AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39745.t1 MTR_7g056433 57.826 230 92 2 37 263 161 388 2.44e-78 242
MS.gene39745.t1 MTR_7g115270 53.219 233 101 1 37 261 167 399 1.38e-74 233
MS.gene39745.t1 MTR_5g013500 50.207 241 105 5 37 263 125 364 2.43e-67 213
MS.gene39745.t1 MTR_7g098510 42.739 241 122 5 32 263 157 390 6.66e-53 176
MS.gene39745.t1 MTR_1g041245 45.992 237 111 8 37 263 156 385 4.40e-49 166
MS.gene39745.t1 MTR_7g098570 43.777 233 123 4 32 259 159 388 1.36e-48 167
MS.gene39745.t1 MTR_7g033915 43.111 225 116 5 41 263 150 364 2.65e-46 159
MS.gene39745.t1 MTR_3g036250 43.777 233 100 6 37 261 154 363 3.49e-46 158
MS.gene39745.t1 MTR_7g056420 48.472 229 102 8 41 257 134 358 1.59e-45 163
MS.gene39745.t1 MTR_7g056430 48.472 229 102 8 41 257 134 358 1.87e-45 163
MS.gene39745.t1 MTR_7g032370 41.379 232 116 7 37 263 135 351 7.55e-45 154
MS.gene39745.t1 MTR_7g034120 39.506 243 117 8 33 264 85 308 5.42e-44 151
MS.gene39745.t1 MTR_7g098480 41.304 230 123 5 39 263 166 388 5.49e-44 155
MS.gene39745.t1 MTR_7g033990 41.991 231 115 7 32 256 158 375 1.37e-43 153
MS.gene39745.t1 MTR_3g108560 41.152 243 114 6 37 263 159 388 2.02e-43 152
MS.gene39745.t1 MTR_7g032380 41.631 233 96 8 37 263 157 355 3.17e-43 150
MS.gene39745.t1 MTR_7g034115 43.578 218 111 7 37 248 156 367 2.61e-41 146
MS.gene39745.t1 MTR_0543s0010 38.528 231 128 4 39 263 227 449 2.53e-40 145
MS.gene39745.t1 MTR_7g088260 40.343 233 129 6 37 264 235 462 4.15e-39 142
MS.gene39745.t1 MTR_3g087260 40.084 237 123 7 37 263 229 456 3.37e-38 139
MS.gene39745.t1 MTR_3g023630 38.819 237 127 6 31 262 149 372 4.40e-38 137
MS.gene39745.t1 MTR_0492s0020 38.426 216 119 4 39 248 227 434 7.00e-38 138
MS.gene39745.t1 MTR_3g109982 37.838 222 125 5 37 251 247 462 9.89e-36 135
MS.gene39745.t1 MTR_3g040700 38.249 217 103 5 37 246 192 384 6.21e-35 130
MS.gene39745.t1 MTR_5g008920 35.193 233 139 6 37 264 156 381 9.97e-34 126
MS.gene39745.t1 MTR_3g082890 34.138 290 151 9 5 264 205 484 9.98e-34 127
MS.gene39745.t1 MTR_3g108150 39.574 235 127 8 39 263 157 386 4.45e-33 124
MS.gene39745.t1 MTR_5g008950 34.615 234 138 6 37 264 141 365 6.53e-33 124
MS.gene39745.t1 MTR_2g020180 36.652 221 115 6 51 264 13 215 1.40e-32 119
MS.gene39745.t1 MTR_7g056277 36.245 229 137 4 37 264 408 628 3.78e-32 124
MS.gene39745.t1 MTR_3g467400 37.395 238 116 6 30 263 158 366 4.30e-32 121
MS.gene39745.t1 MTR_4g080610 35.983 239 134 5 37 263 125 356 1.20e-31 120
MS.gene39745.t1 MTR_7g056020 36.681 229 129 3 37 257 147 367 2.05e-31 122
MS.gene39745.t1 MTR_7g081290 48.252 143 60 6 129 264 121 256 2.48e-30 114
MS.gene39745.t1 MTR_5g012840 34.188 234 102 6 35 263 131 317 2.56e-30 115
MS.gene39745.t1 MTR_7g056287 34.934 229 140 4 37 264 152 372 2.79e-30 116
MS.gene39745.t1 MTR_3g115430 50.000 114 51 3 151 263 16 124 3.24e-30 110
