AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63095

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63095.t1 MTR_8g062270 88.406 414 23 1 1 389 41 454 0.0 741
MS.gene63095.t1 MTR_8g468760 61.244 418 99 8 1 388 34 418 1.93e-162 462
MS.gene63095.t1 MTR_5g092960 57.957 421 136 7 3 388 47 461 4.72e-152 437
MS.gene63095.t1 MTR_8g468840 56.971 416 142 8 2 387 40 448 8.62e-148 426
MS.gene63095.t1 MTR_8g467800 51.914 418 159 8 2 388 46 452 9.50e-128 375
MS.gene63095.t1 MTR_2g083840 48.095 420 172 7 3 388 49 456 9.37e-116 345
MS.gene63095.t1 MTR_4g032730 47.222 432 174 9 3 388 43 466 8.87e-114 340
MS.gene63095.t1 MTR_5g092960 57.846 325 101 5 3 294 47 368 1.28e-111 332
MS.gene63095.t1 MTR_8g468810 45.561 428 177 12 1 388 51 462 4.90e-109 328
MS.gene63095.t1 MTR_8g058970 46.861 446 165 14 1 388 45 476 2.39e-104 316
MS.gene63095.t1 MTR_8g468810 47.222 324 131 8 1 292 51 366 4.41e-83 258
MS.gene63095.t1 MTR_8g014260 38.679 424 204 14 4 388 44 450 4.64e-73 235
MS.gene63095.t1 MTR_8g445780 42.105 361 157 9 4 335 41 378 6.98e-73 233
MS.gene63095.t1 MTR_8g058965 38.979 431 204 12 2 388 40 455 5.98e-71 229
MS.gene63095.t1 MTR_8g468810 48.485 264 104 5 1 239 51 307 1.13e-69 222
MS.gene63095.t1 MTR_8g468810 48.485 264 104 5 1 239 51 307 1.33e-69 222
MS.gene63095.t1 MTR_8g468810 48.485 264 104 5 1 239 51 307 2.27e-69 222
MS.gene63095.t1 MTR_8g469020 36.028 433 215 10 2 388 34 450 3.90e-69 225
MS.gene63095.t1 MTR_8g070950 37.767 421 201 14 1 388 41 433 9.79e-66 216
MS.gene63095.t1 MTR_8g467800 48.364 275 102 7 2 247 46 309 2.69e-64 209
MS.gene63095.t1 MTR_8g062010 37.321 418 209 13 1 388 35 429 9.70e-64 210
MS.gene63095.t1 MTR_8g062310 36.730 422 182 16 4 388 54 427 1.21e-62 207
MS.gene63095.t1 MTR_4g050250 39.523 377 178 10 1 335 47 415 6.20e-59 197
MS.gene63095.t1 MTR_8g062080 35.681 426 206 15 1 388 49 444 6.45e-57 192
MS.gene63095.t1 MTR_8g014210 45.833 240 115 7 154 388 1 230 5.95e-53 176
MS.gene63095.t1 MTR_8g062300 32.967 455 208 18 1 388 52 476 8.22e-52 180
MS.gene63095.t1 MTR_4g024710 36.570 309 173 9 86 388 55 346 1.41e-46 163
MS.gene63095.t1 MTR_8g077460 31.500 400 196 16 4 388 38 374 3.43e-43 154
MS.gene63095.t1 MTR_8g467790 32.507 363 167 12 1 333 174 488 1.93e-38 144
MS.gene63095.t1 MTR_4g024745 40.741 243 130 6 132 370 48 280 4.05e-38 139
MS.gene63095.t1 MTR_8g014160 36.823 277 139 9 2 247 67 338 6.42e-35 133
MS.gene63095.t1 MTR_2g086020 31.328 399 178 15 1 388 1 314 1.24e-33 127
MS.gene63095.t1 MTR_5g080710 28.777 417 231 18 2 381 59 446 7.71e-22 97.1
MS.gene63095.t1 MTR_5g021550 46.667 120 53 5 4 118 47 160 5.95e-21 89.4
MS.gene63095.t1 MTR_8g014290 43.802 121 61 5 4 118 38 157 5.64e-20 86.3
MS.gene63095.t1 MTR_4g080787 27.751 418 243 21 2 376 45 446 6.48e-14 73.6
MS.gene63095.t1 MTR_4g024720 37.778 135 59 4 4 118 45 174 7.72e-14 70.5
MS.gene63095.t1 MTR_4g113810 32.727 165 83 5 63 199 2 166 2.24e-12 65.1
MS.gene63095.t1 MTR_5g039950 27.321 377 213 16 2 357 49 385 4.09e-12 67.8
MS.gene63095.t1 MTR_4g056070 28.333 360 204 15 25 343 89 435 8.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63095.t1 AT5G53840 24.703 421 254 16 2 386 44 437 2.26e-22 98.6
MS.gene63095.t1 AT1G16930 25.400 437 243 18 2 386 41 446 1.73e-18 87.0
MS.gene63095.t1 AT1G16930 25.400 437 243 18 2 386 41 446 1.73e-18 87.0
MS.gene63095.t1 AT1G16930 25.400 437 243 18 2 386 41 446 1.73e-18 87.0
MS.gene63095.t1 AT5G53635 24.766 428 253 15 3 389 27 426 1.26e-16 81.6
