AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43942

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43942.t1 MTR_1g079850 91.549 284 24 0 1 284 1 284 0.0 529
MS.gene43942.t1 MTR_1g100597 70.070 284 76 5 1 284 1 275 2.19e-130 371
MS.gene43942.t1 MTR_1g079180 67.972 281 74 5 1 281 1 265 1.43e-128 366
MS.gene43942.t1 MTR_1g079370 64.057 281 85 3 1 281 1 265 3.80e-124 355
MS.gene43942.t1 MTR_1g079200 66.078 283 75 3 1 281 1 264 7.36e-123 352
MS.gene43942.t1 MTR_1g079230 65.263 285 89 4 1 284 1 276 1.67e-120 346
MS.gene43942.t1 MTR_1g079260 62.807 285 95 4 1 284 1 275 1.27e-118 341
MS.gene43942.t1 MTR_1g079460 61.972 284 93 3 1 284 1 269 1.80e-115 333
MS.gene43942.t1 MTR_1g079380 61.922 281 91 2 1 281 1 265 5.98e-115 333
MS.gene43942.t1 MTR_1g079250 65.625 288 88 6 1 284 1 281 3.16e-114 331
MS.gene43942.t1 MTR_1g100613 68.675 249 65 4 20 264 5 244 3.53e-110 318
MS.gene43942.t1 MTR_3g006850 58.766 308 94 6 4 284 17 318 2.10e-105 309
MS.gene43942.t1 MTR_1g026510 58.362 293 106 6 1 284 1 286 8.17e-105 307
MS.gene43942.t1 MTR_3g452600 57.651 281 99 3 4 284 10 270 5.58e-101 296
MS.gene43942.t1 MTR_2g079100 57.246 276 92 3 5 278 10 261 3.19e-93 276
MS.gene43942.t1 MTR_3g450990 53.535 297 102 5 4 284 10 286 3.10e-90 270
MS.gene43942.t1 MTR_1g079410 50.526 285 119 5 3 282 7 274 1.50e-83 252
MS.gene43942.t1 MTR_1g079350 52.218 293 110 8 1 281 1 275 1.97e-83 252
MS.gene43942.t1 MTR_1g079340 50.993 302 111 9 1 281 40 325 4.30e-81 248
MS.gene43942.t1 MTR_1g079140 46.801 297 136 5 4 281 13 306 2.76e-78 240
MS.gene43942.t1 MTR_7g096300 54.135 266 93 7 1 261 1 242 9.32e-75 243
MS.gene43942.t1 MTR_1g079400 43.056 288 132 6 5 281 13 279 1.63e-64 204
MS.gene43942.t1 MTR_1g078470 56.757 185 63 3 97 281 17 184 3.07e-63 197
MS.gene43942.t1 MTR_7g112550 42.553 282 147 10 7 281 10 283 4.53e-60 192
MS.gene43942.t1 MTR_1g083580 38.889 288 156 9 2 281 6 281 6.20e-59 189
MS.gene43942.t1 MTR_1g079240 53.927 191 65 3 91 281 12 179 2.32e-55 177
MS.gene43942.t1 MTR_2g042540 73.832 107 26 1 1 107 1 105 1.16e-48 158
MS.gene43942.t1 MTR_7g112560 36.918 279 153 7 4 281 1 257 4.53e-47 158
MS.gene43942.t1 MTR_1g076870 59.259 135 49 2 132 261 2 135 3.82e-46 152
MS.gene43942.t1 MTR_1g079350 52.663 169 69 4 1 163 1 164 2.54e-44 150
MS.gene43942.t1 MTR_4g023570 34.173 278 142 4 4 281 1 237 1.03e-41 144
MS.gene43942.t1 MTR_1g079130 44.444 189 93 4 105 281 1 189 1.65e-38 134
MS.gene43942.t1 MTR_1g079210 56.250 128 48 2 133 256 7 130 8.02e-38 130
MS.gene43942.t1 MTR_3g058640 53.509 114 39 1 132 245 7 106 3.23e-30 110
