AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046838

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046838.t1 MTR_7g056433 80.275 218 38 1 1 218 125 337 2.66e-125 361
MS.gene046838.t1 MTR_7g115270 48.649 222 100 5 6 218 134 350 5.00e-60 194
MS.gene046838.t1 MTR_5g013500 43.627 204 99 6 28 220 116 314 6.65e-43 149
MS.gene046838.t1 MTR_3g036250 40.278 216 109 4 5 218 121 318 7.80e-43 149
MS.gene046838.t1 MTR_7g098570 37.247 247 135 7 6 242 135 371 1.32e-41 148
MS.gene046838.t1 MTR_3g040700 40.278 216 108 5 5 218 159 355 2.28e-40 144
MS.gene046838.t1 MTR_7g098510 40.092 217 116 6 6 218 133 339 1.84e-38 138
MS.gene046838.t1 MTR_7g098480 35.223 247 138 9 6 242 133 367 1.13e-36 135
MS.gene046838.t1 MTR_5g008950 35.160 219 126 6 4 218 109 315 5.07e-34 126
MS.gene046838.t1 MTR_7g056420 43.256 215 83 7 6 211 122 306 9.88e-34 129
MS.gene046838.t1 MTR_7g056430 43.256 215 83 7 6 211 122 306 1.09e-33 129
MS.gene046838.t1 MTR_7g056417 49.351 154 71 2 5 151 4 157 1.19e-33 119
MS.gene046838.t1 MTR_1g041245 39.269 219 113 8 8 218 129 335 3.01e-33 124
MS.gene046838.t1 MTR_7g007080 39.130 207 106 6 8 207 129 322 9.92e-33 123
MS.gene046838.t1 MTR_7g033915 38.756 209 96 8 11 218 137 314 4.57e-32 120
MS.gene046838.t1 MTR_7g033990 42.788 208 105 8 11 218 139 332 7.59e-32 121
MS.gene046838.t1 MTR_7g034115 38.140 215 118 7 8 218 129 332 3.92e-31 118
MS.gene046838.t1 MTR_7g034120 39.810 211 111 8 11 218 64 261 3.68e-30 114
MS.gene046838.t1 MTR_5g007410 32.218 239 146 6 6 237 143 372 3.77e-30 117
MS.gene046838.t1 MTR_7g032380 32.719 217 99 6 8 218 130 305 1.54e-29 114
MS.gene046838.t1 MTR_5g008920 33.191 235 143 7 7 238 128 351 3.58e-29 113
MS.gene046838.t1 MTR_3g082890 35.065 231 127 7 6 218 210 435 7.71e-29 114
MS.gene046838.t1 MTR_2g007450 33.193 238 118 7 7 218 151 373 8.25e-28 110
MS.gene046838.t1 MTR_7g088260 34.821 224 121 7 3 217 203 410 2.13e-27 109
MS.gene046838.t1 MTR_3g023630 34.884 215 120 8 6 216 126 324 9.52e-27 106
MS.gene046838.t1 MTR_7g032370 32.870 216 120 7 7 218 107 301 6.32e-26 103
MS.gene046838.t1 MTR_3g087260 34.167 240 146 6 2 238 195 425 1.59e-25 104
MS.gene046838.t1 MTR_0009s0080 32.743 226 128 7 5 218 135 348 6.61e-25 102
MS.gene046838.t1 MTR_6g045333 32.489 237 142 6 5 233 180 406 8.91e-25 102
MS.gene046838.t1 MTR_0492s0020 33.333 231 143 5 8 238 199 418 1.75e-24 101
MS.gene046838.t1 MTR_0543s0010 33.333 231 143 5 8 238 199 418 2.26e-24 100
MS.gene046838.t1 MTR_7g056277 35.749 207 118 5 12 218 385 576 2.28e-24 101
MS.gene046838.t1 MTR_5g083890 34.562 217 115 8 8 210 142 345 5.10e-24 100
MS.gene046838.t1 MTR_4g039440 34.247 219 121 8 1 209 143 348 7.05e-24 99.4
MS.gene046838.t1 MTR_3g108560 33.469 245 140 8 4 238 126 357 2.24e-23 97.8
MS.gene046838.t1 MTR_1g107385 34.742 213 117 7 8 210 166 366 3.45e-23 97.4
