AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98324

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98324.t1 MTR_7g115270 60.593 236 85 3 4 231 133 368 4.70e-85 258
MS.gene98324.t1 MTR_7g056430 64.017 239 53 4 1 231 118 331 3.25e-82 266
MS.gene98324.t1 MTR_7g056420 64.017 239 53 4 1 231 118 331 3.32e-82 266
MS.gene98324.t1 MTR_5g013500 50.926 216 95 4 27 231 116 331 2.63e-64 204
MS.gene98324.t1 MTR_7g056433 51.131 221 99 4 5 221 130 345 2.49e-61 197
MS.gene98324.t1 MTR_7g056417 56.442 163 59 3 1 156 1 158 1.75e-49 159
MS.gene98324.t1 MTR_7g098570 41.935 217 112 7 5 217 135 341 7.98e-40 143
MS.gene98324.t1 MTR_7g098510 39.583 240 119 10 4 231 132 357 5.24e-36 131
MS.gene98324.t1 MTR_3g036250 37.447 235 115 8 7 231 124 336 5.37e-36 130
MS.gene98324.t1 MTR_7g034120 37.991 229 122 9 10 231 64 279 1.26e-34 125
MS.gene98324.t1 MTR_3g040700 39.352 216 102 8 7 216 162 354 4.00e-34 127
MS.gene98324.t1 MTR_7g098480 39.450 218 116 8 4 217 132 337 2.19e-33 125
MS.gene98324.t1 MTR_7g033990 40.969 227 112 9 10 230 139 349 5.74e-32 121
MS.gene98324.t1 MTR_3g023630 34.167 240 135 9 1 231 119 344 1.02e-30 117
MS.gene98324.t1 MTR_7g032370 36.019 211 108 6 7 212 108 296 3.30e-30 115
MS.gene98324.t1 MTR_7g007080 36.967 211 115 7 7 211 129 327 1.65e-29 114
MS.gene98324.t1 MTR_7g033915 38.326 227 104 10 10 231 137 332 2.12e-29 113
MS.gene98324.t1 MTR_5g008950 32.489 237 138 10 4 231 110 333 1.63e-28 111
MS.gene98324.t1 MTR_1g041245 38.889 216 108 9 7 212 129 330 6.32e-28 109
MS.gene98324.t1 MTR_3g087260 37.131 237 125 10 6 231 200 423 6.77e-28 110
MS.gene98324.t1 MTR_3g087260 38.614 101 59 2 5 104 112 210 9.93e-12 64.3
MS.gene98324.t1 MTR_3g082890 35.772 246 133 8 7 231 212 453 1.05e-26 107
MS.gene98324.t1 MTR_7g032380 35.238 210 93 8 7 212 130 300 4.35e-26 104
MS.gene98324.t1 MTR_5g008920 32.759 232 140 9 6 231 128 349 5.11e-26 104
MS.gene98324.t1 MTR_1g107385 35.780 218 120 8 7 215 166 372 1.22e-25 103
MS.gene98324.t1 MTR_0492s0020 34.177 237 125 10 7 231 199 416 5.66e-25 102
MS.gene98324.t1 MTR_0543s0010 34.177 237 125 10 7 231 199 416 7.84e-25 102
MS.gene98324.t1 MTR_2g008320 33.654 208 128 5 6 211 172 371 1.27e-24 101
MS.gene98324.t1 MTR_2g007500 31.982 222 122 6 7 211 121 330 1.42e-23 97.1
MS.gene98324.t1 MTR_2g007450 32.589 224 122 7 7 210 152 366 2.33e-23 97.4
