AlfalfaGEDB | MS.gene39744

M. sativa cultivar XinJiangDaYe / MS.gene39744

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39744.t1	XP_013448651.1	56.8	169	72	1	8	175	129	297	2.20E-39	172.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39744.t1	Q84X02	40.6	96	50	3	9	103	122	211	6.5e-08	58.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39744.t1	A0A072U0K8	56.8	169	72	1	8	175	129	297	1.6e-39	172.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene39744	MS.gene32638	PPI
MS.gene39744	MS.gene03756	PPI
MS.gene34801	MS.gene39744	PPI
MS.gene39744	MS.gene041323	PPI
MS.gene39744	MS.gene017193	PPI
MS.gene63104	MS.gene39744	PPI
MS.gene39744	MS.gene25386	PPI
MS.gene39744	MS.gene63221	PPI
MS.gene39744	MS.gene060770	PPI
MS.gene043123	MS.gene39744	PPI
MS.gene39744	MS.gene49015	PPI
MS.gene39744	MS.gene69407	PPI
MS.gene63113	MS.gene39744	PPI
MS.gene39744	MS.gene72955	PPI
MS.gene34707	MS.gene39744	PPI
MS.gene39744	MS.gene63111	PPI
MS.gene39744	MS.gene51793	PPI
MS.gene49017	MS.gene39744	PPI
MS.gene39744	MS.gene25414	PPI
MS.gene39744	MS.gene34804	PPI
MS.gene32641	MS.gene39744	PPI
MS.gene39744	MS.gene022920	PPI
MS.gene39744	MS.gene046838	PPI
MS.gene39744	MS.gene47781	PPI
MS.gene022905	MS.gene39744	PPI
MS.gene39744	MS.gene054411	PPI
MS.gene39744	MS.gene055877	PPI
MS.gene30260	MS.gene39744	PPI
MS.gene39744	MS.gene72954	PPI
MS.gene39744	MS.gene63222	PPI
MS.gene39744	MS.gene34730	PPI
MS.gene39744	MS.gene99982	PPI
MS.gene39744	MS.gene005795	PPI
MS.gene39744	MS.gene63260	PPI
MS.gene39744	MS.gene033694	PPI
MS.gene09362	MS.gene39744	PPI
MS.gene39744	MS.gene032860	PPI
MS.gene39744	MS.gene045772	PPI
MS.gene39744	MS.gene007794	PPI
MS.gene39744	MS.gene01653	PPI
MS.gene39744	MS.gene69561	PPI
MS.gene39744	MS.gene34733	PPI
MS.gene39744	MS.gene006723	PPI
MS.gene39744	MS.gene54960	PPI
MS.gene39744	MS.gene99983	PPI
MS.gene39744	MS.gene045448	PPI
MS.gene39744	MS.gene03758	PPI
MS.gene39744	MS.gene34825	PPI
MS.gene39744	MS.gene89957	PPI
MS.gene39744	MS.gene032853	PPI
MS.gene73831	MS.gene39744	PPI
MS.gene39744	MS.gene07666	PPI
MS.gene39744	MS.gene062537	PPI
MS.gene39744	MS.gene99980	PPI
MS.gene09364	MS.gene39744	PPI
MS.gene39744	MS.gene25297	PPI
MS.gene63213	MS.gene39744	PPI
MS.gene09360	MS.gene39744	PPI
MS.gene34824	MS.gene39744	PPI
MS.gene64993	MS.gene39744	PPI
MS.gene39744	MS.gene09370	PPI
MS.gene072547	MS.gene39744	PPI
MS.gene39744	MS.gene043122	PPI
MS.gene39744	MS.gene25353	PPI
MS.gene72959	MS.gene39744	PPI
MS.gene39744	MS.gene52136	PPI
MS.gene39744	MS.gene069762	PPI
MS.gene39744	MS.gene022915	PPI
MS.gene34731	MS.gene39744	PPI
MS.gene39744	MS.gene63256	PPI
MS.gene39744	MS.gene34740	PPI
MS.gene39744	MS.gene64989	PPI
MS.gene97355	MS.gene39744	PPI
MS.gene39744	MS.gene36763	PPI
MS.gene39744	MS.gene98323	PPI
MS.gene065516	MS.gene39744	PPI
MS.gene34704	MS.gene39744	PPI
MS.gene39744	MS.gene34735	PPI
MS.gene39744	MS.gene032295	PPI
