AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050239

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050239.t1 MTR_7g056433 57.082 233 87 7 2 226 82 309 2.60e-70 221
MS.gene050239.t1 MTR_7g115270 45.082 244 112 9 2 226 82 322 2.05e-49 167
MS.gene050239.t1 MTR_5g013500 44.351 239 100 7 2 226 65 284 6.62e-48 162
MS.gene050239.t1 MTR_1g041245 41.991 231 119 9 2 225 81 303 5.73e-39 139
MS.gene050239.t1 MTR_7g098510 39.149 235 122 8 2 226 88 311 7.68e-37 134
MS.gene050239.t1 MTR_7g056420 43.498 223 85 10 2 214 79 270 8.96e-36 134
MS.gene050239.t1 MTR_7g056430 43.498 223 85 10 2 214 79 270 9.48e-36 134
MS.gene050239.t1 MTR_7g098570 38.009 221 122 7 2 215 90 302 1.55e-35 132
MS.gene050239.t1 MTR_7g032380 37.553 237 105 8 1 226 73 277 4.30e-35 128
MS.gene050239.t1 MTR_7g056447 52.083 144 55 4 2 144 79 209 2.50e-32 119
MS.gene050239.t1 MTR_7g034120 41.441 222 114 9 2 214 8 222 1.12e-31 118
MS.gene050239.t1 MTR_3g036250 38.559 236 114 11 2 226 75 290 1.58e-31 119
MS.gene050239.t1 MTR_7g032370 38.942 208 104 9 21 222 78 268 3.41e-31 118
MS.gene050239.t1 MTR_7g098480 37.443 219 124 7 2 215 88 298 3.19e-29 114
MS.gene050239.t1 MTR_7g034115 37.054 224 131 7 3 222 82 299 3.71e-28 110
MS.gene050239.t1 MTR_7g033915 37.445 227 106 9 2 219 81 280 1.58e-27 108
MS.gene050239.t1 MTR_3g040700 36.937 222 110 10 3 214 114 315 2.27e-27 108
MS.gene050239.t1 MTR_5g008950 33.040 227 120 8 7 222 80 285 4.06e-27 107
MS.gene050239.t1 MTR_7g033990 39.648 227 119 10 2 219 81 298 2.27e-26 106
MS.gene050239.t1 MTR_7g056417 43.791 153 72 4 50 190 5 155 3.01e-25 97.8
MS.gene050239.t1 MTR_7g088260 35.780 218 132 5 2 216 161 373 4.09e-25 103
MS.gene050239.t1 MTR_3g023630 34.404 218 133 6 4 219 81 290 3.03e-24 99.8
MS.gene050239.t1 MTR_3g082890 34.286 245 122 10 2 218 164 397 3.30e-24 100
MS.gene050239.t1 MTR_5g007410 34.978 223 126 7 4 214 102 317 8.56e-24 99.4
MS.gene050239.t1 MTR_3g082890 35.124 242 116 11 2 214 84 313 4.30e-23 97.4
MS.gene050239.t1 MTR_0009s0080 36.161 224 118 9 24 236 115 324 7.07e-23 96.7
MS.gene050239.t1 MTR_0492s0020 34.211 228 125 8 2 219 156 368 7.64e-23 96.7
MS.gene050239.t1 MTR_0543s0010 34.211 228 125 8 2 219 156 368 1.20e-22 95.9
MS.gene050239.t1 MTR_6g045333 36.245 229 132 7 4 222 139 363 2.71e-22 95.1
MS.gene050239.t1 MTR_7g007080 33.755 237 127 8 10 232 84 304 1.40e-21 92.4
MS.gene050239.t1 MTR_6g022500 35.321 218 124 7 3 212 176 384 1.51e-21 93.2
MS.gene050239.t1 MTR_1g053025 33.654 208 110 9 25 215 104 300 1.73e-21 92.4
MS.gene050239.t1 MTR_5g073420 30.973 226 141 6 4 228 88 299 4.86e-21 90.9
MS.gene050239.t1 MTR_3g107100 33.838 198 120 5 23 214 103 295 1.22e-20 90.1