MS.gene046838.t1 MTR_3g107100 33.482 224 120 8 7 218 131 337 7.71e-23 96.3
MS.gene046838.t1 MTR_5g045170 30.189 265 146 8 1 246 123 367 9.00e-23 96.3
MS.gene046838.t1 MTR_1g085120 36.150 213 113 9 7 209 211 410 1.22e-22 96.3
MS.gene046838.t1 MTR_1g085120 36.150 213 113 9 7 209 286 485 1.29e-22 96.7
MS.gene046838.t1 MTR_3g082890 29.851 268 128 8 6 218 130 392 1.76e-22 95.5
MS.gene046838.t1 MTR_5g073420 33.333 225 124 8 8 230 134 334 1.85e-22 95.1
MS.gene046838.t1 MTR_7g056287 34.783 207 120 5 12 218 129 320 1.99e-22 94.7
MS.gene046838.t1 MTR_3g107120 30.603 232 130 7 3 222 137 349 2.33e-22 95.1
MS.gene046838.t1 MTR_1g053025 29.358 218 127 6 7 209 128 333 4.09e-22 94.4
MS.gene046838.t1 MTR_2g007400 32.381 210 118 7 11 209 148 344 4.44e-22 94.4
MS.gene046838.t1 MTR_3g071850 28.378 222 144 5 3 216 141 355 1.35e-21 94.0
MS.gene046838.t1 MTR_2g008320 32.547 212 123 6 7 211 172 370 2.13e-21 92.8
MS.gene046838.t1 MTR_3g109982 33.028 218 135 6 3 218 215 423 3.42e-21 92.8
MS.gene046838.t1 MTR_5g058000 36.098 205 111 8 6 207 124 311 5.57e-21 90.9
MS.gene046838.t1 MTR_7g114710 34.466 206 97 9 16 216 141 313 5.74e-21 90.9
MS.gene046838.t1 MTR_2g007500 31.556 225 127 6 8 216 121 334 6.65e-21 90.1
MS.gene046838.t1 MTR_3g026920 31.081 222 104 7 8 210 164 355 1.25e-20 90.1
MS.gene046838.t1 MTR_5g073370 34.783 207 120 6 6 209 126 320 3.63e-20 88.6
MS.gene046838.t1 MTR_7g081290 41.667 108 56 3 116 218 104 209 4.04e-20 86.7
MS.gene046838.t1 MTR_5g058100 34.783 207 112 9 11 209 131 322 4.42e-20 88.6
MS.gene046838.t1 MTR_6g022500 32.870 216 122 9 1 209 216 415 5.50e-20 88.6
MS.gene046838.t1 MTR_2g036470 30.041 243 154 6 1 237 128 360 6.83e-20 88.2
MS.gene046838.t1 MTR_2g008310 32.701 211 121 6 7 210 118 314 1.04e-19 87.4
MS.gene046838.t1 MTR_3g108150 33.184 223 132 8 3 218 123 335 1.33e-19 87.0
MS.gene046838.t1 MTR_2g020180 32.768 177 94 5 54 218 3 166 2.81e-19 83.6
MS.gene046838.t1 MTR_5g039470 28.571 245 147 7 6 237 99 328 4.86e-19 85.1
MS.gene046838.t1 MTR_5g012840 33.178 214 83 8 11 218 109 268 8.87e-19 84.0
MS.gene046838.t1 MTR_6g011460 35.096 208 115 8 7 209 165 357 1.23e-18 84.7
MS.gene046838.t1 MTR_3g105060 33.333 210 114 8 6 211 131 318 1.26e-18 84.3
MS.gene046838.t1 MTR_7g075820 32.093 215 117 9 8 211 142 338 1.33e-18 84.3
MS.gene046838.t1 MTR_3g099830 31.250 224 108 9 8 210 118 316 1.99e-18 83.6
MS.gene046838.t1 MTR_1g108820 31.111 225 114 8 6 209 121 325 2.17e-18 83.6
MS.gene046838.t1 MTR_3g115430 50.633 79 35 3 141 218 1 76 2.37e-18 78.6
MS.gene046838.t1 MTR_1g066830 31.925 213 122 7 7 209 126 325 4.02e-18 82.8
MS.gene046838.t1 MTR_1g085120 37.363 182 93 8 7 178 298 468 5.41e-18 82.8
MS.gene046838.t1 MTR_7g083740 29.630 216 128 5 30 237 135 334 5.50e-18 82.4
MS.gene046838.t1 MTR_5g045510 29.796 245 114 8 7 233 128 332 1.22e-17 81.6