MS.gene39744	MS.gene061286	PPI
MS.gene39744	MS.gene92095	PPI
MS.gene032861	MS.gene39744	PPI
MS.gene39744	MS.gene07664	PPI
MS.gene09368	MS.gene39744	PPI
MS.gene39744	MS.gene89955	PPI
MS.gene25415	MS.gene39744	PPI
MS.gene39744	MS.gene84248	PPI
MS.gene39744	MS.gene022912	PPI
MS.gene39744	MS.gene49018	PPI
MS.gene39744	MS.gene007875	PPI
MS.gene067702	MS.gene39744	PPI
MS.gene63212	MS.gene39744	PPI
MS.gene36066	MS.gene39744	PPI
MS.gene91884	MS.gene39744	PPI
MS.gene39744	MS.gene09363	PPI
MS.gene39744	MS.gene062282	PPI
MS.gene39744	MS.gene062526	PPI
MS.gene041326	MS.gene39744	PPI
MS.gene39744	MS.gene61631	PPI
MS.gene055880	MS.gene39744	PPI
MS.gene39744	MS.gene64992	PPI
MS.gene25412	MS.gene39744	PPI
MS.gene39744	MS.gene072003	PPI
MS.gene39745	MS.gene39744	PPI
MS.gene39744	MS.gene30067	PPI
MS.gene39744	MS.gene63112	PPI
MS.gene045446	MS.gene39744	PPI
MS.gene25410	MS.gene39744	PPI
MS.gene39744	MS.gene010866	PPI
MS.gene39744	MS.gene26444	PPI
MS.gene39744	MS.gene63224	PPI
MS.gene39744	MS.gene031603	PPI
MS.gene006727	MS.gene39744	PPI
MS.gene39744	MS.gene34736	PPI
MS.gene39744	MS.gene006728	PPI
MS.gene39744	MS.gene49013	PPI
MS.gene038427	MS.gene39744	PPI
MS.gene39744	MS.gene031572	PPI
MS.gene39744	MS.gene050239	PPI
MS.gene39744	MS.gene73780	PPI
MS.gene30045	MS.gene39744	PPI
MS.gene39744	MS.gene065374	PPI
MS.gene39744	MS.gene25418	PPI
MS.gene39744	MS.gene91885	PPI
MS.gene39744	MS.gene065373	PPI
MS.gene39744	MS.gene045440	PPI
MS.gene39744	MS.gene89963	PPI
MS.gene39744	MS.gene031573	PPI
MS.gene39744	MS.gene072885	PPI
MS.gene32300	MS.gene39744	PPI
MS.gene002108	MS.gene39744	PPI
MS.gene39744	MS.gene60521	PPI
MS.gene39744	MS.gene49011	PPI
MS.gene39744	MS.gene028696	PPI
MS.gene033696	MS.gene39744	PPI
MS.gene39744	MS.gene25449	PPI
MS.gene72960	MS.gene39744	PPI
MS.gene39744	MS.gene25296	PPI
MS.gene39744	MS.gene050947	PPI
MS.gene39744	MS.gene07669	PPI
MS.gene045441	MS.gene39744	PPI
MS.gene059405	MS.gene39744	PPI
MS.gene91885	MS.gene39744	PPI
MS.gene39744	MS.gene25451	PPI
MS.gene39744	MS.gene72962	PPI
MS.gene39744	MS.gene07660	PPI
MS.gene39744	MS.gene03749	PPI
MS.gene25411	MS.gene39744	PPI
MS.gene39744	MS.gene34802	PPI
MS.gene39744	MS.gene006730	PPI
MS.gene39744	MS.gene006725	PPI
MS.gene39744	MS.gene94457	PPI
MS.gene006692	MS.gene39744	PPI
MS.gene39744	MS.gene002108	PPI
MS.gene39744	MS.gene041325	PPI
MS.gene39744	MS.gene95902	PPI
MS.gene96120	MS.gene39744	PPI
MS.gene39744	MS.gene43257	PPI
MS.gene39744	MS.gene34706	PPI
MS.gene34739	MS.gene39744	PPI
MS.gene022915	MS.gene39744	PPI
MS.gene39744	MS.gene073176	PPI
MS.gene36764	MS.gene39744	PPI
MS.gene36942	MS.gene39744	PPI
MS.gene39744	MS.gene72952	PPI
MS.gene39744	MS.gene045439	PPI
MS.gene39744	MS.gene51795	PPI
MS.gene047137	MS.gene39744	PPI
MS.gene39744	MS.gene72957	PPI
MS.gene014840	MS.gene39744	PPI
MS.gene39744	MS.gene050744	PPI
MS.gene39744	MS.gene34766	PPI
MS.gene39744	MS.gene055882	PPI