MS.gene98324.t1 MTR_3g108560 36.036 222 126 7 11 224 135 348 2.79e-23 97.1
MS.gene98324.t1 MTR_3g107100 35.945 217 124 8 1 212 126 332 4.32e-23 96.7
MS.gene98324.t1 MTR_3g105060 31.925 213 125 7 5 216 131 324 6.91e-23 95.9
MS.gene98324.t1 MTR_6g045333 33.790 219 130 6 5 215 181 392 1.32e-22 95.5
MS.gene98324.t1 MTR_5g045170 30.802 237 144 6 5 231 131 357 1.66e-22 95.1
MS.gene98324.t1 MTR_7g056020 35.377 212 107 7 11 211 124 316 2.79e-22 95.5
MS.gene98324.t1 MTR_7g088260 33.175 211 128 5 5 212 206 406 3.60e-22 94.4
MS.gene98324.t1 MTR_5g083890 33.937 221 123 8 7 215 142 351 4.93e-22 94.4
MS.gene98324.t1 MTR_7g034115 34.742 213 118 8 7 212 129 327 5.07e-22 93.6
MS.gene98324.t1 MTR_3g071850 31.081 222 132 4 5 215 144 355 7.76e-22 94.0
MS.gene98324.t1 MTR_3g026920 30.531 226 114 7 2 211 159 357 2.02e-21 92.0
MS.gene98324.t1 MTR_5g007410 29.386 228 144 6 5 221 143 364 2.97e-21 92.0
MS.gene98324.t1 MTR_1g053025 29.018 224 138 6 1 212 123 337 4.86e-21 90.9
MS.gene98324.t1 MTR_2g008310 32.692 208 129 6 6 211 118 316 6.14e-21 90.5
MS.gene98324.t1 MTR_3g109982 36.667 210 116 8 7 211 220 417 7.59e-21 91.3
MS.gene98324.t1 MTR_3g467400 31.799 239 114 10 5 231 132 333 9.12e-21 89.7
MS.gene98324.t1 MTR_3g082890 31.449 283 132 9 7 231 132 410 1.02e-20 90.1
MS.gene98324.t1 MTR_3g107120 34.135 208 124 6 7 211 142 339 2.45e-20 89.0
MS.gene98324.t1 MTR_7g081290 39.310 145 76 5 98 231 84 227 4.20e-20 86.3
MS.gene98324.t1 MTR_7g056447 62.687 67 25 0 1 67 119 185 6.65e-20 86.3
MS.gene98324.t1 MTR_7g056287 31.858 226 133 9 11 231 129 338 1.17e-19 86.7
MS.gene98324.t1 MTR_7g056277 31.878 229 135 9 11 234 385 597 1.41e-19 87.4
MS.gene98324.t1 MTR_3g108150 34.842 221 117 8 3 211 124 329 1.57e-19 86.7
MS.gene98324.t1 MTR_7g060470 30.705 241 142 10 8 231 126 358 4.16e-19 85.5
MS.gene98324.t1 MTR_7g075820 28.972 214 135 6 7 215 142 343 5.14e-19 85.1
MS.gene98324.t1 MTR_0009s0080 28.992 238 151 6 5 231 136 366 9.08e-19 84.7
MS.gene98324.t1 MTR_7g114710 32.227 211 97 8 15 216 141 314 1.25e-18 84.0
MS.gene98324.t1 MTR_5g073370 32.367 207 125 7 5 208 126 320 3.25e-18 82.8
MS.gene98324.t1 MTR_3g107160 31.905 210 116 7 7 206 134 326 3.34e-18 82.8
MS.gene98324.t1 MTR_2g007400 32.547 212 121 8 10 211 148 347 8.42e-18 81.6
MS.gene98324.t1 MTR_4g098590 32.883 222 113 9 7 211 127 329 8.54e-18 81.6
MS.gene98324.t1 MTR_6g022500 28.638 213 133 5 6 212 220 419 1.05e-17 81.6
