AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014842.t1 MTR_3g107160 98.106 264 5 0 1 264 126 389 0.0 533
MS.gene014842.t1 MTR_3g107120 60.938 256 100 0 8 263 141 396 1.05e-102 305
MS.gene014842.t1 MTR_3g107100 54.478 268 105 3 8 258 131 398 1.16e-82 253
MS.gene014842.t1 MTR_3g106960 67.526 194 59 3 66 255 2 195 5.06e-82 246
MS.gene014842.t1 MTR_1g053025 42.857 273 135 8 1 257 121 388 1.54e-53 178
MS.gene014842.t1 MTR_2g007450 43.015 272 130 7 8 257 151 419 3.81e-52 175
MS.gene014842.t1 MTR_1g107385 44.030 268 130 11 4 257 161 422 5.95e-52 175
MS.gene014842.t1 MTR_2g007400 40.824 267 138 9 8 259 143 404 7.44e-50 169
MS.gene014842.t1 MTR_2g008320 39.615 260 142 6 10 259 174 428 4.96e-47 162
MS.gene014842.t1 MTR_7g083740 42.798 243 122 6 31 262 135 371 1.13e-46 160
MS.gene014842.t1 MTR_7g075820 41.313 259 137 7 8 257 141 393 1.45e-46 160
MS.gene014842.t1 MTR_2g008310 40.154 259 140 7 10 259 120 372 4.26e-46 159
MS.gene014842.t1 MTR_3g099830 40.152 264 137 8 8 257 117 373 1.29e-45 157
MS.gene014842.t1 MTR_4g098590 43.033 244 127 6 8 242 126 366 5.10e-45 155
MS.gene014842.t1 MTR_2g007360 37.993 279 136 11 8 259 107 375 1.61e-42 149
MS.gene014842.t1 MTR_7g007080 39.921 253 143 6 10 257 130 378 6.12e-42 148
MS.gene014842.t1 MTR_5g083890 41.393 244 123 8 8 236 141 379 1.38e-41 149
MS.gene014842.t1 MTR_2g005990 40.909 264 140 9 6 257 135 394 1.74e-41 147
MS.gene014842.t1 MTR_2g007500 41.096 219 111 5 8 211 120 335 2.80e-38 137
MS.gene014842.t1 MTR_7g056280 40.777 206 115 3 59 257 367 572 2.05e-37 139
MS.gene014842.t1 MTR_7g007340 40.239 251 126 10 12 250 111 349 3.02e-37 135
MS.gene014842.t1 MTR_6g029350 43.062 209 98 9 58 257 1 197 3.87e-37 131
MS.gene014842.t1 MTR_3g026920 36.567 268 128 10 8 258 163 405 9.65e-37 134
MS.gene014842.t1 MTR_3g094980 60.000 110 38 2 143 248 27 134 7.53e-35 123
MS.gene014842.t1 MTR_2g007550 40.000 200 99 6 74 258 142 335 2.55e-34 127
MS.gene014842.t1 MTR_1g041245 32.963 270 163 7 2 258 122 386 3.35e-33 124
MS.gene014842.t1 MTR_6g045333 33.208 265 149 8 12 255 186 443 2.38e-31 120
MS.gene014842.t1 MTR_5g008950 33.077 260 159 6 8 258 112 365 4.60e-31 119
MS.gene014842.t1 MTR_7g075800 34.109 258 132 9 8 230 140 394 6.66e-31 121
MS.gene014842.t1 MTR_3g071850 34.221 263 141 9 12 251 149 402 7.24e-31 121
MS.gene014842.t1 MTR_3g108150 34.483 261 153 6 10 256 129 385 1.15e-30 117
MS.gene014842.t1 MTR_7g098570 34.800 250 150 6 8 250 136 379 2.84e-30 118
MS.gene014842.t1 MTR_7g098510 32.576 264 159 7 8 258 134 391 1.09e-29 115
MS.gene014842.t1 MTR_7g032370 31.343 268 153 10 4 258 103 352 3.62e-29 113
MS.gene014842.t1 MTR_6g022500 33.206 262 154 9 10 258 223 476 3.94e-29 115