MS.gene47780	MS.gene39744	PPI
MS.gene34753	MS.gene39744	PPI
MS.gene39744	MS.gene89076	PPI
MS.gene39744	MS.gene07668	PPI
MS.gene39744	MS.gene074346	PPI
MS.gene39744	MS.gene060769	PPI
MS.gene39744	MS.gene29873	PPI
MS.gene39744	MS.gene09367	PPI
MS.gene39744	MS.gene39747	PPI
MS.gene39744	MS.gene63095	PPI
MS.gene39744	MS.gene022919	PPI
MS.gene022909	MS.gene39744	PPI
MS.gene006730	MS.gene39744	PPI
MS.gene39744	MS.gene022921	PPI
MS.gene39744	MS.gene72956	PPI
MS.gene39744	MS.gene03753	PPI
MS.gene36804	MS.gene39744	PPI
MS.gene39744	MS.gene49012	PPI
MS.gene39744	MS.gene003455	PPI
MS.gene39744	MS.gene47771	PPI
MS.gene39744	MS.gene053514	PPI
MS.gene39744	MS.gene72961	PPI
MS.gene47782	MS.gene39744	PPI
MS.gene72958	MS.gene39744	PPI
MS.gene39744	MS.gene072231	PPI
MS.gene39744	MS.gene39753	PPI
MS.gene03752	MS.gene39744	PPI
MS.gene055754	MS.gene39744	PPI
MS.gene005794	MS.gene39744	PPI
MS.gene91886	MS.gene39744	PPI
MS.gene39744	MS.gene069763	PPI
MS.gene39744	MS.gene002112	PPI
MS.gene39744	MS.gene047136	PPI
MS.gene39744	MS.gene47783	PPI
MS.gene39744	MS.gene93027	PPI
MS.gene39744	MS.gene25299	PPI
MS.gene39744	MS.gene63105	PPI
MS.gene39744	MS.gene91884	PPI
MS.gene39744	MS.gene36752	PPI
MS.gene39744	MS.gene47782	PPI
MS.gene39744	MS.gene022917	PPI
MS.gene39744	MS.gene72963	PPI
MS.gene03750	MS.gene39744	PPI
MS.gene39744	MS.gene36743	PPI
MS.gene39744	MS.gene63259	PPI
MS.gene39744	MS.gene98598	PPI
MS.gene39744	MS.gene072000	PPI
MS.gene39744	MS.gene006736	PPI
MS.gene63210	MS.gene39744	PPI
MS.gene63217	MS.gene39744	PPI
MS.gene89956	MS.gene39744	PPI
MS.gene39744	MS.gene54958	PPI
MS.gene39744	MS.gene007876	PPI
MS.gene39744	MS.gene03755	PPI
MS.gene39744	MS.gene89961	PPI
MS.gene39744	MS.gene021295	PPI
MS.gene26058	MS.gene39744	PPI
MS.gene39744	MS.gene033695	PPI
MS.gene39744	MS.gene045451	PPI
MS.gene39744	MS.gene06476	PPI
MS.gene39744	MS.gene63218	PPI
MS.gene68082	MS.gene39744	PPI
MS.gene39744	MS.gene91201	PPI
MS.gene39744	MS.gene014841	PPI
MS.gene32643	MS.gene39744	PPI
MS.gene39744	MS.gene053312	PPI
MS.gene36067	MS.gene39744	PPI
MS.gene39744	MS.gene78164	PPI
MS.gene39744	MS.gene056517	PPI
MS.gene39744	MS.gene024263	PPI
MS.gene39744	MS.gene25348	PPI
MS.gene39744	MS.gene36065	PPI
MS.gene86337	MS.gene39744	PPI
MS.gene39744	MS.gene031575	PPI
MS.gene39744	MS.gene54959	PPI
MS.gene39744	MS.gene07678	PPI
MS.gene39744	MS.gene047839	PPI
MS.gene39744	MS.gene006727	PPI
MS.gene39744	MS.gene060771	PPI
MS.gene39744	MS.gene66626	PPI
MS.gene94458	MS.gene39744	PPI
MS.gene39744	MS.gene09371	PPI
MS.gene045437	MS.gene39744	PPI
MS.gene39744	MS.gene21682	PPI
MS.gene39744	MS.gene053313	PPI
MS.gene39744	MS.gene07665	PPI
MS.gene065234	MS.gene39744	PPI
MS.gene39744	MS.gene014842	PPI
MS.gene39744	MS.gene63223	PPI
MS.gene39744	MS.gene63185	PPI
MS.gene39744	MS.gene95710	PPI
MS.gene39744	MS.gene25450	PPI
MS.gene39749	MS.gene39744	PPI