MS.gene98324.t1 MTR_7g026500 30.876 217 127 9 4 212 139 340 2.16e-17 80.5
MS.gene98324.t1 MTR_5g012840 31.220 205 89 6 10 212 109 263 2.78e-17 79.7
MS.gene98324.t1 MTR_4g080610 31.731 208 122 6 35 230 124 323 3.60e-17 79.7
MS.gene98324.t1 MTR_7g083740 31.606 193 107 7 29 211 135 312 1.12e-16 78.2
MS.gene98324.t1 MTR_3g115430 48.718 78 35 2 151 224 11 87 1.13e-16 73.9
MS.gene98324.t1 MTR_7g034110 32.243 214 81 7 10 215 134 291 2.50e-16 77.4
MS.gene98324.t1 MTR_1g108820 29.907 214 127 7 5 206 121 323 3.46e-16 77.0
MS.gene98324.t1 MTR_3g099830 29.954 217 124 8 7 211 118 318 4.96e-16 76.6
MS.gene98324.t1 MTR_2g020180 31.088 193 102 6 55 230 5 183 5.02e-16 74.3
MS.gene98324.t1 MTR_5g073420 28.099 242 142 9 1 233 127 345 7.01e-16 76.3
MS.gene98324.t1 MTR_3g108560 38.012 171 94 5 11 177 135 297 1.70e-15 74.7
MS.gene98324.t1 MTR_1g085120 29.665 209 130 6 11 212 291 489 1.90e-15 75.5
MS.gene98324.t1 MTR_1g085120 29.665 209 130 6 11 212 216 414 1.95e-15 75.1
MS.gene98324.t1 MTR_1g108800 32.569 218 114 7 1 206 84 280 2.64e-15 74.3
MS.gene98324.t1 MTR_7g055943 31.944 216 126 7 6 214 159 360 5.35e-15 73.9
MS.gene98324.t1 MTR_5g073340 28.571 210 134 7 4 205 99 300 7.66e-14 69.7
MS.gene98324.t1 MTR_5g063950 27.358 212 138 6 10 215 107 308 1.24e-13 69.7
MS.gene98324.t1 MTR_5g058100 32.195 205 116 9 10 206 131 320 1.28e-13 69.7
MS.gene98324.t1 MTR_4g039440 30.952 210 135 6 6 211 148 351 1.32e-13 69.7
MS.gene98324.t1 MTR_6g013160 31.980 197 107 9 5 177 159 352 1.64e-13 69.3
MS.gene98324.t1 MTR_2g007360 28.829 222 112 8 16 211 115 316 1.71e-13 69.3
MS.gene98324.t1 MTR_5g039470 29.565 230 141 9 5 221 99 320 2.37e-13 68.6
MS.gene98324.t1 MTR_5g031970 29.954 217 112 8 5 215 120 302 2.47e-13 68.6
MS.gene98324.t1 MTR_3g110010 35.714 182 100 8 7 183 220 389 2.64e-13 69.3
MS.gene98324.t1 MTR_6g040270 27.830 212 141 7 1 212 122 321 2.35e-12 65.9
MS.gene98324.t1 MTR_2g005990 28.372 215 133 7 6 211 137 339 2.46e-12 65.9
MS.gene98324.t1 MTR_7g007340 29.384 211 126 8 7 211 108 301 3.45e-12 65.5
MS.gene98324.t1 MTR_3g113785 44.872 78 32 3 155 221 14 91 5.70e-12 60.8
MS.gene98324.t1 MTR_1g108820 30.270 185 110 6 5 177 121 298 9.82e-12 63.9
MS.gene98324.t1 MTR_1g066830 27.778 216 141 6 6 215 126 332 1.18e-11 63.9
MS.gene98324.t1 MTR_6g022360 28.507 221 132 7 6 215 149 354 1.32e-11 63.9
