AlfalfaGEDB | MS.gene72960

M. sativa cultivar XinJiangDaYe / MS.gene72960

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72960.t1	XP_013445781.1	80.9	467	84	3	1	466	1	463	1.80E-206	728.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72960.t1	Q9ZV93	28.1	463	278	17	29	463	20	455	3.3e-28	127.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72960.t1	A0A072TQY2	80.9	467	84	3	1	466	1	463	1.3e-206	728.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006692	MS.gene72960	PPI
MS.gene011055	MS.gene72960	PPI
MS.gene014840	MS.gene72960	PPI
MS.gene021114	MS.gene72960	PPI
MS.gene022909	MS.gene72960	PPI
MS.gene022916	MS.gene72960	PPI
MS.gene032296	MS.gene72960	PPI
MS.gene033696	MS.gene72960	PPI
MS.gene03750	MS.gene72960	PPI
MS.gene03752	MS.gene72960	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72960.t1	MTR_8g468810	83.084	467	74	3	1	466	1	463	0.0	777
MS.gene72960.t1	MTR_8g468810	82.667	375	60	3	1	374	1	371	0.0	615
MS.gene72960.t1	MTR_8g058970	62.887	485	153	4	1	466	1	477	0.0	568
MS.gene72960.t1	MTR_8g468810	82.390	318	52	2	1	318	1	314	0.0	520
MS.gene72960.t1	MTR_8g468810	82.390	318	52	2	1	318	1	314	0.0	520
MS.gene72960.t1	MTR_8g468810	82.390	318	52	2	1	318	1	314	0.0	519
MS.gene72960.t1	MTR_2g083840	55.696	474	185	9	1	466	1	457	4.40e-162	468
MS.gene72960.t1	MTR_4g032730	49.072	485	197	12	11	465	2	466	7.10e-136	401
MS.gene72960.t1	MTR_8g062270	50.549	455	192	12	27	465	16	453	2.09e-134	397
MS.gene72960.t1	MTR_8g468760	50.855	468	165	14	12	465	2	418	4.49e-128	380

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72960.t1	AT4G26340	29.759	457	265	17	27	466	2	419	1.83e-35	137
MS.gene72960.t1	AT1G16930	28.189	486	256	22	25	466	13	449	1.84e-32	129
MS.gene72960.t1	AT1G16930	28.189	486	256	22	25	466	13	449	1.84e-32	129
MS.gene72960.t1	AT1G16930	28.189	486	256	22	25	466	13	449	1.84e-32	129
MS.gene72960.t1	AT5G56420	27.371	464	272	18	24	466	3	422	7.65e-31	124
MS.gene72960.t1	AT5G56420	27.371	464	272	18	24	466	3	422	7.65e-31	124
MS.gene72960.t1	AT5G56420	27.371	464	272	18	24	466	3	422	7.65e-31	124
MS.gene72960.t1	AT1G78750	27.859	481	289	18	11	463	5	455	1.66e-30	124
MS.gene72960.t1	AT1G78750	27.859	481	289	18	11	463	5	455	1.66e-30	124
MS.gene72960.t1	AT5G56370	27.527	465	265	20	27	465	2	420	1.06e-28	118