MS.gene39745.t1 MTR_6g045333 33.621 232 147 5 39 263 214 445 4.32e-30 117
MS.gene39745.t1 MTR_7g026500 33.054 239 134 9 37 263 170 394 6.69e-30 116
MS.gene39745.t1 MTR_7g083740 32.677 254 138 9 29 263 127 366 1.84e-29 114
MS.gene39745.t1 MTR_5g045170 33.624 229 146 3 37 261 162 388 3.20e-29 114
MS.gene39745.t1 MTR_3g082890 31.206 282 129 6 41 264 167 441 8.12e-29 113
MS.gene39745.t1 MTR_3g107100 33.471 242 135 8 39 261 161 395 1.16e-28 112
MS.gene39745.t1 MTR_5g054920 35.000 180 109 3 56 231 2 177 1.78e-27 105
MS.gene39745.t1 MTR_5g007410 34.146 205 126 5 39 235 176 379 2.33e-27 109
MS.gene39745.t1 MTR_3g105060 34.468 235 136 6 31 263 154 372 5.88e-27 107
MS.gene39745.t1 MTR_2g007450 32.569 218 120 6 37 233 183 394 6.97e-27 108
MS.gene39745.t1 MTR_3g071850 33.816 207 128 6 38 236 176 381 7.24e-27 109
MS.gene39745.t1 MTR_7g114710 33.878 245 119 9 29 263 152 363 8.58e-27 107
MS.gene39745.t1 MTR_8g085430 40.462 173 87 5 89 248 143 312 1.34e-26 105
MS.gene39745.t1 MTR_1g066830 32.203 236 147 6 37 263 155 386 2.93e-26 105
MS.gene39745.t1 MTR_4g039440 30.612 245 144 7 37 264 177 412 4.93e-26 105
MS.gene39745.t1 MTR_7g007080 32.353 238 131 8 37 261 156 376 5.09e-26 105
MS.gene39745.t1 MTR_5g063950 32.189 233 150 3 37 264 133 362 9.61e-26 104
MS.gene39745.t1 MTR_1g085120 29.167 240 150 4 37 264 240 471 1.49e-25 105
MS.gene39745.t1 MTR_5g073420 30.901 233 142 6 37 264 162 380 1.50e-25 103
MS.gene39745.t1 MTR_5g058000 32.759 232 140 6 37 263 154 374 2.01e-25 103
MS.gene39745.t1 MTR_1g085120 29.167 240 150 4 37 264 315 546 2.14e-25 105
MS.gene39745.t1 MTR_2g008310 34.286 210 113 8 35 231 146 343 2.78e-25 103
MS.gene39745.t1 MTR_3g099830 31.799 239 130 8 39 261 150 371 3.55e-25 102
MS.gene39745.t1 MTR_2g008320 33.175 211 116 7 35 231 200 399 4.63e-25 103
MS.gene39745.t1 MTR_6g040270 29.958 237 147 6 37 264 155 381 4.76e-25 102
MS.gene39745.t1 MTR_1089s0010 30.802 237 143 7 37 264 155 379 8.05e-25 102
MS.gene39745.t1 MTR_6g022500 30.769 221 132 6 37 250 249 455 8.25e-25 102
MS.gene39745.t1 MTR_1g108800 32.911 237 133 7 37 261 117 339 1.21e-24 100
MS.gene39745.t1 MTR_1g053025 27.869 244 140 8 39 262 160 387 1.35e-24 101
MS.gene39745.t1 MTR_3g026920 29.876 241 134 9 41 262 179 403 1.59e-23 98.6
MS.gene39745.t1 MTR_1g107385 31.837 245 130 8 35 261 195 420 2.26e-23 98.6
MS.gene39745.t1 MTR_1g043170 56.790 81 32 1 183 263 10 87 2.70e-23 90.9
MS.gene39745.t1 MTR_2g005990 33.333 240 129 9 38 261 168 392 6.60e-23 97.1
MS.gene39745.t1 MTR_2g007400 28.807 243 141 7 39 261 176 406 1.22e-22 96.3
MS.gene39745.t1 MTR_5g058100 30.603 232 152 5 37 263 156 383 1.64e-22 95.5
MS.gene39745.t1 MTR_7g075820 30.736 231 138 7 38 261 176 391 1.86e-22 95.5
MS.gene39745.t1 MTR_2g007360 28.063 253 139 8 37 261 134 371 4.16e-22 94.4
MS.gene39745.t1 MTR_7g055943 30.962 239 145 7 39 264 190 421 5.50e-22 94.7
