AlfalfaGEDB | MS.gene39749

M. sativa cultivar XinJiangDaYe / MS.gene39749

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39749.t1	XP_013448651.1	67.9	265	37	1	1	217	125	389	1.30E-89	339.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39749.t1	Q9FM94	52.5	61	28	1	8	68	119	178	2.6e-06	53.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39749.t1	A0A072U0K8	67.9	265	37	1	1	217	125	389	9.2e-90	339.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene39749	MS.gene63104	PPI
MS.gene39749	MS.gene072885	PPI
MS.gene39749	MS.gene34733	PPI
MS.gene39749	MS.gene006723	PPI
MS.gene39749	MS.gene54960	PPI
MS.gene39749	MS.gene49011	PPI
MS.gene39749	MS.gene028696	PPI
MS.gene39749	MS.gene25449	PPI
MS.gene39749	MS.gene25296	PPI
MS.gene39749	MS.gene050947	PPI
MS.gene39749	MS.gene25297	PPI
MS.gene055883	MS.gene39749	PPI
MS.gene072547	MS.gene39749	PPI
MS.gene39749	MS.gene25451	PPI
MS.gene39749	MS.gene72962	PPI
MS.gene39749	MS.gene09370	PPI
MS.gene39749	MS.gene03749	PPI
MS.gene39749	MS.gene006725	PPI
MS.gene39749	MS.gene94457	PPI
MS.gene39749	MS.gene069762	PPI
MS.gene34738	MS.gene39749	PPI
MS.gene39749	MS.gene022915	PPI
MS.gene39749	MS.gene72952	PPI
MS.gene39749	MS.gene045439	PPI
MS.gene39749	MS.gene36066	PPI
MS.gene39749	MS.gene51795	PPI
MS.gene39749	MS.gene63256	PPI
MS.gene25411	MS.gene39749	PPI
MS.gene39749	MS.gene98323	PPI
MS.gene39749	MS.gene72957	PPI
MS.gene39749	MS.gene050744	PPI
MS.gene39749	MS.gene032295	PPI
MS.gene39749	MS.gene055882	PPI
MS.gene39749	MS.gene07664	PPI
MS.gene39749	MS.gene89076	PPI
MS.gene39749	MS.gene022905	PPI
MS.gene39749	MS.gene074346	PPI
MS.gene39749	MS.gene060769	PPI
MS.gene39749	MS.gene29873	PPI
MS.gene022916	MS.gene39749	PPI
MS.gene39749	MS.gene007875	PPI
MS.gene32305	MS.gene39749	PPI
MS.gene39749	MS.gene39747	PPI
MS.gene39749	MS.gene022919	PPI
MS.gene39749	MS.gene72956	PPI
MS.gene055880	MS.gene39749	PPI
MS.gene39749	MS.gene09363	PPI
MS.gene39749	MS.gene03753	PPI
MS.gene39749	MS.gene003455	PPI
MS.gene39749	MS.gene61631	PPI
MS.gene39749	MS.gene63212	PPI
MS.gene39749	MS.gene64989	PPI
MS.gene39749	MS.gene053514	PPI
MS.gene39749	MS.gene72961	PPI
MS.gene25410	MS.gene39749	PPI
MS.gene39749	MS.gene072231	PPI
MS.gene39749	MS.gene39753	PPI
MS.gene63113	MS.gene39749	PPI
MS.gene34707	MS.gene39749	PPI
MS.gene39749	MS.gene002112	PPI
MS.gene39749	MS.gene047136	PPI
MS.gene49017	MS.gene39749	PPI
MS.gene32641	MS.gene39749	PPI
MS.gene39749	MS.gene47783	PPI
MS.gene39749	MS.gene63105	PPI
MS.gene39749	MS.gene006728	PPI
MS.gene39749	MS.gene91884	PPI
MS.gene39749	MS.gene49013	PPI
MS.gene39749	MS.gene36752	PPI
MS.gene39749	MS.gene72963	PPI
MS.gene39749	MS.gene36743	PPI
MS.gene39749	MS.gene065373	PPI
MS.gene39749	MS.gene63259	PPI
MS.gene39749	MS.gene98598	PPI
MS.gene39749	MS.gene031573	PPI
MS.gene39749	MS.gene072000	PPI
MS.gene73831	MS.gene39749	PPI
MS.gene39749	MS.gene60521	PPI
MS.gene09364	MS.gene39749	PPI
MS.gene63213	MS.gene39749	PPI
MS.gene09360	MS.gene39749	PPI
MS.gene39749	MS.gene07669	PPI
MS.gene39749	MS.gene89961	PPI
MS.gene34824	MS.gene39749	PPI
MS.gene39749	MS.gene033695	PPI
MS.gene39749	MS.gene045451	PPI
MS.gene39749	MS.gene06476	PPI
MS.gene64993	MS.gene39749	PPI
MS.gene39749	MS.gene63218	PPI
MS.gene39749	MS.gene91201	PPI
MS.gene39749	MS.gene014841	PPI
