AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014841.t1 MTR_3g107120 94.608 204 11 0 35 238 56 259 1.09e-136 392
MS.gene014841.t1 MTR_3g107120 95.385 65 3 0 236 300 337 401 3.08e-35 131
MS.gene014841.t1 MTR_3g107140 68.387 155 49 0 42 196 43 197 4.90e-64 200
MS.gene014841.t1 MTR_3g107160 53.266 199 89 2 46 240 55 253 2.77e-57 189
MS.gene014841.t1 MTR_3g107160 62.069 58 22 0 238 295 331 388 6.78e-14 71.6
MS.gene014841.t1 MTR_3g107100 52.880 191 84 3 52 238 63 251 1.04e-45 159
MS.gene014841.t1 MTR_4g098590 39.831 236 122 8 57 280 56 283 5.30e-35 130
MS.gene014841.t1 MTR_2g007450 42.584 209 99 7 46 233 62 270 2.66e-31 121
MS.gene014841.t1 MTR_1g053025 38.785 214 119 5 58 259 61 274 1.79e-28 113
MS.gene014841.t1 MTR_2g007400 38.725 204 110 5 48 236 60 263 2.30e-28 113
MS.gene014841.t1 MTR_2g007500 38.974 195 96 5 46 233 60 238 1.31e-25 104
MS.gene014841.t1 MTR_5g083890 35.714 210 114 5 46 234 52 261 1.33e-22 97.8
MS.gene014841.t1 MTR_1g107385 38.942 208 105 8 47 234 79 284 4.50e-22 95.9
MS.gene014841.t1 MTR_3g450920 42.767 159 73 5 45 199 58 202 3.15e-20 87.4
MS.gene014841.t1 MTR_7g075800 31.336 217 116 6 51 236 59 273 1.23e-19 89.4
MS.gene014841.t1 MTR_3g108150 35.519 183 103 4 57 234 67 239 1.32e-18 85.5
MS.gene014841.t1 MTR_2g005990 30.544 239 148 7 58 278 64 302 8.80e-16 77.4
MS.gene014841.t1 MTR_3g026920 29.818 275 128 11 45 280 64 312 2.74e-15 75.9
MS.gene014841.t1 MTR_7g075820 41.322 121 64 3 120 234 141 260 1.07e-14 74.3
MS.gene014841.t1 MTR_5g045510 33.149 181 102 6 58 232 70 237 2.28e-14 73.2
MS.gene014841.t1 MTR_2g008310 32.195 205 117 6 46 238 48 242 2.75e-14 73.2
MS.gene014841.t1 MTR_5g073420 33.511 188 105 7 55 234 64 239 4.20e-14 72.4
MS.gene014841.t1 MTR_0009s0080 34.043 188 110 6 51 232 69 248 5.84e-14 72.0
MS.gene014841.t1 MTR_3g099830 37.705 122 70 2 120 238 117 235 1.31e-13 70.9
MS.gene014841.t1 MTR_6g045333 35.976 164 95 5 71 232 138 293 2.84e-13 70.1
MS.gene014841.t1 MTR_2g008320 31.373 204 124 5 46 238 98 296 3.44e-13 69.7
MS.gene014841.t1 MTR_5g061680 36.842 152 82 6 45 188 58 203 7.83e-13 68.2
MS.gene014841.t1 MTR_3g106960 53.030 66 29 1 177 240 1 66 1.23e-12 66.6
MS.gene014841.t1 MTR_3g106960 58.491 53 22 0 237 289 145 197 7.87e-11 61.6
MS.gene014841.t1 MTR_5g007410 35.260 173 91 8 68 232 98 257 1.78e-12 67.8
MS.gene014841.t1 MTR_7g007370 36.842 133 72 4 110 239 89 212 2.03e-12 67.0
MS.gene014841.t1 MTR_6g011460 34.524 168 93 7 72 234 122 277 2.27e-12 67.4
MS.gene014841.t1 MTR_7g007340 39.344 122 68 2 120 238 107 225 2.81e-12 67.0
MS.gene014841.t1 MTR_6g022360 37.931 145 78 5 54 192 84 222 5.28e-12 66.2
MS.gene014841.t1 MTR_7g026500 33.333 171 90 7 72 232 90 246 5.67e-12 66.2
MS.gene014841.t1 MTR_3g023630 37.956 137 75 4 56 186 61 193 6.58e-12 65.9
MS.gene014841.t1 MTR_0492s0020 31.780 236 113 11 57 263 140 356 2.27e-11 64.3
MS.gene014841.t1 MTR_2g007360 39.837 123 63 5 120 234 107 226 2.38e-11 64.3
MS.gene014841.t1 MTR_0543s0010 31.780 236 113 11 57 263 140 356 3.09e-11 63.9
MS.gene014841.t1 MTR_5g058100 33.854 192 110 7 50 232 56 239 3.23e-11 63.9
MS.gene014841.t1 MTR_3g105060 25.472 318 145 11 55 290 66 373 5.98e-11 62.8
MS.gene014841.t1 MTR_5g031970 29.148 223 137 7 55 266 55 267 6.37e-11 62.8
MS.gene014841.t1 MTR_1g066830 34.146 164 98 5 71 232 83 238 6.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATATTTCAGAATTTCTT+AGG 0.305184 3.3:-87700736 MS.gene014841:intron