MS.gene39745.t1 MTR_5g073370 32.195 205 117 7 37 231 155 347 8.12e-22 93.6
MS.gene39745.t1 MTR_1g108820 30.000 240 146 8 37 261 151 383 2.83e-21 92.4
MS.gene39745.t1 MTR_5g083890 33.645 214 113 9 38 233 174 376 3.23e-21 92.8
MS.gene39745.t1 MTR_5g031970 31.111 225 133 4 37 261 151 353 3.68e-21 91.7
MS.gene39745.t1 MTR_7g060470 32.444 225 118 11 37 238 153 366 7.28e-21 91.3
MS.gene39745.t1 MTR_7g007340 34.634 205 107 7 39 231 140 329 1.38e-20 90.1
MS.gene39745.t1 MTR_3g107160 33.663 202 119 6 39 232 163 357 1.76e-20 90.1
MS.gene39745.t1 MTR_0009s0080 30.556 216 130 4 37 239 167 375 4.65e-20 89.0
MS.gene39745.t1 MTR_7g034110 31.500 200 91 5 35 232 156 311 8.69e-20 87.8
MS.gene39745.t1 MTR_3g107120 32.836 201 120 5 39 231 171 364 1.19e-19 87.8
MS.gene39745.t1 MTR_5g039470 28.571 210 121 6 37 228 130 328 1.41e-19 86.7
MS.gene39745.t1 MTR_2g036470 30.172 232 149 6 39 261 166 393 1.46e-19 87.4
MS.gene39745.t1 MTR_6g011460 30.672 238 145 6 37 264 194 421 1.51e-19 87.8
MS.gene39745.t1 MTR_5g045510 26.638 229 147 2 37 261 158 369 2.52e-19 86.7
MS.gene39745.t1 MTR_3g107940 40.336 119 59 2 133 248 88 197 3.09e-19 86.3
MS.gene39745.t1 MTR_6g022520 29.358 218 143 3 55 264 99 313 6.62e-19 84.7
MS.gene39745.t1 MTR_6g022360 27.004 237 152 6 39 263 180 407 8.81e-19 85.5
MS.gene39745.t1 MTR_3g071790 31.351 185 118 6 49 225 19 202 1.05e-18 82.0
MS.gene39745.t1 MTR_5g039450 26.971 241 144 7 37 262 133 356 1.25e-18 84.3
MS.gene39745.t1 MTR_7g022060 45.745 94 48 2 172 263 236 328 2.33e-18 83.6
MS.gene39745.t1 MTR_2g007090 29.918 244 131 8 30 263 80 293 3.70e-18 82.4
MS.gene39745.t1 MTR_6g029350 30.556 216 120 10 60 264 2 198 8.58e-18 80.5
MS.gene39745.t1 MTR_3g108140 45.679 81 44 0 183 263 67 147 1.57e-17 78.2
MS.gene39745.t1 MTR_7g021930 45.263 95 49 2 172 264 236 329 1.71e-17 80.9
MS.gene39745.t1 MTR_7g021970 45.263 95 49 2 172 264 236 329 1.71e-17 80.9
MS.gene39745.t1 MTR_2g007500 32.609 184 101 7 39 206 154 330 4.97e-17 79.7
MS.gene39745.t1 MTR_3g095630 32.653 147 87 4 87 231 15 151 9.98e-17 76.6
MS.gene39745.t1 MTR_2g007550 30.357 168 89 5 87 235 157 315 1.91e-16 78.2
MS.gene39745.t1 MTR_1g059860 28.000 225 120 7 37 224 92 311 4.05e-16 77.0
MS.gene39745.t1 MTR_8g062310 27.444 266 146 8 38 264 171 428 5.92e-16 77.4
MS.gene39745.t1 MTR_7g075800 28.090 267 135 12 35 257 174 427 7.72e-16 77.4
MS.gene39745.t1 MTR_6g044572 29.060 234 136 9 37 263 177 387 3.24e-15 75.1
MS.gene39745.t1 MTR_3g094980 33.962 106 60 2 151 246 33 138 4.28e-15 71.6
MS.gene39745.t1 MTR_6g044560 29.060 234 136 9 37 263 353 563 4.80e-15 74.7
MS.gene39745.t1 MTR_7g056280 27.556 225 125 8 60 264 367 573 5.50e-15 74.7
MS.gene39745.t1 MTR_1377s0010 34.234 111 66 3 132 240 31 136 7.68e-15 70.1
MS.gene39745.t1 MTR_5g065100 27.391 230 130 6 37 263 153 348 8.41e-15 73.9