MS.gene046838.t1 MTR_6g040270 28.017 232 143 8 8 234 127 339 1.36e-17 81.3
MS.gene046838.t1 MTR_2g005990 31.222 221 115 5 7 210 137 337 1.65e-17 81.3
MS.gene046838.t1 MTR_7g055943 33.173 208 118 7 7 207 159 352 2.31e-17 80.9
MS.gene046838.t1 MTR_1089s0010 30.374 214 127 7 11 222 130 323 3.01e-17 80.5
MS.gene046838.t1 MTR_5g063950 31.068 206 122 6 10 207 106 299 3.22e-17 80.1
MS.gene046838.t1 MTR_5g073340 30.357 224 134 6 3 215 97 309 3.74e-17 79.3
MS.gene046838.t1 MTR_1g108800 34.615 208 111 6 10 209 92 282 4.54e-17 79.7
MS.gene046838.t1 MTR_7g026500 30.594 219 117 8 6 210 140 337 7.40e-17 79.3
MS.gene046838.t1 MTR_6g022360 33.981 206 116 8 12 209 154 347 9.02e-17 79.3
MS.gene046838.t1 MTR_5g039450 28.910 211 131 6 36 237 132 332 1.16e-16 78.6
MS.gene046838.t1 MTR_7g056020 30.556 216 124 7 12 218 124 322 1.37e-16 79.0
MS.gene046838.t1 MTR_4g098590 31.696 224 125 8 8 218 127 335 1.47e-16 78.6
MS.gene046838.t1 MTR_5g031970 27.966 236 139 5 2 237 116 320 1.61e-16 78.2
MS.gene046838.t1 MTR_3g107160 28.910 211 121 7 8 207 134 326 2.24e-16 77.8
MS.gene046838.t1 MTR_3g467400 33.617 235 106 12 5 230 131 324 4.99e-16 76.6
MS.gene046838.t1 MTR_2g007360 31.925 213 111 9 17 209 115 313 5.67e-16 76.6
MS.gene046838.t1 MTR_5g054920 33.136 169 95 5 61 223 7 163 1.23e-15 73.2
MS.gene046838.t1 MTR_6g022520 34.579 214 114 10 8 209 53 252 1.29e-15 75.1
MS.gene046838.t1 MTR_7g034110 43.373 83 41 2 132 214 213 289 2.62e-15 74.7
MS.gene046838.t1 MTR_7g060470 28.821 229 123 10 9 213 126 338 3.54e-15 74.3
MS.gene046838.t1 MTR_4g080610 29.557 203 133 5 21 218 109 306 3.81e-15 74.3
MS.gene046838.t1 MTR_7g007340 31.092 238 131 10 7 236 107 319 2.14e-14 72.0
MS.gene046838.t1 MTR_3g108560 34.392 189 97 8 4 180 126 299 2.18e-14 71.6
MS.gene046838.t1 MTR_7g056447 57.812 64 27 0 5 68 122 185 2.74e-14 71.2
MS.gene046838.t1 MTR_7g007370 28.431 204 110 6 8 197 94 275 6.88e-13 67.8
MS.gene046838.t1 MTR_8g085430 50.769 65 26 2 160 218 213 277 1.07e-12 67.0
MS.gene046838.t1 MTR_6g044572 30.603 232 124 9 7 234 148 346 1.35e-12 67.0
MS.gene046838.t1 MTR_7g075800 24.390 246 133 9 8 215 141 371 1.44e-12 67.4
MS.gene046838.t1 MTR_1g108820 30.928 194 97 7 6 178 121 298 1.90e-12 66.2
MS.gene046838.t1 MTR_2g007090 27.586 203 98 7 36 229 87 249 2.14e-12 65.9
MS.gene046838.t1 MTR_6g044560 30.603 232 124 9 7 234 324 522 2.87e-12 66.2
MS.gene046838.t1 MTR_5g061410 29.310 174 109 5 10 178 103 267 7.67e-12 63.9
MS.gene046838.t1 MTR_3g110010 31.844 179 111 6 3 179 215 384 3.29e-11 63.2
MS.gene046838.t1 MTR_3g113785 38.462 78 41 1 148 218 6 83 9.69e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 43 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGAACGTGCATGCTTAA+AGG 0.211918 7.2:+47426464 MS.gene046838:CDS