MS.gene39744	MS.gene34216	PPI
MS.gene39744	MS.gene63257	PPI
MS.gene39744	MS.gene045449	PPI
MS.gene39744	MS.gene046839	PPI
MS.gene39744	MS.gene64988	PPI
MS.gene25396	MS.gene39744	PPI
MS.gene39744	MS.gene056133	PPI
MS.gene39744	MS.gene07659	PPI
MS.gene39744	MS.gene071257	PPI
MS.gene39744	MS.gene25352	PPI
MS.gene39744	MS.gene035630	PPI
MS.gene39744	MS.gene031577	PPI
MS.gene39744	MS.gene36809	PPI
MS.gene39744	MS.gene48656	PPI
MS.gene39744	MS.gene07667	PPI
MS.gene39744	MS.gene09992	PPI
MS.gene78146	MS.gene39744	PPI
MS.gene032852	MS.gene39744	PPI
MS.gene39744	MS.gene47775	PPI
MS.gene39744	MS.gene005794	PPI
MS.gene39744	MS.gene053311	PPI
MS.gene39744	MS.gene64984	PPI
MS.gene39744	MS.gene07658	PPI
MS.gene39744	MS.gene07674	PPI
MS.gene39744	MS.gene34215	PPI
MS.gene39744	MS.gene003456	PPI
MS.gene49513	MS.gene39744	PPI
MS.gene39744	MS.gene36943	PPI
MS.gene69850	MS.gene39744	PPI
MS.gene39744	MS.gene88183	PPI
MS.gene39744	MS.gene36807	PPI
MS.gene39744	MS.gene032379	PPI
MS.gene055883	MS.gene39744	PPI
MS.gene072244	MS.gene39744	PPI
MS.gene39744	MS.gene25298	PPI
MS.gene39744	MS.gene25448	PPI
MS.gene39744	MS.gene03759	PPI
MS.gene26069	MS.gene39744	PPI
MS.gene63214	MS.gene39744	PPI
MS.gene39744	MS.gene03748	PPI
MS.gene39744	MS.gene48654	PPI
MS.gene39744	MS.gene36810	PPI
MS.gene032862	MS.gene39744	PPI
MS.gene39744	MS.gene25344	PPI
MS.gene032296	MS.gene39744	PPI
MS.gene39744	MS.gene39752	PPI
MS.gene39744	MS.gene98324	PPI
MS.gene34738	MS.gene39744	PPI
MS.gene96357	MS.gene39744	PPI
MS.gene39744	MS.gene34737	PPI
MS.gene39744	MS.gene91886	PPI
MS.gene39744	MS.gene25347	PPI
MS.gene39744	MS.gene03757	PPI
MS.gene39744	MS.gene39754	PPI
MS.gene39744	MS.gene47772	PPI
MS.gene39744	MS.gene024262	PPI
MS.gene046839	MS.gene39744	PPI
MS.gene63177	MS.gene39744	PPI
MS.gene39744	MS.gene84247	PPI
MS.gene39744	MS.gene045452	PPI
MS.gene39744	MS.gene031570	PPI
MS.gene39744	MS.gene34703	PPI
MS.gene022916	MS.gene39744	PPI
MS.gene39744	MS.gene47777	PPI
MS.gene32305	MS.gene39744	PPI
MS.gene39744	MS.gene94460	PPI
MS.gene39744	MS.gene63094	PPI
MS.gene39744	MS.gene03760	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39744.t1	MTR_7g056433	56.805	169	72	1	8	175	129	297	8.14e-52	170
MS.gene39744.t1	MTR_7g115270	48.023	177	82	3	9	175	134	310	5.31e-39	137
MS.gene39744.t1	MTR_7g056417	47.682	151	71	2	8	150	4	154	1.28e-32	114
MS.gene39744.t1	MTR_7g056447	72.500	80	21	1	5	83	119	198	7.26e-31	113
MS.gene39744.t1	MTR_5g013500	45.860	157	73	4	31	175	116	272	3.14e-30	113
MS.gene39744.t1	MTR_7g098510	42.308	182	91	5	1	175	125	299	1.33e-28	109
MS.gene39744.t1	MTR_7g098570	43.275	171	89	3	7	173	133	299	1.64e-28	110
MS.gene39744.t1	MTR_7g056430	41.011	178	73	4	5	175	118	270	8.53e-27	106
MS.gene39744.t1	MTR_7g056420	41.011	178	73	4	5	175	118	270	8.74e-27	106
MS.gene39744.t1	MTR_3g036250	42.458	179	74	6	6	175	119	277	1.28e-25	100
MS.gene39744.t1	MTR_7g098480	40.476	168	92	4	9	173	133	295	9.29e-24	97.1