MS.gene43942.t1 MTR_1g078460 67.033 91 26 2 1 91 64 150 4.98e-30 111
MS.gene43942.t1 MTR_7g096310 49.635 137 63 3 54 186 25 159 6.37e-28 105
MS.gene43942.t1 MTR_7g103380 23.793 290 183 6 6 282 21 285 1.74e-22 94.7
MS.gene43942.t1 MTR_0113s0040 31.973 147 97 2 4 150 22 165 1.74e-18 83.6
MS.gene43942.t1 MTR_0002s0020 29.630 162 110 2 6 165 24 183 6.87e-18 82.0
MS.gene43942.t1 MTR_4g083970 26.141 241 137 7 50 281 82 290 1.72e-17 80.9
MS.gene43942.t1 MTR_5g010800 31.126 151 97 4 3 151 16 161 2.44e-17 80.5
MS.gene43942.t1 MTR_1g101390 25.887 282 176 11 6 282 30 283 1.61e-16 78.2
MS.gene43942.t1 MTR_1g079220 49.367 79 26 1 169 247 1 65 1.25e-15 70.5
MS.gene43942.t1 MTR_4g102770 31.034 145 98 2 6 150 21 163 2.29e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43942.t1 AT1G80110 43.636 275 131 7 7 280 4 255 6.05e-66 207
MS.gene43942.t1 AT2G02360 38.214 280 145 5 4 280 14 268 1.28e-61 196
MS.gene43942.t1 AT1G09155 41.197 284 152 7 7 281 3 280 7.35e-56 182
MS.gene43942.t1 AT2G02250 37.857 280 148 7 4 280 47 303 1.77e-54 179
MS.gene43942.t1 AT2G02240 37.589 282 153 5 4 284 61 320 2.62e-53 176
MS.gene43942.t1 AT2G02230 34.713 314 163 8 4 284 32 336 5.49e-53 176
MS.gene43942.t1 AT1G56240 39.146 281 160 5 7 280 4 280 7.06e-53 174
MS.gene43942.t1 AT1G56250 39.007 282 161 5 7 281 4 281 1.78e-49 165
MS.gene43942.t1 AT2G02340 34.375 288 162 7 1 280 33 301 8.38e-48 162
MS.gene43942.t1 AT2G02310 35.106 282 159 8 4 282 45 305 1.53e-44 153
MS.gene43942.t1 AT2G02350 32.979 282 163 7 3 280 23 282 3.04e-42 147
MS.gene43942.t1 AT2G02320 34.737 285 148 10 6 280 42 298 1.37e-39 140
MS.gene43942.t1 AT2G02300 32.414 290 146 9 3 282 33 282 8.44e-39 137
MS.gene43942.t1 AT5G24560 45.890 146 72 2 3 148 2 140 8.90e-37 130
MS.gene43942.t1 AT3G53000 26.460 291 175 7 6 283 23 287 1.42e-24 100
MS.gene43942.t1 AT2G02350 30.556 180 106 5 105 280 1 165 3.09e-18 80.5
MS.gene43942.t1 AT1G12710 25.397 252 166 5 6 241 30 275 6.42e-17 79.3
MS.gene43942.t1 AT1G63090 28.986 207 124 6 6 196 28 227 3.66e-16 77.4
MS.gene43942.t1 AT3G61060 28.767 146 97 3 6 149 27 167 6.23e-16 76.6
MS.gene43942.t1 AT5G52120 31.788 151 98 2 4 150 21 170 9.23e-16 76.3
MS.gene43942.t1 AT3G61060 27.397 146 100 2 6 149 27 168 1.49e-15 75.5
MS.gene43942.t1 AT1G12710 29.747 158 97 4 6 153 30 183 4.02e-12 65.9

Find 84 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATATGGCTCCGTCTTTC+TGG 0.113222 1.4:-64829522 MS.gene43942:CDS
TTCAAGATGATTGCGGTATT+TGG 0.206757 1.4:-64829648 MS.gene43942:CDS
TAAGCCGCATACTGAGTAAT+TGG 0.244954 1.4:+64829678 None:intergenic
CCGCTGATTCCGACGCCGTC+TGG 0.306305 1.4:-64830336 MS.gene43942:CDS