MS.gene39745.t1 MTR_5g073340 32.759 174 105 5 37 200 129 300 4.40e-14 71.2
MS.gene39745.t1 MTR_8g070950 26.259 278 141 9 38 263 168 433 5.01e-14 71.6
MS.gene39745.t1 MTR_3g108560 38.158 152 65 6 37 172 159 297 9.01e-14 70.1
MS.gene39745.t1 MTR_7g007370 32.843 204 118 6 39 233 126 319 9.36e-14 70.5
MS.gene39745.t1 MTR_3g106960 38.532 109 60 4 127 231 66 171 1.06e-13 68.9
MS.gene39745.t1 MTR_4g096730 43.210 81 41 2 184 263 12 88 1.68e-13 65.5
MS.gene39745.t1 MTR_5g061410 33.333 144 90 2 37 176 130 271 1.97e-13 68.9
MS.gene39745.t1 MTR_4g098590 29.439 214 119 9 39 235 160 358 2.44e-13 69.3
MS.gene39745.t1 MTR_5g024060 32.407 108 72 1 128 235 76 182 2.97e-13 68.2
MS.gene39745.t1 MTR_2g007530 31.111 135 68 3 128 262 226 335 9.46e-13 67.4
MS.gene39745.t1 MTR_8g077460 27.333 150 103 3 114 263 231 374 3.37e-12 66.2
MS.gene39745.t1 MTR_3g110010 33.562 146 84 5 37 175 247 386 6.26e-12 65.9
MS.gene39745.t1 MTR_8g062010 29.412 136 91 3 129 263 298 429 8.86e-12 65.1
MS.gene39745.t1 MTR_3g113785 37.755 98 44 3 133 221 3 92 1.14e-11 60.5
MS.gene39745.t1 MTR_8g469020 25.468 267 138 9 52 264 192 451 1.54e-11 64.3
MS.gene39745.t1 MTR_8g062300 29.412 136 91 3 129 263 345 476 4.87e-11 62.8
MS.gene39745.t1 MTR_5g033200 33.000 100 63 2 133 232 52 147 5.94e-11 60.5
MS.gene39745.t1 MTR_5g008910 28.049 246 117 13 57 263 77 301 7.26e-11 61.6
MS.gene39745.t1 MTR_1g085120 29.054 148 87 3 37 172 327 468 7.56e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39745.t1 AT5G56370 25.362 276 153 6 38 263 148 420 5.48e-14 71.6
MS.gene39745.t1 AT5G56370 25.362 276 153 6 38 263 148 420 5.48e-14 71.6
MS.gene39745.t1 AT3G54910 27.338 278 135 11 38 263 110 372 1.19e-11 64.3
MS.gene39745.t1 AT3G54910 27.338 278 135 11 38 263 110 372 1.19e-11 64.3
MS.gene39745.t1 AT3G54910 27.338 278 135 11 38 263 110 372 1.19e-11 64.3

Find 57 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTAAATGCATGGAATT+TGG 0.120045 7.1:+45490548 MS.gene39745:CDS
AAGAGGGAGTTGTGGATAAT+TGG 0.248533 7.1:+45490465 MS.gene39745:CDS
AGCTGGGTTGAAAGGCATTC+TGG 0.263569 7.1:-45490506 None:intergenic
AATGATTAGATTTCGAAGTT+TGG 0.300529 7.1:-45490328 None:intergenic
GCTTTAAATGCATGGAATTT+GGG 0.312871 7.1:+45490549 MS.gene39745:CDS
TTTCGATGTTCTTGAAGATT+TGG 0.315877 7.1:+45489905 MS.gene39745:CDS
TTTCTCATTTGATGATTAGT+AGG 0.320115 7.1:+45490048 MS.gene39745:CDS
CTCAAAACATGTTCGCTTGA+AGG 0.330623 7.1:+45490527 MS.gene39745:CDS
ATGATTAGATTTCGAAGTTT+GGG 0.348309 7.1:-45490327 None:intergenic
TGTTAATGAAATCAGCTTCA+TGG 0.348888 7.1:+45490669 MS.gene39745:CDS
CTAGAGGAATTGCAAATAGA+TGG 0.356981 7.1:+45489954 MS.gene39745:CDS
ATGTTTGCTTTAATCAAATT+CGG 0.361688 7.1:-45490026 None:intergenic
AGGGAAGTCACTTGGTTTAG+TGG 0.375224 7.1:+45489986 MS.gene39745:CDS
AAGCTGATTTCATTAACATT+TGG 0.384691 7.1:-45490664 None:intergenic