MS.gene014842.t1 MTR_1g108800 35.361 263 139 8 12 257 93 341 8.28e-29 112
MS.gene014842.t1 MTR_7g098480 32.143 252 152 7 8 250 134 375 9.89e-29 114
MS.gene014842.t1 MTR_5g058100 31.698 265 158 8 11 260 130 386 3.57e-28 111
MS.gene014842.t1 MTR_5g007410 34.177 237 132 7 12 232 148 376 1.10e-27 110
MS.gene014842.t1 MTR_7g034090 41.954 174 91 4 97 263 147 317 1.87e-27 109
MS.gene014842.t1 MTR_2g007090 35.000 260 130 11 4 255 63 291 1.89e-27 107
MS.gene014842.t1 MTR_4g039440 34.749 259 142 11 1 245 143 388 3.47e-27 108
MS.gene014842.t1 MTR_3g036250 31.907 257 150 5 8 255 123 363 3.55e-27 108
MS.gene014842.t1 MTR_7g032380 32.197 264 132 10 7 258 128 356 4.24e-27 107
MS.gene014842.t1 MTR_7g115270 31.985 272 158 7 8 260 135 398 1.00e-26 107
MS.gene014842.t1 MTR_7g034120 30.980 255 158 8 12 258 64 308 1.02e-26 105
MS.gene014842.t1 MTR_1089s0010 34.211 266 144 10 12 260 130 381 1.07e-26 107
MS.gene014842.t1 MTR_5g058000 32.941 255 149 8 12 255 129 372 1.27e-26 107
MS.gene014842.t1 MTR_6g040270 32.308 260 149 10 12 255 130 378 1.34e-26 107
MS.gene014842.t1 MTR_5g073420 32.157 255 151 8 12 263 137 372 2.61e-26 106
MS.gene014842.t1 MTR_7g033990 35.498 231 125 11 31 250 158 375 3.08e-26 106
MS.gene014842.t1 MTR_1g066830 31.321 265 151 9 12 255 130 384 2.18e-25 103
MS.gene014842.t1 MTR_5g008920 31.008 258 163 7 10 258 130 381 3.02e-25 103
MS.gene014842.t1 MTR_7g034115 33.206 262 152 10 7 254 127 379 7.20e-25 102
MS.gene014842.t1 MTR_7g056020 34.082 267 143 9 3 250 114 366 9.57e-25 103
MS.gene014842.t1 MTR_5g045170 30.037 273 159 9 12 263 136 397 2.13e-24 100
MS.gene014842.t1 MTR_7g026500 31.535 241 132 10 34 256 168 393 3.28e-24 100
MS.gene014842.t1 MTR_2g007610 42.143 140 75 3 121 257 14 150 9.15e-24 94.7
MS.gene014842.t1 MTR_2g036470 32.609 276 150 11 5 255 129 393 1.39e-23 99.0
MS.gene014842.t1 MTR_1g108820 33.871 248 124 12 7 234 128 355 4.92e-23 97.1
MS.gene014842.t1 MTR_3g107140 62.338 77 29 0 8 84 121 197 5.22e-23 93.6
MS.gene014842.t1 MTR_0543s0010 33.209 268 143 10 8 256 198 448 1.11e-22 96.7
MS.gene014842.t1 MTR_6g022360 32.759 232 143 7 13 236 154 380 1.37e-22 96.3
MS.gene014842.t1 MTR_7g007370 37.826 230 128 8 8 229 93 315 2.14e-22 94.7
MS.gene014842.t1 MTR_3g109982 30.078 256 155 6 10 253 221 464 2.66e-22 96.3
MS.gene014842.t1 MTR_7g056433 29.104 268 160 9 10 258 133 389 9.58e-22 93.6
MS.gene014842.t1 MTR_5g039470 31.489 235 131 9 12 227 104 327 1.83e-21 92.0
MS.gene014842.t1 MTR_5g045510 30.916 262 139 9 12 255 132 369 2.19e-21 92.4
MS.gene014842.t1 MTR_7g088260 31.518 257 150 10 10 250 209 455 2.43e-21 93.2
MS.gene014842.t1 MTR_3g105060 27.626 257 161 7 10 258 134 373 3.78e-21 91.7