AAGCACTAAAATTGTGTGTT+TGG 0.322198 1.4:-64829574 MS.gene43942:CDS
TGAAGAAGCTTAGCAACTTT+GGG 0.332813 1.4:+64829750 None:intergenic
TGAGCATTGTCGATGATGAT+AGG 0.336712 1.4:+64830199 None:intergenic
TGCCAACGCTCCTACCAAAA+AGG 0.348280 1.4:-64830248 MS.gene43942:CDS
TAGATCTCTCGCCATTGCTT+GGG 0.355736 1.4:-64829965 MS.gene43942:CDS
GTGCGTTGGCTTGAAATTCA+TGG 0.359165 1.4:-64829726 MS.gene43942:CDS
CTTAATCAATTGTCTTCCTT+AGG 0.364137 1.4:+64829309 None:intergenic
CTAGATCTCTCGCCATTGCT+TGG 0.374556 1.4:-64829966 MS.gene43942:CDS
AAGGGAAATTTCTTTCTTGA+AGG 0.377188 1.4:-64829345 MS.gene43942:CDS
ATAGGAACAAAGAACTAATA+TGG 0.377474 1.4:-64829536 MS.gene43942:CDS
GTGAAGAAGCTTAGCAACTT+TGG 0.379608 1.4:+64829749 None:intergenic
GGATTGCTGTGCCTGATTCC+AGG 0.382495 1.4:-64829918 MS.gene43942:intron
TGATGATAGGGCGCTCAGAT+AGG 0.392390 1.4:+64830212 None:intergenic
AGATGATGAAGTCGATGAAT+TGG 0.404952 1.4:+64830290 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.416329 1.4:-64830025 MS.gene43942:intron
GATGATGAAGTCGATGAATT+GGG 0.420088 1.4:+64830291 None:intergenic
AAGCCGCATACTGAGTAATT+GGG 0.424150 1.4:+64829679 None:intergenic
GCATAACCAAACCTGGAATC+AGG 0.428282 1.4:+64829907 None:intergenic
CGGAGTGGTACGAGATAGTA+TGG 0.433671 1.4:+64830405 None:intergenic
TAATATGGCTCCGTCTTTCT+GGG 0.439907 1.4:-64829521 MS.gene43942:CDS
TTGTTCCTATGTACCAAGCT+TGG 0.444587 1.4:+64829549 None:intergenic
CATCATCGACAATGCTCAAA+AGG 0.444946 1.4:-64830194 MS.gene43942:intron
CATCCTGTGGACTTGTTAGT+TGG 0.456770 1.4:-64829615 MS.gene43942:CDS
TGGATCCAAGCTTGGTACAT+AGG 0.466567 1.4:-64829554 MS.gene43942:CDS
CTAAGCTTCTTCACGTGCGT+TGG 0.466916 1.4:-64829740 MS.gene43942:CDS
ATTAGTGTTATCGAGATAGA+TGG 0.468630 1.4:-64829378 MS.gene43942:CDS
GGGAACGTTTGAAGAATTAC+CGG 0.469130 1.4:-64830443 MS.gene43942:CDS
ATGTCGCACAACAAAGTAGT+AGG 0.481595 1.4:-64829492 MS.gene43942:CDS
ATGGCGGCAATGCACCCTTC+CGG 0.486147 1.4:+64830424 None:intergenic
CCACTCCGGCTGACGTCGGC+AGG 0.500315 1.4:-64830390 MS.gene43942:CDS
ACGATGATCGATATTGCAAA+TGG 0.500644 1.4:-64829939 MS.gene43942:CDS
GAGCATTGTCGATGATGATA+GGG 0.502802 1.4:+64830200 None:intergenic
GAGAACCTGCCGACGTCAGC+CGG 0.503179 1.4:+64830385 None:intergenic
AGCGGCAGAACGGAATGTCT+TGG 0.509093 1.4:+64830354 None:intergenic
TTCTTTAATTTATGCCTCGA+AGG 0.519154 1.4:-64829414 MS.gene43942:CDS
GATGATAGGGCGCTCAGATA+GGG 0.525529 1.4:+64830213 None:intergenic
CGTCCTTGTGTGAGACGTGA+TGG 0.528932 1.4:-64829462 MS.gene43942:CDS
AGGAATAGAAGTTAGACCTA+AGG 0.534122 1.4:-64829325 MS.gene43942:CDS