MS.gene050239.t1 MTR_2g007450 31.579 247 125 8 4 215 93 330 4.07e-20 88.6
MS.gene050239.t1 MTR_3g108560 35.371 229 124 9 3 219 91 307 8.37e-20 87.4
MS.gene050239.t1 MTR_3g108560 35.586 222 124 8 3 217 91 300 8.37e-20 86.7
MS.gene050239.t1 MTR_5g008920 31.944 216 134 7 11 222 92 298 2.77e-19 86.3
MS.gene050239.t1 MTR_3g071850 34.862 218 128 7 4 212 102 314 3.69e-19 86.7
MS.gene050239.t1 MTR_3g108150 34.529 223 125 7 2 214 83 294 3.86e-19 85.5
MS.gene050239.t1 MTR_3g087260 36.649 191 103 7 33 215 184 364 4.59e-19 85.9
MS.gene050239.t1 MTR_3g087260 28.767 219 122 9 19 229 82 274 3.76e-13 68.6
MS.gene050239.t1 MTR_5g012840 32.877 219 93 9 2 214 59 229 6.66e-19 84.3
MS.gene050239.t1 MTR_5g058000 35.780 218 119 10 3 214 83 285 1.43e-18 84.0
MS.gene050239.t1 MTR_1089s0010 31.651 218 128 7 4 214 84 287 3.30e-18 83.2
MS.gene050239.t1 MTR_6g011460 33.028 218 130 6 3 214 121 328 7.41e-18 82.4
MS.gene050239.t1 MTR_4g134150 38.356 146 80 4 2 146 80 216 7.69e-18 80.1
MS.gene050239.t1 MTR_6g040270 31.132 212 139 3 4 214 84 289 8.36e-18 82.0
MS.gene050239.t1 MTR_3g105060 31.481 216 122 8 10 213 87 288 1.74e-17 80.9
MS.gene050239.t1 MTR_5g083890 34.021 194 101 7 51 233 141 318 2.84e-17 80.9
MS.gene050239.t1 MTR_5g045170 33.333 225 139 8 2 218 83 304 7.65e-17 79.3
MS.gene050239.t1 MTR_2g008320 33.333 195 106 8 45 226 166 349 9.44e-17 79.3
MS.gene050239.t1 MTR_2g007400 30.918 207 128 6 22 219 110 310 1.02e-16 79.0
MS.gene050239.t1 MTR_2g007500 30.837 227 126 7 22 226 91 308 1.10e-16 78.2
MS.gene050239.t1 MTR_8g085430 49.000 100 46 4 21 118 107 203 1.22e-16 78.2
MS.gene050239.t1 MTR_3g026920 34.783 184 80 7 47 213 159 319 1.34e-16 78.6
MS.gene050239.t1 MTR_5g061680 30.189 212 120 4 3 214 87 270 2.73e-16 77.0
MS.gene050239.t1 MTR_1g107385 37.356 174 89 6 51 214 165 328 1.38e-15 75.9
MS.gene050239.t1 MTR_7g056020 34.848 198 115 5 24 214 92 282 1.72e-15 75.9
MS.gene050239.t1 MTR_5g058100 32.110 218 135 6 3 214 84 294 2.05e-15 75.1
MS.gene050239.t1 MTR_7g026500 31.441 229 128 10 3 214 89 305 2.25e-15 75.1
MS.gene050239.t1 MTR_3g107120 32.127 221 130 8 4 214 93 303 2.56e-15 74.7
MS.gene050239.t1 MTR_3g467400 42.953 149 65 8 12 144 88 232 3.04e-15 74.3
MS.gene050239.t1 MTR_3g099830 32.161 199 122 6 20 214 86 275 4.05e-15 73.9
MS.gene050239.t1 MTR_2g036470 32.843 204 116 6 22 214 110 303 4.64e-15 73.9
MS.gene050239.t1 MTR_7g056287 33.505 194 115 7 22 213 99 280 1.14e-14 72.8
MS.gene050239.t1 MTR_1g108820 31.304 230 115 8 22 229 96 304 2.16e-14 72.0
MS.gene050239.t1 MTR_3g107160 29.756 205 129 8 25 223 107 302 4.07e-14 71.2
MS.gene050239.t1 MTR_7g056277 34.921 189 109 7 22 208 355 531 5.05e-14 71.2
MS.gene050239.t1 MTR_2g007360 32.240 183 108 5 51 225 107 281 5.32e-14 70.9