MS.gene39749	MS.gene07660	PPI
MS.gene72959	MS.gene39749	PPI
MS.gene39749	MS.gene34802	PPI
MS.gene39749	MS.gene006730	PPI
MS.gene39749	MS.gene056517	PPI
MS.gene96120	MS.gene39749	PPI
MS.gene39749	MS.gene002108	PPI
MS.gene39749	MS.gene041325	PPI
MS.gene39749	MS.gene95902	PPI
MS.gene39749	MS.gene031575	PPI
MS.gene34731	MS.gene39749	PPI
MS.gene39749	MS.gene54959	PPI
MS.gene39749	MS.gene047839	PPI
MS.gene39749	MS.gene43257	PPI
MS.gene39749	MS.gene34706	PPI
MS.gene39749	MS.gene060771	PPI
MS.gene047137	MS.gene39749	PPI
MS.gene39749	MS.gene26069	PPI
MS.gene39749	MS.gene073176	PPI
MS.gene39749	MS.gene66626	PPI
MS.gene39749	MS.gene033696	PPI
MS.gene39749	MS.gene09371	PPI
MS.gene065516	MS.gene39749	PPI
MS.gene34704	MS.gene39749	PPI
MS.gene39749	MS.gene21682	PPI
MS.gene39749	MS.gene053313	PPI
MS.gene39749	MS.gene07665	PPI
MS.gene39749	MS.gene34766	PPI
MS.gene39749	MS.gene63185	PPI
MS.gene39749	MS.gene95710	PPI
MS.gene39749	MS.gene34216	PPI
MS.gene39749	MS.gene63214	PPI
MS.gene39749	MS.gene07668	PPI
MS.gene39749	MS.gene09367	PPI
MS.gene39749	MS.gene045449	PPI
MS.gene39749	MS.gene055754	PPI
MS.gene39749	MS.gene63095	PPI
MS.gene39749	MS.gene046839	PPI
MS.gene39749	MS.gene022921	PPI
MS.gene39749	MS.gene64988	PPI
MS.gene041326	MS.gene39749	PPI
MS.gene39749	MS.gene07659	PPI
MS.gene39749	MS.gene49012	PPI
MS.gene39749	MS.gene038427	PPI
MS.gene39749	MS.gene47771	PPI
MS.gene39749	MS.gene071257	PPI
MS.gene39745	MS.gene39749	PPI
MS.gene39749	MS.gene035630	PPI
MS.gene39749	MS.gene36067	PPI
MS.gene39749	MS.gene031577	PPI
MS.gene39749	MS.gene36809	PPI
MS.gene39749	MS.gene045437	PPI
MS.gene39749	MS.gene069763	PPI
MS.gene39749	MS.gene48656	PPI
MS.gene39749	MS.gene09992	PPI
MS.gene39749	MS.gene47775	PPI
MS.gene39749	MS.gene005794	PPI
MS.gene39749	MS.gene93027	PPI
MS.gene39749	MS.gene053311	PPI
MS.gene39749	MS.gene25299	PPI
MS.gene39749	MS.gene64984	PPI
MS.gene30045	MS.gene39749	PPI
MS.gene39749	MS.gene07658	PPI
MS.gene39749	MS.gene34215	PPI
MS.gene03750	MS.gene39749	PPI
MS.gene39749	MS.gene47782	PPI
MS.gene39749	MS.gene022917	PPI
MS.gene39749	MS.gene88183	PPI
MS.gene39749	MS.gene36807	PPI
MS.gene39749	MS.gene32300	PPI
MS.gene39749	MS.gene25448	PPI
MS.gene63210	MS.gene39749	PPI
MS.gene39749	MS.gene03748	PPI
MS.gene39749	MS.gene006736	PPI
MS.gene39749	MS.gene36810	PPI
MS.gene39749	MS.gene97355	PPI
MS.gene39749	MS.gene25344	PPI
MS.gene39749	MS.gene34739	PPI
MS.gene39749	MS.gene54958	PPI
MS.gene045441	MS.gene39749	PPI
MS.gene39749	MS.gene34801	PPI
MS.gene39749	MS.gene007876	PPI
MS.gene39749	MS.gene39752	PPI
MS.gene39749	MS.gene03755	PPI
MS.gene39749	MS.gene021295	PPI
MS.gene39749	MS.gene34737	PPI
MS.gene39749	MS.gene91886	PPI
MS.gene006692	MS.gene39749	PPI
MS.gene39749	MS.gene053312	PPI
MS.gene39749	MS.gene78164	PPI
MS.gene39749	MS.gene25347	PPI
MS.gene39749	MS.gene25412	PPI
MS.gene39749	MS.gene024263	PPI
MS.gene39749	MS.gene03757	PPI
MS.gene39749	MS.gene25348	PPI
MS.gene39749	MS.gene39754	PPI
MS.gene39749	MS.gene36065	PPI
MS.gene39749	MS.gene07678	PPI
MS.gene39749	MS.gene47772	PPI
MS.gene36764	MS.gene39749	PPI
MS.gene39749	MS.gene006727	PPI
MS.gene39749	MS.gene68082	PPI
MS.gene39749	MS.gene84247	PPI
MS.gene39749	MS.gene031570	PPI
MS.gene39749	MS.gene72958	PPI
MS.gene065234	MS.gene39749	PPI