TCAAGAAAGAAATTTCCCTT+CGG 0.536909 1.4:+64829348 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.4:-64829441 MS.gene43942:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.4:-64829442 MS.gene43942:CDS
AGTAATTGGGGACAAGGCAC+AGG 0.544142 1.4:+64829692 None:intergenic
GTAGGAGCGTTGGCAATGGA+AGG 0.561351 1.4:+64830256 None:intergenic
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.4:-64830012 MS.gene43942:CDS
AGATCTCTCGCCATTGCTTG+GGG 0.568943 1.4:-64829964 MS.gene43942:CDS
TGTGGACTTCTACACCTTCG+AGG 0.569696 1.4:+64829400 None:intergenic
TCTTGTGTTCAAGATGATTG+CGG 0.577737 1.4:-64829655 MS.gene43942:CDS
CCAGACGGCGTCGGAATCAG+CGG 0.582407 1.4:+64830336 None:intergenic
TGTGTGTTTGGATCCAAGCT+TGG 0.582832 1.4:-64829562 MS.gene43942:CDS
GTCCCCAATTACTCAGTATG+CGG 0.584074 1.4:-64829682 MS.gene43942:CDS
CTATCTCGATAACACTAATG+TGG 0.592924 1.4:+64829382 None:intergenic
GACTTGTTAGTTGGTGTCGA+AGG 0.594500 1.4:-64829606 MS.gene43942:CDS
ATCATCGTCACCCCAAGCAA+TGG 0.595008 1.4:+64829954 None:intergenic
CACCCATCACGTCTCACACA+AGG 0.595122 1.4:+64829459 None:intergenic
CCTGCCGACGTCAGCCGGAG+TGG 0.595334 1.4:+64830390 None:intergenic
TGTGAGACGTGATGGGTGGT+TGG 0.601299 1.4:-64829454 MS.gene43942:CDS
GAAGAAGCTTAGCAACTTTG+GGG 0.601922 1.4:+64829751 None:intergenic
TTTGGTAGGAGCGTTGGCAA+TGG 0.610470 1.4:+64830252 None:intergenic
ACATACTAGTCCCAGAAAGA+CGG 0.611319 1.4:+64829511 None:intergenic
GATAGATGGTGATTTGCCGA+AGG 0.613865 1.4:-64829364 MS.gene43942:CDS
ATAGATGGTGATTTGCCGAA+GGG 0.616572 1.4:-64829363 MS.gene43942:CDS
CGTCGGAATCAGCGGCAGAA+CGG 0.619760 1.4:+64830344 None:intergenic
ACACCAACTAACAAGTCCAC+AGG 0.620063 1.4:+64829612 None:intergenic
CGTTTGAAGAATTACCGGAA+GGG 0.623415 1.4:-64830438 MS.gene43942:CDS
ATGATGAAGTCGATGAATTG+GGG 0.626092 1.4:+64830292 None:intergenic
GTCCTTGTGTGAGACGTGAT+GGG 0.628973 1.4:-64829461 MS.gene43942:CDS
ACGTTTGAAGAATTACCGGA+AGG 0.633270 1.4:-64830439 MS.gene43942:CDS
AGCCGCATACTGAGTAATTG+GGG 0.640308 1.4:+64829680 None:intergenic
TGGATTTGAGAATCATCCTG+TGG 0.644402 1.4:-64829628 MS.gene43942:CDS
GGAGCGTTGGCAATGGAAGG+AGG 0.646074 1.4:+64830259 None:intergenic
AAAATGATTCCAGACGGCGT+CGG 0.652221 1.4:+64830327 None:intergenic
ATACTGAGTAATTGGGGACA+AGG 0.658194 1.4:+64829686 None:intergenic
TGACGTCGGCAGGTTCTCCG+TGG 0.673421 1.4:-64830380 MS.gene43942:CDS
ACGGAGAAAATGATTCCAGA+CGG 0.677220 1.4:+64830321 None:intergenic
TGATGAAGTCGATGAATTGG+GGG 0.685586 1.4:+64830293 None:intergenic
CTTGTGTGAGACGTGATGGG+TGG 0.689727 1.4:-64829458 MS.gene43942:CDS
ACGGAATGTCTTGGAAACCA+CGG 0.690249 1.4:+64830363 None:intergenic
CGTACCACTCCGGCTGACGT+CGG 0.713269 1.4:-64830394 MS.gene43942:CDS