GAGAATCAACACATATTGTT+AGG 0.273632 7.2:+47427416 MS.gene046838:CDS
GAAATGAAGTTGTGGATAAT+TGG 0.281873 7.2:+47426402 MS.gene046838:CDS
AGTTGTGTTGAAAGGCATTC+TGG 0.305953 7.2:-47426443 None:intergenic
AATTGCAATTCCTCTAGAAT+TGG 0.310327 7.2:-47425888 None:intergenic
CAACCAGTCACCTGCTTTAC+CGG 0.317716 7.2:+47425935 MS.gene046838:CDS
ACTGCCGTGGGAGGTGGAAT+TGG 0.352210 7.2:+47426221 MS.gene046838:CDS
TCCACCTCCCACGGCAGTTA+TGG 0.383705 7.2:-47426216 None:intergenic
AGTTATGGTTACGAATGTTA+TGG 0.391721 7.2:-47426201 None:intergenic
TAGAGGAATTGCAATTTGAA+TGG 0.398880 7.2:+47425895 MS.gene046838:CDS
AGTGAATGACCTTTCTCAAC+TGG 0.402445 7.2:+47425776 MS.gene046838:CDS
GTAGGACCCTTGTCGTTCTT+CGG 0.412242 7.2:+47425739 MS.gene046838:CDS
TCAAAATCTTAACATTCATC+AGG 0.413201 7.2:+47426276 MS.gene046838:CDS
ATGCTTGCTCTAATCAAATT+CGG 0.421701 7.2:-47425975 None:intergenic
CATTGCATAAAGCTTATATC+AGG 0.430417 7.2:+47425861 MS.gene046838:CDS
AACTCTTCGTCTATGTTATG+TGG 0.437576 7.2:+47425821 MS.gene046838:CDS
CTGCCGTGGGAGGTGGAATT+GGG 0.450494 7.2:+47426222 MS.gene046838:CDS
ACCATAACTGCCGTGGGAGG+TGG 0.471147 7.2:+47426215 MS.gene046838:CDS
AGAATCAACACATATTGTTA+GGG 0.496507 7.2:+47427417 MS.gene046838:CDS
TTTCCGGTAAAGCAGGTGAC+TGG 0.500075 7.2:-47425938 None:intergenic
TTGTTAGGGTTGATAGAATG+AGG 0.507209 7.2:+47427431 MS.gene046838:CDS
ACTCTTCGTCTATGTTATGT+GGG 0.533010 7.2:+47425822 MS.gene046838:CDS
GTCCTACAACCGAAAATACT+AGG 0.533842 7.2:-47425723 None:intergenic
AGGCATTCTGGAGCAACGGT+TGG 0.548864 7.2:-47426431 None:intergenic
AATCTACAACCAGTTGAGAA+AGG 0.558766 7.2:-47425785 None:intergenic
TATGAAATGAGGCAGGGCAT+GGG 0.573127 7.2:+47427388 MS.gene046838:intron
TGAAGTTGTGGATAATTGGA+TGG 0.576927 7.2:+47426406 MS.gene046838:CDS
TCACCCAATTCCACCTCCCA+CGG 0.587094 7.2:-47426225 None:intergenic
AAAGATTCTGTATGTAGACC+TGG 0.595138 7.2:+47426049 MS.gene046838:CDS
TGAGAATGGAAATGAAGTTG+TGG 0.607480 7.2:+47426394 MS.gene046838:CDS
TTCGTAACCATAACTGCCGT+GGG 0.613015 7.2:+47426209 MS.gene046838:CDS
ATTCGTAACCATAACTGCCG+TGG 0.613461 7.2:+47426208 MS.gene046838:CDS
TGAAAGGCATTCTGGAGCAA+CGG 0.622526 7.2:-47426435 None:intergenic
ATCAGGATGTCCAATTCTAG+AGG 0.622946 7.2:+47425878 MS.gene046838:CDS
ACGTTCTGAGTTGTGTTGAA+AGG 0.632406 7.2:-47426451 None:intergenic
GTTTCAAAATCTAATCCACA+TGG 0.642529 7.2:+47426165 MS.gene046838:CDS
TAGACAACCGAAGAACGACA+AGG 0.657796 7.2:-47425746 None:intergenic
GCAATTTGAATGGATATCTG+TGG 0.663945 7.2:+47425905 MS.gene046838:CDS
GGTTAAGAATAAGTTCCATG+TGG 0.665597 7.2:-47426180 None:intergenic
TTGTAAAAGCATGAAATGTG+AGG 0.666005 7.2:+47426487 MS.gene046838:CDS
CTACAACCGAAAATACTAGG+AGG 0.683055 7.2:-47425720 None:intergenic
GTAACCATAACTGCCGTGGG+AGG 0.691300 7.2:+47426212 MS.gene046838:CDS
AGACAACCGAAGAACGACAA+GGG 0.706618 7.2:-47425745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGTCAATAAATAA+AGG - chr7.2:47427146-47427165 None:intergenic 10.0%