MS.gene39749	MS.gene47777	PPI
MS.gene39749	MS.gene63094	PPI
MS.gene39749	MS.gene03760	PPI
MS.gene39749	MS.gene32638	PPI
MS.gene39749	MS.gene03756	PPI
MS.gene47780	MS.gene39749	PPI
MS.gene34753	MS.gene39749	PPI
MS.gene39749	MS.gene017193	PPI
MS.gene39749	MS.gene014842	PPI
MS.gene39749	MS.gene63223	PPI
MS.gene39749	MS.gene25386	PPI
MS.gene39749	MS.gene63221	PPI
MS.gene39749	MS.gene25450	PPI
MS.gene39749	MS.gene49015	PPI
MS.gene39749	MS.gene63257	PPI
MS.gene022909	MS.gene39749	PPI
MS.gene39749	MS.gene36942	PPI
MS.gene39749	MS.gene72955	PPI
MS.gene39749	MS.gene63111	PPI
MS.gene36804	MS.gene39749	PPI
MS.gene39749	MS.gene91885	PPI
MS.gene39749	MS.gene056133	PPI
MS.gene39749	MS.gene34804	PPI
MS.gene39749	MS.gene022920	PPI
MS.gene39749	MS.gene046838	PPI
MS.gene39749	MS.gene055877	PPI
MS.gene39749	MS.gene25352	PPI
MS.gene03752	MS.gene39749	PPI
MS.gene39749	MS.gene63260	PPI
MS.gene78146	MS.gene39749	PPI
MS.gene39749	MS.gene07667	PPI
MS.gene39749	MS.gene007794	PPI
MS.gene39749	MS.gene01653	PPI
MS.gene39749	MS.gene69561	PPI
MS.gene39749	MS.gene94458	PPI
MS.gene39749	MS.gene99983	PPI
MS.gene39749	MS.gene045448	PPI
MS.gene39749	MS.gene72960	PPI
MS.gene39749	MS.gene03758	PPI
MS.gene39749	MS.gene39744	PPI
MS.gene39749	MS.gene07674	PPI
MS.gene39749	MS.gene041326	PPI
MS.gene49513	MS.gene39749	PPI
MS.gene39749	MS.gene34825	PPI
MS.gene39749	MS.gene89957	PPI
MS.gene39749	MS.gene032853	PPI
MS.gene69850	MS.gene39749	PPI
MS.gene39749	MS.gene003456	PPI
MS.gene39749	MS.gene07666	PPI
MS.gene39749	MS.gene062537	PPI
MS.gene39749	MS.gene99980	PPI
MS.gene39749	MS.gene36943	PPI
MS.gene39749	MS.gene032379	PPI
MS.gene39749	MS.gene25298	PPI
MS.gene39749	MS.gene03759	PPI
MS.gene39749	MS.gene014840	PPI
MS.gene39749	MS.gene043122	PPI
MS.gene39749	MS.gene25353	PPI
MS.gene39749	MS.gene48654	PPI
MS.gene63217	MS.gene39749	PPI
MS.gene39749	MS.gene52136	PPI
MS.gene39749	MS.gene89956	PPI
MS.gene96357	MS.gene39749	PPI
MS.gene26058	MS.gene39749	PPI
MS.gene39749	MS.gene067702	PPI
MS.gene68082	MS.gene39749	PPI
MS.gene39749	MS.gene98324	PPI
MS.gene32643	MS.gene39749	PPI
MS.gene39749	MS.gene34740	PPI
MS.gene39749	MS.gene36763	PPI
MS.gene39749	MS.gene032861	PPI
MS.gene39749	MS.gene34735	PPI
MS.gene39749	MS.gene061286	PPI
MS.gene39749	MS.gene92095	PPI
MS.gene86337	MS.gene39749	PPI
MS.gene39749	MS.gene89955	PPI
MS.gene63177	MS.gene39749	PPI
MS.gene39749	MS.gene84248	PPI
MS.gene39749	MS.gene25415	PPI
MS.gene39749	MS.gene024262	PPI
MS.gene39749	MS.gene022912	PPI
MS.gene39749	MS.gene045452	PPI
MS.gene39749	MS.gene49018	PPI
MS.gene39749	MS.gene032862	PPI
MS.gene39749	MS.gene059405	PPI
MS.gene39749	MS.gene34703	PPI
MS.gene39749	MS.gene94460	PPI
MS.gene39749	MS.gene045446	PPI
MS.gene39749	MS.gene09368	PPI
MS.gene39749	MS.gene041323	PPI
MS.gene39749	MS.gene062282	PPI
MS.gene39749	MS.gene062526	PPI
MS.gene39749	MS.gene64992	PPI
MS.gene39749	MS.gene060770	PPI
MS.gene39749	MS.gene072003	PPI
MS.gene39749	MS.gene30067	PPI
MS.gene39749	MS.gene63112	PPI
MS.gene39749	MS.gene69407	PPI
MS.gene39749	MS.gene010866	PPI
MS.gene39749	MS.gene26444	PPI
MS.gene25396	MS.gene39749	PPI
MS.gene39749	MS.gene63224	PPI
MS.gene39749	MS.gene031603	PPI
MS.gene39749	MS.gene34736	PPI
MS.gene39749	MS.gene51793	PPI
MS.gene39749	MS.gene25414	PPI