GTATGCAAATCTTCAAGAAT+TGG 0.312602 3.3:+87701356 None:intergenic
CTTGAGGTGAAAACTCTTGA+TGG 0.340306 3.3:+87701670 None:intergenic
TTTCACCTCAAGGTTGGATA+TGG 0.342920 3.3:-87701659 MS.gene014841:CDS
GCTTTCCCAGTGTGGTCAAA+TGG 0.343728 3.3:-87701613 MS.gene014841:CDS
ACTGCACATAGAACTAAATA+AGG 0.351335 3.3:-87701195 MS.gene014841:intron
TCAGAATTTCTTAGGCCAAC+AGG 0.352089 3.3:-87700728 MS.gene014841:intron
GTATTGCGAGGAAATAAAAT+TGG 0.355817 3.3:-87701756 MS.gene014841:CDS
ACATTTAAAGTTCTCGCTTA+AGG 0.364984 3.3:-87701330 MS.gene014841:CDS
AACAGCATATGCAAAGAGTA+TGG 0.373340 3.3:-87701782 MS.gene014841:intron
TTTAGTATAACTTCACATAT+AGG 0.408560 3.3:+87700586 None:intergenic
GCAAATTAAAGTGAACTGTC+TGG 0.408949 3.3:+87700547 None:intergenic
GGATATGGTAGTTCTTCTCT+TGG 0.411373 3.3:-87701644 MS.gene014841:CDS
TCGAGATTTAGTGTTGCTTC+TGG 0.414371 3.3:-87701387 MS.gene014841:CDS
TTGTGCCGCACTGACGTGAT+TGG 0.414989 3.3:+87703254 None:intergenic
TTAAGCTTTCACCCTCTTGA+TGG 0.416034 3.3:+87701297 None:intergenic
CGCTATTGCCATGATCGGTT+GGG 0.418390 3.3:-87703208 MS.gene014841:CDS
CAAACTCGTTAAAGCTATCA+AGG 0.420450 3.3:+87701720 None:intergenic
AGGAGAGGCCCTTGGGCATA+AGG 0.424355 3.3:+87700606 None:intergenic
GATTTAGTGTTGCTTCTGGC+TGG 0.435086 3.3:-87701383 MS.gene014841:CDS
CACGTCAGTGCGGCACAAAC+AGG 0.435157 3.3:-87703249 MS.gene014841:CDS
CACATATAGGAGAGGCCCTT+GGG 0.435830 3.3:+87700599 None:intergenic
CCGCTATTGCCATGATCGGT+TGG 0.442297 3.3:-87703209 MS.gene014841:CDS
ACGCCGCTCCCAACCGATCA+TGG 0.449214 3.3:+87703200 None:intergenic
CTTTCCCAGTGTGGTCAAAT+GGG 0.463961 3.3:-87701612 MS.gene014841:CDS
CGCACTGACGTGATTGGGAG+CGG 0.465218 3.3:+87703260 None:intergenic
TTTGCAGTTCAAAATGCTAC+CGG 0.466317 3.3:+87701517 None:intergenic
CAAATTAAAGTGAACTGTCT+GGG 0.476342 3.3:+87700548 None:intergenic
TGTGCCGCACTGACGTGATT+GGG 0.486551 3.3:+87703255 None:intergenic
GGAAAATGACAATAAGTGTA+AGG 0.492853 3.3:+87701245 None:intergenic
AAGTTATACTAAATGCATAT+AGG 0.492905 3.3:-87700576 MS.gene014841:CDS
GCACTGACGTGATTGGGAGC+GGG 0.498648 3.3:+87703261 None:intergenic
TCACATATAGGAGAGGCCCT+TGG 0.503066 3.3:+87700598 None:intergenic
CACTGACGTGATTGGGAGCG+GGG 0.506768 3.3:+87703262 None:intergenic
TGATCGGTTGGGAGCGGCGT+AGG 0.517351 3.3:-87703197 MS.gene014841:intron
TAAGCTTTCACCCTCTTGAT+GGG 0.524668 3.3:+87701298 None:intergenic
CAGAATTTCTTAGGCCAACA+GGG 0.529883 3.3:-87700727 MS.gene014841:CDS
GGAATCTAGCTCGAACAGAA+TGG 0.533820 3.3:+87701691 None:intergenic
TACAGTGATATGAAATTGCC+CGG 0.544114 3.3:-87701536 MS.gene014841:CDS
TTCATATCACTGTAAGTGAA+AGG 0.551600 3.3:+87701545 None:intergenic
TTGCCATGATCGGTTGGGAG+CGG 0.553477 3.3:-87703203 MS.gene014841:CDS
TCAACCCATTTGACCACACT+GGG 0.554090 3.3:+87701608 None:intergenic
GTTGAAAGCACTTCATAATG+TGG 0.565738 3.3:-87701222 MS.gene014841:CDS
TTGCAGTTCAAAATGCTACC+GGG 0.565827 3.3:+87701518 None:intergenic
AACAGGTGATGTGGTGGGAG+TGG 0.568872 3.3:-87703232 MS.gene014841:CDS
TTGACATAAGCTCACCCTGT+TGG 0.581225 3.3:+87700713 None:intergenic
GTGGCCGCTATTGCCATGAT+CGG 0.581313 3.3:-87703213 MS.gene014841:CDS
GTCAACCCATTTGACCACAC+TGG 0.581562 3.3:+87701607 None:intergenic
GAGAACTATCCTTATGCCCA+AGG 0.582865 3.3:-87700615 MS.gene014841:CDS
ATGAACAAAGTTCTAAGCGA+AGG 0.585020 3.3:+87701420 None:intergenic
GACCACACTGGGAAAGCCAC+GGG 0.590877 3.3:+87701619 None:intergenic
AGTTCTTCTCTTGGATCCCG+TGG 0.603028 3.3:-87701635 MS.gene014841:CDS
ATCCCGTGGCTTTCCCAGTG+TGG 0.607300 3.3:-87701621 MS.gene014841:CDS