MS.gene050239.t1 MTR_7g075820 29.858 211 120 7 23 214 103 304 6.65e-14 70.9
MS.gene050239.t1 MTR_2g005990 30.986 213 124 6 20 220 102 303 9.04e-14 70.5
MS.gene050239.t1 MTR_1g108820 31.163 215 114 7 22 214 96 298 9.22e-14 70.1
MS.gene050239.t1 MTR_1g108800 33.505 194 103 7 24 205 67 246 9.94e-14 70.1
MS.gene050239.t1 MTR_2g008310 33.333 189 104 8 42 218 109 287 1.03e-13 70.1
MS.gene050239.t1 MTR_7g060470 28.837 215 119 6 29 219 107 311 1.49e-13 69.7
MS.gene050239.t1 MTR_5g061410 31.818 198 122 6 23 214 77 267 1.55e-13 68.6
MS.gene050239.t1 MTR_7g007370 30.108 186 112 6 51 227 93 269 2.78e-13 68.6
MS.gene050239.t1 MTR_1g085120 28.889 225 137 5 3 214 254 468 9.25e-13 67.4
MS.gene050239.t1 MTR_7g055943 27.778 234 150 6 3 228 115 337 9.46e-13 67.4
MS.gene050239.t1 MTR_1g085120 28.889 225 137 5 3 214 242 456 1.12e-12 67.4
MS.gene050239.t1 MTR_1g085120 28.889 225 137 5 3 214 167 381 1.17e-12 67.4
MS.gene050239.t1 MTR_7g075800 26.147 218 119 7 31 214 109 318 1.58e-12 67.0
MS.gene050239.t1 MTR_5g073370 32.456 228 122 10 8 226 97 301 1.95e-12 66.2
MS.gene050239.t1 MTR_5g073340 32.143 224 117 11 7 214 66 270 5.90e-12 64.7
MS.gene050239.t1 MTR_4g039440 29.524 210 122 6 20 214 121 319 6.38e-12 65.1
MS.gene050239.t1 MTR_1g066830 33.005 203 115 8 24 214 104 297 7.03e-12 64.7
MS.gene050239.t1 MTR_8g016130 44.954 109 51 3 30 136 61 162 7.15e-12 62.4
MS.gene050239.t1 MTR_3g109982 40.870 115 59 4 2 114 83 190 8.61e-12 64.7
MS.gene050239.t1 MTR_3g109982 34.973 183 104 7 52 226 220 395 2.29e-11 63.5
MS.gene050239.t1 MTR_3g110010 40.870 115 59 4 2 114 83 190 1.37e-11 64.3
MS.gene050239.t1 MTR_3g110010 36.257 171 94 7 52 214 220 383 4.81e-11 62.8
MS.gene050239.t1 MTR_6g044560 30.000 210 118 7 21 228 299 481 1.94e-11 63.5
MS.gene050239.t1 MTR_6g044572 30.000 210 118 7 21 228 123 305 2.14e-11 63.2
MS.gene050239.t1 MTR_5g065100 39.167 120 64 5 23 139 100 213 2.46e-11 63.2
MS.gene050239.t1 MTR_6g022360 33.929 168 97 5 56 214 154 316 3.83e-11 62.8
MS.gene050239.t1 MTR_4g098590 30.516 213 118 9 22 217 95 294 9.91e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050239.t1 AT5G56420 23.554 242 132 6 21 214 94 330 5.59e-11 62.4
MS.gene050239.t1 AT5G56420 23.554 242 132 6 21 214 94 330 5.59e-11 62.4
MS.gene050239.t1 AT5G56420 23.554 242 132 6 21 214 94 330 5.59e-11 62.4

Find 54 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTAGTTTGCTTTGT+GGG 0.254925 7.1:+53162993 MS.gene050239:CDS
ACCCCGGGCGACTCTTGTTT+TGG 0.292623 7.1:+53162898 MS.gene050239:CDS
CTTGTTGTTCTTCATTTGCA+TGG 0.335604 7.1:+53162728 MS.gene050239:CDS
TATAAGCTTCTGAAGAAATA+AGG 0.344001 7.1:-53162568 None:intergenic
