AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038427


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038427.t1 MTR_5g092960 84.979 486 42 2 1 479 1 462 0.0 777
MS.gene038427.t1 MTR_5g092960 84.343 396 31 2 1 389 1 372 0.0 611
MS.gene038427.t1 MTR_8g062270 60.554 469 151 6 16 478 13 453 0.0 535
MS.gene038427.t1 MTR_8g468840 62.284 464 145 8 19 479 14 450 0.0 515
MS.gene038427.t1 MTR_8g468760 56.962 474 136 11 14 478 4 418 1.34e-162 466
MS.gene038427.t1 MTR_8g467800 54.393 478 176 9 9 478 9 452 5.45e-160 461
MS.gene038427.t1 MTR_4g032730 50.199 502 188 9 5 479 1 467 1.62e-151 440
MS.gene038427.t1 MTR_2g083840 50.743 471 190 9 17 478 19 456 1.38e-134 396
MS.gene038427.t1 MTR_8g468810 46.951 492 205 14 4 478 10 462 1.51e-130 386
MS.gene038427.t1 MTR_8g058970 48.394 498 189 14 14 478 14 476 2.59e-130 386
MS.gene038427.t1 MTR_8g468810 46.985 398 166 11 4 390 10 373 3.52e-103 313
MS.gene038427.t1 MTR_8g014260 43.210 486 223 17 9 478 2 450 1.27e-99 306
MS.gene038427.t1 MTR_8g467800 51.642 335 123 8 9 338 9 309 3.45e-94 289
MS.gene038427.t1 MTR_8g468810 48.338 331 134 8 4 330 10 307 1.05e-90 280
MS.gene038427.t1 MTR_8g468810 48.338 331 134 8 4 330 10 307 1.68e-90 279
MS.gene038427.t1 MTR_8g469020 39.875 479 234 11 19 478 7 450 1.84e-90 283
MS.gene038427.t1 MTR_8g468810 48.338 331 134 8 4 330 10 307 2.76e-90 279
MS.gene038427.t1 MTR_8g445780 42.725 433 195 14 8 433 2 388 1.25e-86 271
MS.gene038427.t1 MTR_8g058965 40.365 493 237 14 5 478 1 455 5.30e-85 269
MS.gene038427.t1 MTR_8g070950 38.557 485 235 15 5 478 1 433 1.01e-79 255
MS.gene038427.t1 MTR_8g062310 35.941 473 236 12 11 478 17 427 6.78e-72 234
MS.gene038427.t1 MTR_4g050250 38.584 438 217 11 10 426 12 418 6.35e-71 231
MS.gene038427.t1 MTR_8g062010 36.306 471 239 13 19 478 9 429 6.72e-71 232
MS.gene038427.t1 MTR_8g062080 35.908 479 231 15 19 478 23 444 1.63e-69 228
MS.gene038427.t1 MTR_8g062300 33.267 499 272 13 6 478 13 476 3.79e-61 207
MS.gene038427.t1 MTR_8g014210 50.218 229 104 5 253 478 9 230 4.21e-58 192
MS.gene038427.t1 MTR_4g024710 43.243 296 148 11 191 478 63 346 2.35e-56 191
MS.gene038427.t1 MTR_8g014160 40.000 345 161 14 2 338 32 338 4.36e-46 166
MS.gene038427.t1 MTR_8g014160 44.595 74 39 1 407 478 351 424 1.23e-11 67.0
MS.gene038427.t1 MTR_4g024745 42.294 279 141 11 189 460 15 280 5.63e-46 162
MS.gene038427.t1 MTR_8g467790 32.692 416 200 15 18 424 147 491 8.85e-43 159
MS.gene038427.t1 MTR_8g077460 37.548 261 123 10 9 262 2 229 4.18e-34 132
MS.gene038427.t1 MTR_8g077460 37.963 216 117 8 270 478 169 374 8.82e-28 114
MS.gene038427.t1 MTR_5g021550 47.097 155 73 6 12 161 12 162 2.26e-33 124
MS.gene038427.t1 MTR_5g084070 29.614 466 264 18 15 471 9 419 1.52e-30 123
MS.gene038427.t1 MTR_5g080710 29.424 469 268 20 15 471 29 446 2.03e-30 123
MS.gene038427.t1 MTR_8g014290 44.079 152 74 6 19 161 10 159 4.71e-29 112