CCAACCGATCATGGCAATAG+CGG 0.607519 3.3:+87703209 None:intergenic
TGACCACACTGGGAAAGCCA+CGG 0.607581 3.3:+87701618 None:intergenic
ACATTATGAAGTGCTTTCAA+CGG 0.609482 3.3:+87701224 None:intergenic
AAAACAAGTCAAGCACAACA+AGG 0.619293 3.3:+87701492 None:intergenic
CAACACCACATTGTACAACA+TGG 0.623902 3.3:+87701585 None:intergenic
AAATTAAAGTGAACTGTCTG+GGG 0.635458 3.3:+87700549 None:intergenic
AAACTCGTTAAAGCTATCAA+GGG 0.652827 3.3:+87701721 None:intergenic
ACTGACGTGATTGGGAGCGG+GGG 0.652989 3.3:+87703263 None:intergenic
TTTAACACCACAGATTGACA+TGG 0.653998 3.3:+87700654 None:intergenic
TATAACTTCACATATAGGAG+AGG 0.656093 3.3:+87700591 None:intergenic
AGAACTATCCTTATGCCCAA+GGG 0.656993 3.3:-87700614 MS.gene014841:CDS
GGCACAAACAGGTGATGTGG+TGG 0.665713 3.3:-87703238 MS.gene014841:CDS
GCACAAACAGGTGATGTGGT+GGG 0.671907 3.3:-87703237 MS.gene014841:CDS
AACTACCATATCCAACCTTG+AGG 0.674203 3.3:+87701654 None:intergenic
TGCGGCACAAACAGGTGATG+TGG 0.674767 3.3:-87703241 MS.gene014841:CDS
CGCTCCCAATCACGTCAGTG+CGG 0.684598 3.3:-87703259 MS.gene014841:CDS
TTGCAAACCATGTCAATCTG+TGG 0.684823 3.3:-87700661 MS.gene014841:CDS
AAACAAGTCAAGCACAACAA+GGG 0.699130 3.3:+87701493 None:intergenic
AAGTGAAAGGAAAGAGACGA+AGG 0.699358 3.3:+87701558 None:intergenic
AGAGTATGGAGAGTATTGCG+AGG 0.719281 3.3:-87701768 MS.gene014841:CDS
GTTGACCATGTTGTACAATG+TGG 0.757470 3.3:-87701590 MS.gene014841:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTGACAAAAAATAAA+AGG + chr3.3:87701379-87701398 None:intergenic 10.0%
!! AACTTCAACAAAAAAAATAT+TGG + chr3.3:87701808-87701827 None:intergenic 15.0%
!! ACAAAACAGTAAAAAAAAAA+TGG + chr3.3:87701060-87701079 None:intergenic 15.0%
!! TATAATATTAATTAAGCACA+AGG + chr3.3:87701452-87701471 None:intergenic 15.0%
!! TTTAAATAAGTAACTATCAA+TGG - chr3.3:87701097-87701116 MS.gene014841:intron 15.0%
!! AAGTTATACTAAATGCATAT+AGG - chr3.3:87703255-87703274 MS.gene014841:CDS 20.0%
!! AATATAATGCGTTTATTTGT+TGG + chr3.3:87701326-87701345 None:intergenic 20.0%
!! AATATATACCATCAGAAATA+AGG + chr3.3:87702736-87702755 None:intergenic 20.0%
!! AGGAAATTATGCAAAAAAAT+CGG - chr3.3:87700798-87700817 MS.gene014841:intron 20.0%
!! CAAATCATTCATAAAGAAAT+CGG - chr3.3:87700887-87700906 MS.gene014841:intron 20.0%
!! TTTAGTATAACTTCACATAT+AGG + chr3.3:87703248-87703267 None:intergenic 20.0%
!!! AATAATCTGAGTTTTATTCT+TGG - chr3.3:87701621-87701640 MS.gene014841:CDS 20.0%
!!! AATATTGGTAATACACTAAA+TGG + chr3.3:87701793-87701812 None:intergenic 20.0%
!!! TTTTCATCTTATTAAATCGA+TGG - chr3.3:87701585-87701604 MS.gene014841:CDS 20.0%
! AAAAAATGGTAACAACAAGA+AGG + chr3.3:87701046-87701065 None:intergenic 25.0%
! CAACTTAGTCAAATTATGAA+AGG + chr3.3:87702811-87702830 None:intergenic 25.0%
! GGAAATTATGCAAAAAAATC+GGG - chr3.3:87700799-87700818 MS.gene014841:intron 25.0%
! TGCATATTTCAGAATTTCTT+AGG - chr3.3:87703095-87703114 MS.gene014841:intron 25.0%
! TTAGTCAAATTATGAAAGGT+AGG + chr3.3:87702807-87702826 None:intergenic 25.0%
!!! GCTACAAATTCATTTTTTGA+AGG + chr3.3:87701288-87701307 None:intergenic 25.0%
!!! TATTTTGACCTTATTTCTGA+TGG - chr3.3:87702725-87702744 MS.gene014841:intron 25.0%
AAAAGGAAGAATGATGAAGA+TGG - chr3.3:87700926-87700945 MS.gene014841:intron 30.0%
AAACTCGTTAAAGCTATCAA+GGG + chr3.3:87702113-87702132 None:intergenic 30.0%
AAGAAGAAGAAGTGAAAGAA+TGG - chr3.3:87700707-87700726 MS.gene014841:CDS 30.0%
ACATAAACGCATCAACTAAA+AGG + chr3.3:87701655-87701674 None:intergenic 30.0%
ACTGCACATAGAACTAAATA+AGG - chr3.3:87702636-87702655 MS.gene014841:intron 30.0%
