTAGTCATACTTGGTTTACAGTTTCCAAATGTTAGTTGATGAGCCTACATTGTTCCTGTATTCTTATCTTTGCAACTTTTGTGCACATATTTTGGACAGGTTTCCTGAAGTTGCTGAACTTCTTCATGTGTGTTGGCTTGAAATTCGTGGGAAGATAAACACCCTTGCCTTGTCCCCAAATACTCTGTACGTAACTTATCTTGTGTTCAAGATGATCAATGCCTATGGATTTGAGTACTATCCTGTGGAGTTATCAGTTGATATCAAAGGTGGCCAAAGTAGCACTAAAATTGTCTGTTTAGCGGATCCAAACGCGAGACGTAGGCACCGTAGCAGAATTATAGTTACGGAGCCCAACAGAGTATTAAGATTGCAACGTCCTAATGTTAGAAGCGATGGCTGGTTGGAGATTGAGATGGGAGAGTTCTTCTCAGGCCTAGAAGATGAAGAAGTCCAAATGAGTGTTATTGATATAAAGGGTGGTCATTGGAAGAGAGGTTTCTTTGTTGAAGGAATAGAAGTTAGGCCTAAGGAAGACCATTAA
Protein sequence

>MS.gene74868.t1

MTAFEELPEGCIAAILSSTTPLDAGRLSLVSKNFLSAADSDAVWNRFLPSDISSIISHFPSLANIPAKKDLYLALSDRPIIIDNGKKSFQLERKSGKKCYMLSARSLAITWGDTDQYWNWTAMPESRFPEVAELLHVCWLEIRGKINTLALSPNTLYVTYLVFKMINAYGFEYYPVELSVDIKGGQSSTKIVCLADPNARRRHRSRIIVTEPNRVLRLQRPNVRSDGWLEIEMGEFFSGLEDEEVQMSVIDIKGGHWKRGFFVEGIEVRPKEDH