MS.gene038427.t1 MTR_2g007450 26.349 482 265 14 12 476 9 417 2.36e-28 117
MS.gene038427.t1 MTR_6g022500 26.216 473 244 15 14 476 96 473 2.89e-27 114
MS.gene038427.t1 MTR_1089s0010 26.722 479 236 15 14 479 3 379 6.15e-27 112
MS.gene038427.t1 MTR_4g024720 39.791 191 87 8 6 172 4 190 1.34e-26 107
MS.gene038427.t1 MTR_3g107100 26.915 483 246 15 11 476 3 395 1.83e-26 111
MS.gene038427.t1 MTR_7g026500 25.470 479 240 18 19 478 14 394 3.21e-24 104
MS.gene038427.t1 MTR_1g041245 25.373 469 249 17 18 478 10 385 1.41e-23 102
MS.gene038427.t1 MTR_2g008320 25.251 499 240 21 2 476 35 424 1.70e-23 103
MS.gene038427.t1 MTR_7g098510 25.052 479 236 19 18 478 17 390 1.87e-22 99.4
MS.gene038427.t1 MTR_2g008310 24.790 476 233 18 18 476 1 368 2.06e-22 99.4
MS.gene038427.t1 MTR_4g039440 25.101 494 250 18 4 478 19 411 2.12e-22 99.8
MS.gene038427.t1 MTR_3g108560 25.424 472 243 18 16 478 17 388 2.54e-22 99.0
MS.gene038427.t1 MTR_0543s0010 26.170 470 231 16 19 478 86 449 9.06e-22 98.2
MS.gene038427.t1 MTR_3g107120 25.105 474 249 16 17 476 7 388 1.03e-21 97.4
MS.gene038427.t1 MTR_3g107160 25.413 484 238 17 11 476 2 380 1.19e-21 97.1
MS.gene038427.t1 MTR_2g036470 24.948 481 265 17 7 478 2 395 1.85e-21 96.7
MS.gene038427.t1 MTR_3g071850 25.974 462 251 18 18 471 23 401 1.88e-21 98.2
MS.gene038427.t1 MTR_3g108150 26.261 476 233 16 19 478 13 386 2.10e-21 96.3
MS.gene038427.t1 MTR_7g032380 25.322 466 223 17 18 478 10 355 2.86e-21 95.5
MS.gene038427.t1 MTR_2g086020 39.597 149 83 3 333 478 170 314 2.93e-21 94.7
MS.gene038427.t1 MTR_2g086020 40.164 122 56 4 47 162 3 113 2.47e-13 71.2
MS.gene038427.t1 MTR_4g056040 26.869 495 260 20 15 457 5 449 3.40e-21 96.7
MS.gene038427.t1 MTR_6g040270 26.598 485 225 20 14 476 3 378 3.53e-21 95.5
MS.gene038427.t1 MTR_5g039950 27.009 448 240 18 16 453 20 390 3.92e-21 95.9
MS.gene038427.t1 MTR_1g108820 27.044 477 230 22 18 476 7 383 5.93e-21 94.7
MS.gene038427.t1 MTR_2g007400 25.662 491 232 20 18 476 11 400 1.39e-20 94.0
MS.gene038427.t1 MTR_1g085120 25.745 470 248 16 19 478 92 470 1.61e-20 94.4
MS.gene038427.t1 MTR_4g098590 26.941 438 225 15 23 450 3 355 1.98e-20 93.2
MS.gene038427.t1 MTR_6g011460 24.899 494 244 19 6 478 33 420 2.47e-20 93.6
MS.gene038427.t1 MTR_1g085120 26.004 473 243 18 19 478 167 545 2.62e-20 94.4
MS.gene038427.t1 MTR_6g045333 23.679 473 262 17 18 478 60 445 6.99e-20 92.4
MS.gene038427.t1 MTR_8g014220 31.602 231 82 8 2 231 5 160 7.15e-20 87.0
MS.gene038427.t1 MTR_4g056070 26.891 476 248 21 15 434 5 436 2.11e-19 90.9
MS.gene038427.t1 MTR_1g066830 26.360 478 237 21 18 478 7 386 2.60e-19 90.1
MS.gene038427.t1 MTR_5g007410 24.947 469 248 19 21 476 28 405 3.38e-19 90.1
MS.gene038427.t1 MTR_3g087260 26.036 507 266 15 19 478 12 456 6.14e-19 89.7
MS.gene038427.t1 MTR_5g058000 26.371 474 230 17 18 478 7 374 6.95e-19 88.6