MS.gene98324.t1 MTR_7g021950 30.244 205 128 7 7 204 164 360 1.52e-11 63.9
MS.gene98324.t1 MTR_1089s0010 26.087 230 145 8 10 231 130 342 1.53e-11 63.5
MS.gene98324.t1 MTR_5g058000 31.019 216 119 8 5 212 124 317 2.01e-11 63.2
MS.gene98324.t1 MTR_7g021990 30.244 205 128 7 7 204 164 360 2.02e-11 63.2
MS.gene98324.t1 MTR_7g022105 28.095 210 140 5 7 211 165 368 2.35e-11 63.2
MS.gene98324.t1 MTR_5g061410 29.240 171 111 5 10 177 104 267 2.91e-11 62.0
MS.gene98324.t1 MTR_8g085430 53.333 60 22 2 159 212 213 272 2.92e-11 62.4
MS.gene98324.t1 MTR_1g085120 31.034 174 105 5 11 177 303 468 3.19e-11 62.8
MS.gene98324.t1 MTR_7g075800 23.140 242 143 8 7 215 141 372 7.72e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGCAATTCCTCTAAAA+TGG 0.161153 7.2:-47147622 None:intergenic
CTCAAAACATGCTTGCTTAA+AGG 0.172644 7.2:+47148311 MS.gene98324:CDS
ATATTTATTTGTACATAATA+AGG 0.228390 7.2:+47147647 MS.gene98324:CDS
ACACTTGTCTGGTGTACTTT+TGG 0.230385 7.2:+47147560 MS.gene98324:CDS
AGTTGTGTTGAAAGGCATTC+TGG 0.307205 7.2:-47148290 None:intergenic
TATATCATCCAGCTTCTATC+TGG 0.335498 7.2:+47147594 MS.gene98324:CDS
TCTCACAATGATTACGCTTA+AGG 0.361402 7.2:-47148061 None:intergenic
TCAGCATTTGCGTGCAGAAT+TGG 0.379441 7.2:+47147797 MS.gene98324:CDS
TTATGCTCACTTTGCTCTGC+AGG 0.382170 7.2:+47147766 MS.gene98324:CDS
AGGCATTCTGGAATATTTGC+TGG 0.397575 7.2:-47148278 None:intergenic
AGACCTTTCTCAACTGGTTG+TGG 0.399921 7.2:+47147515 MS.gene98324:CDS
TCAAAATCTTACCATTCATC+AGG 0.400799 7.2:+47148127 MS.gene98324:CDS
AGTGAAAGACCTTTCTCAAC+TGG 0.408908 7.2:+47147509 MS.gene98324:CDS
TGTTGACAGGACTTGGAGAA+TGG 0.438134 7.2:+47148227 MS.gene98324:intron
GCTTGCAATTCCTCTAAAAT+GGG 0.458474 7.2:-47147621 None:intergenic
GATTGCGGAACTTAAGATGT+TGG 0.471118 7.2:-47148019 None:intergenic
AGAGGAAGTTGTGGATAGTT+GGG 0.474055 7.2:+47148250 MS.gene98324:CDS
GAGAGGAAGTTGTGGATAGT+TGG 0.479744 7.2:+47148249 MS.gene98324:CDS
GGTAAGATCTGATGGTTTCA+AGG 0.487990 7.2:+47148585 MS.gene98324:CDS
AACCTCAATCTTGAAATGTC+CGG 0.492837 7.2:+47147417 None:intergenic
AGCGTAATCATTGTGAGAAG+TGG 0.507662 7.2:+47148066 MS.gene98324:CDS
CATCAATAAAACCTGATGAA+TGG 0.519118 7.2:-47148138 None:intergenic
ATCTGATGGTTTCAAGGGCA+TGG 0.524477 7.2:+47148591 MS.gene98324:CDS
TGGGACATCCAGATAGAAGC+TGG 0.524755 7.2:-47147602 None:intergenic
TCGTTGTTCTTCATTTGCAA+CGG 0.536924 7.2:+47147481 MS.gene98324:CDS
AATCCACAACCAGTTGAGAA+AGG 0.541657 7.2:-47147518 None:intergenic