!! TAAATGTTTAAAAGAAATTA+GGG + chr7.2:47426081-47426100 MS.gene046838:intron 10.0%
!! TTAAATGTTTAAAAGAAATT+AGG + chr7.2:47426080-47426099 MS.gene046838:intron 10.0%
!! AAATATGTAAAAAATTGTTG+AGG - chr7.2:47426335-47426354 None:intergenic 15.0%
!! AGTATCAATGAAAATTATTT+AGG + chr7.2:47427024-47427043 MS.gene046838:intron 15.0%
!! ATAAGAAAGATTATCTAATT+TGG - chr7.2:47427336-47427355 None:intergenic 15.0%
!! AAACATTTAATATTCTTACC+AGG - chr7.2:47426070-47426089 None:intergenic 20.0%
!! ATACTACATATTAAAACTAG+TGG - chr7.2:47427009-47427028 None:intergenic 20.0%
!! GTACTTAGTATTTATATCTA+TGG - chr7.2:47426582-47426601 None:intergenic 20.0%
!! TAACAAAACTATTTCAATTG+TGG + chr7.2:47426362-47426381 MS.gene046838:intron 20.0%
!! TACTACATATTAAAACTAGT+GGG - chr7.2:47427008-47427027 None:intergenic 20.0%
!! TTTCCTCAATAATGTAATAA+AGG - chr7.2:47427060-47427079 None:intergenic 20.0%
!!! AATGTTAAGATTTTGAAGTT+TGG - chr7.2:47426272-47426291 None:intergenic 20.0%
!!! ATGTTAAGATTTTGAAGTTT+GGG - chr7.2:47426271-47426290 None:intergenic 20.0%
!!! TAAGATTTAATGGTTTTCAA+AGG + chr7.2:47426738-47426757 MS.gene046838:intron 20.0%
!!! TATTAGCTTTCATGTATTAA+AGG + chr7.2:47426809-47426828 MS.gene046838:intron 20.0%
! AAGCTAATTTCGTTATCATT+TGG - chr7.2:47426604-47426623 None:intergenic 25.0%
! AGAATCAACACATATTGTTA+GGG + chr7.2:47427417-47427436 MS.gene046838:CDS 25.0%
! ATCATATCTTATCTCATTGA+TGG + chr7.2:47426854-47426873 MS.gene046838:intron 25.0%
! CAATGAGATAAGATATGATT+CGG - chr7.2:47426853-47426872 None:intergenic 25.0%
! TATGCAATGCTAAGATTTAA+TGG + chr7.2:47426728-47426747 MS.gene046838:intron 25.0%
! TCAAAATCTTAACATTCATC+AGG + chr7.2:47426276-47426295 MS.gene046838:CDS 25.0%
!! AATTTACCTCCTAGTATTTT+CGG + chr7.2:47425714-47425733 MS.gene046838:CDS 25.0%
AAACTATTTCAATTGTGGAC+AGG + chr7.2:47426367-47426386 MS.gene046838:intron 30.0%
ACAACATGTAAACTCGTATT+TGG + chr7.2:47426641-47426660 MS.gene046838:intron 30.0%
AGTTATGGTTACGAATGTTA+TGG - chr7.2:47426204-47426223 None:intergenic 30.0%
ATGCTTGCTCTAATCAAATT+CGG - chr7.2:47425978-47425997 None:intergenic 30.0%
CATTGCATAAAGCTTATATC+AGG + chr7.2:47425861-47425880 MS.gene046838:CDS 30.0%
GAAATGAAGTTGTGGATAAT+TGG + chr7.2:47426402-47426421 MS.gene046838:CDS 30.0%
GAGAATCAACACATATTGTT+AGG + chr7.2:47427416-47427435 MS.gene046838:CDS 30.0%
GCTCCTTTATTACATTATTG+AGG + chr7.2:47427054-47427073 MS.gene046838:intron 30.0%
GTTTCAAAATCTAATCCACA+TGG + chr7.2:47426165-47426184 MS.gene046838:CDS 30.0%
TAGAGGAATTGCAATTTGAA+TGG + chr7.2:47425895-47425914 MS.gene046838:CDS 30.0%
TGCTATAGTAATTGGAATCA+TGG + chr7.2:47426954-47426973 MS.gene046838:intron 30.0%
! AACTTTTGTATTTCACTGCA+GGG + chr7.2:47426118-47426137 MS.gene046838:intron 30.0%