MS.gene038427.t1 MTR_0009s0080 25.764 458 241 14 21 469 20 387 7.96e-19 89.0
MS.gene038427.t1 MTR_4g056020 27.232 448 256 19 15 441 5 403 1.15e-18 88.6
MS.gene038427.t1 MTR_5g008920 24.066 482 249 19 10 478 3 380 3.62e-18 86.7
MS.gene038427.t1 MTR_4g056030 27.273 462 260 19 12 449 2 411 5.50e-18 86.7
MS.gene038427.t1 MTR_1g038710 26.813 455 267 16 17 449 17 427 2.72e-17 84.3
MS.gene038427.t1 MTR_4g055990 23.887 494 288 17 15 457 5 461 6.41e-17 83.6
MS.gene038427.t1 MTR_4g055990 24.089 494 287 16 15 457 5 461 6.62e-17 83.6
MS.gene038427.t1 MTR_1g107385 25.780 481 242 18 19 476 32 420 7.18e-17 83.2
MS.gene038427.t1 MTR_5g073370 24.661 442 229 16 16 449 2 347 8.12e-17 82.4
MS.gene038427.t1 MTR_3g048290 26.210 496 284 17 15 478 19 464 8.29e-17 83.2
MS.gene038427.t1 MTR_5g058100 28.986 276 150 12 231 478 126 383 2.39e-16 81.3
MS.gene038427.t1 MTR_8g085430 27.915 283 148 10 18 294 10 242 6.84e-16 79.0
MS.gene038427.t1 MTR_4g113810 35.567 194 93 9 104 292 2 168 7.86e-16 75.5
MS.gene038427.t1 MTR_3g109982 25.826 484 256 17 19 451 13 444 8.41e-16 80.9
MS.gene038427.t1 MTR_7g115270 25.370 473 253 21 19 476 12 399 4.84e-15 77.4
MS.gene038427.t1 MTR_7g034115 26.637 443 217 17 18 451 10 353 5.19e-15 77.0
MS.gene038427.t1 MTR_7g056433 31.489 235 121 10 9 240 2 199 2.73e-14 74.7
MS.gene038427.t1 MTR_7g033990 31.304 230 107 10 18 238 10 197 2.87e-14 75.1
MS.gene038427.t1 MTR_2g072720 25.828 453 269 18 14 447 36 440 4.03e-14 74.7
MS.gene038427.t1 MTR_1g108820 29.658 263 124 11 18 262 7 226 4.34e-14 73.9
MS.gene038427.t1 MTR_4g080787 26.263 297 187 10 201 478 180 463 2.38e-13 72.4
MS.gene038427.t1 MTR_2g007500 29.778 225 105 6 18 238 13 188 2.49e-13 71.2
MS.gene038427.t1 MTR_2g005990 28.571 231 123 7 18 238 5 203 2.59e-13 72.0
MS.gene038427.t1 MTR_7g039630 32.487 197 118 5 201 382 140 336 5.32e-13 70.5
MS.gene038427.t1 MTR_1g108800 24.681 470 206 17 18 476 7 339 7.29e-13 70.1
MS.gene038427.t1 MTR_7g056447 29.817 218 109 9 19 233 9 185 9.44e-13 69.3
MS.gene038427.t1 MTR_3g040700 22.897 428 221 14 19 441 43 366 1.30e-12 70.1
MS.gene038427.t1 MTR_4g024770 47.059 68 33 2 3 68 6 72 2.61e-12 62.8
MS.gene038427.t1 MTR_4g055580 26.884 491 255 24 15 449 96 538 4.23e-12 68.9
MS.gene038427.t1 MTR_6g044560 30.472 233 128 9 18 237 177 388 7.84e-12 67.8
MS.gene038427.t1 MTR_8g014230 44.444 81 42 2 389 467 14 93 1.00e-11 62.0
MS.gene038427.t1 MTR_4g045900 22.594 478 302 17 18 449 25 480 1.14e-11 67.4
MS.gene038427.t1 MTR_6g044572 30.472 233 128 9 18 237 1 212 1.76e-11 66.2
MS.gene038427.t1 MTR_5g087940 27.397 292 169 11 14 305 21 269 1.77e-11 66.2
MS.gene038427.t1 MTR_4g080590 26.621 293 193 11 201 479 168 452 1.99e-11 66.2
MS.gene038427.t1 MTR_2g082880 23.769 467 277 15 11 457 2 409 2.51e-11 65.9
MS.gene038427.t1 MTR_7g034120 34.351 131 76 6 351 478 184 307 2.60e-11 65.1
MS.gene038427.t1 MTR_7g083740 32.394 142 81 3 344 478 233 366 2.62e-11 65.5