ACTTCATGTCCAGAAAAATT+GGG - chr3.3:87703025-87703044 MS.gene014841:intron 30.0%
AGAAGAAGAAGTGAAAGAAT+GGG - chr3.3:87700708-87700727 MS.gene014841:CDS 30.0%
GGAAAATGACAATAAGTGTA+AGG + chr3.3:87702589-87702608 None:intergenic 30.0%
GTATGCAAATCTTCAAGAAT+TGG + chr3.3:87702478-87702497 None:intergenic 30.0%
GTATTGCGAGGAAATAAAAT+TGG - chr3.3:87702075-87702094 MS.gene014841:intron 30.0%
TAGAAATGTCAGAAAGAACA+AGG - chr3.3:87701882-87701901 MS.gene014841:intron 30.0%
TATAACTTCACATATAGGAG+AGG + chr3.3:87703243-87703262 None:intergenic 30.0%
TCTTCTTCTTCACTTTGAAT+GGG + chr3.3:87700685-87700704 None:intergenic 30.0%
TTCACTCTATCAACTCTAAT+TGG - chr3.3:87702835-87702854 MS.gene014841:intron 30.0%
TTCATATCACTGTAAGTGAA+AGG + chr3.3:87702289-87702308 None:intergenic 30.0%
TTCTTCTTCTTCACTTTGAA+TGG + chr3.3:87700686-87700705 None:intergenic 30.0%
! ACATTATGAAGTGCTTTCAA+CGG + chr3.3:87702610-87702629 None:intergenic 30.0%
! ACATTTAAAGTTCTCGCTTA+AGG - chr3.3:87702501-87702520 MS.gene014841:intron 30.0%
! TGAAAACTTTGTTGTCAATG+CGG + chr3.3:87701571-87701590 None:intergenic 30.0%
! TTTTTGTTGAAGTTGAGACT+TGG - chr3.3:87701814-87701833 MS.gene014841:intron 30.0%
!! CTTGTTTTCATTTAATGCGA+AGG - chr3.3:87702354-87702373 MS.gene014841:intron 30.0%
!! GATGAGGTTTGTTAAGTTTA+GGG - chr3.3:87702912-87702931 MS.gene014841:intron 30.0%
!! GATGGATTATGAATTTGTGA+CGG - chr3.3:87700944-87700963 MS.gene014841:intron 30.0%
!! TCTGAAATATGCAAGTTTTG+AGG + chr3.3:87703088-87703107 None:intergenic 30.0%
!! TTCTGGTTTAAACATGAATG+TGG - chr3.3:87701711-87701730 MS.gene014841:CDS 30.0%
!!! TTTTAGTTTTAGTGTCTGCA+TGG - chr3.3:87701474-87701493 MS.gene014841:CDS 30.0%
AAAACAAGTCAAGCACAACA+AGG + chr3.3:87702342-87702361 None:intergenic 35.0%
AAAATGAATTTGTAGCCACG+AGG - chr3.3:87701292-87701311 MS.gene014841:CDS 35.0%
AAACAAGTCAAGCACAACAA+GGG + chr3.3:87702341-87702360 None:intergenic 35.0%
AACAGCATATGCAAAGAGTA+TGG - chr3.3:87702049-87702068 MS.gene014841:intron 35.0%
ATACTCTTTGCATATGCTGT+TGG + chr3.3:87702050-87702069 None:intergenic 35.0%
ATGACCTAAGCTAACAGATT+GGG - chr3.3:87701020-87701039 MS.gene014841:intron 35.0%
CAAACTCGTTAAAGCTATCA+AGG + chr3.3:87702114-87702133 None:intergenic 35.0%
CAAATCGTGAAAAAGGAAGA+AGG - chr3.3:87700826-87700845 MS.gene014841:intron 35.0%
GACTTCATGTCCAGAAAAAT+TGG - chr3.3:87703024-87703043 MS.gene014841:intron 35.0%
GCAAAGCAAATCGTGAAAAA+AGG - chr3.3:87700909-87700928 MS.gene014841:intron 35.0%
TACAGTGATATGAAATTGCC+CGG - chr3.3:87702295-87702314 MS.gene014841:intron 35.0%
TATGACCTAAGCTAACAGAT+TGG - chr3.3:87701019-87701038 MS.gene014841:intron 35.0%
TTGGGAGAAAAGAGAGAATA+TGG + chr3.3:87701949-87701968 None:intergenic 35.0%
TTTAACACCACAGATTGACA+TGG + chr3.3:87703180-87703199 None:intergenic 35.0%
TTTGCAGTTCAAAATGCTAC+CGG + chr3.3:87702317-87702336 None:intergenic 35.0%
! ACGATCATCAGTTTTCTTTC+TGG - chr3.3:87701694-87701713 MS.gene014841:CDS 35.0%
! ATCTGTTAGCTTAGGTCATA+AGG + chr3.3:87701019-87701038 None:intergenic 35.0%
! GAAAACTTTGTTGTCAATGC+GGG + chr3.3:87701570-87701589 None:intergenic 35.0%
! TTCTAAGCGAAGGATTTTGA+GGG + chr3.3:87702404-87702423 None:intergenic 35.0%
!! ATGAACAAAGTTCTAAGCGA+AGG + chr3.3:87702414-87702433 None:intergenic 35.0%
!! ATTTGTTTCTGTCGTAGACA+AGG - chr3.3:87700778-87700797 MS.gene014841:intron 35.0%
!! GGATGAGGTTTGTTAAGTTT+AGG - chr3.3:87702911-87702930 MS.gene014841:intron 35.0%
!! GTTGAAAGCACTTCATAATG+TGG - chr3.3:87702609-87702628 MS.gene014841:intron 35.0%