TATTTGCAATTCCTCTAGAA+TGG 0.389646 7.1:-45489949 None:intergenic
GATTTGGTAAAGCTTCTATC+AGG 0.394092 7.1:+45489921 MS.gene39745:CDS
GTAAACTCTTATTTAAATGA+TGG 0.404168 7.1:+45490711 MS.gene39745:CDS
ATTGATATCGTGTGAGTAAT+GGG 0.412796 7.1:-45489667 None:intergenic
TTTCATTAACATTTGGTACT+TGG 0.421097 7.1:-45490657 None:intergenic
TTGTGTTTACTTTGCTTCGC+AGG 0.442108 7.1:+45490081 MS.gene39745:CDS
AGGCATTCTGGAATAATTGT+TGG 0.444056 7.1:-45490494 None:intergenic
ATTTGCAATTCCTCTAGAAT+GGG 0.471933 7.1:-45489948 None:intergenic
TGAATTGTTGACAGAAGTCT+AGG 0.474487 7.1:+45490438 MS.gene39745:intron
TGCTTCAACGCTGTGAGAAG+TGG 0.492985 7.1:+45490274 MS.gene39745:CDS
TAGGATTGAAGAGGGAGTTG+TGG 0.495134 7.1:+45490457 MS.gene39745:CDS
GTACTTGGCATTTAAATCTA+CGG 0.498335 7.1:-45490642 None:intergenic
TGTATCTCACTGCAGGACAT+AGG 0.498962 7.1:+45490198 MS.gene39745:intron
GATTGATATCGTGTGAGTAA+TGG 0.501484 7.1:-45489668 None:intergenic
TTGCAAATAGATGGGGTACA+TGG 0.512169 7.1:+45489963 MS.gene39745:CDS
TTTAAGGAAAACCATGCTGC+TGG 0.513860 7.1:-45489748 None:intergenic
TAGAGGAATTGCAAATAGAT+GGG 0.517788 7.1:+45489955 MS.gene39745:CDS
TGCTGGATATTTCGAGATTG+AGG 0.518337 7.1:-45489731 None:intergenic
GGCATTTAAATCTACGGAAG+AGG 0.520093 7.1:-45490636 None:intergenic
TTCTCATTTGATGATTAGTA+GGG 0.520724 7.1:+45490049 MS.gene39745:CDS
GCTTGAAGGCTTTAAATGCA+TGG 0.521098 7.1:+45490541 MS.gene39745:CDS
GTACATGGAGGGAAGTCACT+TGG 0.536365 7.1:+45489978 MS.gene39745:CDS
TGAAATCAGCTTCATGGACA+AGG 0.537194 7.1:+45490675 MS.gene39745:CDS
GAAGTTTGGGACAACGTTTG+AGG 0.540821 7.1:-45490314 None:intergenic
GGGAGTTGTGGATAATTGGA+TGG 0.542611 7.1:+45490469 MS.gene39745:CDS
ACAGAAGTCTAGGATTGAAG+AGG 0.548692 7.1:+45490448 MS.gene39745:intron
AACGCTGTGAGAAGTGGAAG+TGG 0.552449 7.1:+45490280 MS.gene39745:CDS
TCGAAATCTAATCATTCATG+AGG 0.557538 7.1:+45490335 MS.gene39745:CDS
CAGAAGTCTAGGATTGAAGA+GGG 0.558293 7.1:+45490449 MS.gene39745:intron
TGTGTTTACTTTGCTTCGCA+GGG 0.569835 7.1:+45490082 MS.gene39745:CDS
TCATTTGATGATTAGTAGGG+AGG 0.572505 7.1:+45490052 MS.gene39745:CDS
GTTTCAAAATCTAATCCACA+TGG 0.586722 7.1:+45490239 MS.gene39745:CDS
AAATAGATGGGGTACATGGA+GGG 0.592790 7.1:+45489967 MS.gene39745:CDS
CAAATAGATGGGGTACATGG+AGG 0.601670 7.1:+45489966 MS.gene39745:CDS
GATTCCTCCTCGTTGAGCAG+AGG 0.618410 7.1:-45489703 None:intergenic
ATCAGGATGTCCCATTCTAG+AGG 0.622759 7.1:+45489938 MS.gene39745:CDS
GAAATCAGCTTCATGGACAA+GGG 0.624249 7.1:+45490676 MS.gene39745:CDS
TGTGAGTAATGGGTAGAAGC+TGG 0.640754 7.1:-45489657 None:intergenic
ACGCTGTGAGAAGTGGAAGT+GGG 0.649814 7.1:+45490281 MS.gene39745:CDS
AGAGGAATTGCAAATAGATG+GGG 0.659055 7.1:+45489956 MS.gene39745:CDS
TCTCGAAATATCCAGCAGCA+TGG 0.675557 7.1:+45489737 MS.gene39745:CDS
TATGCCTCTGCTCAACGAGG+AGG 0.681876 7.1:+45489699 MS.gene39745:CDS