MS.gene63095.t1 AT5G38570 27.247 356 207 17 46 388 59 375 7.50e-16 79.0
MS.gene63095.t1 AT1G78750 24.153 443 253 18 2 389 44 458 1.19e-15 78.6
MS.gene63095.t1 AT1G78750 24.153 443 253 18 2 389 44 458 1.19e-15 78.6
MS.gene63095.t1 AT1G13780 23.756 442 255 16 2 386 36 452 1.52e-15 78.6
MS.gene63095.t1 AT5G56700 26.074 349 197 15 46 356 22 347 1.78e-15 77.4
MS.gene63095.t1 AT5G56420 24.292 424 250 16 2 388 32 421 4.19e-15 77.0
MS.gene63095.t1 AT5G56420 24.292 424 250 16 2 388 32 421 4.19e-15 77.0
MS.gene63095.t1 AT5G56420 24.292 424 250 16 2 388 32 421 4.19e-15 77.0
MS.gene63095.t1 AT1G69630 22.727 440 256 14 2 389 44 451 3.16e-14 74.3
MS.gene63095.t1 AT4G00160 28.093 388 208 21 2 351 42 396 4.56e-14 73.9
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 8.71e-14 72.4
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 8.71e-14 72.4
MS.gene63095.t1 AT2G26030 23.409 440 256 19 2 386 30 443 9.16e-14 72.8
MS.gene63095.t1 AT5G27750 25.850 441 254 19 2 386 31 454 1.00e-13 72.8
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 1.16e-13 72.4
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 1.16e-13 72.4
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 1.16e-13 72.4
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 38 350 1.16e-13 72.4
MS.gene63095.t1 AT1G06630 26.074 326 193 10 2 292 47 359 1.36e-13 72.4
MS.gene63095.t1 AT2G26030 23.409 440 251 19 2 386 30 438 2.19e-13 71.6
MS.gene63095.t1 AT2G26030 23.409 440 251 19 2 386 30 438 2.19e-13 71.6
MS.gene63095.t1 AT1G06630 25.664 339 199 11 2 300 38 363 2.31e-13 71.6
MS.gene63095.t1 AT5G22660 25.000 392 218 18 56 389 73 446 2.91e-13 71.2
MS.gene63095.t1 AT3G26920 27.246 345 193 16 83 389 16 340 4.23e-13 70.1
MS.gene63095.t1 AT3G26920 27.246 345 193 16 83 389 16 340 4.23e-13 70.1
MS.gene63095.t1 AT5G60610 25.954 393 216 18 2 356 28 383 5.92e-13 70.1
MS.gene63095.t1 AT5G60610 25.954 393 216 18 2 356 28 383 5.92e-13 70.1
MS.gene63095.t1 AT1G78760 22.506 431 256 18 2 386 42 440 6.64e-13 70.1
MS.gene63095.t1 AT5G22610 22.595 447 259 17 2 387 44 464 6.65e-13 70.5
MS.gene63095.t1 AT3G50710 24.769 432 241 20 3 386 29 424 7.35e-13 70.1
MS.gene63095.t1 AT4G13985 22.093 430 274 14 1 386 44 456 9.18e-13 69.7
MS.gene63095.t1 AT5G22610 23.278 421 258 18 2 387 44 434 1.10e-12 69.7
MS.gene63095.t1 AT4G26340 23.239 426 253 17 2 388 28 418 2.34e-12 68.6
MS.gene63095.t1 AT5G22720 23.441 465 231 22 2 389 49 465 5.30e-12 67.4
MS.gene63095.t1 AT3G52680 27.525 396 206 20 2 355 47 403 7.20e-12 67.0
MS.gene63095.t1 AT5G22730 22.398 442 254 16 2 386 54 463 7.36e-12 67.0
MS.gene63095.t1 AT5G22730 22.398 442 254 16 2 386 54 463 7.36e-12 67.0
MS.gene63095.t1 AT5G22700 24.011 379 209 14 2 333 32 378 9.24e-12 66.6
MS.gene63095.t1 AT5G22700 24.011 379 209 14 2 333 32 378 9.24e-12 66.6
MS.gene63095.t1 AT5G22700 24.011 379 209 14 2 333 32 378 9.24e-12 66.6
MS.gene63095.t1 AT5G22700 24.011 379 209 14 2 333 32 378 9.24e-12 66.6
MS.gene63095.t1 AT5G22700 23.885 381 207 14 2 333 69 415 1.09e-11 66.6
MS.gene63095.t1 AT1G13780 24.918 305 167 12 2 257 36 327 1.48e-11 65.5
MS.gene63095.t1 AT5G56820 26.512 430 224 21 2 386 41 423 1.94e-11 65.9
MS.gene63095.t1 AT1G06630 25.912 274 161 8 2 246 38 298 2.91e-11 64.3

Find 102 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTAGTCCTGAATCTT+TGG 0.225367 8.1:-42916676 MS.gene63095:CDS
GAAAATGAGCTGGAATTTAT+TGG 0.228561 8.1:-42915928 MS.gene63095:CDS
AAACTCCGGAAAATGTAAAA+TGG 0.241590 8.1:+42916264 None:intergenic