MS.gene014842.t1 MTR_1g085120 32.328 232 140 7 10 231 214 438 9.02e-21 91.3
MS.gene014842.t1 MTR_5g039450 29.583 240 138 7 34 256 131 356 9.11e-21 90.5
MS.gene014842.t1 MTR_0492s0020 33.333 249 136 9 8 243 198 429 9.97e-21 91.3
MS.gene014842.t1 MTR_1g085120 32.328 232 140 7 10 231 289 513 1.67e-20 90.9
MS.gene014842.t1 MTR_6g011460 31.298 262 160 6 12 260 169 423 1.82e-20 90.1
MS.gene014842.t1 MTR_5g012840 30.962 239 114 8 12 244 109 302 8.04e-20 87.4
MS.gene014842.t1 MTR_7g055943 29.084 251 155 6 27 260 179 423 1.44e-19 87.8
MS.gene014842.t1 MTR_5g054920 30.052 193 110 6 55 235 2 181 1.45e-19 84.3
MS.gene014842.t1 MTR_3g082890 28.800 250 152 6 7 233 210 456 1.54e-19 87.8
MS.gene014842.t1 MTR_0009s0080 31.197 234 140 7 12 231 141 367 1.97e-19 87.4
MS.gene014842.t1 MTR_3g040700 31.278 227 126 7 8 224 161 367 2.36e-19 87.0
MS.gene014842.t1 MTR_5g073370 28.996 269 157 10 7 260 133 382 5.22e-19 85.9
MS.gene014842.t1 MTR_6g022520 30.303 231 133 8 49 260 94 315 6.23e-19 84.7
MS.gene014842.t1 MTR_7g033915 31.651 218 117 9 54 255 161 362 7.14e-19 85.1
MS.gene014842.t1 MTR_5g013500 30.738 244 147 8 35 258 124 365 7.28e-19 85.1
MS.gene014842.t1 MTR_3g108560 35.160 219 124 7 35 243 158 368 4.03e-18 83.2
MS.gene014842.t1 MTR_3g450920 52.475 101 37 3 2 100 126 217 1.04e-17 80.1
MS.gene014842.t1 MTR_5g031970 29.911 224 128 6 12 231 125 323 1.11e-17 81.6
MS.gene014842.t1 MTR_5g073340 31.658 199 124 3 9 200 107 300 2.86e-17 80.1
MS.gene014842.t1 MTR_3g087260 31.538 260 159 7 10 256 202 455 3.63e-17 80.9
MS.gene014842.t1 MTR_5g024060 37.500 136 73 4 121 250 71 200 4.19e-17 79.0
MS.gene014842.t1 MTR_3g023630 29.956 227 144 6 10 231 129 345 4.28e-17 80.1
MS.gene014842.t1 MTR_3g071790 29.189 185 111 6 54 225 25 202 9.19e-17 77.0
MS.gene014842.t1 MTR_5g063950 29.278 263 161 9 12 257 107 361 1.57e-16 78.6
MS.gene014842.t1 MTR_4g080610 31.304 230 141 6 35 253 124 347 6.00e-16 77.0
MS.gene014842.t1 MTR_7g081290 34.921 126 68 3 129 244 120 241 6.49e-16 75.5
MS.gene014842.t1 MTR_6g044572 29.317 249 141 6 28 264 169 394 1.38e-15 76.3
MS.gene014842.t1 MTR_7g021990 30.196 255 158 9 10 248 165 415 1.43e-15 76.3
MS.gene014842.t1 MTR_7g021950 30.196 255 158 9 10 248 165 415 2.04e-15 75.9
MS.gene014842.t1 MTR_7g056430 30.224 268 127 10 9 250 124 357 2.32e-15 76.3
MS.gene014842.t1 MTR_7g056420 30.224 268 127 10 9 250 124 357 2.69e-15 75.9
MS.gene014842.t1 MTR_6g044560 29.317 249 141 6 28 264 345 570 2.74e-15 75.5
MS.gene014842.t1 MTR_3g095630 32.237 152 87 6 85 231 11 151 4.15e-15 72.0
MS.gene014842.t1 MTR_2g020180 30.345 145 75 4 126 258 85 215 6.08e-15 72.0
MS.gene014842.t1 MTR_1377s0010 35.433 127 75 3 108 232 7 128 8.17e-15 70.1