MS.gene30260	MS.gene39749	PPI
MS.gene39749	MS.gene47781	PPI
MS.gene39749	MS.gene054411	PPI
MS.gene39749	MS.gene031572	PPI
MS.gene39749	MS.gene050239	PPI
MS.gene39749	MS.gene73780	PPI
MS.gene39749	MS.gene043123	PPI
MS.gene39749	MS.gene72954	PPI
MS.gene39749	MS.gene63222	PPI
MS.gene39749	MS.gene34730	PPI
MS.gene39749	MS.gene065374	PPI
MS.gene39749	MS.gene99982	PPI
MS.gene39749	MS.gene25418	PPI
MS.gene39749	MS.gene005795	PPI
MS.gene39749	MS.gene032852	PPI
MS.gene09362	MS.gene39749	PPI
MS.gene39749	MS.gene072244	PPI
MS.gene39749	MS.gene032296	PPI
MS.gene39749	MS.gene033694	PPI
MS.gene39749	MS.gene032860	PPI
MS.gene39749	MS.gene045772	PPI
MS.gene39749	MS.gene045440	PPI
MS.gene39749	MS.gene89963	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39749.t1	MTR_7g056433	67.925	265	37	1	1	217	125	389	9.15e-121	348
MS.gene39749.t1	MTR_7g115270	45.113	266	89	4	6	214	134	399	3.83e-64	204
MS.gene39749.t1	MTR_3g467400	41.564	243	106	6	5	217	131	367	8.44e-45	153
MS.gene39749.t1	MTR_3g036250	38.462	247	111	4	5	214	121	363	1.53e-44	152
MS.gene39749.t1	MTR_7g098510	37.879	264	107	5	6	217	133	391	3.45e-44	152
MS.gene39749.t1	MTR_5g013500	39.200	250	92	5	28	217	116	365	4.74e-43	148
MS.gene39749.t1	MTR_7g098570	37.838	259	104	4	6	212	135	388	2.25e-42	149
MS.gene39749.t1	MTR_7g098480	37.023	262	108	5	6	216	133	388	4.10e-41	145
MS.gene39749.t1	MTR_7g032380	36.522	230	123	7	8	217	130	356	1.20e-34	126
MS.gene39749.t1	MTR_5g008950	31.955	266	120	5	4	217	109	365	2.05e-34	126
MS.gene39749.t1	MTR_7g032370	36.905	252	112	11	7	217	107	352	2.92e-33	122
MS.gene39749.t1	MTR_3g040700	33.600	250	117	7	5	210	159	403	6.97e-33	123
MS.gene39749.t1	MTR_7g034120	35.938	256	104	8	11	217	64	308	2.55e-32	119
MS.gene39749.t1	MTR_1g041245	34.717	265	111	8	8	217	129	386	2.63e-32	120
MS.gene39749.t1	MTR_8g085430	39.394	198	98	6	8	203	137	314	4.71e-31	116
MS.gene39749.t1	MTR_7g056417	52.239	134	57	2	5	131	4	137	1.47e-30	110
MS.gene39749.t1	MTR_7g007080	35.409	257	107	7	8	214	129	376	1.60e-30	116
MS.gene39749.t1	MTR_0543s0010	34.375	256	116	6	8	216	199	449	1.73e-30	117
MS.gene39749.t1	MTR_3g087260	33.460	263	126	4	2	216	195	456	1.99e-30	116
MS.gene39749.t1	MTR_5g012840	37.674	215	121	6	11	217	109	318	1.17e-29	112
MS.gene39749.t1	MTR_3g108560	33.579	271	114	7	4	216	126	388	2.23e-29	113
MS.gene39749.t1	MTR_5g008920	32.824	262	117	8	7	217	128	381	6.31e-29	111
MS.gene39749.t1	MTR_3g023630	32.576	264	110	8	6	217	126	373	6.90e-29	111
MS.gene39749.t1	MTR_3g115430	54.639	97	40	2	121	217	33	125	8.02e-29	105
MS.gene39749.t1	MTR_7g034115	34.601	263	106	9	1	209	125	375	1.35e-27	108
MS.gene39749.t1	MTR_3g082890	31.655	278	121	6	6	217	210	484	2.22e-27	108
MS.gene39749.t1	MTR_7g033915	33.459	266	100	11	2	216	125	364	6.83e-27	105
MS.gene39749.t1	MTR_7g088260	28.731	268	130	7	3	217	203	462	6.96e-27	107
MS.gene39749.t1	MTR_7g022060	34.978	223	128	7	1	217	118	329	7.68e-27	105
MS.gene39749.t1	MTR_0492s0020	33.471	242	109	6	8	202	199	435	9.00e-27	106
MS.gene39749.t1	MTR_3g105060	34.252	254	114	8	6	217	131	373	9.21e-27	105
MS.gene39749.t1	MTR_7g114710	38.197	233	104	9	16	217	141	364	2.67e-26	104
MS.gene39749.t1	MTR_3g109982	30.469	256	116	7	3	204	215	462	2.94e-26	106
MS.gene39749.t1	MTR_7g056430	68.000	75	24	0	137	211	285	359	3.78e-26	105