TTGACCTTTATTCACTTATA+CGG 0.248737 8.1:-42915958 MS.gene63095:CDS
CTGAATCTTTGGACATAATT+CGG 0.268479 8.1:-42916665 MS.gene63095:CDS
CCAGAGGTTGCGCCATTTGC+GGG 0.271885 8.1:+42917452 None:intergenic
GGCTCAACAGATTCACATTT+AGG 0.287471 8.1:+42916465 None:intergenic
ATTCGGTGCCTTCATATAGA+TGG 0.301405 8.1:-42916023 MS.gene63095:CDS
AAATGGGATATGAGGCATTT+AGG 0.311419 8.1:+42915979 None:intergenic
CGAATTATGTCCAAAGATTC+AGG 0.318966 8.1:+42916666 None:intergenic
CAATGATTGTTGATGAATAT+TGG 0.328994 8.1:-42915873 MS.gene63095:CDS
AATCTCCTTCGAGCTCTTTC+CGG 0.331425 8.1:-42916435 MS.gene63095:CDS
TTCCGTGATGCCGCGGCTGT+TGG 0.352559 8.1:-42916534 MS.gene63095:CDS
AAAATGAGCTGGAATTTATT+GGG 0.368042 8.1:-42915927 MS.gene63095:CDS
CTCAAGTACCTTAGCCTTGA+AGG 0.369562 8.1:-42916564 MS.gene63095:CDS
AGAGGGTGAGATGAAATTCC+TGG 0.373012 8.1:+42917193 None:intergenic
TCCGTGATGCCGCGGCTGTT+GGG 0.374852 8.1:-42916533 MS.gene63095:CDS
TAAGCATAGAATGGATCGTT+TGG 0.375665 8.1:+42917258 None:intergenic
TCCGTCGCTCACGCGTCGTT+CGG 0.384887 8.1:-42917308 MS.gene63095:CDS
CCCGCAAATGGCGCAACCTC+TGG 0.386923 8.1:-42917452 MS.gene63095:CDS
TGAATCTTTGGACATAATTC+GGG 0.390671 8.1:-42916664 MS.gene63095:CDS
CTGTCCTGTTCTCGAGAATC+TGG 0.392606 8.1:-42916703 MS.gene63095:CDS
TAGTTCTAGACGTTTAATTC+CGG 0.398389 8.1:+42916416 None:intergenic
AACTCCGGAAAATGTAAAAT+GGG 0.406590 8.1:+42916265 None:intergenic
GAAGAGTGTGAGAGGTAGGT+TGG 0.409799 8.1:+42917152 None:intergenic
CGCCATTGGGCCCCACCTCC+AGG 0.411986 8.1:-42917211 MS.gene63095:CDS
TCCAGAGGTTGCGCCATTTG+CGG 0.418266 8.1:+42917451 None:intergenic
ATAAGTGAATAAAGGTCAAA+TGG 0.420834 8.1:+42915962 None:intergenic
AAGAGAAGAGTGTGAGAGGT+AGG 0.423108 8.1:+42917148 None:intergenic
TTTAACTTCTTCAAGGAAGA+TGG 0.423156 8.1:+42916639 None:intergenic
CGAACAATTCATGTTGTTCA+CGG 0.429639 8.1:-42917355 MS.gene63095:CDS
TTGATAATAACGTTGGGGCT+TGG 0.431994 8.1:-42916608 MS.gene63095:CDS
TCACTGTTGATAATAACGTT+GGG 0.441226 8.1:-42916614 MS.gene63095:CDS
CACGGAATGTGATCCCTTCA+AGG 0.450691 8.1:+42916550 None:intergenic
AGTTCCAGATTCTCGAGAAC+AGG 0.463808 8.1:+42916699 None:intergenic
TAAAGGTCAAATGGGATATG+AGG 0.466574 8.1:+42915971 None:intergenic
TGTTCGTTGAATTCGTCGTC+GGG 0.472888 8.1:+42917372 None:intergenic
TGAGCCTAGTCTCCCGCAAA+TGG 0.477237 8.1:-42917464 MS.gene63095:CDS
AAGCATAGAATGGATCGTTT+GGG 0.488136 8.1:+42917259 None:intergenic
CGTGGCTCAGTATCGCCATT+GGG 0.488486 8.1:-42917224 MS.gene63095:CDS
GGTGGATCGATCATTTGATT+CGG 0.488770 8.1:-42916040 MS.gene63095:CDS
CATCTCACCCTCTTTACTGC+CGG 0.489055 8.1:-42917183 MS.gene63095:CDS
TTCCTGGAGGTGGGGCCCAA+TGG 0.489336 8.1:+42917209 None:intergenic
GCTATGAGAGTTTCTAGCAT+TGG 0.489509 8.1:+42916166 None:intergenic
GAGCAAGAGAAGAGTGTGAG+AGG 0.493002 8.1:+42917144 None:intergenic
TTGTTCGTTGAATTCGTCGT+CGG 0.494760 8.1:+42917371 None:intergenic
ATCACTGTTGATAATAACGT+TGG 0.506326 8.1:-42916615 MS.gene63095:CDS
TAAGTGAATAAAGGTCAAAT+GGG 0.512234 8.1:+42915963 None:intergenic
TGAGATGAAATTCCTGGAGG+TGG 0.515053 8.1:+42917199 None:intergenic
TGCGCCATTTGCGGGAGACT+AGG 0.515202 8.1:+42917460 None:intergenic
GAGATGAAATTCCTGGAGGT+GGG 0.517207 8.1:+42917200 None:intergenic
AGGTAGGTTGGTGAAGGCGC+CGG 0.521658 8.1:+42917164 None:intergenic
TGAAGGCGCCGGCAGTAAAG+AGG 0.522374 8.1:+42917175 None:intergenic
TGGCACATGGCAGATCCTCT+TGG 0.523168 8.1:+42915808 None:intergenic
AGAATGGATCGTTTGGGATG+TGG 0.523537 8.1:+42917265 None:intergenic
ACATCCGTATAAGTGAATAA+AGG 0.528221 8.1:+42915954 None:intergenic