TATAAATCGCAGTGGTTCAT+AGG 0.347125 7.1:+53163110 MS.gene050239:intron
TCAATTTGAAAATATGCAAC+AGG 0.350796 7.1:+53162657 MS.gene050239:CDS
TGAATTGTTGACAGGACTTC+GGG 0.350880 7.1:+53163344 MS.gene050239:intron
GGCCATCCTGATAAAAGCTT+TGG 0.370177 7.1:-53162845 None:intergenic
ATGTTTGCTCTGATCAAATT+CGG 0.394664 7.1:-53162941 None:intergenic
GTTCTCTTTAGTTTGCTTTG+TGG 0.407240 7.1:+53162992 MS.gene050239:CDS
TGGCAGTCTCGTGGACTTGT+GGG 0.413288 7.1:+53163794 MS.gene050239:intron
AGCATAAACACTGTGAGAAC+TGG 0.415364 7.1:+53163186 MS.gene050239:CDS
CTGGCAGTCTCGTGGACTTG+TGG 0.422098 7.1:+53163793 MS.gene050239:intron
ATCTGCAATTCCTCGAGAAT+GGG 0.424766 7.1:-53162866 None:intergenic
ATATGCAACAGGGTTAGCTT+TGG 0.426166 7.1:+53162668 MS.gene050239:CDS
TATCTGCAATTCCTCGAGAA+TGG 0.429704 7.1:-53162867 None:intergenic
TTGTTGTTCTTCATTTGCAT+GGG 0.466155 7.1:+53162729 MS.gene050239:CDS
GCCATCCTGATAAAAGCTTT+GGG 0.470482 7.1:-53162844 None:intergenic
TTGAATTGTTGACAGGACTT+CGG 0.491152 7.1:+53163343 MS.gene050239:intron
TGTTGACAGGACTTCGGGAA+TGG 0.496348 7.1:+53163349 MS.gene050239:intron
TGACATCGTGCGAGTGGTGG+AGG 0.501119 7.1:-53162592 None:intergenic
CCTCCAAAACAAGAGTCGCC+CGG 0.501790 7.1:-53162901 None:intergenic
GGGAATGGAAATGAAGTTGT+CGG 0.519513 7.1:+53163364 MS.gene050239:CDS
CTCCAAAACAAGAGTCGCCC+GGG 0.527600 7.1:-53162900 None:intergenic
AAGAAATAAGGTGGAAGGAT+CGG 0.530267 7.1:-53162556 None:intergenic
AAATAAGGTGGAAGGATCGG+AGG 0.530454 7.1:-53162553 None:intergenic
TTTACGCCGCTGTGCAAAGA+GGG 0.538004 7.1:+53162624 MS.gene050239:CDS
AATAAGGTGGAAGGATCGGA+GGG 0.544415 7.1:-53162552 None:intergenic
TGGACTTGTGGGAATGAGAA+TGG 0.544504 7.1:+53163805 MS.gene050239:CDS
CAAGAACAAAACCTCGTGAA+TGG 0.551873 7.1:-53163258 None:intergenic
GAATCTTTCTCGTGTCGTTG+TGG 0.553434 7.1:+53162760 MS.gene050239:CDS
TGCAGATAAAATACTTACCC+CGG 0.556174 7.1:+53162882 MS.gene050239:CDS
TCTCTTTAGTTTGCTTTGTG+GGG 0.558013 7.1:+53162994 MS.gene050239:CDS
TTCTGAAGAAATAAGGTGGA+AGG 0.566341 7.1:-53162561 None:intergenic
TATTGACATCGTGCGAGTGG+TGG 0.575155 7.1:-53162595 None:intergenic
ATCAGGATGGCCCATTCTCG+AGG 0.581733 7.1:+53162856 MS.gene050239:CDS
ATCTATTGACATCGTGCGAG+TGG 0.587723 7.1:-53162598 None:intergenic
CTGCAACTGAAAATGCTCAA+AGG 0.614497 7.1:-53162701 None:intergenic
TTCAGACATGTATTCTAGTG+CGG 0.619546 7.1:+53162964 MS.gene050239:CDS
TCAAAATCTTGCCATTCACG+AGG 0.621244 7.1:+53163247 MS.gene050239:CDS
AACACTGTGAGAACTGGAAG+TGG 0.625079 7.1:+53163192 MS.gene050239:CDS
CAATTTGAAAATATGCAACA+GGG 0.626273 7.1:+53162658 MS.gene050239:CDS
AAGCTTCTGAAGAAATAAGG+TGG 0.629789 7.1:-53162565 None:intergenic
GCAGATAAAATACTTACCCC+GGG 0.631670 7.1:+53162883 MS.gene050239:CDS
AACTACATAGACTAGAGTAG+TGG 0.645491 7.1:+53163842 MS.gene050239:CDS