CATACTATCTCGTACCACTC+CGG 0.714669 1.4:-64830404 MS.gene43942:CDS
AGTGGTACGAGATAGTATGG+CGG 0.804735 1.4:+64830408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGAGACTAAAATT+TGG + chr1.4:64829966-64829985 None:intergenic 15.0%
!!! TAGAAACTGAATTTAATTTT+TGG - chr1.4:64829670-64829689 MS.gene43942:CDS 15.0%
! ATAGGAACAAAGAACTAATA+TGG - chr1.4:64830223-64830242 MS.gene43942:CDS 25.0%
! TATAAATACTCCATTTGTGT+TGG - chr1.4:64829978-64829997 MS.gene43942:CDS 25.0%
! TTGTCAATTATACGAGAAAT+TGG + chr1.4:64829612-64829631 None:intergenic 25.0%
AAGCACTAAAATTGTGTGTT+TGG - chr1.4:64830185-64830204 MS.gene43942:intron 30.0%
AAGGGAAATTTCTTTCTTGA+AGG - chr1.4:64830414-64830433 MS.gene43942:CDS 30.0%
AATTTGGAAGTTGTAAACCA+AGG + chr1.4:64829950-64829969 None:intergenic 30.0%
ATAGTAAGAAAACACAGAGA+GGG - chr1.4:64829641-64829660 MS.gene43942:CDS 30.0%
ATTAGTGTTATCGAGATAGA+TGG - chr1.4:64830381-64830400 MS.gene43942:CDS 30.0%
ATTTGGAAGTTGTAAACCAA+GGG + chr1.4:64829949-64829968 None:intergenic 30.0%
TATAGTAAGAAAACACAGAG+AGG - chr1.4:64829640-64829659 MS.gene43942:CDS 30.0%
TCAAGAAAGAAATTTCCCTT+CGG + chr1.4:64830414-64830433 None:intergenic 30.0%
TCAATTATACGAGAAATTGG+AGG + chr1.4:64829609-64829628 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.4:64829747-64829766 MS.gene43942:CDS 30.0%
! TGAAATGATTTTGTTACCCT+TGG - chr1.4:64829930-64829949 MS.gene43942:CDS 30.0%
! TTCTTTAATTTATGCCTCGA+AGG - chr1.4:64830345-64830364 MS.gene43942:CDS 30.0%
!! ACACAATTTTAGTGCTTCTA+TGG + chr1.4:64830182-64830201 None:intergenic 30.0%
ACGATGATCGATATTGCAAA+TGG - chr1.4:64829820-64829839 MS.gene43942:intron 35.0%
AGATGATGAAGTCGATGAAT+TGG + chr1.4:64829472-64829491 None:intergenic 35.0%
AGGAATAGAAGTTAGACCTA+AGG - chr1.4:64830434-64830453 MS.gene43942:CDS 35.0%
ATACTCCATTTGTGTTGGAT+AGG - chr1.4:64829983-64830002 MS.gene43942:CDS 35.0%
ATGATGAAGTCGATGAATTG+GGG + chr1.4:64829470-64829489 None:intergenic 35.0%
ATTATACGAGAAATTGGAGG+AGG + chr1.4:64829606-64829625 None:intergenic 35.0%
CTATCTCGATAACACTAATG+TGG + chr1.4:64830380-64830399 None:intergenic 35.0%
GATGATGAAGTCGATGAATT+GGG + chr1.4:64829471-64829490 None:intergenic 35.0%
TCTTGTGTTCAAGATGATTG+CGG - chr1.4:64830104-64830123 MS.gene43942:intron 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.4:64829734-64829753 MS.gene43942:CDS 35.0%
TGAAGAAGCTTAGCAACTTT+GGG + chr1.4:64830012-64830031 None:intergenic 35.0%
TTCAAGATGATTGCGGTATT+TGG - chr1.4:64830111-64830130 MS.gene43942:intron 35.0%
AAGCCGCATACTGAGTAATT+GGG + chr1.4:64830083-64830102 None:intergenic 40.0%