TTCGGTGCCTTCATATAGAT+GGG 0.534742 8.1:-42916022 MS.gene63095:CDS
TCGACTGAGTAAGCATAGAA+TGG 0.539936 8.1:+42917249 None:intergenic
CAGATTCTCGAGAACAGGAC+AGG 0.544753 8.1:+42916704 None:intergenic
GGCGAGACCAACCAGACCGC+TGG 0.544821 8.1:-42915852 MS.gene63095:CDS
ACAGATTCACATTTAGGAGT+GGG 0.547187 8.1:+42916471 None:intergenic
ACGTGGCTCAGTATCGCCAT+TGG 0.547510 8.1:-42917225 MS.gene63095:CDS
TCCGAACGACGCGTGAGCGA+CGG 0.553880 8.1:+42917307 None:intergenic
CGGATGTCCAGAAAATGAGC+TGG 0.557418 8.1:-42915938 MS.gene63095:CDS
TTCGTTGAATTCGTCGTCGG+GGG 0.559805 8.1:+42917374 None:intergenic
ATGTGATCCCTTCAAGGCTA+AGG 0.560362 8.1:+42916556 None:intergenic
TCAGTCAGAGAAATTTAACT+TGG 0.568365 8.1:+42915788 None:intergenic
GAAGGCGCCGGCAGTAAAGA+GGG 0.571443 8.1:+42917176 None:intergenic
TGAAGCAAATAGTGAAACTC+CGG 0.573562 8.1:+42916250 None:intergenic
CGCGTGAGCGACGGAGAGCG+AGG 0.574663 8.1:+42917316 None:intergenic
TCCCAACAGCCGCGGCATCA+CGG 0.577725 8.1:+42916532 None:intergenic
TTTGCCTCCCATCTATATGA+AGG 0.577891 8.1:+42916015 None:intergenic
GGATGTGGTCGGAGGAGAGA+CGG 0.581818 8.1:+42917280 None:intergenic
GAACAGGACAGGCAGAGAGA+AGG 0.583613 8.1:+42916715 None:intergenic
TCAAGTACCTTAGCCTTGAA+GGG 0.585522 8.1:-42916563 MS.gene63095:CDS
CACTGTTGATAATAACGTTG+GGG 0.587506 8.1:-42916613 MS.gene63095:CDS
TGTGAGAGGTAGGTTGGTGA+AGG 0.592775 8.1:+42917158 None:intergenic
AGATGAAATTCCTGGAGGTG+GGG 0.593906 8.1:+42917201 None:intergenic
AACAGATTCACATTTAGGAG+TGG 0.595892 8.1:+42916470 None:intergenic
AGACTTCGAGATTCTTCCAG+AGG 0.596831 8.1:+42917436 None:intergenic
GATCACATTCCGTGATGCCG+CGG 0.609193 8.1:-42916541 MS.gene63095:CDS
TGGCTTGAAATAGATGCACC+TGG 0.612723 8.1:-42916588 MS.gene63095:CDS
GAAAACTTCAGTCACCTTTG+GGG 0.614942 8.1:+42916383 None:intergenic
GCTCGAAGGAGATTGAGTAA+AGG 0.617059 8.1:+42916444 None:intergenic
ATTTATGTTCGACATCGACA+TGG 0.622551 8.1:-42916143 MS.gene63095:intron
GGCAGAGAGAAGGATATGCA+TGG 0.624602 8.1:+42916725 None:intergenic
AGGCTAAGGTACTTGAGACC+AGG 0.624770 8.1:+42916570 None:intergenic
GTGCAAGTTCCCAACAGCCG+CGG 0.628805 8.1:+42916524 None:intergenic
ACTCCGGAAAATGTAAAATG+GGG 0.632256 8.1:+42916266 None:intergenic
AAAATTTCAGATCTACCAAG+AGG 0.633493 8.1:-42915823 MS.gene63095:CDS
GAGAAATTTAACTTGGCACA+TGG 0.635924 8.1:+42915795 None:intergenic
ATCGTTTGGGATGTGGTCGG+AGG 0.641698 8.1:+42917272 None:intergenic
TGTATTCATTGCATTTGTCG+CGG 0.641710 8.1:+42917406 None:intergenic
ACTACATAATTCAACCCCAA+AGG 0.648139 8.1:-42916397 MS.gene63095:intron
TGGATCGTTTGGGATGTGGT+CGG 0.649823 8.1:+42917269 None:intergenic
GTTCGTTGAATTCGTCGTCG+GGG 0.651770 8.1:+42917373 None:intergenic
ATGCTTACTCAGTCGACACG+TGG 0.655290 8.1:-42917242 MS.gene63095:CDS
CTCCGGAAAATGTAAAATGG+GGG 0.656185 8.1:+42916267 None:intergenic
TAATTCCGGAAAGAGCTCGA+AGG 0.661187 8.1:+42916430 None:intergenic
TGTTGGGAACTTGCACAGCG+TGG 0.697966 8.1:-42916517 MS.gene63095:CDS
GGTGCCTTCATATAGATGGG+AGG 0.701927 8.1:-42916019 MS.gene63095:CDS
GGGTGAGATGAAATTCCTGG+AGG 0.756405 8.1:+42917196 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATAAGAGAAAATT+GGG + chr8.1:42916297-42916316 None:intergenic 10.0%
!! TATTATATATAAGAGAAAAT+TGG + chr8.1:42916298-42916317 None:intergenic 10.0%
!! AAAACAAAAATAAAGAAAAG+AGG + chr8.1:42916180-42916199 None:intergenic 15.0%
!!! TTTTCTCTTATATATAATAC+CGG - chr8.1:42916299-42916318 MS.gene63095:intron 15.0%
! AAAATGAGCTGGAATTTATT+GGG - chr8.1:42917330-42917349 MS.gene63095:CDS 25.0%