MS.gene39749.t1	MTR_7g056420	68.000	75	24	0	137	211	285	359	3.83e-26	105
MS.gene39749.t1	MTR_3g108150	30.741	270	125	7	3	216	123	386	5.94e-26	103
MS.gene39749.t1	MTR_1g043170	52.222	90	40	1	128	217	2	88	1.57e-25	95.5
MS.gene39749.t1	MTR_7g021930	34.978	223	128	7	1	217	118	329	2.02e-25	101
MS.gene39749.t1	MTR_7g021970	34.978	223	128	7	1	217	118	329	2.02e-25	101
MS.gene39749.t1	MTR_3g113770	38.824	170	84	6	11	174	179	334	2.17e-25	101
MS.gene39749.t1	MTR_7g056277	34.413	247	116	7	12	216	385	627	8.61e-25	102
MS.gene39749.t1	MTR_2g020180	51.807	83	37	1	135	217	136	215	4.25e-24	95.5
MS.gene39749.t1	MTR_7g081290	49.485	97	44	2	121	217	165	256	5.59e-24	96.3
MS.gene39749.t1	MTR_7g056287	33.603	247	118	7	12	216	129	371	7.60e-24	97.8
MS.gene39749.t1	MTR_7g033990	36.585	246	100	10	11	209	139	375	1.15e-23	97.8
MS.gene39749.t1	MTR_5g045170	29.323	266	136	6	1	214	123	388	2.20e-23	96.7
MS.gene39749.t1	MTR_5g045510	31.020	245	129	6	7	214	128	369	7.18e-23	95.1
MS.gene39749.t1	MTR_5g007410	27.547	265	138	4	5	215	142	406	2.10e-22	94.7
MS.gene39749.t1	MTR_5g063950	28.235	255	134	5	10	215	106	360	6.17e-22	92.4
MS.gene39749.t1	MTR_3g107100	29.588	267	125	7	8	214	132	395	2.89e-21	90.9
MS.gene39749.t1	MTR_6g011460	31.698	265	117	9	8	217	166	421	3.26e-21	90.9
MS.gene39749.t1	MTR_1g108800	31.076	251	124	8	10	214	92	339	5.89e-21	89.4
MS.gene39749.t1	MTR_3g082890	50.617	81	37	1	137	217	364	441	1.58e-20	89.4
MS.gene39749.t1	MTR_5g039490	29.098	244	138	5	1	214	135	373	1.80e-20	88.6
MS.gene39749.t1	MTR_1g107385	30.385	260	123	7	8	214	166	420	2.12e-20	88.6
MS.gene39749.t1	MTR_4g039440	29.670	273	133	8	1	217	143	412	2.53e-20	88.6
MS.gene39749.t1	MTR_7g056020	29.528	254	114	6	12	210	124	367	2.76e-20	89.0
MS.gene39749.t1	MTR_3g071850	26.415	265	141	5	3	213	141	405	5.53e-20	88.2
MS.gene39749.t1	MTR_1g085120	29.658	263	131	7	7	217	211	471	1.06e-19	87.0
MS.gene39749.t1	MTR_1g085120	29.658	263	131	7	7	217	286	546	1.17e-19	87.0
MS.gene39749.t1	MTR_6g045333	28.464	267	135	4	5	216	180	445	2.62e-19	85.9
MS.gene39749.t1	MTR_3g108140	40.909	110	61	1	107	216	42	147	3.24e-19	81.6
MS.gene39749.t1	MTR_0009s0080	29.508	244	113	6	5	192	135	375	5.42e-19	84.7
MS.gene39749.t1	MTR_4g080610	30.400	250	118	7	21	216	109	356	2.88e-18	82.4
MS.gene39749.t1	MTR_6g040270	25.692	253	141	5	8	214	127	378	3.02e-17	79.7
MS.gene39749.t1	MTR_5g065100	28.879	232	131	5	10	216	126	348	1.52e-16	77.8
MS.gene39749.t1	MTR_4g096730	46.341	82	39	2	137	217	12	89	2.33e-16	72.0
MS.gene39749.t1	MTR_5g008910	46.988	83	39	3	136	217	224	302	3.52e-15	73.2
MS.gene39749.t1	MTR_7g026500	27.799	259	135	8	6	216	140	394	3.52e-15	73.9
MS.gene39749.t1	MTR_7g056447	57.812	64	27	0	5	68	122	185	7.43e-15	72.0
MS.gene39749.t1	MTR_5g039470	27.511	229	110	6	6	179	99	326	3.01e-14	70.9
MS.gene39749.t1	MTR_3g095600	29.245	212	122	8	4	207	100	291	1.13e-13	68.9
MS.gene39749.t1	MTR_6g044572	30.328	244	132	10	8	217	149	388	2.37e-13	68.6
MS.gene39749.t1	MTR_7g083740	26.050	238	119	7	30	216	135	366	2.45e-13	68.2
MS.gene39749.t1	MTR_2g007450	37.234	94	53	2	125	217	333	421	3.35e-13	68.2
MS.gene39749.t1	MTR_6g044560	30.328	244	132	10	8	217	325	564	5.07e-13	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39749.t1	AT3G54910	36.170	94	57	2	124	217	283	373	5.63e-11	61.6