ACATACTAGTCCCAGAAAGA+CGG + chr1.4:64830251-64830270 None:intergenic 40.0%
ACGGAGAAAATGATTCCAGA+CGG + chr1.4:64829441-64829460 None:intergenic 40.0%
ACGTTTGAAGAATTACCGGA+AGG - chr1.4:64829320-64829339 MS.gene43942:CDS 40.0%
ATACTGAGTAATTGGGGACA+AGG + chr1.4:64830076-64830095 None:intergenic 40.0%
ATGTCGCACAACAAAGTAGT+AGG - chr1.4:64830267-64830286 MS.gene43942:CDS 40.0%
CATCATCGACAATGCTCAAA+AGG - chr1.4:64829565-64829584 MS.gene43942:CDS 40.0%
CGTTTGAAGAATTACCGGAA+GGG - chr1.4:64829321-64829340 MS.gene43942:CDS 40.0%
GAAGAAGCTTAGCAACTTTG+GGG + chr1.4:64830011-64830030 None:intergenic 40.0%
GGGAACGTTTGAAGAATTAC+CGG - chr1.4:64829316-64829335 MS.gene43942:CDS 40.0%
GTGAAGAAGCTTAGCAACTT+TGG + chr1.4:64830013-64830032 None:intergenic 40.0%
GTTTCAAGCATAACCAAACC+TGG + chr1.4:64829862-64829881 None:intergenic 40.0%
TAAGCCGCATACTGAGTAAT+TGG + chr1.4:64830084-64830103 None:intergenic 40.0%
TAATATGGCTCCGTCTTTCT+GGG - chr1.4:64830238-64830257 MS.gene43942:CDS 40.0%
TGATGAAGTCGATGAATTGG+GGG + chr1.4:64829469-64829488 None:intergenic 40.0%
TGGATTTGAGAATCATCCTG+TGG - chr1.4:64830131-64830150 MS.gene43942:intron 40.0%
TTGTTCCTATGTACCAAGCT+TGG + chr1.4:64830213-64830232 None:intergenic 40.0%
! ATAGATGGTGATTTGCCGAA+GGG - chr1.4:64830396-64830415 MS.gene43942:CDS 40.0%
! GAGCATTGTCGATGATGATA+GGG + chr1.4:64829562-64829581 None:intergenic 40.0%
! TGAGCATTGTCGATGATGAT+AGG + chr1.4:64829563-64829582 None:intergenic 40.0%
!! AGAAAGAGAGCCTTTTTGGT+AGG + chr1.4:64829524-64829543 None:intergenic 40.0%
AAAATGATTCCAGACGGCGT+CGG + chr1.4:64829435-64829454 None:intergenic 45.0%
ACACCAACTAACAAGTCCAC+AGG + chr1.4:64830150-64830169 None:intergenic 45.0%
ACGGAATGTCTTGGAAACCA+CGG + chr1.4:64829399-64829418 None:intergenic 45.0%
AGCCGCATACTGAGTAATTG+GGG + chr1.4:64830082-64830101 None:intergenic 45.0%
AGTGGTACGAGATAGTATGG+CGG + chr1.4:64829354-64829373 None:intergenic 45.0%
CATACTATCTCGTACCACTC+CGG - chr1.4:64829355-64829374 MS.gene43942:CDS 45.0%
CTAATATGGCTCCGTCTTTC+TGG - chr1.4:64830237-64830256 MS.gene43942:CDS 45.0%
GCATAACCAAACCTGGAATC+AGG + chr1.4:64829855-64829874 None:intergenic 45.0%
GGGAACCTATCCAACACAAA+TGG + chr1.4:64829991-64830010 None:intergenic 45.0%
GTCCCCAATTACTCAGTATG+CGG - chr1.4:64830077-64830096 MS.gene43942:intron 45.0%
TAGATCTCTCGCCATTGCTT+GGG - chr1.4:64829794-64829813 MS.gene43942:intron 45.0%
TGGATCCAAGCTTGGTACAT+AGG - chr1.4:64830205-64830224 MS.gene43942:CDS 45.0%
TGTGTGTTTGGATCCAAGCT+TGG - chr1.4:64830197-64830216 MS.gene43942:CDS 45.0%
! GATAGATGGTGATTTGCCGA+AGG - chr1.4:64830395-64830414 MS.gene43942:CDS 45.0%