! ATAAGTGAATAAAGGTCAAA+TGG + chr8.1:42917298-42917317 None:intergenic 25.0%
! TAAAGAAAAGAGGATGAAAT+AGG + chr8.1:42916170-42916189 None:intergenic 25.0%
! TAAGTGAATAAAGGTCAAAT+GGG + chr8.1:42917297-42917316 None:intergenic 25.0%
! TTGACCTTTATTCACTTATA+CGG - chr8.1:42917299-42917318 MS.gene63095:CDS 25.0%
!! CAATGATTGTTGATGAATAT+TGG - chr8.1:42917384-42917403 MS.gene63095:CDS 25.0%
!!! AACAAAAAAGTTGAGTTGAA+AGG + chr8.1:42917052-42917071 None:intergenic 25.0%
!!! ACAAAAAAGTTGAGTTGAAA+GGG + chr8.1:42917051-42917070 None:intergenic 25.0%
!!! AGTGATTTTTAACTTCTTCA+AGG + chr8.1:42916628-42916647 None:intergenic 25.0%
AAAATTTCAGATCTACCAAG+AGG - chr8.1:42917434-42917453 MS.gene63095:CDS 30.0%
AAACTCCGGAAAATGTAAAA+TGG + chr8.1:42916996-42917015 None:intergenic 30.0%
AACTCCGGAAAATGTAAAAT+GGG + chr8.1:42916995-42917014 None:intergenic 30.0%
ACATCCGTATAAGTGAATAA+AGG + chr8.1:42917306-42917325 None:intergenic 30.0%
CTGAATCTTTGGACATAATT+CGG - chr8.1:42916592-42916611 MS.gene63095:CDS 30.0%
GAAAATGAGCTGGAATTTAT+TGG - chr8.1:42917329-42917348 MS.gene63095:CDS 30.0%
TAAAGTTAAACTACTTCCTC+CGG + chr8.1:42916321-42916340 None:intergenic 30.0%
TCTCTTATATATAATACCGG+AGG - chr8.1:42916302-42916321 MS.gene63095:intron 30.0%
TGAATCTTTGGACATAATTC+GGG - chr8.1:42916593-42916612 MS.gene63095:CDS 30.0%
TTTCTTTAGTCCTGAATCTT+TGG - chr8.1:42916581-42916600 MS.gene63095:CDS 30.0%
! ATAAATTCCAGCTCATTTTC+TGG + chr8.1:42917329-42917348 None:intergenic 30.0%
! ATTGGGTATATTTTGCAACA+TGG - chr8.1:42917347-42917366 MS.gene63095:CDS 30.0%
! CATTCCATTGTTATTGTCTA+GGG - chr8.1:42916203-42916222 MS.gene63095:CDS 30.0%
! TTTAACTTCTTCAAGGAAGA+TGG + chr8.1:42916621-42916640 None:intergenic 30.0%
!! AAAAAAGTTGAGTTGAAAGG+GGG + chr8.1:42917049-42917068 None:intergenic 30.0%
!! AATTCGAAAGTTGATGTATC+CGG - chr8.1:42916234-42916253 MS.gene63095:CDS 30.0%
!! ATCACTGTTGATAATAACGT+TGG - chr8.1:42916642-42916661 MS.gene63095:CDS 30.0%
!! CAAAAAAGTTGAGTTGAAAG+GGG + chr8.1:42917050-42917069 None:intergenic 30.0%
!! TAGTTCTAGACGTTTAATTC+CGG + chr8.1:42916844-42916863 None:intergenic 30.0%
!! TCACTGTTGATAATAACGTT+GGG - chr8.1:42916643-42916662 MS.gene63095:CDS 30.0%
!!! CTGAAATTTTTTTCATCCAG+CGG + chr8.1:42917424-42917443 None:intergenic 30.0%
AACAGATTCACATTTAGGAG+TGG + chr8.1:42916790-42916809 None:intergenic 35.0%
AAGCATAGAATGGATCGTTT+GGG + chr8.1:42916001-42916020 None:intergenic 35.0%
ACAGATTCACATTTAGGAGT+GGG + chr8.1:42916789-42916808 None:intergenic 35.0%
ACTACATAATTCAACCCCAA+AGG - chr8.1:42916860-42916879 MS.gene63095:intron 35.0%
ACTCCGGAAAATGTAAAATG+GGG + chr8.1:42916994-42917013 None:intergenic 35.0%
ATCCGGTTCAAAATTTGGAT+CGG - chr8.1:42916251-42916270 MS.gene63095:CDS 35.0%
ATGAAAACTTCAGTCACCTT+TGG + chr8.1:42916879-42916898 None:intergenic 35.0%
ATGTAATGTAACAGTCTCAG+TGG - chr8.1:42916414-42916433 MS.gene63095:CDS 35.0%
ATTTATGTTCGACATCGACA+TGG - chr8.1:42917114-42917133 MS.gene63095:intron 35.0%
CGAACAATTCATGTTGTTCA+CGG - chr8.1:42915902-42915921 MS.gene63095:CDS 35.0%
CGAATTATGTCCAAAGATTC+AGG + chr8.1:42916594-42916613 None:intergenic 35.0%
CTAACCCTAGACAATAACAA+TGG + chr8.1:42916210-42916229 None:intergenic 35.0%
GATGTATCCGGTTCAAAATT+TGG - chr8.1:42916246-42916265 MS.gene63095:CDS 35.0%
TAAAGGTCAAATGGGATATG+AGG + chr8.1:42917289-42917308 None:intergenic 35.0%
TAAGCATAGAATGGATCGTT+TGG + chr8.1:42916002-42916021 None:intergenic 35.0%
TGAAAACTTCAGTCACCTTT+GGG + chr8.1:42916878-42916897 None:intergenic 35.0%
TGAAGCAAATAGTGAAACTC+CGG + chr8.1:42917010-42917029 None:intergenic 35.0%