GTCTATGCCTCTGCTCAACG+AGG 0.693871 7.1:+45489696 MS.gene39745:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTGAAATATTTAT+TGG - chr7.1:45490154-45490173 None:intergenic 10.0%
!! TTTGTTAATAAAAAATAAAG+AGG - chr7.1:45490413-45490432 None:intergenic 10.0%
!! AAAAATTATGTGTCTAATGT+TGG + chr7.1:45490106-45490125 MS.gene39745:CDS 20.0%
!! ATGTTTGCTTTAATCAAATT+CGG - chr7.1:45490029-45490048 None:intergenic 20.0%
!!! ATTGTCAATTATTTTCTCTT+TGG + chr7.1:45490365-45490384 MS.gene39745:intron 20.0%
! AATGATTAGATTTCGAAGTT+TGG - chr7.1:45490331-45490350 None:intergenic 25.0%
! ATGATTAGATTTCGAAGTTT+GGG - chr7.1:45490330-45490349 None:intergenic 25.0%
! TTTCATTAACATTTGGTACT+TGG - chr7.1:45490660-45490679 None:intergenic 25.0%
!! AAGCTGATTTCATTAACATT+TGG - chr7.1:45490667-45490686 None:intergenic 25.0%
!! TAGTAGGTAAATTGACTTTA+AGG - chr7.1:45489767-45489786 None:intergenic 25.0%
!! TTCTCATTTGATGATTAGTA+GGG + chr7.1:45490049-45490068 MS.gene39745:CDS 25.0%
!! TTTCTCATTTGATGATTAGT+AGG + chr7.1:45490048-45490067 MS.gene39745:CDS 25.0%
!!! GATTTTGAAACAAAGGAAAA+TGG - chr7.1:45490230-45490249 None:intergenic 25.0%
!!! TGGATTAGATTTTGAAACAA+AGG - chr7.1:45490237-45490256 None:intergenic 25.0%
AAAGAGGTGAAAAAATGTTG+AGG - chr7.1:45490397-45490416 None:intergenic 30.0%
ATTGATATCGTGTGAGTAAT+GGG - chr7.1:45489670-45489689 None:intergenic 30.0%
CCTAAAAACTCTTCATCTAA+GGG + chr7.1:45489875-45489894 MS.gene39745:CDS 30.0%
GTACTTGGCATTTAAATCTA+CGG - chr7.1:45490645-45490664 None:intergenic 30.0%
GTTTCAAAATCTAATCCACA+TGG + chr7.1:45490239-45490258 MS.gene39745:CDS 30.0%
TAGAGGAATTGCAAATAGAT+GGG + chr7.1:45489955-45489974 MS.gene39745:CDS 30.0%
TCCTAAAAACTCTTCATCTA+AGG + chr7.1:45489874-45489893 MS.gene39745:CDS 30.0%
TCGAAATCTAATCATTCATG+AGG + chr7.1:45490335-45490354 MS.gene39745:CDS 30.0%
TGTTAATGAAATCAGCTTCA+TGG + chr7.1:45490669-45490688 MS.gene39745:CDS 30.0%
TTGTCGTTCTTCATTTGAAA+GGG + chr7.1:45489808-45489827 MS.gene39745:intron 30.0%
TTTCAAATGAAGAACGACAA+GGG - chr7.1:45489808-45489827 None:intergenic 30.0%
TTTCGATGTTCTTGAAGATT+TGG + chr7.1:45489905-45489924 MS.gene39745:CDS 30.0%
! GCTTTAAATGCATGGAATTT+GGG + chr7.1:45490549-45490568 MS.gene39745:CDS 30.0%
! TATTTGCAATTCCTCTAGAA+TGG - chr7.1:45489952-45489971 None:intergenic 30.0%
!! ATTTGCAATTCCTCTAGAAT+GGG - chr7.1:45489951-45489970 None:intergenic 30.0%
AGAGGAATTGCAAATAGATG+GGG + chr7.1:45489956-45489975 MS.gene39745:CDS 35.0%
CTACAGCTGAAAATACTAGT+AGG - chr7.1:45489783-45489802 None:intergenic 35.0%
CTAGAGGAATTGCAAATAGA+TGG + chr7.1:45489954-45489973 MS.gene39745:CDS 35.0%
CTTGTCGTTCTTCATTTGAA+AGG + chr7.1:45489807-45489826 MS.gene39745:intron 35.0%
CTTTCAAATGAAGAACGACA+AGG - chr7.1:45489809-45489828 None:intergenic 35.0%
GATTGATATCGTGTGAGTAA+TGG - chr7.1:45489671-45489690 None:intergenic 35.0%
GCATAAAAAGAAGTTCCATG+TGG - chr7.1:45490257-45490276 None:intergenic 35.0%