TATTTGTACATAATAAGGAA+TGG 0.542284 7.2:+47147652 MS.gene98324:CDS
ATCATTGTGAGAAGTGGATC+TGG 0.545999 7.2:+47148072 MS.gene98324:CDS
TATGCAATGGTAAGATCTGA+TGG 0.561128 7.2:+47148577 MS.gene98324:CDS
TATGCTCACTTTGCTCTGCA+GGG 0.565940 7.2:+47147767 MS.gene98324:CDS
CTTAAGGATAAGCTCCATGT+TGG 0.567493 7.2:-47148045 None:intergenic
ATTAGATTCTACATATGCAA+TGG 0.573407 7.2:+47148564 MS.gene98324:intron
GGAGAATGGAGAGGAAGTTG+TGG 0.577606 7.2:+47148241 MS.gene98324:CDS
GTAAGATCTGATGGTTTCAA+GGG 0.587528 7.2:+47148586 MS.gene98324:CDS
TGCGGAACTTAAGATGTTGG+AGG 0.590690 7.2:-47148016 None:intergenic
ATGTTTGCAGTGATCAACTT+CGG 0.596642 7.2:-47147717 None:intergenic
CAATCTTGAAATGTCCGGCA+TGG 0.608926 7.2:+47147422 None:intergenic
ACGAGGTAATGTTACCATGC+CGG 0.615120 7.2:-47147436 None:intergenic
GCTCCATGTTGGTTAGATTG+CGG 0.616847 7.2:-47148034 None:intergenic
GGAAGTTGTGGATAGTTGGG+TGG 0.619960 7.2:+47148253 MS.gene98324:CDS
ACAGGACTTGGAGAATGGAG+AGG 0.667756 7.2:+47148232 MS.gene98324:intron
CAGAGGTCAAAATGAAACAG+AGG 0.670220 7.2:-47148614 None:intergenic
GTTCCGCAATCTAACCAACA+TGG 0.671128 7.2:+47148031 MS.gene98324:CDS
TTGCAAATGAAGAACAACGA+GGG 0.693329 7.2:-47147478 None:intergenic
AAGATGTTGGAGGTAACATG+TGG 0.703188 7.2:-47148006 None:intergenic
CTACAATTGAAAATGCTACG+AGG 0.748964 7.2:-47147453 None:intergenic
GTTGCAAATGAAGAACAACG+AGG 0.797581 7.2:-47147479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATTTGTACATAATA+AGG + chr7.2:47147647-47147666 MS.gene98324:CDS 10.0%
!!! GTTAATTTTCTTTTTAATAA+AGG + chr7.2:47147833-47147852 MS.gene98324:intron 10.0%
!! TATATATCAAATTGGAAAAT+AGG - chr7.2:47148195-47148214 None:intergenic 15.0%
!! AAAAAAATTGAATTGTTGAC+AGG + chr7.2:47148214-47148233 MS.gene98324:intron 20.0%
!! TAAAAAGAAAAGAAAAAGCT+AGG - chr7.2:47148164-47148183 None:intergenic 20.0%
!! TATTTGTACATAATAAGGAA+TGG + chr7.2:47147652-47147671 MS.gene98324:CDS 20.0%
!! TTATTTGATTGATGAAAGTT+AGG + chr7.2:47148503-47148522 MS.gene98324:intron 20.0%
! ATTAGATTCTACATATGCAA+TGG + chr7.2:47148564-47148583 MS.gene98324:intron 25.0%
! CAGAATTGGTAAGAATATTA+TGG + chr7.2:47147811-47147830 MS.gene98324:intron 25.0%
! TAAGAATTTACATGTTGATG+AGG - chr7.2:47148486-47148505 None:intergenic 25.0%
!! AAGCTAGTTTCATCAAAATT+TGG - chr7.2:47148451-47148470 None:intergenic 25.0%
!! TAACTTTTGTAAATCACAAC+AGG + chr7.2:47147983-47148002 MS.gene98324:intron 25.0%