MS.gene39749.t1	AT3G54910	36.170	94	57	2	124	217	283	373	5.63e-11	61.6
MS.gene39749.t1	AT3G54910	36.170	94	57	2	124	217	283	373	5.63e-11	61.6
MS.gene39749.t1	AT3G49030	30.047	213	123	11	17	216	215	414	7.97e-11	61.2

Find 34 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAAAACGTGCATGCTTAA+AGG	0.187020	7.1:+45568758	MS.gene39749:CDS
GTGCTTGGTATTTATATCTA+TGG	0.261227	7.1:-45568873	None:intergenic
AGTTGTGTTGAAAGGCATTC+TGG	0.299065	7.1:-45568737	None:intergenic
AATTGCAATTCCTCTAGAAT+TGG	0.310327	7.1:-45568168	None:intergenic
CAACCAGTCACCTGCTTTAC+CGG	0.317716	7.1:+45568215	MS.gene39749:CDS
AAGCTAATTTCGTTATCATT+TGG	0.362113	7.1:-45568895	None:intergenic
AGTGAATGACCTTTCTCAAT+TGG	0.363843	7.1:+45568056	MS.gene39749:CDS
TAGAGGAATTGCAATTTGAA+TGG	0.398880	7.1:+45568175	MS.gene39749:CDS
GAAATGAAGTTGTGGACAAT+TGG	0.399113	7.1:+45568696	MS.gene39749:CDS
GTAGGACCCTTGTCGTTCTT+CGG	0.412242	7.1:+45568019	MS.gene39749:CDS
TTTCGTTATCATTTGGTGCT+TGG	0.417778	7.1:-45568888	None:intergenic
ATGCTTGCTCTAATCAAATT+CGG	0.421701	7.1:-45568255	None:intergenic
CATTGCATAAAGCTTATATC+AGG	0.430417	7.1:+45568141	MS.gene39749:CDS
AACTCTTCGTCTATGTTATG+TGG	0.437576	7.1:+45568101	MS.gene39749:CDS
CATTTCAGACTTGTCTTCTA+CGG	0.443375	7.1:+45568275	MS.gene39749:CDS
CGAAATTAGCTTCGTCGACA+AGG	0.451535	7.1:+45568906	MS.gene39749:CDS
TTTCCGGTAAAGCAGGTGAC+TGG	0.500075	7.1:-45568218	None:intergenic
ACTCTTCGTCTATGTTATGT+GGG	0.533010	7.1:+45568102	MS.gene39749:CDS
AATCTACAACCAATTGAGAA+AGG	0.533584	7.1:-45568065	None:intergenic
GTCCTACAACCGAAAATACT+AGG	0.533842	7.1:-45568003	None:intergenic
TAAGAGTTTACATGTTGTTG+AGG	0.546596	7.1:-45568930	None:intergenic
AGGCATTCTGGAGTGACGGT+TGG	0.557793	7.1:-45568725	None:intergenic
TGAAGTTGTGGACAATTGGA+TGG	0.562351	7.1:+45568700	MS.gene39749:CDS
GAAATTAGCTTCGTCGACAA+GGG	0.564897	7.1:+45568907	MS.gene39749:CDS
AGACGCACTCTTAATTGTCA+TGG	0.592737	7.1:-45568849	None:intergenic
TGAGAATGGAAATGAAGTTG+TGG	0.594414	7.1:+45568688	MS.gene39749:CDS
AAAGATTCTGTATGTAGACC+TGG	0.595138	7.1:+45568329	MS.gene39749:CDS
ATCAGGATGTCCAATTCTAG+AGG	0.622946	7.1:+45568158	MS.gene39749:CDS
TGAAAGGCATTCTGGAGTGA+CGG	0.657007	7.1:-45568729	None:intergenic
TAGACAACCGAAGAACGACA+AGG	0.657796	7.1:-45568026	None:intergenic
GCAATTTGAATGGATATCTG+TGG	0.663945	7.1:+45568185	MS.gene39749:CDS
ATGTAAAAGCATGAAATGTG+AGG	0.666005	7.1:+45568781	MS.gene39749:CDS
CTACAACCGAAAATACTAGG+AGG	0.683055	7.1:-45568000	None:intergenic
AGACAACCGAAGAACGACAA+GGG	0.706618	7.1:-45568025	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAATGTTTAAAAGAAATT+AGG	+	chr7.1:45568375-45568394	MS.gene39749:intron	10.0%
!!	TAAATGTTTAAAAGAAATTA+GGG	+	chr7.1:45568376-45568395	MS.gene39749:intron	10.0%
!!!	AATTTCTTTTAAACATTTAT+TGG	-	chr7.1:45568375-45568394	None:intergenic	10.0%
!!	AAATATGTAAAAAATTGTTG+AGG	-	chr7.1:45568630-45568649	None:intergenic	15.0%
!!	TAACAAAACTATTTCAATTG+TGG	+	chr7.1:45568656-45568675	MS.gene39749:intron	20.0%
!!!	AATGTTAAGATTTTGAAGTT+TGG	-	chr7.1:45568567-45568586	None:intergenic	20.0%
!!!	ATGTTAAGATTTTGAAGTTT+GGG	-	chr7.1:45568566-45568585	None:intergenic	20.0%
!	AAGCTAATTTCGTTATCATT+TGG	-	chr7.1:45568898-45568917	None:intergenic	25.0%
!	AGTCATATAATATTCTTACC+AGG	-	chr7.1:45568350-45568369	None:intergenic	25.0%