MS.gene038427.t1 MTR_7g056280 32.278 158 92 4 330 476 417 570 5.38e-11 65.5
MS.gene038427.t1 MTR_5g008950 26.255 259 160 10 239 478 118 364 5.44e-11 64.7
MS.gene038427.t1 MTR_2g007090 26.582 237 127 8 266 479 82 294 6.74e-11 63.5
MS.gene038427.t1 MTR_1377s0010 34.862 109 63 3 343 449 25 127 9.17e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038427.t1 AT1G16930 28.279 488 264 21 19 476 15 446 1.60e-31 126
MS.gene038427.t1 AT1G16930 28.279 488 264 21 19 476 15 446 1.60e-31 126
MS.gene038427.t1 AT1G16930 28.279 488 264 21 19 476 15 446 1.60e-31 126
MS.gene038427.t1 AT5G53840 26.392 485 293 19 8 479 7 440 1.33e-30 124
MS.gene038427.t1 AT4G26340 28.092 477 268 20 18 478 1 418 1.83e-30 122
MS.gene038427.t1 AT5G53635 26.316 475 282 14 21 478 2 425 3.81e-30 122
MS.gene038427.t1 AT5G56420 25.630 476 278 17 19 478 6 421 6.23e-29 118
MS.gene038427.t1 AT5G56420 25.630 476 278 17 19 478 6 421 6.23e-29 118
MS.gene038427.t1 AT5G56420 25.630 476 278 17 19 478 6 421 6.23e-29 118
MS.gene038427.t1 AT5G56440 27.801 482 263 19 18 474 1 422 8.54e-29 118
MS.gene038427.t1 AT4G00160 29.289 478 268 23 19 478 16 441 2.37e-28 117
MS.gene038427.t1 AT5G60610 28.090 445 248 17 18 449 1 386 7.72e-28 115
MS.gene038427.t1 AT5G60610 28.090 445 248 17 18 449 1 386 7.72e-28 115
MS.gene038427.t1 AT4G13965 30.573 471 258 20 17 476 8 420 3.78e-27 113
MS.gene038427.t1 AT1G51370 26.596 470 277 17 19 476 19 432 6.36e-27 113
MS.gene038427.t1 AT4G00315 26.042 480 298 16 18 479 1 441 6.72e-27 113
MS.gene038427.t1 AT1G13780 26.122 490 283 16 19 476 10 452 7.84e-27 113
MS.gene038427.t1 AT5G44950 27.551 490 265 22 19 476 4 435 7.88e-27 112
MS.gene038427.t1 AT1G66310 26.069 491 296 16 1 476 1 439 8.07e-27 112
MS.gene038427.t1 AT2G04230 27.813 471 272 17 13 469 7 423 9.72e-27 112
MS.gene038427.t1 AT1G78750 27.160 486 282 17 17 476 16 455 1.71e-26 112
MS.gene038427.t1 AT1G78750 27.160 486 282 17 17 476 16 455 1.71e-26 112
MS.gene038427.t1 AT5G22730 26.916 509 284 23 1 476 10 463 7.33e-26 110
MS.gene038427.t1 AT5G22730 26.916 509 284 23 1 476 10 463 7.33e-26 110
MS.gene038427.t1 AT2G26030 26.939 490 271 22 19 476 4 438 1.35e-25 109
MS.gene038427.t1 AT2G26030 26.939 490 271 22 19 476 4 438 1.35e-25 109
MS.gene038427.t1 AT5G22700 25.591 465 266 15 19 457 6 416 2.16e-25 108
MS.gene038427.t1 AT5G22700 25.591 465 266 15 19 457 6 416 2.16e-25 108
MS.gene038427.t1 AT5G22700 25.591 465 266 15 19 457 6 416 2.16e-25 108
MS.gene038427.t1 AT5G22700 25.591 465 266 15 19 457 6 416 2.16e-25 108
MS.gene038427.t1 AT2G26030 26.176 489 281 20 19 476 4 443 2.52e-25 108
MS.gene038427.t1 AT5G56560 26.471 476 269 16 20 478 6 417 2.66e-25 108
MS.gene038427.t1 AT5G22610 25.657 495 284 18 19 477 18 464 3.49e-25 108
MS.gene038427.t1 AT5G22700 25.591 465 266 15 19 457 43 453 4.10e-25 108