MS.gene39744.t1	MTR_3g040700	40.000	175	80	6	8	175	159	315	2.21e-22	92.8
MS.gene39744.t1	MTR_7g034120	40.964	166	89	6	14	176	64	223	2.30e-22	91.7
MS.gene39744.t1	MTR_1g041245	40.341	176	92	8	6	175	124	292	2.45e-22	92.4
MS.gene39744.t1	MTR_3g023630	39.326	178	95	7	1	175	119	286	3.45e-22	92.0
MS.gene39744.t1	MTR_7g033990	40.580	138	77	3	39	176	162	294	2.85e-21	89.7
MS.gene39744.t1	MTR_5g008950	35.465	172	97	6	9	175	111	273	3.90e-21	89.0
MS.gene39744.t1	MTR_2g007450	37.097	186	90	5	10	175	151	329	9.59e-20	85.5
MS.gene39744.t1	MTR_7g033915	43.478	115	62	2	62	176	165	276	1.22e-19	84.7
MS.gene39744.t1	MTR_3g107100	36.416	173	97	6	10	176	131	296	3.26e-19	84.0
MS.gene39744.t1	MTR_7g034115	34.831	178	104	6	3	175	121	291	4.77e-19	83.2
MS.gene39744.t1	MTR_7g007080	35.632	174	91	6	11	176	129	289	5.13e-19	83.2
MS.gene39744.t1	MTR_6g011460	37.791	172	91	6	11	175	166	328	9.24e-19	82.8
MS.gene39744.t1	MTR_5g007410	35.260	173	104	3	11	175	145	317	2.43e-18	81.6
MS.gene39744.t1	MTR_1g107385	39.326	178	82	9	10	175	165	328	3.94e-18	80.9
MS.gene39744.t1	MTR_6g045333	37.288	177	95	4	8	173	180	351	7.13e-18	80.5
MS.gene39744.t1	MTR_0009s0080	36.723	177	94	5	11	175	138	308	1.41e-17	79.3
MS.gene39744.t1	MTR_3g071850	32.955	176	104	2	8	173	143	314	3.92e-17	78.6
MS.gene39744.t1	MTR_2g007400	33.880	183	104	7	1	176	134	306	4.84e-17	77.8
MS.gene39744.t1	MTR_5g083890	37.500	176	89	7	10	175	141	305	2.58e-16	75.9
MS.gene39744.t1	MTR_3g108560	36.905	168	96	5	15	176	135	298	3.49e-16	74.7
MS.gene39744.t1	MTR_5g073370	37.870	169	97	6	9	175	126	288	3.63e-16	75.1
MS.gene39744.t1	MTR_1g053025	29.609	179	106	4	10	175	128	299	5.87e-16	74.7
MS.gene39744.t1	MTR_3g108560	36.905	168	96	5	15	176	135	298	6.35e-16	74.7
MS.gene39744.t1	MTR_5g073420	34.146	164	94	5	14	175	137	288	6.36e-16	74.7
MS.gene39744.t1	MTR_0492s0020	36.000	175	97	6	7	176	195	359	1.78e-15	73.6
MS.gene39744.t1	MTR_0543s0010	36.000	175	97	6	7	176	195	359	2.45e-15	73.2
MS.gene39744.t1	MTR_3g105060	32.738	168	101	4	9	174	131	288	2.52e-15	72.8
MS.gene39744.t1	MTR_7g056277	36.905	168	90	6	6	169	376	531	3.13e-15	72.8
MS.gene39744.t1	MTR_1g085120	33.721	172	99	5	15	176	303	469	3.80e-15	72.4
MS.gene39744.t1	MTR_3g087260	36.872	179	89	8	8	175	198	363	5.05e-15	72.0
MS.gene39744.t1	MTR_5g039470	34.426	183	101	5	5	173	95	272	5.40e-15	71.6
MS.gene39744.t1	MTR_7g075820	34.682	173	99	6	10	176	141	305	5.57e-15	72.0
MS.gene39744.t1	MTR_4g039440	30.270	185	103	5	7	175	145	319	5.60e-15	72.0
MS.gene39744.t1	MTR_7g056287	36.364	165	89	6	9	169	123	275	6.24e-15	71.6
MS.gene39744.t1	MTR_5g045170	34.444	180	101	5	6	175	128	300	6.26e-15	71.6
MS.gene39744.t1	MTR_1g085120	32.759	174	96	5	15	175	216	381	1.06e-14	71.2
MS.gene39744.t1	MTR_1g085120	32.759	174	96	5	15	175	291	456	1.20e-14	71.2
MS.gene39744.t1	MTR_2g007500	34.409	186	97	7	6	175	116	292	1.48e-14	70.5