MS.gene014842.t1 MTR_7g056277 28.077 260 161 8 8 255 380 625 1.19e-14 73.9
MS.gene014842.t1 MTR_3g467400 28.340 247 131 11 12 245 137 350 1.44e-14 72.8
MS.gene014842.t1 MTR_7g114710 27.376 263 131 9 17 258 141 364 1.63e-14 72.8
MS.gene014842.t1 MTR_2g007530 34.337 166 80 5 102 258 192 337 1.71e-14 72.4
MS.gene014842.t1 MTR_3g115430 35.043 117 70 3 145 258 12 125 2.37e-14 68.6
MS.gene014842.t1 MTR_1g053050 48.718 78 39 1 181 257 37 114 3.64e-14 67.8
MS.gene014842.t1 MTR_7g060470 28.745 247 138 11 10 231 126 359 9.45e-14 70.9
MS.gene014842.t1 MTR_1g043170 39.286 84 42 3 181 258 8 88 1.80e-13 65.1
MS.gene014842.t1 MTR_5g084070 28.520 277 140 8 10 234 127 397 2.76e-13 69.3
MS.gene014842.t1 MTR_7g056287 27.907 258 164 7 8 255 124 369 2.94e-13 69.3
MS.gene014842.t1 MTR_8g085430 37.324 142 70 8 106 234 164 299 3.48e-13 68.6
MS.gene014842.t1 MTR_5g076150 30.332 211 109 8 13 195 26 226 1.05e-12 66.2
MS.gene014842.t1 MTR_7g022105 30.400 250 156 9 10 244 166 412 7.53e-12 65.1
MS.gene014842.t1 MTR_7g023310 32.432 111 72 2 132 242 331 438 2.25e-11 63.9
MS.gene014842.t1 MTR_5g039490 27.027 259 144 8 12 255 145 373 5.51e-11 62.4
MS.gene014842.t1 MTR_7g034110 33.077 130 71 4 109 231 190 310 8.40e-11 62.0
MS.gene014842.t1 MTR_3g108140 40.000 85 45 1 181 259 65 149 8.62e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014842.t1 AT4G26340 27.832 309 167 7 3 258 114 419 9.75e-20 88.2
MS.gene014842.t1 AT3G26920 31.365 271 157 10 7 256 37 299 1.27e-19 86.7
MS.gene014842.t1 AT3G26920 29.276 304 159 13 7 256 37 338 1.95e-16 78.2
MS.gene014842.t1 AT3G26920 29.276 304 159 13 7 256 37 338 1.95e-16 78.2
MS.gene014842.t1 AT5G56452 34.783 115 69 1 150 258 112 226 7.98e-15 72.0
MS.gene014842.t1 AT5G56452 34.783 115 69 1 150 258 113 227 8.52e-15 72.0
MS.gene014842.t1 AT1G32375 25.000 308 178 8 3 258 116 422 8.75e-15 73.9
MS.gene014842.t1 AT1G32375 25.000 308 178 8 3 258 116 422 8.75e-15 73.9
MS.gene014842.t1 AT5G56380 27.358 318 157 11 9 258 128 439 2.72e-14 72.4
MS.gene014842.t1 AT5G56380 27.358 318 157 11 9 258 128 439 2.72e-14 72.4
MS.gene014842.t1 AT5G56440 25.392 319 163 12 6 259 117 425 2.44e-13 69.7
MS.gene014842.t1 AT4G10420 28.477 302 165 9 2 255 21 319 2.64e-13 68.9
MS.gene014842.t1 AT3G54910 28.477 302 169 10 2 258 74 373 3.77e-13 68.9
MS.gene014842.t1 AT3G54910 28.477 302 169 10 2 258 74 373 3.77e-13 68.9
MS.gene014842.t1 AT3G54910 28.477 302 169 10 2 258 74 373 3.77e-13 68.9
MS.gene014842.t1 AT3G50710 27.124 306 167 12 8 258 123 427 9.42e-12 65.1
MS.gene014842.t1 AT5G22610 25.253 297 169 10 9 255 140 433 3.86e-11 63.2