MS.gene038427.t1 AT1G55660 25.417 480 301 15 18 479 52 492 5.15e-25 108
MS.gene038427.t1 AT1G69630 26.069 491 276 19 16 476 15 448 7.95e-25 107
MS.gene038427.t1 AT5G22660 25.203 492 273 17 19 476 13 443 9.43e-25 107
MS.gene038427.t1 AT5G22670 24.845 483 284 13 19 476 11 439 1.00e-24 106
MS.gene038427.t1 AT5G56820 28.903 474 256 20 19 476 15 423 1.17e-24 106
MS.gene038427.t1 AT3G49030 28.631 482 262 23 19 479 21 441 1.18e-24 106
MS.gene038427.t1 AT5G44980 27.479 484 277 21 17 478 2 433 2.21e-24 105
MS.gene038427.t1 AT5G44980 27.479 484 277 21 17 478 2 433 2.21e-24 105
MS.gene038427.t1 AT5G22610 25.519 482 271 18 19 477 18 434 5.44e-24 105
MS.gene038427.t1 AT1G66300 26.240 484 276 21 17 476 27 453 7.74e-24 104
MS.gene038427.t1 AT5G38570 26.170 470 243 17 18 478 1 375 8.21e-24 103
MS.gene038427.t1 AT5G27750 25.813 492 289 17 19 476 5 454 1.63e-23 103
MS.gene038427.t1 AT5G56380 26.061 495 277 22 18 479 1 439 4.40e-23 102
MS.gene038427.t1 AT5G56380 26.061 495 277 22 18 479 1 439 4.40e-23 102
MS.gene038427.t1 AT5G56400 27.044 477 280 15 17 478 31 454 4.96e-23 102
MS.gene038427.t1 AT1G32375 25.159 473 290 15 18 478 1 421 1.43e-22 100
MS.gene038427.t1 AT1G32375 25.159 473 290 15 18 478 1 421 1.43e-22 100
MS.gene038427.t1 AT2G26860 25.828 453 266 18 18 453 1 400 2.37e-22 99.4
MS.gene038427.t1 AT2G26860 25.828 453 266 18 18 453 1 400 2.37e-22 99.4
MS.gene038427.t1 AT5G44960 24.528 477 283 17 16 478 2 415 2.58e-22 99.4
MS.gene038427.t1 AT1G22000 25.767 489 262 18 20 476 30 449 2.73e-22 99.8
MS.gene038427.t1 AT3G52680 28.512 484 264 20 19 479 21 445 2.89e-22 99.8
MS.gene038427.t1 AT1G78760 23.944 497 300 19 1 476 1 440 2.94e-22 99.8
MS.gene038427.t1 AT1G80470 25.203 492 290 21 5 476 1 434 4.47e-22 99.0
MS.gene038427.t1 AT5G22720 25.956 497 276 21 19 478 23 464 7.20e-22 98.6
MS.gene038427.t1 AT1G51370 25.214 468 264 16 19 476 19 410 2.15e-21 96.7
MS.gene038427.t1 AT3G58980 27.530 494 274 21 18 479 1 442 5.91e-21 96.3
MS.gene038427.t1 AT3G44810 30.636 346 200 10 21 357 9 323 1.22e-20 94.7
MS.gene038427.t1 AT3G59200 28.753 393 215 14 19 383 7 362 1.23e-20 93.6
MS.gene038427.t1 AT3G58900 25.751 466 269 17 18 449 1 423 1.55e-20 94.4
MS.gene038427.t1 AT5G56370 25.413 484 274 17 18 478 1 420 2.66e-20 93.6
MS.gene038427.t1 AT5G56370 25.413 484 274 17 18 478 1 420 2.66e-20 93.6
MS.gene038427.t1 AT5G22700 24.009 454 246 14 19 457 43 412 3.05e-20 93.2
MS.gene038427.t1 AT3G59200 28.753 393 215 14 19 383 7 362 5.54e-20 93.2
MS.gene038427.t1 AT5G56810 27.879 495 273 21 7 478 2 435 5.72e-20 92.4
MS.gene038427.t1 AT5G38590 25.056 443 275 15 18 456 1 390 1.00e-19 91.7
MS.gene038427.t1 AT1G78730 24.314 510 259 21 1 476 1 417 3.24e-19 90.1
MS.gene038427.t1 AT3G49020 26.625 477 281 18 19 479 22 445 5.92e-19 89.7
MS.gene038427.t1 AT4G10420 28.622 283 181 10 201 478 55 321 6.27e-19 88.2