TGTATTCATTGCATTTGTCG+CGG + chr8.1:42915854-42915873 None:intergenic 35.0%
! AAATGGGATATGAGGCATTT+AGG + chr8.1:42917281-42917300 None:intergenic 35.0%
! ATCCGATCCAAATTTTGAAC+CGG + chr8.1:42916256-42916275 None:intergenic 35.0%
! GCATTCCATTGTTATTGTCT+AGG - chr8.1:42916202-42916221 MS.gene63095:CDS 35.0%
!! CACTGTTGATAATAACGTTG+GGG - chr8.1:42916644-42916663 MS.gene63095:CDS 35.0%
!! GAGAAATTTAACTTGGCACA+TGG + chr8.1:42917465-42917484 None:intergenic 35.0%
!!! GCGTTCGTGTTTTTTTTGTT+TGG - chr8.1:42917164-42917183 MS.gene63095:CDS 35.0%
AAATAGCCACTGCTTGTACA+CGG + chr8.1:42916966-42916985 None:intergenic 40.0%
AATCAAATGATCGATCCACC+TGG + chr8.1:42917217-42917236 None:intergenic 40.0%
ACGGTAAGCAAATTTCCGAA+GGG + chr8.1:42916464-42916483 None:intergenic 40.0%
CAACAAAGCTCGAGTTAAAC+TGG + chr8.1:42917145-42917164 None:intergenic 40.0%
CTCCGGAAAATGTAAAATGG+GGG + chr8.1:42916993-42917012 None:intergenic 40.0%
GAAAACTTCAGTCACCTTTG+GGG + chr8.1:42916877-42916896 None:intergenic 40.0%
GGCTCAACAGATTCACATTT+AGG + chr8.1:42916795-42916814 None:intergenic 40.0%
GGTGGATCGATCATTTGATT+CGG - chr8.1:42917217-42917236 MS.gene63095:CDS 40.0%
TCGACTGAGTAAGCATAGAA+TGG + chr8.1:42916011-42916030 None:intergenic 40.0%
TTGTTCGTTGAATTCGTCGT+CGG + chr8.1:42915889-42915908 None:intergenic 40.0%
TTTGCCTCCCATCTATATGA+AGG + chr8.1:42917245-42917264 None:intergenic 40.0%
! AATTTGCTTACCGTCGTTGA+AGG - chr8.1:42916470-42916489 MS.gene63095:CDS 40.0%
! TGCCCCCATTTTACATTTTC+CGG - chr8.1:42916988-42917007 MS.gene63095:intron 40.0%
! TTGATAATAACGTTGGGGCT+TGG - chr8.1:42916649-42916668 MS.gene63095:CDS 40.0%
!! ATTCGGTGCCTTCATATAGA+TGG - chr8.1:42917234-42917253 MS.gene63095:CDS 40.0%
!! GCTATGAGAGTTTCTAGCAT+TGG + chr8.1:42917094-42917113 None:intergenic 40.0%
!! TCAAGTACCTTAGCCTTGAA+GGG - chr8.1:42916694-42916713 MS.gene63095:CDS 40.0%
!! TTCGGTGCCTTCATATAGAT+GGG - chr8.1:42917235-42917254 MS.gene63095:CDS 40.0%
!!! ATTTTTTTCATCCAGCGGTC+TGG + chr8.1:42917419-42917438 None:intergenic 40.0%
AATCTCCTTCGAGCTCTTTC+CGG - chr8.1:42916822-42916841 MS.gene63095:intron 45.0%
AGACTTCGAGATTCTTCCAG+AGG + chr8.1:42915824-42915843 None:intergenic 45.0%
AGAGGGTGAGATGAAATTCC+TGG + chr8.1:42916067-42916086 None:intergenic 45.0%
AGATGAAATTCCTGGAGGTG+GGG + chr8.1:42916059-42916078 None:intergenic 45.0%
AGTTCCAGATTCTCGAGAAC+AGG + chr8.1:42916561-42916580 None:intergenic 45.0%
ATGTGATCCCTTCAAGGCTA+AGG + chr8.1:42916704-42916723 None:intergenic 45.0%
ATTTCCGAAGGGTCTTGCAA+TGG + chr8.1:42916453-42916472 None:intergenic 45.0%
GACGGTAAGCAAATTTCCGA+AGG + chr8.1:42916465-42916484 None:intergenic 45.0%
GAGATGAAATTCCTGGAGGT+GGG + chr8.1:42916060-42916079 None:intergenic 45.0%
GCTCGAAGGAGATTGAGTAA+AGG + chr8.1:42916816-42916835 None:intergenic 45.0%
TAATTCCGGAAAGAGCTCGA+AGG + chr8.1:42916830-42916849 None:intergenic 45.0%
TGAGATGAAATTCCTGGAGG+TGG + chr8.1:42916061-42916080 None:intergenic 45.0%
TGGCTTGAAATAGATGCACC+TGG - chr8.1:42916669-42916688 MS.gene63095:CDS 45.0%
TGTTCGTTGAATTCGTCGTC+GGG + chr8.1:42915888-42915907 None:intergenic 45.0%
! AAGAGAAGAGTGTGAGAGGT+AGG + chr8.1:42916112-42916131 None:intergenic 45.0%
! AGAATGGATCGTTTGGGATG+TGG + chr8.1:42915995-42916014 None:intergenic 45.0%
!! CTCAAGTACCTTAGCCTTGA+AGG - chr8.1:42916693-42916712 MS.gene63095:CDS 45.0%
AGTTCCAGCACCTTCAACGA+CGG + chr8.1:42916483-42916502 None:intergenic 50.0%
ATCAGTTGCTCCTTGTTGCC+AGG - chr8.1:42917196-42917215 MS.gene63095:CDS 50.0%