! GGTGAGAAAGAGAGCCTTTT+TGG + chr1.4:64829528-64829547 None:intergenic 45.0%
!! CATCCTGTGGACTTGTTAGT+TGG - chr1.4:64830144-64830163 MS.gene43942:intron 45.0%
!! GACTTGTTAGTTGGTGTCGA+AGG - chr1.4:64830153-64830172 MS.gene43942:intron 45.0%
!! GTGCGTTGGCTTGAAATTCA+TGG - chr1.4:64830033-64830052 MS.gene43942:intron 45.0%
AGATCTCTCGCCATTGCTTG+GGG - chr1.4:64829795-64829814 MS.gene43942:intron 50.0%
AGTAATTGGGGACAAGGCAC+AGG + chr1.4:64830070-64830089 None:intergenic 50.0%
ATCATCGTCACCCCAAGCAA+TGG + chr1.4:64829808-64829827 None:intergenic 50.0%
CGATGAATTGGGGGTCAGAA+CGG + chr1.4:64829460-64829479 None:intergenic 50.0%
CGGAGTGGTACGAGATAGTA+TGG + chr1.4:64829357-64829376 None:intergenic 50.0%
CTAAGCTTCTTCACGTGCGT+TGG - chr1.4:64830019-64830038 MS.gene43942:intron 50.0%
CTAGATCTCTCGCCATTGCT+TGG - chr1.4:64829793-64829812 MS.gene43942:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.4:64830318-64830337 MS.gene43942:CDS 50.0%
GTCCTTGTGTGAGACGTGAT+GGG - chr1.4:64830298-64830317 MS.gene43942:CDS 50.0%
TGCCAACGCTCCTACCAAAA+AGG - chr1.4:64829511-64829530 MS.gene43942:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.4:64830317-64830336 MS.gene43942:CDS 50.0%
TGTGGACTTCTACACCTTCG+AGG + chr1.4:64830362-64830381 None:intergenic 50.0%
! GATGATAGGGCGCTCAGATA+GGG + chr1.4:64829549-64829568 None:intergenic 50.0%
! TGATGATAGGGCGCTCAGAT+AGG + chr1.4:64829550-64829569 None:intergenic 50.0%
!! AGCCTTTTTGGTAGGAGCGT+TGG + chr1.4:64829516-64829535 None:intergenic 50.0%
!! TTTGGTAGGAGCGTTGGCAA+TGG + chr1.4:64829510-64829529 None:intergenic 50.0%
AGCGGCAGAACGGAATGTCT+TGG + chr1.4:64829408-64829427 None:intergenic 55.0%
CACCCATCACGTCTCACACA+AGG + chr1.4:64830303-64830322 None:intergenic 55.0%
CGTCCTTGTGTGAGACGTGA+TGG - chr1.4:64830297-64830316 MS.gene43942:CDS 55.0%
GCTGTGCCTGATTCCAGGTT+TGG - chr1.4:64829846-64829865 MS.gene43942:intron 55.0%
GGATTGCTGTGCCTGATTCC+AGG - chr1.4:64829841-64829860 MS.gene43942:intron 55.0%
! CTTGTGTGAGACGTGATGGG+TGG - chr1.4:64830301-64830320 MS.gene43942:CDS 55.0%
!! GTAGGAGCGTTGGCAATGGA+AGG + chr1.4:64829506-64829525 None:intergenic 55.0%
!! TGTGAGACGTGATGGGTGGT+TGG - chr1.4:64830305-64830324 MS.gene43942:CDS 55.0%
ATGGCGGCAATGCACCCTTC+CGG + chr1.4:64829338-64829357 None:intergenic 60.0%
CGTCGGAATCAGCGGCAGAA+CGG + chr1.4:64829418-64829437 None:intergenic 60.0%
!! GGAGCGTTGGCAATGGAAGG+AGG + chr1.4:64829503-64829522 None:intergenic 60.0%
CGTACCACTCCGGCTGACGT+CGG - chr1.4:64829365-64829384 MS.gene43942:CDS 65.0%
GAGAACCTGCCGACGTCAGC+CGG + chr1.4:64829377-64829396 None:intergenic 65.0%
TGACGTCGGCAGGTTCTCCG+TGG - chr1.4:64829379-64829398 MS.gene43942:CDS 65.0%