GTTTACGCCGCTGTGCAAAG+AGG 0.652228 7.1:+53162623 MS.gene050239:CDS
GTTTCAAAATCTAATCCACA+TGG 0.661457 7.1:+53163151 MS.gene050239:CDS
CATGCAAATGAAGAACAACA+AGG 0.662478 7.1:-53162727 None:intergenic
TTCGATCCCTCTTTGCACAG+CGG 0.666997 7.1:-53162630 None:intergenic
ATAAGGTGGAAGGATCGGAG+GGG 0.669279 7.1:-53162551 None:intergenic
GCTCAAGAGTAAGTTCCATG+TGG 0.684992 7.1:-53163166 None:intergenic
ATGCAAATGAAGAACAACAA+GGG 0.703510 7.1:-53162726 None:intergenic
TCCAAAACAAGAGTCGCCCG+GGG 0.709125 7.1:-53162899 None:intergenic
ACACTGTGAGAACTGGAAGT+GGG 0.733642 7.1:+53163193 MS.gene050239:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTTAAACATTTAT+TGG - chr7.1:53163066-53163085 None:intergenic 10.0%
!! ATAAATGTTTAAATGAAATT+AGG + chr7.1:53163066-53163085 MS.gene050239:intron 10.0%
!! AAAATATTTGAATTGTTGAC+AGG + chr7.1:53163336-53163355 MS.gene050239:intron 20.0%
! AAACTAACTTCGATATCATT+TGG - chr7.1:53163573-53163592 None:intergenic 25.0%
! ATGAATATGTTGAAAGAATC+TGG - chr7.1:53163706-53163725 None:intergenic 25.0%
! CAATTTGAAAATATGCAACA+GGG + chr7.1:53162658-53162677 MS.gene050239:CDS 25.0%
! TCAATTTGAAAATATGCAAC+AGG + chr7.1:53162657-53162676 MS.gene050239:CDS 25.0%
! TTATTTGATTGTTGTCAGTT+AGG + chr7.1:53163625-53163644 MS.gene050239:intron 25.0%
!! GATTGATGAATGTAATTTTC+TGG + chr7.1:53163774-53163793 MS.gene050239:intron 25.0%
!! GTCTGTTTTCATGTATTAAA+GGG + chr7.1:53163677-53163696 MS.gene050239:intron 25.0%
!! TATAAGCTTCTGAAGAAATA+AGG - chr7.1:53162571-53162590 None:intergenic 25.0%
!! TGTCTGTTTTCATGTATTAA+AGG + chr7.1:53163676-53163695 MS.gene050239:intron 25.0%
!! TGTTGCATATTTTCAAATTG+AGG - chr7.1:53162658-53162677 None:intergenic 25.0%
ATGCAAATGAAGAACAACAA+GGG - chr7.1:53162729-53162748 None:intergenic 30.0%
ATGTTTGCTCTGATCAAATT+CGG - chr7.1:53162944-53162963 None:intergenic 30.0%
GTACTTGGCATTTATATCTA+TGG - chr7.1:53163551-53163570 None:intergenic 30.0%
GTTTCAAAATCTAATCCACA+TGG + chr7.1:53163151-53163170 MS.gene050239:CDS 30.0%
! CTATCTTTTATAAATCGCAG+TGG + chr7.1:53163102-53163121 MS.gene050239:intron 30.0%
! GATATCGAAGTTAGTTTCAT+CGG + chr7.1:53163576-53163595 MS.gene050239:intron 30.0%
! TTGTTGTTCTTCATTTGCAT+GGG + chr7.1:53162729-53162748 MS.gene050239:CDS 30.0%
!! TACACAAATGAAGTGTTTTG+AGG - chr7.1:53162796-53162815 None:intergenic 30.0%
!! TTCTCTTTAGTTTGCTTTGT+GGG + chr7.1:53162993-53163012 MS.gene050239:CDS 30.0%
!!! AATGGCAAGATTTTGAAGTT+TGG - chr7.1:53163243-53163262 None:intergenic 30.0%
!!! ATGGCAAGATTTTGAAGTTT+GGG - chr7.1:53163242-53163261 None:intergenic 30.0%
!!! TGGATTAGATTTTGAAACGT+GGG - chr7.1:53163149-53163168 None:intergenic 30.0%
AAAAATTCTGTGTGTAGACC+TGG + chr7.1:53163018-53163037 MS.gene050239:CDS 35.0%