!!! ATGGTAAGATTTTGAAGTTT+AGG - chr7.2:47148122-47148141 None:intergenic 25.0%
ATCCTACCTAGTATCAATAA+GGG - chr7.2:47147943-47147962 None:intergenic 30.0%
CATCAATAAAACCTGATGAA+TGG - chr7.2:47148141-47148160 None:intergenic 30.0%
CTTTAACCCTTATTGATACT+AGG + chr7.2:47147934-47147953 MS.gene98324:intron 30.0%
TCAAAATCTTACCATTCATC+AGG + chr7.2:47148127-47148146 MS.gene98324:CDS 30.0%
! AAATTGGAAAATAGGTGTTG+AGG - chr7.2:47148187-47148206 None:intergenic 30.0%
!!! ATGTTTTGAGTTGTGTTGAA+AGG - chr7.2:47148301-47148320 None:intergenic 30.0%
AACCCTTATTGATACTAGGT+AGG + chr7.2:47147938-47147957 MS.gene98324:intron 35.0%
ATGTTTGCAGTGATCAACTT+CGG - chr7.2:47147720-47147739 None:intergenic 35.0%
ATTGAATTGTTGACAGGACT+TGG + chr7.2:47148220-47148239 MS.gene98324:intron 35.0%
CTACAATTGAAAATGCTACG+AGG - chr7.2:47147456-47147475 None:intergenic 35.0%
CTCAAAAAACTACACTTGTC+TGG + chr7.2:47147549-47147568 MS.gene98324:CDS 35.0%
CTCAAAACATGCTTGCTTAA+AGG + chr7.2:47148311-47148330 MS.gene98324:CDS 35.0%
GATCCTACCTAGTATCAATA+AGG - chr7.2:47147944-47147963 None:intergenic 35.0%
GTAAGATCTGATGGTTTCAA+GGG + chr7.2:47148586-47148605 MS.gene98324:CDS 35.0%
GTGCTTGACATTTGTATCTA+CGG - chr7.2:47148429-47148448 None:intergenic 35.0%
TATATCATCCAGCTTCTATC+TGG + chr7.2:47147594-47147613 MS.gene98324:CDS 35.0%
TATGCAATGGTAAGATCTGA+TGG + chr7.2:47148577-47148596 MS.gene98324:CDS 35.0%
TCGTTGTTCTTCATTTGCAA+CGG + chr7.2:47147481-47147500 MS.gene98324:CDS 35.0%
TCTCACAATGATTACGCTTA+AGG - chr7.2:47148064-47148083 None:intergenic 35.0%
TTGCAAATGAAGAACAACGA+GGG - chr7.2:47147481-47147500 None:intergenic 35.0%
! AGCTTGCAATTCCTCTAAAA+TGG - chr7.2:47147625-47147644 None:intergenic 35.0%
! CTCGTAGCATTTTCAATTGT+AGG + chr7.2:47147454-47147473 MS.gene98324:CDS 35.0%
! GAAACTAGCTTCTTGTACAA+GGG + chr7.2:47148460-47148479 MS.gene98324:intron 35.0%
! TGAAACTAGCTTCTTGTACA+AGG + chr7.2:47148459-47148478 MS.gene98324:intron 35.0%
!! GCTTGCAATTCCTCTAAAAT+GGG - chr7.2:47147624-47147643 None:intergenic 35.0%
!!! AAGTGTAGTTTTTTGAGGAG+AGG - chr7.2:47147546-47147565 None:intergenic 35.0%
!!! CAGACAAGTGTAGTTTTTTG+AGG - chr7.2:47147551-47147570 None:intergenic 35.0%
AAGATGTTGGAGGTAACATG+TGG - chr7.2:47148009-47148028 None:intergenic 40.0%
AATCCACAACCAGTTGAGAA+AGG - chr7.2:47147521-47147540 None:intergenic 40.0%