! AGACGAAGAGTTTTTAATAG+AGG - chr7.2:47425813-47425832 None:intergenic 30.0%
! ATTCTAAGAGCTAATGATGA+TGG - chr7.2:47426895-47426914 None:intergenic 30.0%
! GACGAAGAGTTTTTAATAGA+GGG - chr7.2:47425812-47425831 None:intergenic 30.0%
! TAACTTTTGTATTTCACTGC+AGG + chr7.2:47426117-47426136 MS.gene046838:intron 30.0%
! TTCTGTTTTCTTTGCTTTGT+CGG + chr7.2:47426024-47426043 MS.gene046838:CDS 30.0%
! TTGTAAAAGCATGAAATGTG+AGG + chr7.2:47426487-47426506 MS.gene046838:CDS 30.0%
!! AATTGCAATTCCTCTAGAAT+TGG - chr7.2:47425891-47425910 None:intergenic 30.0%
!! GTTTCACTTGCTATAGTAAT+TGG + chr7.2:47426946-47426965 MS.gene046838:intron 30.0%
!! TAAGATATGATTCGGTTGAA+AGG - chr7.2:47426845-47426864 None:intergenic 30.0%
!!! GGATTAGATTTTGAAACACA+GGG - chr7.2:47426162-47426181 None:intergenic 30.0%
!!! GGTAAGCATTGAAAATTTTC+CGG - chr7.2:47425957-47425976 None:intergenic 30.0%
!!! TGGATTAGATTTTGAAACAC+AGG - chr7.2:47426163-47426182 None:intergenic 30.0%
AAAGATTCTGTATGTAGACC+TGG + chr7.2:47426049-47426068 MS.gene046838:CDS 35.0%
AACTCTTCGTCTATGTTATG+TGG + chr7.2:47425821-47425840 MS.gene046838:CDS 35.0%
AATCTACAACCAGTTGAGAA+AGG - chr7.2:47425788-47425807 None:intergenic 35.0%
ACAGAGTCAAAATGAAACAG+AGG - chr7.2:47426769-47426788 None:intergenic 35.0%
ACTCTTCGTCTATGTTATGT+GGG + chr7.2:47425822-47425841 MS.gene046838:CDS 35.0%
AGATGCACTCTTAATTGTCA+TGG - chr7.2:47426558-47426577 None:intergenic 35.0%
ATCTCATTGTACAACTACCA+TGG + chr7.2:47427358-47427377 MS.gene046838:intron 35.0%
ATGGCCTATGATATGAAATG+AGG + chr7.2:47427377-47427396 MS.gene046838:intron 35.0%
CAACATTACTGCCATAACAT+TGG - chr7.2:47427223-47427242 None:intergenic 35.0%
CTATGATATGAAATGAGGCA+GGG + chr7.2:47427382-47427401 MS.gene046838:intron 35.0%
GCAATTTGAATGGATATCTG+TGG + chr7.2:47425905-47425924 MS.gene046838:CDS 35.0%
GGTTAAGAATAAGTTCCATG+TGG - chr7.2:47426183-47426202 None:intergenic 35.0%
TACGAGTTTACATGTTGTTG+AGG - chr7.2:47426639-47426658 None:intergenic 35.0%
TCATTTCATATCATAGGCCA+TGG - chr7.2:47427378-47427397 None:intergenic 35.0%
TGAAGTTGTGGATAATTGGA+TGG + chr7.2:47426406-47426425 MS.gene046838:CDS 35.0%
TGAGAATGGAAATGAAGTTG+TGG + chr7.2:47426394-47426413 MS.gene046838:CDS 35.0%
! TCTGTTTTCTTTGCTTTGTC+GGG + chr7.2:47426025-47426044 MS.gene046838:CDS 35.0%
! TGAAAATTTTCCGGTAAAGC+AGG - chr7.2:47425948-47425967 None:intergenic 35.0%
!! TATTTGGTTGATGACAGCTA+GGG + chr7.2:47426657-47426676 MS.gene046838:intron 35.0%
!! TTGTTAGGGTTGATAGAATG+AGG + chr7.2:47427431-47427450 MS.gene046838:CDS 35.0%
!!! GATTTTGAAACACAGGGAAA+TGG - chr7.2:47426156-47426175 None:intergenic 35.0%
AGTGAATGACCTTTCTCAAC+TGG + chr7.2:47425776-47425795 MS.gene046838:CDS 40.0%
ATCAGGATGTCCAATTCTAG+AGG + chr7.2:47425878-47425897 MS.gene046838:CDS 40.0%
CCTATGATATGAAATGAGGC+AGG + chr7.2:47427381-47427400 MS.gene046838:intron 40.0%