MS.gene39744.t1	MTR_5g073340	33.908	174	95	6	14	175	105	270	3.19e-14	69.3
MS.gene39744.t1	MTR_5g058000	33.728	169	103	5	9	175	124	285	3.40e-14	69.7
MS.gene39744.t1	MTR_5g061410	34.524	168	102	4	14	176	104	268	4.50e-14	68.6
MS.gene39744.t1	MTR_7g088260	34.463	177	97	6	8	175	205	371	2.11e-13	67.4
MS.gene39744.t1	MTR_6g022500	31.953	169	100	5	15	175	225	386	3.42e-13	67.0
MS.gene39744.t1	MTR_5g008920	32.544	169	107	5	7	173	125	288	3.81e-13	66.6
MS.gene39744.t1	MTR_7g060470	33.702	181	98	7	12	175	126	301	5.80e-13	66.2
MS.gene39744.t1	MTR_1g108820	30.387	181	101	7	14	176	126	299	7.35e-13	65.9
MS.gene39744.t1	MTR_1g108800	33.742	163	89	6	14	166	93	246	7.60e-13	65.5
MS.gene39744.t1	MTR_2g008320	33.143	175	97	6	11	175	173	337	7.75e-13	65.9
MS.gene39744.t1	MTR_3g099830	33.136	169	100	7	10	175	117	275	1.03e-12	65.5
MS.gene39744.t1	MTR_3g026920	31.183	186	86	8	6	174	159	319	1.26e-12	65.1
MS.gene39744.t1	MTR_3g107120	34.503	171	101	5	9	175	140	303	1.80e-12	64.7
MS.gene39744.t1	MTR_3g082890	31.915	188	105	6	9	176	130	314	2.24e-12	64.7
MS.gene39744.t1	MTR_6g040270	32.544	169	104	6	11	175	127	289	2.39e-12	64.3
MS.gene39744.t1	MTR_1g108820	30.220	182	100	8	14	176	126	299	2.50e-12	64.3
MS.gene39744.t1	MTR_7g032370	33.918	171	89	7	11	175	108	260	2.75e-12	63.9
MS.gene39744.t1	MTR_1089s0010	31.646	158	100	4	14	169	130	281	3.31e-12	63.9
MS.gene39744.t1	MTR_7g007340	34.118	170	94	6	10	175	107	262	3.66e-12	63.9
MS.gene39744.t1	MTR_5g063950	29.834	181	90	2	14	176	107	268	4.41e-12	63.5
MS.gene39744.t1	MTR_3g082890	31.551	187	105	6	9	175	210	393	5.17e-12	63.5
MS.gene39744.t1	MTR_2g036470	34.270	178	105	4	7	176	131	304	1.04e-11	62.4
MS.gene39744.t1	MTR_1g066830	33.333	168	94	5	14	169	130	291	1.05e-11	62.4
MS.gene39744.t1	MTR_3g109982	34.483	174	97	7	11	176	220	384	1.47e-11	62.4
MS.gene39744.t1	MTR_7g026500	33.146	178	96	9	9	175	140	305	2.04e-11	61.6
MS.gene39744.t1	MTR_3g110010	34.682	173	96	7	11	175	220	383	2.05e-11	62.0
MS.gene39744.t1	MTR_6g022360	33.526	173	101	6	11	175	150	316	4.14e-11	60.8
MS.gene39744.t1	MTR_5g045510	32.895	152	92	3	11	155	129	277	4.84e-11	60.5
MS.gene39744.t1	MTR_3g108150	35.429	175	101	5	9	176	126	295	5.53e-11	60.5
MS.gene39744.t1	MTR_3g467400	42.157	102	55	3	5	103	128	228	5.96e-11	60.5
MS.gene39744.t1	MTR_7g114710	32.278	158	77	6	20	175	142	271	8.21e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39744.t1	AT2G26860	30.374	214	95	8	9	173	122	330	2.65e-11	61.6
MS.gene39744.t1	AT2G26860	30.374	214	95	8	9	173	122	330	2.65e-11	61.6

Find 28 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGTTGTTCTTCGTTTGTA+TGG	0.252657	7.1:+45456501	MS.gene39744:CDS
TCCTCTAAAACAAGTCTCTT+TGG	0.260876	7.1:-45456687	None:intergenic
TATCTTCCAAAGCTTCTATT+AGG	0.306353	7.1:+45456615	MS.gene39744:CDS
ATGTTTGCTTTGATCAAATT+CGG	0.346846	7.1:-45456726	None:intergenic
AATTTGAGTCTAAAGCTAAC+AGG	0.382691	7.1:-45456450	None:intergenic