!!! AAGTTTTGAGGTGTAGTGAA+AGG + chr3.3:87703076-87703095 None:intergenic 35.0%
AAATTGGGAGGACCCAAAAT+TGG - chr3.3:87703040-87703059 MS.gene014841:intron 40.0%
AACTACCATATCCAACCTTG+AGG + chr3.3:87702180-87702199 None:intergenic 40.0%
AAGAAACTAGGGTGGATGAT+TGG - chr3.3:87700982-87701001 MS.gene014841:intron 40.0%
AAGTGAAAGGAAAGAGACGA+AGG + chr3.3:87702276-87702295 None:intergenic 40.0%
AATATGGCAGAGATCGGTAT+CGG + chr3.3:87701933-87701952 None:intergenic 40.0%
AGAACTATCCTTATGCCCAA+GGG - chr3.3:87703217-87703236 MS.gene014841:CDS 40.0%
AGAGAGAATATGGCAGAGAT+CGG + chr3.3:87701939-87701958 None:intergenic 40.0%
AGGGACGCATAATATATGCA+GGG - chr3.3:87701227-87701246 MS.gene014841:CDS 40.0%
ATCGTGAAAAAGGAAGAAGG+TGG - chr3.3:87700829-87700848 MS.gene014841:intron 40.0%
ATGAATTTGTGACGGCAGAT+GGG - chr3.3:87700952-87700971 MS.gene014841:intron 40.0%
ATGGGAGAGAGAAAGAAACT+AGG - chr3.3:87700970-87700989 MS.gene014841:intron 40.0%
CAACACCACATTGTACAACA+TGG + chr3.3:87702249-87702268 None:intergenic 40.0%
CAGAATTTCTTAGGCCAACA+GGG - chr3.3:87703104-87703123 MS.gene014841:intron 40.0%
CATAATATATGCAGGGGTTG+GGG - chr3.3:87701234-87701253 MS.gene014841:CDS 40.0%
CTTGAGGTGAAAACTCTTGA+TGG + chr3.3:87702164-87702183 None:intergenic 40.0%
GCATAATATATGCAGGGGTT+GGG - chr3.3:87701233-87701252 MS.gene014841:CDS 40.0%
GGATATGGTAGTTCTTCTCT+TGG - chr3.3:87702187-87702206 MS.gene014841:intron 40.0%
GGGAAAGCAAATCGTGAAAA+AGG - chr3.3:87700819-87700838 MS.gene014841:intron 40.0%
GTGGAGTATGCTATTACTTG+TGG - chr3.3:87701730-87701749 MS.gene014841:CDS 40.0%
GTTGACCATGTTGTACAATG+TGG - chr3.3:87702241-87702260 MS.gene014841:intron 40.0%
TAAGCTTGAAAACCTTGAGC+TGG - chr3.3:87702890-87702909 MS.gene014841:intron 40.0%
TAAGCTTTCACCCTCTTGAT+GGG + chr3.3:87702536-87702555 None:intergenic 40.0%
TATGAATTTGTGACGGCAGA+TGG - chr3.3:87700951-87700970 MS.gene014841:intron 40.0%
TCAGAATTTCTTAGGCCAAC+AGG - chr3.3:87703103-87703122 MS.gene014841:intron 40.0%
TCATGTCCAGAAAAATTGGG+AGG - chr3.3:87703028-87703047 MS.gene014841:intron 40.0%
TGAAGTTGAGACTTGGCATT+TGG - chr3.3:87701821-87701840 MS.gene014841:intron 40.0%
TGGGAGAGAGAAAGAAACTA+GGG - chr3.3:87700971-87700990 MS.gene014841:intron 40.0%
TTAAGCTTTCACCCTCTTGA+TGG + chr3.3:87702537-87702556 None:intergenic 40.0%
TTGCAAACCATGTCAATCTG+TGG - chr3.3:87703170-87703189 MS.gene014841:intron 40.0%
TTGCAGTTCAAAATGCTACC+GGG + chr3.3:87702316-87702335 None:intergenic 40.0%
TTGTTGTCAATGCGGGAATA+CGG + chr3.3:87701563-87701582 None:intergenic 40.0%
TTTCACCTCAAGGTTGGATA+TGG - chr3.3:87702172-87702191 MS.gene014841:intron 40.0%
! AAGAAGGTGGATTCAATGTG+TGG - chr3.3:87700842-87700861 MS.gene014841:intron 40.0%
! AAGAGTTTTCACCTCAAGGT+TGG - chr3.3:87702166-87702185 MS.gene014841:intron 40.0%
! CATCAAGAGTTTTCACCTCA+AGG - chr3.3:87702162-87702181 MS.gene014841:intron 40.0%
! GACTCTTTTACCCATCAAGA+GGG - chr3.3:87702523-87702542 MS.gene014841:intron 40.0%
!! AGCTCAAGGTTTTCAAGCTT+AGG + chr3.3:87702891-87702910 None:intergenic 40.0%
!! GCTCAAGGTTTTCAAGCTTA+GGG + chr3.3:87702890-87702909 None:intergenic 40.0%
!! GTTCTAAGCGAAGGATTTTG+AGG + chr3.3:87702405-87702424 None:intergenic 40.0%
!! TCGAGATTTAGTGTTGCTTC+TGG - chr3.3:87702444-87702463 MS.gene014841:intron 40.0%
AACAAACCTCATCCAGCTCA+AGG + chr3.3:87702905-87702924 None:intergenic 45.0%
ACTAGGGTGGATGATTGGAT+TGG - chr3.3:87700987-87701006 MS.gene014841:intron 45.0%