CCTGCCTCATTTCATATCAT+AGG - chr7.2:47427384-47427403 None:intergenic 40.0%
CTACAACCGAAAATACTAGG+AGG - chr7.2:47425723-47425742 None:intergenic 40.0%
GTAATTGGAATCATGGCCTA+CGG + chr7.2:47426961-47426980 MS.gene046838:intron 40.0%
GTCCTACAACCGAAAATACT+AGG - chr7.2:47425726-47425745 None:intergenic 40.0%
TCAGTGCTATGCCAATGTTA+TGG + chr7.2:47427209-47427228 MS.gene046838:intron 40.0%
! ACGTTCTGAGTTGTGTTGAA+AGG - chr7.2:47426454-47426473 None:intergenic 40.0%
! CTCCTAGTATTTTCGGTTGT+AGG + chr7.2:47425721-47425740 MS.gene046838:CDS 40.0%
! GAAATTAGCTTCGTCGACAA+GGG + chr7.2:47426613-47426632 MS.gene046838:intron 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG - chr7.2:47426446-47426465 None:intergenic 40.0%
!! GTATTTGGTTGATGACAGCT+AGG + chr7.2:47426656-47426675 MS.gene046838:intron 40.0%
!! TGTGGACAGGATTTTGAGAA+TGG + chr7.2:47426380-47426399 MS.gene046838:intron 40.0%
AATCATGGCCTACGGCAATT+GGG + chr7.2:47426969-47426988 MS.gene046838:intron 45.0%
AGACAACCGAAGAACGACAA+GGG - chr7.2:47425748-47425767 None:intergenic 45.0%
ATATGAAATGAGGCAGGGCA+TGG + chr7.2:47427387-47427406 MS.gene046838:intron 45.0%
ATTCGTAACCATAACTGCCG+TGG + chr7.2:47426208-47426227 MS.gene046838:CDS 45.0%
CTCAGAACGTGCATGCTTAA+AGG + chr7.2:47426464-47426483 MS.gene046838:CDS 45.0%
TAGACAACCGAAGAACGACA+AGG - chr7.2:47425749-47425768 None:intergenic 45.0%
TATGAAATGAGGCAGGGCAT+GGG + chr7.2:47427388-47427407 MS.gene046838:intron 45.0%
TTCGTAACCATAACTGCCGT+GGG + chr7.2:47426209-47426228 MS.gene046838:CDS 45.0%
! CGAAATTAGCTTCGTCGACA+AGG + chr7.2:47426612-47426631 MS.gene046838:intron 45.0%
!! TGAAAGGCATTCTGGAGCAA+CGG - chr7.2:47426438-47426457 None:intergenic 45.0%
AACAGAGTCCCAATTGCCGT+AGG - chr7.2:47426980-47426999 None:intergenic 50.0%
CAACCAGTCACCTGCTTTAC+CGG + chr7.2:47425935-47425954 MS.gene046838:CDS 50.0%
GAATCATGGCCTACGGCAAT+TGG + chr7.2:47426968-47426987 MS.gene046838:intron 50.0%
GTAGGACCCTTGTCGTTCTT+CGG + chr7.2:47425739-47425758 MS.gene046838:CDS 50.0%
TTTCCGGTAAAGCAGGTGAC+TGG - chr7.2:47425941-47425960 None:intergenic 50.0%
GTAACCATAACTGCCGTGGG+AGG + chr7.2:47426212-47426231 MS.gene046838:CDS 55.0%
TCACCCAATTCCACCTCCCA+CGG - chr7.2:47426228-47426247 None:intergenic 55.0%
!! AGGCATTCTGGAGCAACGGT+TGG - chr7.2:47426434-47426453 None:intergenic 55.0%
ACCATAACTGCCGTGGGAGG+TGG + chr7.2:47426215-47426234 MS.gene046838:CDS 60.0%
ACTGCCGTGGGAGGTGGAAT+TGG + chr7.2:47426221-47426240 MS.gene046838:CDS 60.0%
CTGCCGTGGGAGGTGGAATT+GGG + chr7.2:47426222-47426241 MS.gene046838:CDS 60.0%
TCCACCTCCCACGGCAGTTA+TGG - chr7.2:47426219-47426238 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 47425696 47427495 47425696 ID=MS.gene046838
chr7.2 mRNA 47425696 47427495 47425696 ID=MS.gene046838.t1;Parent=MS.gene046838
chr7.2 exon 47425696 47426070 47425696 ID=MS.gene046838.t1.exon1;Parent=MS.gene046838.t1