!	TCAAAATCTTAACATTCATC+AGG	+	chr7.1:45568571-45568590	MS.gene39749:intron	25.0%
!!	AATTTACCTCCTAGTATTTT+CGG	+	chr7.1:45567994-45568013	MS.gene39749:CDS	25.0%
	AAACTATTTCAATTGTGGAC+AGG	+	chr7.1:45568661-45568680	MS.gene39749:intron	30.0%
	AATCTACAACCAATTGAGAA+AGG	-	chr7.1:45568068-45568087	None:intergenic	30.0%
	AGTTATGGTTACGAATGTTA+TGG	-	chr7.1:45568499-45568518	None:intergenic	30.0%
	ATGCTTGCTCTAATCAAATT+CGG	-	chr7.1:45568258-45568277	None:intergenic	30.0%
	CATTGCATAAAGCTTATATC+AGG	+	chr7.1:45568141-45568160	MS.gene39749:CDS	30.0%
	GTGCTTGGTATTTATATCTA+TGG	-	chr7.1:45568876-45568895	None:intergenic	30.0%
	GTTTCAAAATCTAATCCACA+TGG	+	chr7.1:45568460-45568479	MS.gene39749:intron	30.0%
	TAAGAGTTTACATGTTGTTG+AGG	-	chr7.1:45568933-45568952	None:intergenic	30.0%
	TAGAGGAATTGCAATTTGAA+TGG	+	chr7.1:45568175-45568194	MS.gene39749:CDS	30.0%
!	AACTTTTGTATTTCACTGCA+GGG	+	chr7.1:45568413-45568432	MS.gene39749:intron	30.0%
!	AGACGAAGAGTTTTTAATAG+AGG	-	chr7.1:45568093-45568112	None:intergenic	30.0%
!	ATGTAAAAGCATGAAATGTG+AGG	+	chr7.1:45568781-45568800	MS.gene39749:CDS	30.0%
!	GACGAAGAGTTTTTAATAGA+GGG	-	chr7.1:45568092-45568111	None:intergenic	30.0%
!	TAACTTTTGTATTTCACTGC+AGG	+	chr7.1:45568412-45568431	MS.gene39749:intron	30.0%
!	TTCTGTTTTCTTTGCTTTGT+CGG	+	chr7.1:45568304-45568323	MS.gene39749:CDS	30.0%
!!	AATTGCAATTCCTCTAGAAT+TGG	-	chr7.1:45568171-45568190	None:intergenic	30.0%
!!!	GGATTAGATTTTGAAACACA+GGG	-	chr7.1:45568457-45568476	None:intergenic	30.0%
!!!	GGTAAGCATTGAAAATTTTC+CGG	-	chr7.1:45568237-45568256	None:intergenic	30.0%
!!!	TGGATTAGATTTTGAAACAC+AGG	-	chr7.1:45568458-45568477	None:intergenic	30.0%
	AAAGATTCTGTATGTAGACC+TGG	+	chr7.1:45568329-45568348	MS.gene39749:CDS	35.0%
	AACTCTTCGTCTATGTTATG+TGG	+	chr7.1:45568101-45568120	MS.gene39749:CDS	35.0%
	ACTCTTCGTCTATGTTATGT+GGG	+	chr7.1:45568102-45568121	MS.gene39749:CDS	35.0%
	AGTGAATGACCTTTCTCAAT+TGG	+	chr7.1:45568056-45568075	MS.gene39749:CDS	35.0%
	CATTTCAGACTTGTCTTCTA+CGG	+	chr7.1:45568275-45568294	MS.gene39749:CDS	35.0%
	GAAATGAAGTTGTGGACAAT+TGG	+	chr7.1:45568696-45568715	MS.gene39749:CDS	35.0%
	GCAATTTGAATGGATATCTG+TGG	+	chr7.1:45568185-45568204	MS.gene39749:CDS	35.0%
	TGAGAATGGAAATGAAGTTG+TGG	+	chr7.1:45568688-45568707	MS.gene39749:CDS	35.0%
!	TCTGTTTTCTTTGCTTTGTC+GGG	+	chr7.1:45568305-45568324	MS.gene39749:CDS	35.0%
!	TGAAAATTTTCCGGTAAAGC+AGG	-	chr7.1:45568228-45568247	None:intergenic	35.0%
!!	TTTCGTTATCATTTGGTGCT+TGG	-	chr7.1:45568891-45568910	None:intergenic	35.0%
!!!	ACGTTTTGAGTTGTGTTGAA+AGG	-	chr7.1:45568748-45568767	None:intergenic	35.0%
!!!	GATTTTGAAACACAGGGAAA+TGG	-	chr7.1:45568451-45568470	None:intergenic	35.0%
	AGACGCACTCTTAATTGTCA+TGG	-	chr7.1:45568852-45568871	None:intergenic	40.0%
	ATCAGGATGTCCAATTCTAG+AGG	+	chr7.1:45568158-45568177	MS.gene39749:CDS	40.0%
	CTACAACCGAAAATACTAGG+AGG	-	chr7.1:45568003-45568022	None:intergenic	40.0%
	CTCAAAACGTGCATGCTTAA+AGG	+	chr7.1:45568758-45568777	MS.gene39749:CDS	40.0%
	GGTCAAGAATAAGTTCCATG+TGG	-	chr7.1:45568478-45568497	None:intergenic	40.0%
	GTCCTACAACCGAAAATACT+AGG	-	chr7.1:45568006-45568025	None:intergenic	40.0%
	TGAAGTTGTGGACAATTGGA+TGG	+	chr7.1:45568700-45568719	MS.gene39749:CDS	40.0%
!	CTCCTAGTATTTTCGGTTGT+AGG	+	chr7.1:45568001-45568020	MS.gene39749:CDS	40.0%