ATATGGCAGAGATCGGTATC+GGG + chr3.3:87701932-87701951 None:intergenic 45.0%
CAGGGACGCATAATATATGC+AGG - chr3.3:87701226-87701245 MS.gene014841:CDS 45.0%
CCATTGATGCTTCCATCTCT+TGG + chr3.3:87702002-87702021 None:intergenic 45.0%
CGCATAATATATGCAGGGGT+TGG - chr3.3:87701232-87701251 MS.gene014841:CDS 45.0%
CTAGGGTGGATGATTGGATT+GGG - chr3.3:87700988-87701007 MS.gene014841:intron 45.0%
CTTTCCCAGTGTGGTCAAAT+GGG - chr3.3:87702219-87702238 MS.gene014841:intron 45.0%
GAGAACTATCCTTATGCCCA+AGG - chr3.3:87703216-87703235 MS.gene014841:CDS 45.0%
GAGAGAGAAAGAAACTAGGG+TGG - chr3.3:87700974-87700993 MS.gene014841:intron 45.0%
GATGCTTCCATCTCTTGGAT+AGG + chr3.3:87701997-87702016 None:intergenic 45.0%
GGGACGCATAATATATGCAG+GGG - chr3.3:87701228-87701247 MS.gene014841:CDS 45.0%
TCAACCCATTTGACCACACT+GGG + chr3.3:87702226-87702245 None:intergenic 45.0%
TGAAAACCTTGAGCTGGATG+AGG - chr3.3:87702896-87702915 MS.gene014841:intron 45.0%
TGAGCTTAACTCAGTTGGCA+GGG - chr3.3:87701208-87701227 MS.gene014841:CDS 45.0%
TGTCGTGAGCTTAACTCAGT+TGG - chr3.3:87701203-87701222 MS.gene014841:CDS 45.0%
TGTTGTCAATGCGGGAATAC+GGG + chr3.3:87701562-87701581 None:intergenic 45.0%
TTGACATAAGCTCACCCTGT+TGG + chr3.3:87703121-87703140 None:intergenic 45.0%
! AAGGCCCAATCTGTTAGCTT+AGG + chr3.3:87701027-87701046 None:intergenic 45.0%
! AGGCGAATGAGCAAAGTGTT+AGG + chr3.3:87701268-87701287 None:intergenic 45.0%
! CTCTTTTCTCCCAACCAAAC+AGG - chr3.3:87701955-87701974 MS.gene014841:intron 45.0%
! GGAATCTAGCTCGAACAGAA+TGG + chr3.3:87702143-87702162 None:intergenic 45.0%
! GGACTCTTTTACCCATCAAG+AGG - chr3.3:87702522-87702541 MS.gene014841:intron 45.0%
! GGCATTGCGGAACCAATTTT+GGG + chr3.3:87703055-87703074 None:intergenic 45.0%
! TTGGGTCCTCCCAATTTTTC+TGG + chr3.3:87703037-87703056 None:intergenic 45.0%
!! AAGCGAAGGATTTTGAGGGA+GGG + chr3.3:87702400-87702419 None:intergenic 45.0%
!! AGAGTATGGAGAGTATTGCG+AGG - chr3.3:87702063-87702082 MS.gene014841:intron 45.0%
!! AGGCATTGCGGAACCAATTT+TGG + chr3.3:87703056-87703075 None:intergenic 45.0%
!! AGGTGTAGTGAAAGGCATTG+CGG + chr3.3:87703068-87703087 None:intergenic 45.0%
!! CCAAGAGATGGAAGCATCAA+TGG - chr3.3:87701999-87702018 MS.gene014841:intron 45.0%
!! GATTTAGTGTTGCTTCTGGC+TGG - chr3.3:87702448-87702467 MS.gene014841:intron 45.0%
!! GGTTTTCAAGCTTAGGGCAA+TGG + chr3.3:87702884-87702903 None:intergenic 45.0%
!! TAAGCGAAGGATTTTGAGGG+AGG + chr3.3:87702401-87702420 None:intergenic 45.0%
!! TTTATCTATATTAATTATTA+GGG - chr3.3:87702984-87703003 MS.gene014841:intron 5.0%
!!! ATAAATATTTTATTAGTATT+TGG + chr3.3:87701131-87701150 None:intergenic 5.0%
!!! TTTTATCTATATTAATTATT+AGG - chr3.3:87702983-87703002 MS.gene014841:intron 5.0%
ACCCAAAAATTGGAGCGGAG+CGG + chr3.3:87701531-87701550 None:intergenic 50.0%
AGTTCTTCTCTTGGATCCCG+TGG - chr3.3:87702196-87702215 MS.gene014841:intron 50.0%
CACATATAGGAGAGGCCCTT+GGG + chr3.3:87703235-87703254 None:intergenic 50.0%
CCAACCGATCATGGCAATAG+CGG + chr3.3:87700625-87700644 None:intergenic 50.0%
CGCTATTGCCATGATCGGTT+GGG - chr3.3:87700623-87700642 MS.gene014841:CDS 50.0%
CTAGCGTCCTATCCAAGAGA+TGG - chr3.3:87701987-87702006 MS.gene014841:intron 50.0%
GCACAAACAGGTGATGTGGT+GGG - chr3.3:87700594-87700613 MS.gene014841:CDS 50.0%
GCTTTCCCAGTGTGGTCAAA+TGG - chr3.3:87702218-87702237 MS.gene014841:intron 50.0%
GGCCAACCCAAAAATTGGAG+CGG + chr3.3:87701536-87701555 None:intergenic 50.0%
GTCAACCCATTTGACCACAC+TGG + chr3.3:87702227-87702246 None:intergenic 50.0%