Find 46 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAAAAGCTCACTTTCT+TGG 0.176566 3.3:+87683726 None:intergenic
TAGAAGGAATCGAAGAAAAT+TGG 0.191161 3.3:-87683820 MS.gene014842:CDS
AGACAATGAGGAACAGATAT+TGG 0.286231 3.3:+87683791 None:intergenic
CGATCACAACTTCACATATA+GGG 0.312073 3.3:+87683600 None:intergenic
TTGCAAGTGAGGATGCTAAT+AGG 0.327137 3.3:+87684510 None:intergenic
TAAGCTTTGTAGCTCTTGAT+AGG 0.357478 3.3:+87684290 None:intergenic
TCGATCACAACTTCACATAT+AGG 0.369694 3.3:+87683599 None:intergenic
TTTGTTCATAGAAATAAATA+AGG 0.381043 3.3:-87684187 MS.gene014842:intron
TCAAAATATTGAACTCAGTC+AGG 0.393649 3.3:-87683943 MS.gene014842:intron
TCCTTCTATTATCTCATTGT+GGG 0.399087 3.3:+87683835 None:intergenic
AGAAGGAATCGAAGAAAATT+GGG 0.408150 3.3:-87683819 MS.gene014842:CDS
AGTTAGTTTCTTCAAAATGA+AGG 0.434643 3.3:+87684412 None:intergenic
GACAATGAGGAACAGATATT+GGG 0.437543 3.3:+87683792 None:intergenic
TTCCTTCTATTATCTCATTG+TGG 0.439702 3.3:+87683834 None:intergenic
TGCAAGTGAGGATGCTAATA+GGG 0.443953 3.3:+87684511 None:intergenic
GCACGTAAATTCTCAAGATT+CGG 0.444469 3.3:+87684348 None:intergenic
AAACTCGAACTGGCATTTGT+TGG 0.455332 3.3:-87683994 MS.gene014842:CDS
TTCAAAATGAAGGATCTTGA+GGG 0.457781 3.3:+87684422 None:intergenic
CTTGAGGGAGGGGAGTGTAA+TGG 0.463433 3.3:+87684437 None:intergenic
TTTACTCTATAAACTCGAAC+TGG 0.468317 3.3:-87684004 MS.gene014842:CDS
CTTCAAAATGAAGGATCTTG+AGG 0.470897 3.3:+87684421 None:intergenic
GTTGTCAAATTGTGAAAGGT+AGG 0.479754 3.3:+87684035 None:intergenic
ACCCACAATGAGATAATAGA+AGG 0.480526 3.3:-87683836 MS.gene014842:CDS
GATTTAATATTACTTCTAGC+AGG 0.499995 3.3:-87684375 MS.gene014842:CDS
TTTCTATAAGTTCGTTGTGA+AGG 0.501551 3.3:-87684469 MS.gene014842:CDS
AATGAAGGATCTTGAGGGAG+GGG 0.517549 3.3:+87684427 None:intergenic
GAGAGTTATTATTATGCGCA+AGG 0.530407 3.3:-87683628 MS.gene014842:CDS
ACATTATGAAGTGCTTTCAG+TGG 0.554780 3.3:+87684216 None:intergenic
GAACAAGGGTCTTGCAAGTG+AGG 0.558852 3.3:+87684499 None:intergenic
GTTGTGATCGATTGCAAGCG+AGG 0.567231 3.3:-87683587 MS.gene014842:CDS
GAAGTGCTTTCAGTGGAAAG+TGG 0.575993 3.3:+87684223 None:intergenic
AAATGAAGGATCTTGAGGGA+GGG 0.584441 3.3:+87684426 None:intergenic
TTATTTGTTTAGGTGTATCG+AGG 0.588335 3.3:-87684071 MS.gene014842:intron
ATGCTAATAGGGAATTTGAA+AGG 0.596817 3.3:+87684522 None:intergenic
GATCACAACTTCACATATAG+GGG 0.597898 3.3:+87683601 None:intergenic
AGAGTTATTATTATGCGCAA+GGG 0.608669 3.3:-87683627 MS.gene014842:CDS
AGTTTATAGAGTAAAGTGCA+AGG 0.613124 3.3:+87684012 None:intergenic
GTTTATAGAGTAAAGTGCAA+GGG 0.614792 3.3:+87684013 None:intergenic
AAAATGAAGGATCTTGAGGG+AGG 0.631237 3.3:+87684425 None:intergenic
TATAGAAATCTAGATGAACA+AGG 0.632393 3.3:+87684484 None:intergenic