TACATAATTTCTGTGAGAAC+TGG	0.384165	7.1:+45456967	MS.gene39744:CDS
TATTAGCAGTTCCTCTAGAA+TGG	0.388011	7.1:-45456643	None:intergenic
AAAGTTTCTGTGTGTAGAAC+TGG	0.397697	7.1:+45456800	MS.gene39744:CDS
AACCTCAATCTCCGAATGTC+TGG	0.406460	7.1:+45456426	None:intergenic
GGGCATCCTAATAGAAGCTT+TGG	0.407135	7.1:-45456621	None:intergenic
TCAAAATCTCACCATTCATC+AGG	0.411739	7.1:+45457028	MS.gene39744:CDS
ATTAGCAGTTCCTCTAGAAT+GGG	0.415017	7.1:-45456642	None:intergenic
TGACCTTTCTCGTGTGGTTG+TGG	0.449425	7.1:+45456536	MS.gene39744:CDS
TTGTTGTTCTTCGTTTGTAT+GGG	0.471921	7.1:+45456502	MS.gene39744:CDS
TGTAGGGAAATAGCTGTAAC+CGG	0.475182	7.1:-45456910	None:intergenic
GCTGTTTACTTTGCTTTGCA+AGG	0.528075	7.1:+45456776	MS.gene39744:CDS
AATCCACAACCACACGAGAA+AGG	0.549947	7.1:-45456539	None:intergenic
ATTTCAAAATCTAATCCACT+TGG	0.551657	7.1:+45456932	MS.gene39744:CDS
AATCGACTAAACCTGATGAA+TGG	0.563238	7.1:-45457039	None:intergenic
TGTAAATCACAACAGGAGAC+CGG	0.590280	7.1:+45456891	MS.gene39744:intron
TTCTGAGTTGTGTTCTAGTG+CGG	0.593981	7.1:+45456749	MS.gene39744:CDS
ATTAGGATGCCCCATTCTAG+AGG	0.601001	7.1:+45456632	MS.gene39744:CDS
TTAGCAGTTCCTCTAGAATG+GGG	0.611891	7.1:-45456641	None:intergenic
CATACAAACGAAGAACAACA+AGG	0.641315	7.1:-45456500	None:intergenic
GTATAAGAATAAGTTCCAAG+TGG	0.643484	7.1:-45456947	None:intergenic
AGTGAATGACCTTTCTCGTG+TGG	0.647999	7.1:+45456530	MS.gene39744:CDS
ATTTGAGTCTAAAGCTAACA+GGG	0.666369	7.1:-45456449	None:intergenic
ATACAAACGAAGAACAACAA+GGG	0.729811	7.1:-45456499	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTCTTTTAAACATATAA+CGG	-	chr7.1:45456848-45456867	None:intergenic	10.0%
!!!	GCTAATAAACTTTGTATTTT+TGG	+	chr7.1:45456659-45456678	MS.gene39744:CDS	20.0%
!	ATGTTTGCTTTGATCAAATT+CGG	-	chr7.1:45456729-45456748	None:intergenic	25.0%
!	ATTTCAAAATCTAATCCACT+TGG	+	chr7.1:45456932-45456951	MS.gene39744:CDS	25.0%
!!!	GGATTAGATTTTGAAATGTA+GGG	-	chr7.1:45456929-45456948	None:intergenic	25.0%
!!!	TGGATTAGATTTTGAAATGT+AGG	-	chr7.1:45456930-45456949	None:intergenic	25.0%
	ATACAAACGAAGAACAACAA+GGG	-	chr7.1:45456502-45456521	None:intergenic	30.0%
	GTATAAGAATAAGTTCCAAG+TGG	-	chr7.1:45456950-45456969	None:intergenic	30.0%
	TAACTTCTGTAAATCACAAC+AGG	+	chr7.1:45456884-45456903	MS.gene39744:intron	30.0%
	TACATAATTTCTGTGAGAAC+TGG	+	chr7.1:45456967-45456986	MS.gene39744:CDS	30.0%
	TATCTTCCAAAGCTTCTATT+AGG	+	chr7.1:45456615-45456634	MS.gene39744:CDS	30.0%
!	AATTTGAGTCTAAAGCTAAC+AGG	-	chr7.1:45456453-45456472	None:intergenic	30.0%
!	ATTTGAGTCTAAAGCTAACA+GGG	-	chr7.1:45456452-45456471	None:intergenic	30.0%
!	TTGTTGTTCTTCGTTTGTAT+GGG	+	chr7.1:45456502-45456521	MS.gene39744:CDS	30.0%
!!!	AAATCAAGAGTTTTGAGACA+TGG	-	chr7.1:45456567-45456586	None:intergenic	30.0%
!!!	AATCAAGAGTTTTGAGACAT+GGG	-	chr7.1:45456566-45456585	None:intergenic	30.0%
!!!	AATGGTGAGATTTTGAAGTT+TGG	-	chr7.1:45457024-45457043	None:intergenic	30.0%
!!!	ATGGTGAGATTTTGAAGTTT+GGG	-	chr7.1:45457023-45457042	None:intergenic	30.0%