AGAGGAAGTTGTGGATAGTT+GGG + chr7.2:47148250-47148269 MS.gene98324:CDS 40.0%
AGCGTAATCATTGTGAGAAG+TGG + chr7.2:47148066-47148085 MS.gene98324:CDS 40.0%
AGTGAAAGACCTTTCTCAAC+TGG + chr7.2:47147509-47147528 MS.gene98324:CDS 40.0%
ATCATTGTGAGAAGTGGATC+TGG + chr7.2:47148072-47148091 MS.gene98324:CDS 40.0%
CTTAAGGATAAGCTCCATGT+TGG - chr7.2:47148048-47148067 None:intergenic 40.0%
GACATTTGTATCTACGGAAG+AGG - chr7.2:47148423-47148442 None:intergenic 40.0%
GATTGCGGAACTTAAGATGT+TGG - chr7.2:47148022-47148041 None:intergenic 40.0%
GGTAAGATCTGATGGTTTCA+AGG + chr7.2:47148585-47148604 MS.gene98324:CDS 40.0%
GTTGCAAATGAAGAACAACG+AGG - chr7.2:47147482-47147501 None:intergenic 40.0%
TCACACAGATCATACTCGAA+GGG - chr7.2:47147878-47147897 None:intergenic 40.0%
! ACACTTGTCTGGTGTACTTT+TGG + chr7.2:47147560-47147579 MS.gene98324:CDS 40.0%
! ATCTGGATGTCCCATTTTAG+AGG + chr7.2:47147611-47147630 MS.gene98324:CDS 40.0%
!! AGGCATTCTGGAATATTTGC+TGG - chr7.2:47148281-47148300 None:intergenic 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG - chr7.2:47148293-47148312 None:intergenic 40.0%
ACGAGGTAATGTTACCATGC+CGG - chr7.2:47147439-47147458 None:intergenic 45.0%
AGACCTTTCTCAACTGGTTG+TGG + chr7.2:47147515-47147534 MS.gene98324:CDS 45.0%
ATCTGATGGTTTCAAGGGCA+TGG + chr7.2:47148591-47148610 MS.gene98324:CDS 45.0%
GAGAGGAAGTTGTGGATAGT+TGG + chr7.2:47148249-47148268 MS.gene98324:CDS 45.0%
GTCACACAGATCATACTCGA+AGG - chr7.2:47147879-47147898 None:intergenic 45.0%
GTTCCGCAATCTAACCAACA+TGG + chr7.2:47148031-47148050 MS.gene98324:CDS 45.0%
TATGCTCACTTTGCTCTGCA+GGG + chr7.2:47147767-47147786 MS.gene98324:CDS 45.0%
TCAGCATTTGCGTGCAGAAT+TGG + chr7.2:47147797-47147816 MS.gene98324:CDS 45.0%
TGCGGAACTTAAGATGTTGG+AGG - chr7.2:47148019-47148038 None:intergenic 45.0%
TGTTGACAGGACTTGGAGAA+TGG + chr7.2:47148227-47148246 MS.gene98324:intron 45.0%
TTATGCTCACTTTGCTCTGC+AGG + chr7.2:47147766-47147785 MS.gene98324:CDS 45.0%
! GCTCCATGTTGGTTAGATTG+CGG - chr7.2:47148037-47148056 None:intergenic 45.0%
!!! AATTTTTTTATATATCAAAT+TGG - chr7.2:47148203-47148222 None:intergenic 5.0%
ACAGGACTTGGAGAATGGAG+AGG + chr7.2:47148232-47148251 MS.gene98324:intron 50.0%
GGAAGTTGTGGATAGTTGGG+TGG + chr7.2:47148253-47148272 MS.gene98324:CDS 50.0%
GGAGAATGGAGAGGAAGTTG+TGG + chr7.2:47148241-47148260 MS.gene98324:CDS 50.0%
TGGGACATCCAGATAGAAGC+TGG - chr7.2:47147605-47147624 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 47147432 47148630 47147432 ID=MS.gene98324