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Find 109 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTACCTCATGGAG+AGG	0.640625	8.3:-41830567	None:intergenic
AAAGTGAATATAGGTCAAGT+GGG	0.636598	8.3:-41832176	None:intergenic
AAATTGTATCAGTCTGGTGA+AGG	0.607936	8.3:-41832883	None:intergenic
AAGAGATTACAACTAGACAT+TGG	0.609472	8.3:+41831361	MS.gene72960:CDS
AAGAGATTTAAATTTACTGT+AGG	0.482663	8.3:+41831499	MS.gene72960:CDS
AAGTGGGATACAAGACAATT+AGG	0.370823	8.3:-41832160	None:intergenic
ACAACTAGACATTGGTAATG+TGG	0.620834	8.3:+41831369	MS.gene72960:CDS
ACAGTTACCTCATGGAGAGG+AGG	0.634577	8.3:-41830564	None:intergenic
ACCACATCAATATGGTCTCA+CGG	0.613811	8.3:+41832120	MS.gene72960:CDS
ACGCATCTTCCGAATGTCGC+GGG	0.555891	8.3:-41830380	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAACTCGAGGAAAACT+AGG	+	chr8.3:41830938-41830957	MS.gene72960:intron	30.0%
AAAGTGAATATAGGTCAAGT+GGG	-	chr8.3:41832179-41832198	None:intergenic	30.0%
AAGAGATTACAACTAGACAT+TGG	+	chr8.3:41831361-41831380	MS.gene72960:CDS	30.0%
ACGTACCAAAAGAGATTATT+AGG	+	chr8.3:41831848-41831867	MS.gene72960:intron	30.0%
ACTTAGAAATTGTATCAGTC+TGG	-	chr8.3:41832892-41832911	None:intergenic	30.0%
AGTTGTAATCTCTTCAATGA+TGG	-	chr8.3:41831355-41831374	None:intergenic	30.0%
ATACTAGTTGTTTATCGTAG+AGG	+	chr8.3:41832856-41832875	MS.gene72960:intron	30.0%
ATGAAAAAACAGTTACCTCA+TGG	-	chr8.3:41830575-41830594	None:intergenic	30.0%
ATGGTAGTATTACCATCTTA+TGG	+	chr8.3:41832619-41832638	MS.gene72960:intron	30.0%
CAAGTTAATTACCTAGAACT+TGG	-	chr8.3:41832390-41832409	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	41830073	41833006	41830073	ID=MS.gene72960
chr8.3	mRNA	41830073	41833006	41830073	ID=MS.gene72960.t1;Parent=MS.gene72960
chr8.3	exon	41830073	41830578	41830073	ID=MS.gene72960.t1.exon1;Parent=MS.gene72960.t1
chr8.3	CDS	41830073	41830578	41830073	ID=cds.MS.gene72960.t1;Parent=MS.gene72960.t1
chr8.3	exon	41831300	41831750	41831300	ID=MS.gene72960.t1.exon2;Parent=MS.gene72960.t1
chr8.3	CDS	41831300	41831750	41831300	ID=cds.MS.gene72960.t1;Parent=MS.gene72960.t1
chr8.3	exon	41831860	41832024	41831860	ID=MS.gene72960.t1.exon3;Parent=MS.gene72960.t1
chr8.3	CDS	41831860	41832024	41831860	ID=cds.MS.gene72960.t1;Parent=MS.gene72960.t1
chr8.3	exon	41832112	41832397	41832112	ID=MS.gene72960.t1.exon4;Parent=MS.gene72960.t1
chr8.3	CDS	41832112	41832397	41832112	ID=cds.MS.gene72960.t1;Parent=MS.gene72960.t1
chr8.3	exon	41832876	41833006	41832876	ID=MS.gene72960.t1.exon5;Parent=MS.gene72960.t1
chr8.3	CDS	41832876	41833006	41832876	ID=cds.MS.gene72960.t1;Parent=MS.gene72960.t1