ATGCTTACTCAGTCGACACG+TGG - chr8.1:42916015-42916034 MS.gene63095:CDS 50.0%
CACGGAATGTGATCCCTTCA+AGG + chr8.1:42916710-42916729 None:intergenic 50.0%
CAGATTCTCGAGAACAGGAC+AGG + chr8.1:42916556-42916575 None:intergenic 50.0%
CATCTCACCCTCTTTACTGC+CGG - chr8.1:42916074-42916093 MS.gene63095:intron 50.0%
CGGATGTCCAGAAAATGAGC+TGG - chr8.1:42917319-42917338 MS.gene63095:CDS 50.0%
CTGTCCTGTTCTCGAGAATC+TGG - chr8.1:42916554-42916573 MS.gene63095:CDS 50.0%
GCTCTAACCTTGTCTCTCTC+AGG - chr8.1:42916132-42916151 MS.gene63095:intron 50.0%
GGCAGAGAGAAGGATATGCA+TGG + chr8.1:42916535-42916554 None:intergenic 50.0%
GGGTGAGATGAAATTCCTGG+AGG + chr8.1:42916064-42916083 None:intergenic 50.0%
GGTGCCTTCATATAGATGGG+AGG - chr8.1:42917238-42917257 MS.gene63095:CDS 50.0%
GTTCGTTGAATTCGTCGTCG+GGG + chr8.1:42915887-42915906 None:intergenic 50.0%
GTTGCCATTGCAAGACCCTT+CGG - chr8.1:42916446-42916465 MS.gene63095:CDS 50.0%
TTCGTTGAATTCGTCGTCGG+GGG + chr8.1:42915886-42915905 None:intergenic 50.0%
TTGCATGCCTGAGAGAGACA+AGG + chr8.1:42916142-42916161 None:intergenic 50.0%
! AGGCTAAGGTACTTGAGACC+AGG + chr8.1:42916690-42916709 None:intergenic 50.0%
! CTTTTGCCGTGTACAAGCAG+TGG - chr8.1:42916957-42916976 MS.gene63095:intron 50.0%
! GAAGAGTGTGAGAGGTAGGT+TGG + chr8.1:42916108-42916127 None:intergenic 50.0%
! GAGCAAGAGAAGAGTGTGAG+AGG + chr8.1:42916116-42916135 None:intergenic 50.0%
! TGGATCGTTTGGGATGTGGT+CGG + chr8.1:42915991-42916010 None:intergenic 50.0%
! TTTTCATCCAGCGGTCTGGT+TGG + chr8.1:42917415-42917434 None:intergenic 50.0%
!! TGTGAGAGGTAGGTTGGTGA+AGG + chr8.1:42916102-42916121 None:intergenic 50.0%
ACGTGGCTCAGTATCGCCAT+TGG - chr8.1:42916032-42916051 MS.gene63095:CDS 55.0%
AGTTGCTCCTTGTTGCCAGG+TGG - chr8.1:42917199-42917218 MS.gene63095:CDS 55.0%
CGTGGCTCAGTATCGCCATT+GGG - chr8.1:42916033-42916052 MS.gene63095:CDS 55.0%
GAACAGGACAGGCAGAGAGA+AGG + chr8.1:42916545-42916564 None:intergenic 55.0%
GATCACATTCCGTGATGCCG+CGG - chr8.1:42916716-42916735 MS.gene63095:CDS 55.0%
GATCGATCCACCTGGCAACA+AGG + chr8.1:42917209-42917228 None:intergenic 55.0%
TCCAGAGGTTGCGCCATTTG+CGG + chr8.1:42915809-42915828 None:intergenic 55.0%
TGAGCCTAGTCTCCCGCAAA+TGG - chr8.1:42915793-42915812 MS.gene63095:CDS 55.0%
TGGCACATGGCAGATCCTCT+TGG + chr8.1:42917452-42917471 None:intergenic 55.0%
TGTTGGGAACTTGCACAGCG+TGG - chr8.1:42916740-42916759 MS.gene63095:CDS 55.0%
! ATCGTTTGGGATGTGGTCGG+AGG + chr8.1:42915988-42916007 None:intergenic 55.0%
! CTTACCGTCGTTGAAGGTGC+TGG - chr8.1:42916476-42916495 MS.gene63095:CDS 55.0%
CCAGAGGTTGCGCCATTTGC+GGG + chr8.1:42915808-42915827 None:intergenic 60.0%
GGATGTGGTCGGAGGAGAGA+CGG + chr8.1:42915980-42915999 None:intergenic 60.0%
GTGCAAGTTCCCAACAGCCG+CGG + chr8.1:42916736-42916755 None:intergenic 60.0%
TGAATTCGTCGTCGGGGGCT+TGG + chr8.1:42915881-42915900 None:intergenic 60.0%
TGCGCCATTTGCGGGAGACT+AGG + chr8.1:42915800-42915819 None:intergenic 60.0%
!! AGGTAGGTTGGTGAAGGCGC+CGG + chr8.1:42916096-42916115 None:intergenic 60.0%
!! GAAGGCGCCGGCAGTAAAGA+GGG + chr8.1:42916084-42916103 None:intergenic 60.0%
!! TGAAGGCGCCGGCAGTAAAG+AGG + chr8.1:42916085-42916104 None:intergenic 60.0%
CCCGCAAATGGCGCAACCTC+TGG - chr8.1:42915805-42915824 MS.gene63095:CDS 65.0%
TCCCAACAGCCGCGGCATCA+CGG + chr8.1:42916728-42916747 None:intergenic 65.0%
TCCGAACGACGCGTGAGCGA+CGG + chr8.1:42915953-42915972 None:intergenic 65.0%
TCCGTCGCTCACGCGTCGTT+CGG - chr8.1:42915949-42915968 MS.gene63095:CDS 65.0%