chr7.2 mRNA 47147432 47148630 47147432 ID=MS.gene98324.t1;Parent=MS.gene98324
chr7.2 exon 47147432 47147818 47147432 ID=MS.gene98324.t1.exon1;Parent=MS.gene98324.t1
chr7.2 CDS 47147432 47147818 47147432 ID=cds.MS.gene98324.t1;Parent=MS.gene98324.t1
chr7.2 exon 47148005 47148148 47148005 ID=MS.gene98324.t1.exon2;Parent=MS.gene98324.t1
chr7.2 CDS 47148005 47148148 47148005 ID=cds.MS.gene98324.t1;Parent=MS.gene98324.t1
chr7.2 exon 47148236 47148350 47148236 ID=MS.gene98324.t1.exon3;Parent=MS.gene98324.t1
chr7.2 CDS 47148236 47148350 47148236 ID=cds.MS.gene98324.t1;Parent=MS.gene98324.t1
chr7.2 exon 47148569 47148630 47148569 ID=MS.gene98324.t1.exon4;Parent=MS.gene98324.t1
chr7.2 CDS 47148569 47148630 47148569 ID=cds.MS.gene98324.t1;Parent=MS.gene98324.t1
Gene Sequence

>MS.gene98324

ATGTCCGGCATGGTAACATTACCTCGTAGCATTTTCAATTGTAGGACCCTCGTTGTTCTTCATTTGCAACGGATTACAGTGAAAGACCTTTCTCAACTGGTTGTGGATTTTCCTCTCCTCAAAAAACTACACTTGTCTGGTGTACTTTTGGAACGTGCTGAATATATCATCCAGCTTCTATCTGGATGTCCCATTTTAGAGGAATTGCAAGCTGAATATTTATTTGTACATAATAAGGAATGGCTTGTTTCAATGAATTTTATACGAGAAAAGCTTCGAAGCTTACCGAAGTTGATCACTGCAAACATTACTAAATCGACTCATTCTTTGACGTTTATGCTCACTTTGCTCTGCAGGGCAGAGTCTCAGCATTTGCGTGCAGAATTGGTAAGAATATTATGGTTAATTTTCTTTTTAATAAAGGTTGTTAATTATAGTTTTTGCCCTTCGAGTATGATCTGTGTGACGAATCTGTGTTACGAATTTGAGTTATGATCTTGCACTTTAACCCTTATTGATACTAGGTAGGATCTAGTTTTCGAGCGTATTTCTAACTTTTGTAAATCACAACAGGCCACATGTTACCTCCAACATCTTAAGTTCCGCAATCTAACCAACATGGAGCTTATCCTTAAGCGTAATCATTGTGAGAAGTGGATCTGGTTGCTAGAAGTGCTGAAACGTTGTCCTAAACTTCAAAATCTTACCATTCATCAGGTTTTATTGATGCCTAGCTTTTTCTTTTCTTTTTACCTCAACACCTATTTTCCAATTTGATATATAAAAAAATTGAATTGTTGACAGGACTTGGAGAATGGAGAGGAAGTTGTGGATAGTTGGGTGGATCCAGCAAATATTCCAGAATGCCTTTCAACACAACTCAAAACATGCTTGCTTAAAGGCTATAAATGCACAGAATGTGAGCTTCAATTTGCAAAATATATTATGCATAATTCAAAAGTACTGAACACAATTTCAATCAAGAGTGCCTCTTCCGTAGATACAAATGTCAAGCACCAAATTTTGATGAAACTAGCTTCTTGTACAAGGGCCTCATCAACATGTAAATTCTTATTTGATTGATGAAAGTTAGGTCATAGTTTACAATAGCTCTTACATGTCTACTTCTTATATTAGATTCTACATATGCAATGGTAAGATCTGATGGTTTCAAGGGCATGGCCTCTGTTTCATTTTGA
Protein sequence

>MS.gene98324.t1

MSGMVTLPRSIFNCRTLVVLHLQRITVKDLSQLVVDFPLLKKLHLSGVLLERAEYIIQLLSGCPILEELQAEYLFVHNKEWLVSMNFIREKLRSLPKLITANITKSTHSLTFMLTLLCRAESQHLRAELATCYLQHLKFRNLTNMELILKRNHCEKWIWLLEVLKRCPKLQNLTIHQDLENGEEVVDSWVDPANIPECLSTQLKTCLLKGYKCTEYSTYAMVRSDGFKGMASVSF