GTGAGCTTAACTCAGTTGGC+AGG - chr3.3:87701207-87701226 MS.gene014841:CDS 50.0%
TCACATATAGGAGAGGCCCT+TGG + chr3.3:87703236-87703255 None:intergenic 50.0%
TCTCTTGGATAGGACGCTAG+TGG + chr3.3:87701987-87702006 None:intergenic 50.0%
TGGCAACAGCCTGTTTGGTT+GGG + chr3.3:87701967-87701986 None:intergenic 50.0%
TTGTTGGTCAAGTAGCCTCG+TGG + chr3.3:87701310-87701329 None:intergenic 50.0%
! GTGGATGATTGGATTGGGCT+AGG - chr3.3:87700993-87701012 MS.gene014841:intron 50.0%
! TCCGCTCCGCTCCAATTTTT+GGG - chr3.3:87701527-87701546 MS.gene014841:CDS 50.0%
! TTCCGCTCCGCTCCAATTTT+TGG - chr3.3:87701526-87701545 MS.gene014841:CDS 50.0%
!! AGCGAAGGATTTTGAGGGAG+GGG + chr3.3:87702399-87702418 None:intergenic 50.0%
!!! CTCCGCTCCAATTTTTGGGT+TGG - chr3.3:87701531-87701550 MS.gene014841:CDS 50.0%
AAATTGGAGCGGAGCGGAAG+CGG + chr3.3:87701525-87701544 None:intergenic 55.0%
CCGCTATTGCCATGATCGGT+TGG - chr3.3:87700622-87700641 MS.gene014841:CDS 55.0%
GCTAGTGGCAACAGCCTGTT+TGG + chr3.3:87701972-87701991 None:intergenic 55.0%
GGAGCGGCCAACCCAAAAAT+TGG + chr3.3:87701541-87701560 None:intergenic 55.0%
GGCACAAACAGGTGATGTGG+TGG - chr3.3:87700593-87700612 MS.gene014841:CDS 55.0%
GTGGCAACAGCCTGTTTGGT+TGG + chr3.3:87701968-87701987 None:intergenic 55.0%
GTGGCCGCTATTGCCATGAT+CGG - chr3.3:87700618-87700637 MS.gene014841:CDS 55.0%
TCAATGCGGGAATACGGGAG+CGG + chr3.3:87701557-87701576 None:intergenic 55.0%
TGACCACACTGGGAAAGCCA+CGG + chr3.3:87702216-87702235 None:intergenic 55.0%
TGCGGCACAAACAGGTGATG+TGG - chr3.3:87700590-87700609 MS.gene014841:CDS 55.0%
TTGCCATGATCGGTTGGGAG+CGG - chr3.3:87700628-87700647 MS.gene014841:CDS 55.0%
! AACAGGTGATGTGGTGGGAG+TGG - chr3.3:87700599-87700618 MS.gene014841:CDS 55.0%
! TGTGCCGCACTGACGTGATT+GGG + chr3.3:87700579-87700598 None:intergenic 55.0%
! TTGTGCCGCACTGACGTGAT+TGG + chr3.3:87700580-87700599 None:intergenic 55.0%
AATTGGAGCGGAGCGGAAGC+GGG + chr3.3:87701524-87701543 None:intergenic 60.0%
ACTGACGTGATTGGGAGCGG+GGG + chr3.3:87700571-87700590 None:intergenic 60.0%
AGGAGAGGCCCTTGGGCATA+AGG + chr3.3:87703228-87703247 None:intergenic 60.0%
ATCCCGTGGCTTTCCCAGTG+TGG - chr3.3:87702210-87702229 MS.gene014841:intron 60.0%
CACGTCAGTGCGGCACAAAC+AGG - chr3.3:87700582-87700601 MS.gene014841:CDS 60.0%
CACTGACGTGATTGGGAGCG+GGG + chr3.3:87700572-87700591 None:intergenic 60.0%
CGCTCCCAATCACGTCAGTG+CGG - chr3.3:87700572-87700591 MS.gene014841:CDS 60.0%
GACCACACTGGGAAAGCCAC+GGG + chr3.3:87702215-87702234 None:intergenic 60.0%
! CGCACTGACGTGATTGGGAG+CGG + chr3.3:87700574-87700593 None:intergenic 60.0%
! GCACTGACGTGATTGGGAGC+GGG + chr3.3:87700573-87700592 None:intergenic 60.0%
ACGCCGCTCCCAACCGATCA+TGG + chr3.3:87700634-87700653 None:intergenic 65.0%
ATTGGAGCGGAGCGGAAGCG+GGG + chr3.3:87701523-87701542 None:intergenic 65.0%
TGATCGGTTGGGAGCGGCGT+AGG - chr3.3:87700634-87700653 MS.gene014841:CDS 65.0%
TTGGAGCGGAGCGGAAGCGG+GGG + chr3.3:87701522-87701541 None:intergenic 70.0%
GCGGAAGCGGGGGAGCGGAA+TGG + chr3.3:87701512-87701531 None:intergenic 75.0%
! GCGGAGCGGAAGCGGGGGAG+CGG + chr3.3:87701517-87701536 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 87700552 87703301 87700552 ID=MS.gene014841
chr3.3 mRNA 87700552 87703301 87700552 ID=MS.gene014841.t1;Parent=MS.gene014841
chr3.3 exon 87703198 87703301 87703198 ID=MS.gene014841.t1.exon1;Parent=MS.gene014841.t1
chr3.3 CDS 87703198 87703301 87703198 ID=cds.MS.gene014841.t1;Parent=MS.gene014841.t1
chr3.3 exon 87701196 87701799 87701196 ID=MS.gene014841.t1.exon2;Parent=MS.gene014841.t1