AAAATGGTGAAAAACTGTCG+AGG - chr7.1:53163304-53163323 None:intergenic 35.0%
AAGAAATAAGGTGGAAGGAT+CGG - chr7.1:53162559-53162578 None:intergenic 35.0%
CATGCAAATGAAGAACAACA+AGG - chr7.1:53162730-53162749 None:intergenic 35.0%
CTTCGATATCATTTGGTACT+TGG - chr7.1:53163566-53163585 None:intergenic 35.0%
GAAATGAAGTTGTCGGTAAT+TGG + chr7.1:53163371-53163390 MS.gene050239:intron 35.0%
GGCATTTATATCTATGGAAG+AGG - chr7.1:53163545-53163564 None:intergenic 35.0%
TATAAATCGCAGTGGTTCAT+AGG + chr7.1:53163110-53163129 MS.gene050239:intron 35.0%
TGCAGATAAAATACTTACCC+CGG + chr7.1:53162882-53162901 MS.gene050239:CDS 35.0%
TGTTGTCAGTTAGGAACTTA+GGG + chr7.1:53163634-53163653 MS.gene050239:intron 35.0%
TTCAGACATGTATTCTAGTG+CGG + chr7.1:53162964-53162983 MS.gene050239:CDS 35.0%
TTGAATTGTTGACAGGACTT+CGG + chr7.1:53163343-53163362 MS.gene050239:intron 35.0%
TTGTTGTCAGTTAGGAACTT+AGG + chr7.1:53163633-53163652 MS.gene050239:intron 35.0%
! AAGCTTCTGAAGAAATAAGG+TGG - chr7.1:53162568-53162587 None:intergenic 35.0%
! CTTTAAAAACATGGAATGCG+AGG + chr7.1:53163456-53163475 MS.gene050239:intron 35.0%
! TTCTGAAGAAATAAGGTGGA+AGG - chr7.1:53162564-53162583 None:intergenic 35.0%
!! AGAGGCACTCTTAATTGAAA+TGG - chr7.1:53163527-53163546 None:intergenic 35.0%
!! ATGTTCTGAGATGTGTTGAA+AGG - chr7.1:53163423-53163442 None:intergenic 35.0%
!! CTTGTTGTTCTTCATTTGCA+TGG + chr7.1:53162728-53162747 MS.gene050239:CDS 35.0%
!! GCTTGAAGGCTTTAAAAACA+TGG + chr7.1:53163447-53163466 MS.gene050239:intron 35.0%
!! GTTCTCTTTAGTTTGCTTTG+TGG + chr7.1:53162992-53163011 MS.gene050239:CDS 35.0%
!! TCTCTTTAGTTTGCTTTGTG+GGG + chr7.1:53162994-53163013 MS.gene050239:CDS 35.0%
!!! AAATGAAGTGTTTTGAGGAG+AGG - chr7.1:53162791-53162810 None:intergenic 35.0%
!!! GGATTAGATTTTGAAACGTG+GGG - chr7.1:53163148-53163167 None:intergenic 35.0%
!!! GTGGATTAGATTTTGAAACG+TGG - chr7.1:53163150-53163169 None:intergenic 35.0%
AGCATAAACACTGTGAGAAC+TGG + chr7.1:53163186-53163205 MS.gene050239:CDS 40.0%
AGGCATTCAGGAACAATTGT+TGG - chr7.1:53163403-53163422 None:intergenic 40.0%
AGTCGTGTAATACTCTTACC+AGG - chr7.1:53163039-53163058 None:intergenic 40.0%
ATCTGCAATTCCTCGAGAAT+GGG - chr7.1:53162869-53162888 None:intergenic 40.0%
CAAGAACAAAACCTCGTGAA+TGG - chr7.1:53163261-53163280 None:intergenic 40.0%
CTGCAACTGAAAATGCTCAA+AGG - chr7.1:53162704-53162723 None:intergenic 40.0%
GCAGATAAAATACTTACCCC+GGG + chr7.1:53162883-53162902 MS.gene050239:CDS 40.0%
GCCATCCTGATAAAAGCTTT+GGG - chr7.1:53162847-53162866 None:intergenic 40.0%
GGGAATGGAAATGAAGTTGT+CGG + chr7.1:53163364-53163383 MS.gene050239:CDS 40.0%
TATCTGCAATTCCTCGAGAA+TGG - chr7.1:53162870-53162889 None:intergenic 40.0%
TCAAAATCTTGCCATTCACG+AGG + chr7.1:53163247-53163266 MS.gene050239:CDS 40.0%