AAGGGTTGTCAAATTGTGAA+AGG 0.643954 3.3:+87684031 None:intergenic
CAAACCATGAAAATCAATTG+CGG 0.646623 3.3:-87683671 MS.gene014842:CDS
AGGAATCGAAGAAAATTGGG+AGG 0.653281 3.3:-87683816 MS.gene014842:CDS
ATAGAAATCTAGATGAACAA+GGG 0.662564 3.3:+87684485 None:intergenic
CACAACTTCACATATAGGGG+AGG 0.667240 3.3:+87683604 None:intergenic
AGGTAAGAGAGTCTTCAGAG+TGG 0.706824 3.3:+87684310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTCATAGAAATAAATA+AGG - chr3.3:87683927-87683946 MS.gene014842:intron 15.0%
! AAGATATACCGTGAAAAATA+AGG + chr3.3:87684013-87684032 None:intergenic 25.0%
! ACCTAAACAAATAAACAACA+GGG + chr3.3:87684037-87684056 None:intergenic 25.0%
! ATAGAAATCTAGATGAACAA+GGG + chr3.3:87683632-87683651 None:intergenic 25.0%
! GATTTAATATTACTTCTAGC+AGG - chr3.3:87683739-87683758 MS.gene014842:CDS 25.0%
! TATAGAAATCTAGATGAACA+AGG + chr3.3:87683633-87683652 None:intergenic 25.0%
!! AGTTAGTTTCTTCAAAATGA+AGG + chr3.3:87683705-87683724 None:intergenic 25.0%
!!! AATTTTGGCCTTATTTTTCA+CGG - chr3.3:87684002-87684021 MS.gene014842:CDS 25.0%
!!! AGTTCAATATTTTGAAGGTT+AGG + chr3.3:87684166-87684185 None:intergenic 25.0%
!!! AGTTTTAATGAAAGACAATG+AGG + chr3.3:87684338-87684357 None:intergenic 25.0%
!!! ATAAATCAAAAAGGCATTCT+AGG + chr3.3:87684234-87684253 None:intergenic 25.0%
!!! GTTCAATATTTTGAAGGTTA+GGG + chr3.3:87684165-87684184 None:intergenic 25.0%
!!! TGCTCAATTTTGAAATTCTT+GGG - chr3.3:87684365-87684384 MS.gene014842:CDS 25.0%
!!! TTGATTTGCAGTTTTGTTTT+GGG - chr3.3:87683979-87683998 MS.gene014842:CDS 25.0%
!!! TTGCTCAATTTTGAAATTCT+TGG - chr3.3:87684364-87684383 MS.gene014842:CDS 25.0%
AGAAGGAATCGAAGAAAATT+GGG - chr3.3:87684295-87684314 MS.gene014842:CDS 30.0%
AGAGTTATTATTATGCGCAA+GGG - chr3.3:87684487-87684506 MS.gene014842:CDS 30.0%
AGTTTATAGAGTAAAGTGCA+AGG + chr3.3:87684105-87684124 None:intergenic 30.0%
ATGCTAATAGGGAATTTGAA+AGG + chr3.3:87683595-87683614 None:intergenic 30.0%
CAAACCATGAAAATCAATTG+CGG - chr3.3:87684443-87684462 MS.gene014842:CDS 30.0%
CACCTAAACAAATAAACAAC+AGG + chr3.3:87684038-87684057 None:intergenic 30.0%
GTTTATAGAGTAAAGTGCAA+GGG + chr3.3:87684104-87684123 None:intergenic 30.0%
TAGAAGGAATCGAAGAAAAT+TGG - chr3.3:87684294-87684313 MS.gene014842:CDS 30.0%
TCAAAATATTGAACTCAGTC+AGG - chr3.3:87684171-87684190 MS.gene014842:intron 30.0%
TCCTTCTATTATCTCATTGT+GGG + chr3.3:87684282-87684301 None:intergenic 30.0%
TTATTTGTTTAGGTGTATCG+AGG - chr3.3:87684043-87684062 MS.gene014842:CDS 30.0%
TTCAAAATGAAGGATCTTGA+GGG + chr3.3:87683695-87683714 None:intergenic 30.0%
TTCCTTCTATTATCTCATTG+TGG + chr3.3:87684283-87684302 None:intergenic 30.0%
TTTACTCTATAAACTCGAAC+TGG - chr3.3:87684110-87684129 MS.gene014842:intron 30.0%