Gene Sequence

>MS.gene72960

ATGGAGGAAAGTTCAAAACGAAGAAAACCAGGAGAAGAAGAAAATGATGGGCAAGGCAGTAACAGTAACAGTAACAAAGACAGATTAAGCAGTCTGTCAGACTCTCTCTTGTGCCATATACTTTCCTTCCTTCCCACAAAAACAACTGTGTGTACAATGAGCCTTGTTTCTCATAGGTATCTTCATCTCTGGAAATATCTCCAAGCTTTTGATTTCTACGATGAGTACTCTCCCGGCGTCGATGGCGAGGCCGAACATTTCAAAGACTTTGCTATTTTCGTCAACGGCTTTCTCTCTTTACGAAGGACCCGCGACATTCGGAAGATGCGTCTCTCTTGCGGCCAATCTCAACTTGATAACTTCGCTGAACGCTCTGTTGACACGTGGATCCGCACTGCCGTTGGGCCCCACCTTGAGGATCTTCATCTCGCTCTCTTCTCGTCTGAGGATCAAGGCTTCAAACTCCCTCTCGCCATCCTATCATGCACTAACCTCCTCTCCATGAGGTAACTGTTTTTTCATATTTGAGTCATAACAGGATTTTAGTCTCATTTCCATTTTCAATGTTTATTTGTTACAGAGAAATAGGTACAATGGGATAACAGATGATTAAAATTATTTTATGAAAAAAGTAACAAGATTTATTGATTTTAACAATGAAAGTTGACTCAGTTGGTAAGTAGTTGACTCACCCGCAAGGTCATGAGATCAACTTCCACTATTGATGTGGGAATCTCTTTGTTGGTTGATCTGTATGTACATTAGTTGGCACTCACAGAGGGACATGCCTTGTCGCGCGGTAGCTCCTGGAGCCCAACTCACCTAAACTTTCTAAAAAAACATTTATTGATTGTTTTGTTATCTGAAAATAACTCGAGGAAAACTAGGATCCGATGGAGTAGTAATTGGTGATTTTATGATTATTATGCTAATTAAGCAAAGACATTTTCAATTAACATACCAATTAATGAAAGATATGACAAAACTCGCTAAGGAAAAGACGCTATGTCATGTTTTGTTACATTGTTACATACATTTAACATTATTAGACATTCACTTGCAAAATGGCTTTTTATTCTAAAATTGTACTGGTATTTACAAAAAATTAGTCTTTTTTAGAGCTACAAAGATATTTCAGTCATTTTTTTATTTATTATTTGCACACTTCTTCTTGTTAAATGTGACATGATAAATGATGATAACATAAGATTTGTGTAATGTACACAGTCTCTACGGTGAGATCTTTGTGGAATTGGAACAATCGTCGGCTGTTTGTTTACCATCATTGAAGAGATTACAACTAGACATTGGTAATGTGGATGTGAATGCCATTAATATCCTTCTCTCTGCCTGTCCAATCTTAGAAATTTTGGAACTTTCCTTTTCAACCGAATCTTTGGCCAAGCTTAGGGTTCCATCTTCCTTGAAGAGATTTAAATTTACTGTAGGGAATGACATTGAAGTTTGTCTTGAGATAGACACACCTGGTCTTAAGTACCTTAGCCTCGCCGATATCACACTTGGCGATGCCACTTTTGTTGGGGACTTGCACAGCGTGGAGGAAGCATATCTTGATTTAGAGTGCTCTTCTGAAAGTGATTCTGTTGACCTTTTACCCACTCTCCTGCAAGCTCTCTCTGGAATTAAACGTCTAGTGTTTAGTTGTAATTCAGCAATGGTGAGTGCAATTTTCATTATCCATGTGTATTATATATTCCATTATATATTTAGTAGTTTTGTGCTAATCCTTGTATCTCCACTTGTTGTTGTTGTGTACGTACCAAAAGAGATTATTAGGTAGTCAACCTATTATAGATTTTTCGAAAATGTACTTTTCGGAATTTCGGTGTTTACTACATCTAGAGCTCATTCTTCCTACTTTCGACCCTTTTCTGTACGACGTGCTTCAGAAATGTCCTATGCTTCAAGCTCTCATAATTCAGAATGCGAAGGTTCGTAAATAGAGTTTAACTTAAGTTTTATTGTGGGTGTGTGGTGTTTGTTTGATTATTTGGTGAGTTGTACCTTGTTTTCTGCAGGATACATCACCACATCAATATGGTCTCACGGCAAAGCCGAAAAGTGTTCCTAATTGTCTTGTATCCCACTTGACCTATATTCACTTTAAAGGATATACAGGATGTTCGCGTGAGATGGAATTTGCTAGTTATGTTTTGCATTATGGACTTGTTTTGAAGACAATGCTTATTTCTGGTTTTTTGTCGGATGAAAGCAAGAAGTCGACAAAGTACCATTTTCTCAGACAATTTTCGAATATGCCAAGGGGATCTACTGTCTGCCAAGTTAAATTTGACCAAGTTCTAGGTAATTAACTTGGTACGAAGTACCATTTTCATGCCATTTATTGTGAATTAACTTAGTAATTTTGCATTGTGAGCTTCTTTTTTTAATTAGTAATAATAGTAGTAAATCTGTGTTTGGGGGCCAGTTTTTTGCATTGTGAGCTCACTTTTAAGGTTATTGAAAAACTCTAAAAATAGGCCAGTTTTTTTTTTTTTTTTGGTTGCGTTTAACTCAATTTAACTATGGTAGTATTACCATCTTATGGGAAAGGAATAAATTTCTTATGTTCATGTATCAGTTAAGAATTTTTTAACTTCTGTTTCAATCATATTTTATATTTTCTACTTTCTACAAATGTATTTTATTTAGAAGTTATATTATGATGTGGTTGCCATTGACCAAATCTTACTGATAGAGGGTTCAAATGATAGAAATGAATGAAAATATAGGCTGGTCTTTACTGATGATCTAAAAGAATTATACTAGTTGTTTATCGTAGAGGACCTCCTTCACCAGACTGATACAATTTCTAAGTTATTCCTTACTCTGCCCCTCACCATCCTTATAACATCACTAACACAAGTCAGGACGAGTTTCATCATCTATGGCTCTCTTATTTCTGCTAACTAA

Protein sequence

>MS.gene72960.t1

MEESSKRRKPGEEENDGQGSNSNSNKDRLSSLSDSLLCHILSFLPTKTTVCTMSLVSHRYLHLWKYLQAFDFYDEYSPGVDGEAEHFKDFAIFVNGFLSLRRTRDIRKMRLSCGQSQLDNFAERSVDTWIRTAVGPHLEDLHLALFSSEDQGFKLPLAILSCTNLLSMSLYGEIFVELEQSSAVCLPSLKRLQLDIGNVDVNAINILLSACPILEILELSFSTESLAKLRVPSSLKRFKFTVGNDIEVCLEIDTPGLKYLSLADITLGDATFVGDLHSVEEAYLDLECSSESDSVDLLPTLLQALSGIKRLVFSCNSAMRLLGSQPIIDFSKMYFSEFRCLLHLELILPTFDPFLYDVLQKCPMLQALIIQNAKDTSPHQYGLTAKPKSVPNCLVSHLTYIHFKGYTGCSREMEFASYVLHYGLVLKTMLISGFLSDESKKSTKYHFLRQFSNMPRGSTVCQVKFDQVLEDLLHQTDTISKLFLTLPLTILITSLTQVRTSFIIYGSLISAN