TGAAGTTGTCGGTAATTGGA+TGG + chr7.1:53163375-53163394 MS.gene050239:intron 40.0%
TGAATTGTTGACAGGACTTC+GGG + chr7.1:53163344-53163363 MS.gene050239:intron 40.0%
! CTTTGAGCATTTTCAGTTGC+AGG + chr7.1:53162702-53162721 MS.gene050239:CDS 40.0%
! GAAGTTAGTTTCATCGGCAA+GGG + chr7.1:53163582-53163601 MS.gene050239:intron 40.0%
! TCCCAAAGCTTTTATCAGGA+TGG + chr7.1:53162843-53162862 MS.gene050239:CDS 40.0%
! TGTCTCCCAAAGCTTTTATC+AGG + chr7.1:53162839-53162858 MS.gene050239:CDS 40.0%
!! AGATGTGTTGAAAGGCATTC+AGG - chr7.1:53163415-53163434 None:intergenic 40.0%
!! ATATGCAACAGGGTTAGCTT+TGG + chr7.1:53162668-53162687 MS.gene050239:CDS 40.0%
AAATAAGGTGGAAGGATCGG+AGG - chr7.1:53162556-53162575 None:intergenic 45.0%
AACACTGTGAGAACTGGAAG+TGG + chr7.1:53163192-53163211 MS.gene050239:CDS 45.0%
AATAAGGTGGAAGGATCGGA+GGG - chr7.1:53162555-53162574 None:intergenic 45.0%
ACACTGTGAGAACTGGAAGT+GGG + chr7.1:53163193-53163212 MS.gene050239:CDS 45.0%
ATCTATTGACATCGTGCGAG+TGG - chr7.1:53162601-53162620 None:intergenic 45.0%
CTCAGAACATGCTTGCTTGA+AGG + chr7.1:53163433-53163452 MS.gene050239:intron 45.0%
GCTCAAGAGTAAGTTCCATG+TGG - chr7.1:53163169-53163188 None:intergenic 45.0%
GGCCATCCTGATAAAAGCTT+TGG - chr7.1:53162848-53162867 None:intergenic 45.0%
TGGACTTGTGGGAATGAGAA+TGG + chr7.1:53163805-53163824 MS.gene050239:CDS 45.0%
! CGAAGTTAGTTTCATCGGCA+AGG + chr7.1:53163581-53163600 MS.gene050239:intron 45.0%
! GAATCTTTCTCGTGTCGTTG+TGG + chr7.1:53162760-53162779 MS.gene050239:CDS 45.0%
!! GTAATTTTCTGGCAGTCTCG+TGG + chr7.1:53163785-53163804 MS.gene050239:intron 45.0%
!!! TTTTGTAAATAAAATAAAAA+TGG - chr7.1:53163320-53163339 None:intergenic 5.0%
ATAAGGTGGAAGGATCGGAG+GGG - chr7.1:53162554-53162573 None:intergenic 50.0%
TATTGACATCGTGCGAGTGG+TGG - chr7.1:53162598-53162617 None:intergenic 50.0%
TGTTGACAGGACTTCGGGAA+TGG + chr7.1:53163349-53163368 MS.gene050239:intron 50.0%
TTCGATCCCTCTTTGCACAG+CGG - chr7.1:53162633-53162652 None:intergenic 50.0%
TTTACGCCGCTGTGCAAAGA+GGG + chr7.1:53162624-53162643 MS.gene050239:CDS 50.0%
ATCAGGATGGCCCATTCTCG+AGG + chr7.1:53162856-53162875 MS.gene050239:CDS 55.0%
CCTCCAAAACAAGAGTCGCC+CGG - chr7.1:53162904-53162923 None:intergenic 55.0%
CTCCAAAACAAGAGTCGCCC+GGG - chr7.1:53162903-53162922 None:intergenic 55.0%
GTTTACGCCGCTGTGCAAAG+AGG + chr7.1:53162623-53162642 MS.gene050239:CDS 55.0%
TCCAAAACAAGAGTCGCCCG+GGG - chr7.1:53162902-53162921 None:intergenic 55.0%
TGGCAGTCTCGTGGACTTGT+GGG + chr7.1:53163794-53163813 MS.gene050239:intron 55.0%
CTGGCAGTCTCGTGGACTTG+TGG + chr7.1:53163793-53163812 MS.gene050239:intron 60.0%
TGACATCGTGCGAGTGGTGG+AGG - chr7.1:53162595-53162614 None:intergenic 60.0%