TGAATTGTTGACAGAAGTCT+AGG + chr7.1:45490438-45490457 MS.gene39745:intron 35.0%
! CCCTTAGATGAAGAGTTTTT+AGG - chr7.1:45489878-45489897 None:intergenic 35.0%
! CTACTAGTATTTTCAGCTGT+AGG + chr7.1:45489781-45489800 MS.gene39745:intron 35.0%
! GATTTGGTAAAGCTTCTATC+AGG + chr7.1:45489921-45489940 MS.gene39745:CDS 35.0%
! TAACTTTTGTATCTCACTGC+AGG + chr7.1:45490191-45490210 MS.gene39745:intron 35.0%
! TCATTTGATGATTAGTAGGG+AGG + chr7.1:45490052-45490071 MS.gene39745:CDS 35.0%
!! AGATGAAGAGTTTTTAGGAG+AGG - chr7.1:45489873-45489892 None:intergenic 35.0%
!! AGGCATTCTGGAATAATTGT+TGG - chr7.1:45490497-45490516 None:intergenic 35.0%
!! GATGAAGAGTTTTTAGGAGA+GGG - chr7.1:45489872-45489891 None:intergenic 35.0%
!! GGCTTTAAATGCATGGAATT+TGG + chr7.1:45490548-45490567 MS.gene39745:CDS 35.0%
AAATAGATGGGGTACATGGA+GGG + chr7.1:45489967-45489986 MS.gene39745:CDS 40.0%
AAGAGGGAGTTGTGGATAAT+TGG + chr7.1:45490465-45490484 MS.gene39745:CDS 40.0%
CTCAAAACATGTTCGCTTGA+AGG + chr7.1:45490527-45490546 MS.gene39745:CDS 40.0%
GAAATCAGCTTCATGGACAA+GGG + chr7.1:45490676-45490695 MS.gene39745:CDS 40.0%
GGCATTTAAATCTACGGAAG+AGG - chr7.1:45490639-45490658 None:intergenic 40.0%
TGAAATCAGCTTCATGGACA+AGG + chr7.1:45490675-45490694 MS.gene39745:CDS 40.0%
TGCTGGATATTTCGAGATTG+AGG - chr7.1:45489734-45489753 None:intergenic 40.0%
TGTGTTTACTTTGCTTCGCA+GGG + chr7.1:45490082-45490101 MS.gene39745:CDS 40.0%
TTGCAAATAGATGGGGTACA+TGG + chr7.1:45489963-45489982 MS.gene39745:CDS 40.0%
TTGTGTTTACTTTGCTTCGC+AGG + chr7.1:45490081-45490100 MS.gene39745:CDS 40.0%
TTTAAGGAAAACCATGCTGC+TGG - chr7.1:45489751-45489770 None:intergenic 40.0%
! ACAGAAGTCTAGGATTGAAG+AGG + chr7.1:45490448-45490467 MS.gene39745:intron 40.0%
! CAGAAGTCTAGGATTGAAGA+GGG + chr7.1:45490449-45490468 MS.gene39745:intron 40.0%
!! AAGCGAACATGTTTTGAGCT+GGG - chr7.1:45490525-45490544 None:intergenic 40.0%
!! ATGTTTTGAGCTGGGTTGAA+AGG - chr7.1:45490517-45490536 None:intergenic 40.0%
!! GCTTGAAGGCTTTAAATGCA+TGG + chr7.1:45490541-45490560 MS.gene39745:CDS 40.0%
AGGGAAGTCACTTGGTTTAG+TGG + chr7.1:45489986-45490005 MS.gene39745:CDS 45.0%
ATCAGGATGTCCCATTCTAG+AGG + chr7.1:45489938-45489957 MS.gene39745:CDS 45.0%
CAAATAGATGGGGTACATGG+AGG + chr7.1:45489966-45489985 MS.gene39745:CDS 45.0%
GGGAGTTGTGGATAATTGGA+TGG + chr7.1:45490469-45490488 MS.gene39745:CDS 45.0%
TAGGATTGAAGAGGGAGTTG+TGG + chr7.1:45490457-45490476 MS.gene39745:CDS 45.0%
TCTCGAAATATCCAGCAGCA+TGG + chr7.1:45489737-45489756 MS.gene39745:CDS 45.0%
TGTATCTCACTGCAGGACAT+AGG + chr7.1:45490198-45490217 MS.gene39745:intron 45.0%
! GAAGTTTGGGACAACGTTTG+AGG - chr7.1:45490317-45490336 None:intergenic 45.0%
!! CAAGCGAACATGTTTTGAGC+TGG - chr7.1:45490526-45490545 None:intergenic 45.0%
!! TGTGAGTAATGGGTAGAAGC+TGG - chr7.1:45489660-45489679 None:intergenic 45.0%
AACGCTGTGAGAAGTGGAAG+TGG + chr7.1:45490280-45490299 MS.gene39745:CDS 50.0%