TCCGTGATGCCGCGGCTGTT+GGG - chr8.1:42916724-42916743 MS.gene63095:CDS 65.0%
TTCCGTGATGCCGCGGCTGT+TGG - chr8.1:42916723-42916742 MS.gene63095:CDS 65.0%
TTCCTGGAGGTGGGGCCCAA+TGG + chr8.1:42916051-42916070 None:intergenic 65.0%
GGCGAGACCAACCAGACCGC+TGG - chr8.1:42917405-42917424 MS.gene63095:CDS 70.0%
CGCCATTGGGCCCCACCTCC+AGG - chr8.1:42916046-42916065 MS.gene63095:intron 75.0%
CGCGTGAGCGACGGAGAGCG+AGG + chr8.1:42915944-42915963 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 42915792 42917487 42915792 ID=MS.gene63095
chr8.1 mRNA 42915792 42917487 42915792 ID=MS.gene63095.t1;Parent=MS.gene63095
chr8.1 exon 42917137 42917487 42917137 ID=MS.gene63095.t1.exon1;Parent=MS.gene63095.t1
chr8.1 CDS 42917137 42917487 42917137 ID=cds.MS.gene63095.t1;Parent=MS.gene63095.t1
chr8.1 exon 42916398 42916787 42916398 ID=MS.gene63095.t1.exon2;Parent=MS.gene63095.t1
chr8.1 CDS 42916398 42916787 42916398 ID=cds.MS.gene63095.t1;Parent=MS.gene63095.t1
chr8.1 exon 42916144 42916302 42916144 ID=MS.gene63095.t1.exon3;Parent=MS.gene63095.t1
chr8.1 CDS 42916144 42916302 42916144 ID=cds.MS.gene63095.t1;Parent=MS.gene63095.t1
chr8.1 exon 42915792 42916061 42915792 ID=MS.gene63095.t1.exon4;Parent=MS.gene63095.t1
chr8.1 CDS 42915792 42916061 42915792 ID=cds.MS.gene63095.t1;Parent=MS.gene63095.t1
Gene Sequence

>MS.gene63095

ATGAGCCTAGTCTCCCGCAAATGGCGCAACCTCTGGAAGAATCTCGAAGTCTTCGATTTCCGCGACAAATGCAATGAATACAGCTACCAAGCCCCCGACGACGAATTCAACGAACAATTCATGTTGTTCACGGTTTTCGTCAACACTGTCCTCGCTCTCCGTCGCTCACGCGTCGTTCGGAAGTTCCGTCTCTCCTCCGACCACATCCCAAACGATCCATTCTATGCTTACTCAGTCGACACGTGGCTCAGTATCGCCATTGGGCCCCACCTCCAGGAATTTCATCTCACCCTCTTTACTGCCGGCGCCTTCACCAACCTACCTCTCACACTCTTCTCTTGCTCTAACCTTGTCTCTCTCAGGCATGCAACAATTCCTATTTCATCCTCTTTTCTTTATTTTTGTTTTCTGCATTCCATTGTTATTGTCTAGGGTTAGAGAAAATTCGAAAGTTGATGTATCCGGTTCAAAATTTGGATCGGATACATCAACTTTTTGTTAACCCAATTTTCTCTTATATATAATACCGGAGGAAGTAGTTTAACTTTAATTTTTATGCTTGTTCAATTTAGCTGTTTTGATTTAATTTAAATGATGATAACTTAACATAACACATTCATGAATGTAATGTAACAGTCTCAGTGGATATATATTGTTGCCATTGCAAGACCCTTCGGAAATTTGCTTACCGTCGTTGAAGGTGCTGGAACTACTACAAATGCATCACTTGAATTTGAGTTCCATGCATATCCTTCTCTCTGCCTGTCCTGTTCTCGAGAATCTGGAACTTTTCTTTAGTCCTGAATCTTTGGACATAATTCGGGTGCCATCTTCCTTGAAGAAGTTAAAAATCACTGTTGATAATAACGTTGGGGCTTGGCTTGAAATAGATGCACCTGGTCTCAAGTACCTTAGCCTTGAAGGGATCACATTCCGTGATGCCGCGGCTGTTGGGAACTTGCACAGCGTGGAAGAAGCATATCTTGATGTATTTCCCACTCCTAAATGTGAATCTGTTGAGCCTTTACTCAATCTCCTTCGAGCTCTTTCCGGAATTAAACGTCTAGAACTACATAATTCAACCCCAAAGGTGACTGAAGTTTTCATTATTTGTAGTATATGTTGTTTTGTAGTAATAATTATTAAATAATCATTTAATCACTTGCTTTTGCCGTGTACAAGCAGTGGCTATTTGCTGCCCCCATTTTACATTTTCCGGAGTTTCACTATTTGCTTCATCTAAAGCTTAAGTATCCCCCTTTCAACTCAACTTTTTTGTTCGACGTGCTTCAAAAATGTCCAATGCTAGAAACTCTCATAGCATTTATGTTCGACATCGACATGGTTTGTCCAGTTTAACTCGAGCTTTGTTGCGTTCGTGTTTTTTTTGTTTGGATCTTATATATCAGTTGCTCCTTGTTGCCAGGTGGATCGATCATTTGATTCGGTGCCTTCATATAGATGGGAGGCAAAGTCTAAAAGTGTTCCTAAATGCCTCATATCCCATTTGACCTTTATTCACTTATACGGATGTCCAGAAAATGAGCTGGAATTTATTGGGTATATTTTGCAACATGGACTTGTTTTGAAGACAATGATTGTTGATGAATATTGGCGAGACCAACCAGACCGCTGGATGAAAAAAATTTCAGATCTACCAAGAGGATCTGCCATGTGCCAAGTTAAATTTCTCTGA
Protein sequence

>MS.gene63095.t1

MSLVSRKWRNLWKNLEVFDFRDKCNEYSYQAPDDEFNEQFMLFTVFVNTVLALRRSRVVRKFRLSSDHIPNDPFYAYSVDTWLSIAIGPHLQEFHLTLFTAGAFTNLPLTLFSCSNLVLELLQMHHLNLSSMHILLSACPVLENLELFFSPESLDIIRVPSSLKKLKITVDNNVGAWLEIDAPGLKYLSLEGITFRDAAAVGNLHSVEEAYLDVFPTPKCESVEPLLNLLRALSGIKRLELHNSTPKWLFAAPILHFPEFHYLLHLKLKYPPFNSTFLFDVLQKCPMLETLIAFMFDIDMVDRSFDSVPSYRWEAKSKSVPKCLISHLTFIHLYGCPENELEFIGYILQHGLVLKTMIVDEYWRDQPDRWMKKISDLPRGSAMCQVKFL