chr3.3 CDS 87701196 87701799 87701196 ID=cds.MS.gene014841.t1;Parent=MS.gene014841.t1
chr3.3 exon 87700552 87700746 87700552 ID=MS.gene014841.t1.exon3;Parent=MS.gene014841.t1
chr3.3 CDS 87700552 87700746 87700552 ID=cds.MS.gene014841.t1;Parent=MS.gene014841.t1
Gene Sequence

>MS.gene014841

ATGCGGAAAAATAAAGCCCCCGCTCCCAATCACGTCAGTGCGGCACAAACAGGTGATGTGGTGGGAGTGGCCGCTATTGCCATGATCGGTTGGGAGCGGCGTAGGTCATAGTGACTTGTAGATCATTTTTCCCATTCAAAGTGAAGAAGAAGAAGAAGAAGAAGAAGTGAAAGAATGGGTGAAGATCTCTGTATAAGTACGATGAAGATGATTTTGATTTAGATGCATTTGTTTCTGTCGTAGACAAGGAAATTATGCAAAAAAATCGGGAAAGCAAATCGTGAAAAAGGAAGAAGGTGGATTCAATGTGTGGATTTATTTCTGTCACTAACATGCAAATCATTCATAAAGAAATCGGCAAAGCAAATCGTGAAAAAAGGAAGAATGATGAAGATGGATTATGAATTTGTGACGGCAGATGGGAGAGAGAAAGAAACTAGGGTGGATGATTGGATTGGGCTAGGCCTTATGACCTAAGCTAACAGATTGGGCCTTCTTGTTGTTACCATTTTTTTTTTACTGTTTTGTTATATGAAATCAATTAATTTAAATAAGTAACTATCAATGGTATTAGTACCAAATACTAATAAAATATTTATTTTTCAATTATATTAATAATATATGTTTCATTTATATTATACATTTTATTTTTGTCGTGAGCTTAACTCAGTTGGCAGGGACGCATAATATATGCAGGGGTTGGGGTTCAAACTCCTAACACTTTGCTCATTCGCCTTCAAAAAATGAATTTGTAGCCACGAGGCTACTTGACCAACAAATAAACGCATTATATTTTTAATACTAAAACAATTAATCATCTTTAACCTTTTATTTTTTGTCAAAAATAAATCTTTAACTTTTCATTTATATTTATATTAAATATTTGTGTCATACTTTCCTTGTGCTTAATTAATATTATAATTTTTAGTTTTAGTGTCTGCATGGCTGAAATAGTGTCCATTCCGCTCCCCCGCTTCCGCTCCGCTCCAATTTTTGGGTTGGCCGCTCCCGTATTCCCGCATTGACAACAAAGTTTTCATCTTATTAAATCGATGGTTTATTTTAATACAATAATCTGAGTTTTATTCTTGGTCTAATCTCCTTTTAGTTGATGCGTTTATGTTAACAATTTTGCAGCACTTACGATCATCAGTTTTCTTTCTGGTTTAAACATGAATGTGGAGTATGCTATTACTTGTGGTGTTTGTTTATGTTTGATATCTTGCATAACACATTTTCCATTTAGTGTATTACCAATATTTTTTTTGTTGAAGTTGAGACTTGGCATTTGGTTTATTTTTGTTGTGCAGAATTTCAAGTTTTGATACAGTAGAAATGTCAGAAAGAACAAGGAATTATGATGTAATCAGCAGTTTACCCGATACCGATCTCTGCCATATTCTCTCTTTTCTCCCAACCAAACAGGCTGTTGCCACTAGCGTCCTATCCAAGAGATGGAAGCATCAATGGCGCTCAGTTTTTTATATCAACTTAACCAACAGCATATGCAAAGAGTATGGAGAGTATTGCGAGGAAATAAAATTGGATACTCAATATGCCCTTGATAGCTTTAACGAGTTTGTGAACTCCATTCTGTTCGAGCTAGATTCCATCAAGAGTTTTCACCTCAAGGTTGGATATGGTAGTTCTTCTCTTGGATCCCGTGGCTTTCCCAGTGTGGTCAAATGGGTTGACCATGTTGTACAATGTGGTGTTGAGAGCCTTCGTCTCTTTCCTTTCACTTACAGTGATATGAAATTGCCCGGTAGCATTTTGAACTGCAAAACCCTTGTTGTGCTTGACTTGTTTTCATTTAATGCGAAGGATTTTTCTTCTGTTAGACTCCCCTCCCTCAAAATCCTTCGCTTAGAACTTTGTTCATTTCTAAATGATCGAGATTTAGTGTTGCTTCTGGCTGGATGTCCAATTCTTGAAGATTTGCATACAGAACATTTAAAGTTCTCGCTTAAGGACTCTTTTACCCATCAAGAGGGTGAAAGCTTAAGCTTAAGCAAGTTGACTAAAGCAGAAATGCCTTACACTTATTGTCATTTTCCGTTGAAAGCACTTCATAATGTGGAGAAACTGCACATAGAACTAAATAAGGTTTGAAATTTATTATTGCTATATGAATACACTTGTTGTCATTTTGTTTTTGCTTTTCTTTTGAAAATATTTTGACCTTATTTCTGATGGTATATATTTCTATGTTGTTTACTTGTTTTTAGATGTATCGAAGTTTTGATGAGATTCCTACCTTTCATAATTTGACTAAGTTGAAACTTCACTCTATCAACTCTAATTGGAATTTGTTATTGCAAGTGCTCAACCATTGCCCTAAGCTTGAAAACCTTGAGCTGGATGAGGTTTGTTAAGTTTAGGGATCTTATGTTATTTTATTCTATCTTACATGATTTTATGATTTAATTTATTTTATCTATATTAATTATTAGGGCTCGACGATTGATAGAAGACTTCATGTCCAGAAAAATTGGGAGGACCCAAAATTGGTTCCGCAATGCCTTTCACTACACCTCAAAACTTGCATATTTCAGAATTTCTTAGGCCAACAGGGTGAGCTTATGTCAACAATATATATTCTGAAGAATGCAAGAGTTTTGCAAACCATGTCAATCTGTGGTGTTAAAGCTCTCGAAGTTGAAAGAGAACTATCCTTATGCCCAAGGGCCTCTCCTATATGTGAAGTTATACTAAATGCATATAGGTTCTCCCCAGACAGTTCACTTTAA
Protein sequence

>MS.gene014841.t1

MRKNKAPAPNHVSAAQTGDVVGVAAIAMIGWERRSICKEYGEYCEEIKLDTQYALDSFNEFVNSILFELDSIKSFHLKVGYGSSSLGSRGFPSVVKWVDHVVQCGVESLRLFPFTYSDMKLPGSILNCKTLVVLDLFSFNAKDFSSVRLPSLKILRLELCSFLNDRDLVLLLAGCPILEDLHTEHLKFSLKDSFTHQEGESLSLSKLTKAEMPYTYCHFPLKALHNVEKLHIELNKNFLGQQGELMSTIYILKNARVLQTMSICGVKALEVERELSLCPRASPICEVILNAYRFSPDSSL