TTTCTATAAGTTCGTTGTGA+AGG - chr3.3:87683645-87683664 MS.gene014842:CDS 30.0%
! TCCCTGTTGTTTATTTGTTT+AGG - chr3.3:87684033-87684052 MS.gene014842:CDS 30.0%
!! GACTGAGTTCAATATTTTGA+AGG + chr3.3:87684171-87684190 None:intergenic 30.0%
!! TTTACCGCAATTGATTTTCA+TGG + chr3.3:87684450-87684469 None:intergenic 30.0%
!!! CAGTTTTGTTTTGGGAATTT+TGG - chr3.3:87683987-87684006 MS.gene014842:CDS 30.0%
!!! CTTGATTTGCAGTTTTGTTT+TGG - chr3.3:87683978-87683997 MS.gene014842:CDS 30.0%
AAGGGTTGTCAAATTGTGAA+AGG + chr3.3:87684086-87684105 None:intergenic 35.0%
ACCCACAATGAGATAATAGA+AGG - chr3.3:87684278-87684297 MS.gene014842:CDS 35.0%
AGACAATGAGGAACAGATAT+TGG + chr3.3:87684326-87684345 None:intergenic 35.0%
AGTTGACGAAAGCAAAAATG+TGG - chr3.3:87683857-87683876 MS.gene014842:intron 35.0%
CCAATAAAAGCTCACTTTCT+TGG + chr3.3:87684391-87684410 None:intergenic 35.0%
CGATCACAACTTCACATATA+GGG + chr3.3:87684517-87684536 None:intergenic 35.0%
CTTCAAAATGAAGGATCTTG+AGG + chr3.3:87683696-87683715 None:intergenic 35.0%
GACAATGAGGAACAGATATT+GGG + chr3.3:87684325-87684344 None:intergenic 35.0%
GAGAGTTATTATTATGCGCA+AGG - chr3.3:87684486-87684505 MS.gene014842:CDS 35.0%
GATCACAACTTCACATATAG+GGG + chr3.3:87684516-87684535 None:intergenic 35.0%
GCACGTAAATTCTCAAGATT+CGG + chr3.3:87683769-87683788 None:intergenic 35.0%
GTTGACGAAAGCAAAAATGT+GGG - chr3.3:87683858-87683877 MS.gene014842:intron 35.0%
GTTGTCAAATTGTGAAAGGT+AGG + chr3.3:87684082-87684101 None:intergenic 35.0%
TCGATCACAACTTCACATAT+AGG + chr3.3:87684518-87684537 None:intergenic 35.0%
TTGACGAAAGCAAAAATGTG+GGG - chr3.3:87683859-87683878 MS.gene014842:intron 35.0%
! ACATTATGAAGTGCTTTCAG+TGG + chr3.3:87683901-87683920 None:intergenic 35.0%
! AGTCAGGTTTGTTTGGTATA+GGG - chr3.3:87684187-87684206 MS.gene014842:intron 35.0%
! CCAAGAAAGTGAGCTTTTAT+TGG - chr3.3:87684388-87684407 MS.gene014842:CDS 35.0%
! TAAGCTTTGTAGCTCTTGAT+AGG + chr3.3:87683827-87683846 None:intergenic 35.0%
AAAATGAAGGATCTTGAGGG+AGG + chr3.3:87683692-87683711 None:intergenic 40.0%
AAACTCGAACTGGCATTTGT+TGG - chr3.3:87684120-87684139 MS.gene014842:intron 40.0%
AAATGAAGGATCTTGAGGGA+GGG + chr3.3:87683691-87683710 None:intergenic 40.0%
AGGAATCGAAGAAAATTGGG+AGG - chr3.3:87684298-87684317 MS.gene014842:CDS 40.0%
TGCAAGTGAGGATGCTAATA+GGG + chr3.3:87683606-87683625 None:intergenic 40.0%
TTGCAAGTGAGGATGCTAAT+AGG + chr3.3:87683607-87683626 None:intergenic 40.0%
! CAGTCAGGTTTGTTTGGTAT+AGG - chr3.3:87684186-87684205 MS.gene014842:intron 40.0%
! TGAACTCAGTCAGGTTTGTT+TGG - chr3.3:87684180-87684199 MS.gene014842:intron 40.0%
AATGAAGGATCTTGAGGGAG+GGG + chr3.3:87683690-87683709 None:intergenic 45.0%
AGGTAAGAGAGTCTTCAGAG+TGG + chr3.3:87683807-87683826 None:intergenic 45.0%