! CCAGACGGCGTCGGAATCAG+CGG + chr1.4:64829426-64829445 None:intergenic 65.0%
!! CCGCTGATTCCGACGCCGTC+TGG - chr1.4:64829423-64829442 MS.gene43942:CDS 70.0%
CCACTCCGGCTGACGTCGGC+AGG - chr1.4:64829369-64829388 MS.gene43942:CDS 75.0%
CCTGCCGACGTCAGCCGGAG+TGG + chr1.4:64829372-64829391 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64829314 64830467 64829314 ID=MS.gene43942
chr1.4 mRNA 64829314 64830467 64829314 ID=MS.gene43942.t1;Parent=MS.gene43942
chr1.4 exon 64830195 64830467 64830195 ID=MS.gene43942.t1.exon1;Parent=MS.gene43942.t1
chr1.4 CDS 64830195 64830467 64830195 ID=cds.MS.gene43942.t1;Parent=MS.gene43942.t1
chr1.4 exon 64829919 64830037 64829919 ID=MS.gene43942.t1.exon2;Parent=MS.gene43942.t1
chr1.4 CDS 64829919 64830037 64829919 ID=cds.MS.gene43942.t1;Parent=MS.gene43942.t1
chr1.4 exon 64829314 64829776 64829314 ID=MS.gene43942.t1.exon3;Parent=MS.gene43942.t1
chr1.4 CDS 64829314 64829776 64829314 ID=cds.MS.gene43942.t1;Parent=MS.gene43942.t1
Gene Sequence

>MS.gene43942

ATGGGAACGTTTGAAGAATTACCGGAAGGGTGCATTGCCGCCATACTATCTCGTACCACTCCGGCTGACGTCGGCAGGTTCTCCGTGGTTTCCAAGACATTCCGTTCTGCCGCTGATTCCGACGCCGTCTGGAATCATTTTCTCCGTTCTGACCCCCAATTCATCGACTTCATCATCTCACACTCTCCTCCTTCCATTGCCAACGCTCCTACCAAAAAGGCTCTCTTTCTCACCCTATCTGAGCGCCCTATCATCATCGACAATGCTCAAAAGGTATTCTTCTTTATAACCTCCTCCAATTTCTCGTATAATTGACAATTTGACTGTATAGTAAGAAAACACAGAGAGGGAGAAAATAGAAACTGAATTTAATTTTTGGATTTTGAAATGAAAATGCTAATAAATAAGTTATGTATATGTTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTATATGCTTGCTGCTAGATCTCTCGCCATTGCTTGGGGTGACGATGATCGATATTGCAAATGGATTGCTGTGCCTGATTCCAGGTTTGGTTATGCTTGAAACTATCAAAGTAACTTGTTAACTGAGAATCTTATCACAATCAATTACACTTGAAATGATTTTGTTACCCTTGGTTTACAACTTCCAAATTTTAGTCTCTATAAATACTCCATTTGTGTTGGATAGGTTCCCCAAAGTTGCTAAGCTTCTTCACGTGCGTTGGCTTGAAATTCATGGAAAGATAAACACCTGTGCCTTGTCCCCAATTACTCAGTATGCGGCTTATCTTGTGTTCAAGATGATTGCGGTATTTGGATTTGAGAATCATCCTGTGGACTTGTTAGTTGGTGTCGAAGGTAGCCATAGAAGCACTAAAATTGTGTGTTTGGATCCAAGCTTGGTACATAGGAACAAAGAACTAATATGGCTCCGTCTTTCTGGGACTAGTATGTCGCACAACAAAGTAGTAGGATTGCGACGTCCTTGTGTGAGACGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTTAATTTATGCCTCGAAGGTGTAGAAGTCCACATTAGTGTTATCGAGATAGATGGTGATTTGCCGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGACCTAAGGAAGACAATTGA
Protein sequence

>MS.gene43942.t1

MGTFEELPEGCIAAILSRTTPADVGRFSVVSKTFRSAADSDAVWNHFLRSDPQFIDFIISHSPPSIANAPTKKALFLTLSERPIIIDNAQKSFQLDRKSGKKCYMLAARSLAIAWGDDDRYCKWIAVPDSRFPKVAKLLHVRWLEIHGKINTCALSPITQYAAYLVFKMIAVFGFENHPVDLLVGVEGSHRSTKIVCLDPSLVHRNKELIWLRLSGTSMSHNKVVGLRRPCVRRDGWLEIEMGEFFNLCLEGVEVHISVIEIDGDLPKGNFFLEGIEVRPKEDN