	AAAGTTTCTGTGTGTAGAAC+TGG	+	chr7.1:45456800-45456819	MS.gene39744:CDS	35.0%
	CATACAAACGAAGAACAACA+AGG	-	chr7.1:45456503-45456522	None:intergenic	35.0%
	TCAAAATCTCACCATTCATC+AGG	+	chr7.1:45457028-45457047	MS.gene39744:CDS	35.0%
!	TATTAGCAGTTCCTCTAGAA+TGG	-	chr7.1:45456646-45456665	None:intergenic	35.0%
!!	ATTAGCAGTTCCTCTAGAAT+GGG	-	chr7.1:45456645-45456664	None:intergenic	35.0%
!!	CTTGTTGTTCTTCGTTTGTA+TGG	+	chr7.1:45456501-45456520	MS.gene39744:CDS	35.0%
!!	TCCTCTAAAACAAGTCTCTT+TGG	-	chr7.1:45456690-45456709	None:intergenic	35.0%
!!!	TCCAAAGAGACTTGTTTTAG+AGG	+	chr7.1:45456686-45456705	MS.gene39744:CDS	35.0%
	GCTGTTTACTTTGCTTTGCA+AGG	+	chr7.1:45456776-45456795	MS.gene39744:CDS	40.0%
	TCACAGCTAAAAATGCTACG+AGG	-	chr7.1:45456477-45456496	None:intergenic	40.0%
	TGTAAATCACAACAGGAGAC+CGG	+	chr7.1:45456891-45456910	MS.gene39744:intron	40.0%
	TGTAGGGAAATAGCTGTAAC+CGG	-	chr7.1:45456913-45456932	None:intergenic	40.0%
	TTCTGAGTTGTGTTCTAGTG+CGG	+	chr7.1:45456749-45456768	MS.gene39744:CDS	40.0%
!!	TTAGCAGTTCCTCTAGAATG+GGG	-	chr7.1:45456644-45456663	None:intergenic	40.0%
	AATCCACAACCACACGAGAA+AGG	-	chr7.1:45456542-45456561	None:intergenic	45.0%
	AGTGAATGACCTTTCTCGTG+TGG	+	chr7.1:45456530-45456549	MS.gene39744:CDS	45.0%
	ATTAGGATGCCCCATTCTAG+AGG	+	chr7.1:45456632-45456651	MS.gene39744:CDS	45.0%
	GGGCATCCTAATAGAAGCTT+TGG	-	chr7.1:45456624-45456643	None:intergenic	45.0%
	TGACCTTTCTCGTGTGGTTG+TGG	+	chr7.1:45456536-45456555	MS.gene39744:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	45456441	45457055	45456441	ID=MS.gene39744
chr7.1	mRNA	45456441	45457055	45456441	ID=MS.gene39744.t1;Parent=MS.gene39744
chr7.1	exon	45456441	45456821	45456441	ID=MS.gene39744.t1.exon1;Parent=MS.gene39744.t1
chr7.1	CDS	45456441	45456821	45456441	ID=cds.MS.gene39744.t1;Parent=MS.gene39744.t1
chr7.1	exon	45456906	45457055	45456906	ID=MS.gene39744.t1.exon2;Parent=MS.gene39744.t1
chr7.1	CDS	45456906	45457055	45456906	ID=cds.MS.gene39744.t1;Parent=MS.gene39744.t1

Gene Sequence

>MS.gene39744

ATGTCTGGCCCTGTTAGCTTTAGACTCAAATTACCTCGTAGCATTTTTAGCTGTGACACCCTTGTTGTTCTTCGTTTGTATGGGATATCAGTGAATGACCTTTCTCGTGTGGTTGTGGATTTCCCATGTCTCAAAACTCTTGATTTGTCTCGTGTATTTTTCAAACGTGTTGAATATCTTCCAAAGCTTCTATTAGGATGCCCCATTCTAGAGGAACTGCTAATAAACTTTGTATTTTTGGTTAATCCAAAGAGACTTGTTTTAGAGGAAAATTATCAATGCTTACCGAATTTGATCAAAGCAAACATTTCTGAGTTGTGTTCTAGTGCGGATGCGCTGTTTACTTTGCTTTGCAAGGCAAAGTTTCTGTGTGTAGAACTGGTAAGAATATTATACGACTCTCTCCGTTATATGTTTAAAAGAAATTACGTTTATTTCATTTCTAACTTCTGTAAATCACAACAGGAGACCGGTTACAGCTATTTCCCTACATTTCAAAATCTAATCCACTTGGAACTTATTCTTATACATAATTTCTGTGAGAACTGGAAGTGTGTTATAGAAGTGCTGAAACTTAGTCCCAAACTTCAAAATCTCACCATTCATCAGGTTTAG

Protein sequence

>MS.gene39744.t1

MSGPVSFRLKLPRSIFSCDTLVVLRLYGISVNDLSRVVVDFPCLKTLDLSRVFFKRVEYLPKLLLGCPILEELLINFVFLVNPKRLVLEENYQCLPNLIKANISELCSSADALFTLLCKAKFLCVELETGYSYFPTFQNLIHLELILIHNFCENWKCVIEVLKLSPKLQNLTIHQV