ACGCTGTGAGAAGTGGAAGT+GGG + chr7.1:45490281-45490300 MS.gene39745:CDS 50.0%
GTACATGGAGGGAAGTCACT+TGG + chr7.1:45489978-45489997 MS.gene39745:CDS 50.0%
TGCTTCAACGCTGTGAGAAG+TGG + chr7.1:45490274-45490293 MS.gene39745:CDS 50.0%
!! AGCTGGGTTGAAAGGCATTC+TGG - chr7.1:45490509-45490528 None:intergenic 50.0%
GATTCCTCCTCGTTGAGCAG+AGG - chr7.1:45489706-45489725 None:intergenic 55.0%
GTCTATGCCTCTGCTCAACG+AGG + chr7.1:45489696-45489715 MS.gene39745:CDS 55.0%
TATGCCTCTGCTCAACGAGG+AGG + chr7.1:45489699-45489718 MS.gene39745:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 45489650 45490730 45489650 ID=MS.gene39745
chr7.1 mRNA 45489650 45490730 45489650 ID=MS.gene39745.t1;Parent=MS.gene39745
chr7.1 exon 45489650 45489758 45489650 ID=MS.gene39745.t1.exon1;Parent=MS.gene39745.t1
chr7.1 CDS 45489650 45489758 45489650 ID=cds.MS.gene39745.t1;Parent=MS.gene39745.t1
chr7.1 exon 45489865 45490127 45489865 ID=MS.gene39745.t1.exon2;Parent=MS.gene39745.t1
chr7.1 CDS 45489865 45490127 45489865 ID=cds.MS.gene39745.t1;Parent=MS.gene39745.t1
chr7.1 exon 45490213 45490356 45490213 ID=MS.gene39745.t1.exon3;Parent=MS.gene39745.t1
chr7.1 CDS 45490213 45490356 45490213 ID=cds.MS.gene39745.t1;Parent=MS.gene39745.t1
chr7.1 exon 45490452 45490730 45490452 ID=MS.gene39745.t1.exon4;Parent=MS.gene39745.t1
chr7.1 CDS 45490452 45490730 45490452 ID=cds.MS.gene39745.t1;Parent=MS.gene39745.t1
Gene Sequence

>MS.gene39745

ATGTTCACCAGCTTCTACCCATTACTCACACGATATCAATCGATTTGTCTATGCCTCTGCTCAACGAGGAGGAATCGAGAGCCTCAATCTCGAAATATCCAGCAGCATGGTTTTCCTTAAAGTCAATTTACCTACTAGTATTTTCAGCTGTAGGACCCTTGTCGTTCTTCATTTGAAAGGGTTAAGAGTGAATGATCTTTCTCAATTGATTGTAGATTTCCCTCTCCTAAAAACTCTTCATCTAAGGGTTATGCGTTTCGATGTTCTTGAAGATTTGGTAAAGCTTCTATCAGGATGTCCCATTCTAGAGGAATTGCAAATAGATGGGGTACATGGAGGGAAGTCACTTGGTTTAGTGGAAAATTCTCAAAGCTTACCGAATTTGATTAAAGCAAACATTTCTCATTTGATGATTAGTAGGGAGGCGAGTGTTGTGTTTACTTTGCTTCGCAGGGCAAAAATTATGTGTCTAATGTTGGTAAGAATATTATATGACTCTCTCCAATAAATATTTCAATGAAATTAGTGTTTATTTCATTTCTAACTTTTGTATCTCACTGCAGGACATAGGTTATATCCATTTTCCTTTGTTTCAAAATCTAATCCACATGGAACTTCTTTTTATGCTTCAACGCTGTGAGAAGTGGAAGTGGGTTATAGAAGTCCTCAAACGTTGTCCCAAACTTCGAAATCTAATCATTCATGAGGTTTTGTTATTGTCAATTATTTTCTCTTTGGTTTTTACCTCAACATTTTTTCACCTCTTTATTTTTTATTAACAAAATATTTGAATTGTTGACAGAAGTCTAGGATTGAAGAGGGAGTTGTGGATAATTGGATGGATCCAACAATTATTCCAGAATGCCTTTCAACCCAGCTCAAAACATGTTCGCTTGAAGGCTTTAAATGCATGGAATTTGGGATTCAATTTGCAAAATATATTATGCAGAATTCAAAAGTACTGAACATCATGTCAATCAAGAGTGCCTCTTCCGTAGATTTAAATGCCAAGTACCAAATGTTAATGAAATCAGCTTCATGGACAAGGGCTTCTACAAAATGTAAACTCTTATTTAAATGA
Protein sequence

>MS.gene39745.t1

MFTSFYPLLTRYQSICLCLCSTRRNREPQSRNIQQHDFPLLKTLHLRVMRFDVLEDLVKLLSGCPILEELQIDGVHGGKSLGLVENSQSLPNLIKANISHLMISREASVVFTLLRRAKIMCLMLDIGYIHFPLFQNLIHMELLFMLQRCEKWKWVIEVLKRCPKLRNLIIHEKSRIEEGVVDNWMDPTIIPECLSTQLKTCSLEGFKCMEFGIQFAKYIMQNSKVLNIMSIKSASSVDLNAKYQMLMKSASWTRASTKCKLLFK