!	GAAATTAGCTTCGTCGACAA+GGG	+	chr7.1:45568907-45568926	MS.gene39749:CDS	40.0%
!!	AGTTGTGTTGAAAGGCATTC+TGG	-	chr7.1:45568740-45568759	None:intergenic	40.0%
!!	TGTGGACAGGATTTTGAGAA+TGG	+	chr7.1:45568674-45568693	MS.gene39749:intron	40.0%
	AGACAACCGAAGAACGACAA+GGG	-	chr7.1:45568028-45568047	None:intergenic	45.0%
	ATTCGTAACCATAACTGCCG+TGG	+	chr7.1:45568503-45568522	MS.gene39749:intron	45.0%
	TAGACAACCGAAGAACGACA+AGG	-	chr7.1:45568029-45568048	None:intergenic	45.0%
	TTCGTAACCATAACTGCCGT+GGG	+	chr7.1:45568504-45568523	MS.gene39749:intron	45.0%
!	CGAAATTAGCTTCGTCGACA+AGG	+	chr7.1:45568906-45568925	MS.gene39749:CDS	45.0%
!!	TGAAAGGCATTCTGGAGTGA+CGG	-	chr7.1:45568732-45568751	None:intergenic	45.0%
	CAACCAGTCACCTGCTTTAC+CGG	+	chr7.1:45568215-45568234	MS.gene39749:CDS	50.0%
	GTAGGACCCTTGTCGTTCTT+CGG	+	chr7.1:45568019-45568038	MS.gene39749:CDS	50.0%
	TTTCCGGTAAAGCAGGTGAC+TGG	-	chr7.1:45568221-45568240	None:intergenic	50.0%
	GTAACCATAACTGCCGTGGG+AGG	+	chr7.1:45568507-45568526	MS.gene39749:intron	55.0%
	TCACCCAATTCCACCTCCCA+CGG	-	chr7.1:45568523-45568542	None:intergenic	55.0%
!!	AGGCATTCTGGAGTGACGGT+TGG	-	chr7.1:45568728-45568747	None:intergenic	55.0%
	ACCATAACTGCCGTGGGAGG+TGG	+	chr7.1:45568510-45568529	MS.gene39749:intron	60.0%
	ACTGCCGTGGGAGGTGGAAT+TGG	+	chr7.1:45568516-45568535	MS.gene39749:intron	60.0%
	CTGCCGTGGGAGGTGGAATT+GGG	+	chr7.1:45568517-45568536	MS.gene39749:intron	60.0%
	TCCACCTCCCACGGCAGTTA+TGG	-	chr7.1:45568514-45568533	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	45567976	45568961	45567976	ID=MS.gene39749
chr7.1	mRNA	45567976	45568961	45567976	ID=MS.gene39749.t1;Parent=MS.gene39749
chr7.1	exon	45567976	45568350	45567976	ID=MS.gene39749.t1.exon1;Parent=MS.gene39749.t1
chr7.1	CDS	45567976	45568350	45567976	ID=cds.MS.gene39749.t1;Parent=MS.gene39749.t1
chr7.1	exon	45568683	45568961	45568683	ID=MS.gene39749.t1.exon2;Parent=MS.gene39749.t1
chr7.1	CDS	45568683	45568961	45568683	ID=cds.MS.gene39749.t1;Parent=MS.gene39749.t1

Gene Sequence

>MS.gene39749

ATGCATTTCACTAGAGTCAATTTACCTCCTAGTATTTTCGGTTGTAGGACCCTTGTCGTTCTTCGGTTGTCTAAGTTAAAAGTGAATGACCTTTCTCAATTGGTTGTAGATTTCCCTCTATTAAAAACTCTTCGTCTATGTTATGTGGGATTCGAATGTCGTGAACATTGCATAAAGCTTATATCAGGATGTCCAATTCTAGAGGAATTGCAATTTGAATGGATATCTGTGGCGAATGACAACCAGTCACCTGCTTTACCGGAAAATTTTCAATGCTTACCGAATTTGATTAGAGCAAGCATTTCAGACTTGTCTTCTACGGAAATTGTTCTGTTTTCTTTGCTTTGTCGGGCAAAGATTCTGTATGTAGACCTGGTAAGAATATTATATGACTCTCCAATAAATGTTTAAAAGAAATTAGGGTTTATTTCATTTCTAACTTTTGTATTTCACTGCAGGGCAATTGTTACAGCCATTTCCCTGTGTTTCAAAATCTAATCCACATGGAACTTATTCTTGACCATAACATTCGTAACCATAACTGCCGTGGGAGGTGGAATTGGGTGATAGAAGTGTTGCGACGTTGTCCCAAACTTCAAAATCTTAACATTCATCAGGTTTTGTTCTTGTCTAAGATTTTCTTTTATCTTACCTCAACAATTTTTTACATATTTTTTTTATAACAAAACTATTTCAATTGTGGACAGGATTTTGAGAATGGAAATGAAGTTGTGGACAATTGGATGGATCCAACCGTCACTCCAGAATGCCTTTCAACACAACTCAAAACGTGCATGCTTAAAGGATGTAAAAGCATGAAATGTGAGGTTCAATTTGCAAACTATATTATGCAGAATGCAAAAGTATTGAACACCATGACAATTAAGAGTGCGTCTTCCATAGATATAAATACCAAGCACCAAATGATAACGAAATTAGCTTCGTCGACAAGGGCCTCAACAACATGTAAACTCTTATTTGATTGA

Protein sequence

>MS.gene39749.t1

MHFTRVNLPPSIFGCRTLVVLRLSKLKVNDLSQLVVDFPLLKTLRLCYVGFECREHCIKLISGCPILEELQFEWISVANDNQSPALPENFQCLPNLIRASISDLSSTEIVLFSLLCRAKILYVDLDFENGNEVVDNWMDPTVTPECLSTQLKTCMLKGCKSMKCEVQFANYIMQNAKVLNTMTIKSASSIDINTKHQMITKLASSTRASTTCKLLFD