!! ACCCCGGGCGACTCTTGTTT+TGG + chr7.1:53162898-53162917 MS.gene050239:CDS 60.0%
!!! CCGGGCGACTCTTGTTTTGG+AGG + chr7.1:53162901-53162920 MS.gene050239:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 53162545 53163861 53162545 ID=MS.gene050239
chr7.1 mRNA 53162545 53163861 53162545 ID=MS.gene050239.t1;Parent=MS.gene050239
chr7.1 exon 53162545 53163039 53162545 ID=MS.gene050239.t1.exon1;Parent=MS.gene050239.t1
chr7.1 CDS 53162545 53163039 53162545 ID=cds.MS.gene050239.t1;Parent=MS.gene050239.t1
chr7.1 exon 53163122 53163268 53163122 ID=MS.gene050239.t1.exon2;Parent=MS.gene050239.t1
chr7.1 CDS 53163122 53163268 53163122 ID=cds.MS.gene050239.t1;Parent=MS.gene050239.t1
chr7.1 exon 53163358 53163385 53163358 ID=MS.gene050239.t1.exon3;Parent=MS.gene050239.t1
chr7.1 CDS 53163358 53163385 53163358 ID=cds.MS.gene050239.t1;Parent=MS.gene050239.t1
chr7.1 exon 53163800 53163861 53163800 ID=MS.gene050239.t1.exon4;Parent=MS.gene050239.t1
chr7.1 CDS 53163800 53163861 53163800 ID=cds.MS.gene050239.t1;Parent=MS.gene050239.t1
Gene Sequence

>MS.gene050239

ATGTTACCCCTCCGATCCTTCCACCTTATTTCTTCAGAAGCTTATAACCTCCACCACTCGCACGATGTCAATAGATTTGTTTACGCCGCTGTGCAAAGAGGGATCGAAAACCTCAATTTGAAAATATGCAACAGGGTTAGCTTTGGACTCAAGTTACCTTTGAGCATTTTCAGTTGCAGGACCCTTGTTGTTCTTCATTTGCATGGGCTAACAGCGAATCTTTCTCGTGTCGTTGTGGATTTTCCTCTCCTCAAAACACTTCATTTGTGTAACGTACATTTTGCACGTGATCAATGTCTCCCAAAGCTTTTATCAGGATGGCCCATTCTCGAGGAATTGCAGATAAAATACTTACCCCGGGCGACTCTTGTTTTGGAGGAAAATTTTGAATGCTTGCCGAATTTGATCAGAGCAAACATTTCAGACATGTATTCTAGTGCGGCAAGTGTTCTCTTTAGTTTGCTTTGTGGGGCAAAAATTCTGTGTGTAGACCTGGTAAGAGTATTACACGACTCTCTCCAATAAATGTTTAAATGAAATTAGGCTTTATTTGATTTCTATCTTTTATAAATCGCAGTGGTTCATAGGTTATATCAATTTCCCCACGTTTCAAAATCTAATCCACATGGAACTTACTCTTGAGCATAAACACTGTGAGAACTGGAAGTGGGTGATACAAGTGCTGAAACATTGTCCCAAACTTCAAAATCTTGCCATTCACGAGGTTTTGTTCTTGTCTAAGATTTTCTTTTTTTACCTCGACAGTTTTTCACCATTTTTATTTTATTTACAAAATATTTGAATTGTTGACAGGACTTCGGGAATGGAAATGAAGTTGTCGGTAATTGGATGGATCCAACAATTGTTCCTGAATGCCTTTCAACACATCTCAGAACATGCTTGCTTGAAGGCTTTAAAAACATGGAATGCGAGGTTCAATTTGCAAAATATATTATGCAGAATGCGAAAGTACTAAACACCATTTCAATTAAGAGTGCCTCTTCCATAGATATAAATGCCAAGTACCAAATGATATCGAAGTTAGTTTCATCGGCAAGGGCTTCAACAACATGTGAACTCTTATTTGATTGTTGTCAGTTAGGAACTTAGGGCATAGTTGCAATAGTTCTATGTCTGTTTTCATGTATTAAAGGGATGCCAGATTCTTTCAACATATTCATAATCATATCTTCTCTGATTGATGATTTTTTTACATGAGTTGTAATGATGATTGATGAATGTAATTTTCTGGCAGTCTCGTGGACTTGTGGGAATGAGAATGGATATCAAAATTTGCAACTACATAGACTAGAGTAG
Protein sequence

>MS.gene050239.t1

MLPLRSFHLISSEAYNLHHSHDVNRFVYAAVQRGIENLNLKICNRVSFGLKLPLSIFSCRTLVVLHLHGLTANLSRVVVDFPLLKTLHLCNVHFARDQCLPKLLSGWPILEELQIKYLPRATLVLEENFECLPNLIRANISDMYSSAASVLFSLLCGAKILCVDLWFIGYINFPTFQNLIHMELTLEHKHCENWKWVIQVLKHCPKLQNLAIHEDFGNGNEVVVSWTCGNENGYQNLQLHRLE