chr7.2 CDS 47425696 47426070 47425696 ID=cds.MS.gene046838.t1;Parent=MS.gene046838.t1
chr7.2 exon 47426139 47426297 47426139 ID=MS.gene046838.t1.exon2;Parent=MS.gene046838.t1
chr7.2 CDS 47426139 47426297 47426139 ID=cds.MS.gene046838.t1;Parent=MS.gene046838.t1
chr7.2 exon 47426389 47426508 47426389 ID=MS.gene046838.t1.exon3;Parent=MS.gene046838.t1
chr7.2 CDS 47426389 47426508 47426389 ID=cds.MS.gene046838.t1;Parent=MS.gene046838.t1
chr7.2 exon 47427403 47427495 47427403 ID=MS.gene046838.t1.exon4;Parent=MS.gene046838.t1
chr7.2 CDS 47427403 47427495 47427403 ID=cds.MS.gene046838.t1;Parent=MS.gene046838.t1
Gene Sequence

>MS.gene046838

ATGCATTTCACTAGAGTCAATTTACCTCCTAGTATTTTCGGTTGTAGGACCCTTGTCGTTCTTCGGTTGTCTAAGTTAAAAGTGAATGACCTTTCTCAACTGGTTGTAGATTTCCCTCTATTAAAAACTCTTCGTCTATGTTATGTGGGATTCGAATGTCGTGAACATTGCATAAAGCTTATATCAGGATGTCCAATTCTAGAGGAATTGCAATTTGAATGGATATCTGTGGCGAATGACAACCAGTCACCTGCTTTACCGGAAAATTTTCAATGCTTACCGAATTTGATTAGAGCAAGCATTTCAGACTTGTCTTCTACAGAAATTGTTCTGTTTTCTTTGCTTTGTCGGGCAAAGATTCTGTATGTAGACCTGGTAAGAATATTAAATGTTTAAAAGAAATTAGGGTTTATTTCATTTCTAACTTTTGTATTTCACTGCAGGGCAATTGTTACAGCCATTTCCCTGTGTTTCAAAATCTAATCCACATGGAACTTATTCTTAACCATAACATTCGTAACCATAACTGCCGTGGGAGGTGGAATTGGGTGATAGAAGTGTTGAGACGTTGTCCCAAACTTCAAAATCTTAACATTCATCAGGTTTTGTTCTTGTCTAAGATTTTCTTTTATCTTACCTCAACAATTTTTTACATATTTTTTTTTATAACAAAACTATTTCAATTGTGGACAGGATTTTGAGAATGGAAATGAAGTTGTGGATAATTGGATGGATCCAACCGTTGCTCCAGAATGCCTTTCAACACAACTCAGAACGTGCATGCTTAAAGGTTGTAAAAGCATGAAATGTGAGGTTCAATTTGCAAACTATATTATGCAGAATGCGAAAGTATTGAACACCATGACAATTAAGAGTGCATCTTCCATAGATATAAATACTAAGTACCAAATGATAACGAAATTAGCTTCGTCGACAAGGGCCTCAACAACATGTAAACTCGTATTTGGTTGATGACAGCTAGGGCATAGCTGCATTAGTTCTTATGTGTGCTTTTTGTATTAGATTCTAACATATGCAATGCTAAGATTTAATGGTTTTCAAAGGCATGACCTCTGTTTCATTTTGACTCTGTCATTTAGATTTTCAAATATGTATTAGCTTTCATGTATTAAAGGAATGTCAGATCCTTTCAACCGAATCATATCTTATCTCATTGATGGTTGTTTACATCTACACCATCATCATTAGCTCTTAGAATTTAATCACTATTTGCTTCTCTTGAATTCGATGTTTCACTTGCTATAGTAATTGGAATCATGGCCTACGGCAATTGGGACTCTGTTTTTTTCCCACTAGTTTTAATATGTAGTATCAATGAAAATTATTTAGGTTGCTAAGCTCCTTTATTACATTATTGAGGAAAAATAATGAAATATGAAGATGAATGAAATATTTTTTTACTCAAATACTTTACTCTCATATATAACCTTTATTTATTGACAATTTTTTAATAAATTATGTGTTGTTGAGCTTTGTGTAATTGAGCTTTTCGTCAGTGCTATGCCAATGTTATGGCAGTAATGTTGTTGCGTTTCATGTATATTTTTTAGTTACTAGAGATATGTTTGAATTAGTTCTTGTTTTTTCTCTCAGATGCTATTTGTTTACGTAATTAACCAAATTAGATAATCTTTCTTATCAATCTCATTGTACAACTACCATGGCCTATGATATGAAATGAGGCAGGGCATGGGAAATAGAGAATCAACACATATTGTTAGGGTTGATAGAATGAGGAATATTCAGTTGCACGATAATAGAATGCCTATACGACAGTGA
Protein sequence

>MS.gene046838.t1

MHFTRVNLPPSIFGCRTLVVLRLSKLKVNDLSQLVVDFPLLKTLRLCYVGFECREHCIKLISGCPILEELQFEWISVANDNQSPALPENFQCLPNLIRASISDLSSTEIVLFSLLCRAKILYVDLGNCYSHFPVFQNLIHMELILNHNIRNHNCRGRWNWVIEVLRRCPKLQNLNIHQDFENGNEVVDNWMDPTVAPECLSTQLRTCMLKGCKSMKCEGMGNRESTHIVRVDRMRNIQLHDNRMPIRQ