CACAACTTCACATATAGGGG+AGG + chr3.3:87684513-87684532 None:intergenic 45.0%
! GAAGTGCTTTCAGTGGAAAG+TGG + chr3.3:87683894-87683913 None:intergenic 45.0%
!! AAAAATTAAATAAATCAAAA+AGG + chr3.3:87684243-87684262 None:intergenic 5.0%
!!! TTAATTTTTCTATATTATTA+GGG - chr3.3:87684254-87684273 MS.gene014842:CDS 5.0%
!!! TTTAATTTTTCTATATTATT+AGG - chr3.3:87684253-87684272 MS.gene014842:CDS 5.0%
GAACAAGGGTCTTGCAAGTG+AGG + chr3.3:87683618-87683637 None:intergenic 50.0%
GTTGTGATCGATTGCAAGCG+AGG - chr3.3:87684527-87684546 MS.gene014842:CDS 50.0%
! CTTGAGGGAGGGGAGTGTAA+TGG + chr3.3:87683680-87683699 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 87683577 87684559 87683577 ID=MS.gene014842
chr3.3 mRNA 87683577 87684559 87683577 ID=MS.gene014842.t1;Parent=MS.gene014842
chr3.3 exon 87684188 87684559 87684188 ID=MS.gene014842.t1.exon1;Parent=MS.gene014842.t1
chr3.3 CDS 87684188 87684559 87684188 ID=cds.MS.gene014842.t1;Parent=MS.gene014842.t1
chr3.3 exon 87683944 87684081 87683944 ID=MS.gene014842.t1.exon2;Parent=MS.gene014842.t1
chr3.3 CDS 87683944 87684081 87683944 ID=cds.MS.gene014842.t1;Parent=MS.gene014842.t1
chr3.3 exon 87683577 87683861 87683577 ID=MS.gene014842.t1.exon3;Parent=MS.gene014842.t1
chr3.3 CDS 87683577 87683861 87683577 ID=cds.MS.gene014842.t1;Parent=MS.gene014842.t1
Gene Sequence

>MS.gene014842

ATGCACGATGATCATCCTTTCAAATTCCCTATTAGCATCCTCACTTGCAAGACCCTTGTTCATCTAGATTTCTATAAGTTCGTTGTGAAGGATTTTTCTTCCATTACACTCCCCTCCCTCAAGATCCTTCATTTTGAAGAAACTAACTTCTTAAATTATCAAGATTTAATATTACTTCTAGCAGGATGTCCGAATCTTGAGAATTTACGTGCAACTTTTCTAGAGTTCCACTCTGAAGACTCTCTTACCTATCAAGAGCTACAAAGCTTAAGCTTAAACAAGTTGACGAAAGCAAAAATGTGGGGCACTTATTGCCACTTTCCACTGAAAGCACTTCATAATGTGAAGCTTTTGTTCATAGAAATAAATAAGGTTTGAATTTTATTATGAACATGATGCTACTTGATTTGCAGTTTTGTTTTGGGAATTTTGGCCTTATTTTTCACGGTATATCTTTCCCTGTTGTTTATTTGTTTAGGTGTATCGAGGTTGTGATGAGATTCCTACCTTTCACAATTTGACAACCCTTGCACTTTACTCTATAAACTCGAACTGGCATTTGTTGGCGCAAGTGCTCAATCACTGCCCTAACCTTCAAAATATTGAACTCAGTCAGGTTTGTTTGGTATAGGGATCATATCTGATTTATCATTTCCTAGAATGCCTTTTTGATTTATTTAATTTTTCTATATTATTAGGGAACCCACAATGAGATAATAGAAGGAATCGAAGAAAATTGGGAGGACCCAATATCTGTTCCTCATTGTCTTTCATTAAAACTTCAAACTTGCTCAATTTTGAAATTCTTGGGCCAAGAAAGTGAGCTTTTATTGGCAAAATATATTCTAAAGAATGCAAGAGTTTTGCAAACCATGAAAATCAATTGCGGTAAAGAGCTCAAAACACATAGAGAGTTATTATTATGCGCAAGGGCCTCCCCTATATGTGAAGTTGTGATCGATTGCAAGCGAGGTTCTATGTAA
Protein sequence

>MS.gene014842.t1

MHDDHPFKFPISILTCKTLVHLDFYKFVVKDFSSITLPSLKILHFEETNFLNYQDLILLLAGCPNLENLRATFLEFHSEDSLTYQELQSLSLNKLTKAKMWGTYCHFPLKALHNVKLLFIEINKVYRGCDEIPTFHNLTTLALYSINSNWHLLAQVLNHCPNLQNIELSQGTHNEIIEGIEENWEDPISVPHCLSLKLQTCSILKFLGQESELLLAKYILKNARVLQTMKINCGKELKTHRELLLCARASPICEVVIDCKRGSM