MS.gene038427.t1 AT3G26920 30.241 291 173 12 201 478 66 339 1.32e-18 87.4
MS.gene038427.t1 AT3G26920 30.241 291 173 12 201 478 66 339 1.32e-18 87.4
MS.gene038427.t1 AT5G18780 25.105 478 288 17 19 476 11 438 1.82e-18 88.2
MS.gene038427.t1 AT5G18780 25.105 478 288 17 19 476 11 438 1.82e-18 88.2
MS.gene038427.t1 AT1G66290 24.746 493 288 23 7 476 18 450 2.11e-18 87.8
MS.gene038427.t1 AT3G42770 25.159 473 288 15 21 477 1 423 2.34e-18 88.2
MS.gene038427.t1 AT5G56700 25.063 395 244 12 73 458 8 359 3.08e-18 86.7
MS.gene038427.t1 AT3G58860 25.319 470 292 17 14 466 2 429 4.25e-18 87.0
MS.gene038427.t1 AT5G62970 25.451 499 285 21 18 479 1 449 6.30e-18 86.7
MS.gene038427.t1 AT3G59240 27.146 501 279 26 16 477 2 455 6.70e-18 86.7
MS.gene038427.t1 AT1G05080 24.738 477 293 17 19 479 13 439 8.21e-18 85.9
MS.gene038427.t1 AT3G51530 26.316 456 266 17 4 445 12 411 1.04e-17 85.9
MS.gene038427.t1 AT1G66320 23.944 497 291 17 7 476 18 454 1.62e-17 85.1
MS.gene038427.t1 AT5G41840 26.185 401 229 14 19 383 14 383 2.88e-17 84.7
MS.gene038427.t1 AT5G56390 25.106 470 297 15 18 478 1 424 3.88e-17 84.0
MS.gene038427.t1 AT4G15060 26.000 450 252 20 4 434 11 398 4.44e-17 83.6
MS.gene038427.t1 AT5G56410 26.201 458 264 21 18 449 1 410 6.12e-17 83.6
MS.gene038427.t1 AT1G16940 24.520 469 272 18 21 476 13 412 6.26e-17 83.2
MS.gene038427.t1 AT5G18770 25.934 482 285 20 19 475 24 458 6.32e-17 83.6
MS.gene038427.t1 AT3G60040 25.648 386 230 12 19 383 13 362 6.39e-17 84.0
MS.gene038427.t1 AT3G60040 25.648 386 230 12 19 383 230 579 9.99e-17 83.6
MS.gene038427.t1 AT3G58920 25.294 510 291 21 18 479 1 468 1.02e-16 82.8
MS.gene038427.t1 AT3G60040 25.648 386 230 12 19 383 232 581 1.16e-16 83.6
MS.gene038427.t1 AT3G60040 25.648 386 230 12 19 383 233 582 1.22e-16 83.6
MS.gene038427.t1 AT3G60040 25.648 386 230 12 19 383 232 581 1.24e-16 83.2
MS.gene038427.t1 AT5G44940 22.661 481 244 20 16 476 2 374 1.33e-16 82.0
MS.gene038427.t1 AT1G55030 27.101 476 268 21 19 478 9 421 2.47e-16 81.3
MS.gene038427.t1 AT4G09920 24.768 323 192 11 18 334 1 278 3.01e-16 80.1
MS.gene038427.t1 AT4G09920 24.768 323 192 11 18 334 1 278 3.01e-16 80.1
MS.gene038427.t1 AT1G55030 27.101 476 268 22 19 478 19 431 3.95e-16 80.9
MS.gene038427.t1 AT5G25850 25.586 512 271 19 18 475 19 474 4.01e-16 81.3
MS.gene038427.t1 AT5G56560 29.010 293 167 10 203 478 338 606 6.13e-16 80.9
MS.gene038427.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.24e-16 78.6
MS.gene038427.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.24e-16 78.6
MS.gene038427.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.24e-16 78.6
MS.gene038427.t1 AT3G58900 27.961 304 166 11 18 308 1 264 8.43e-16 79.0
MS.gene038427.t1 AT3G58900 27.961 304 166 11 18 308 1 264 8.43e-16 79.0
MS.gene038427.t1 AT3G58900 27.961 304 166 11 18 308 1 264 1.01e-15 78.6
MS.gene038427.t1 AT4G14103 30.847 295 158 14 19 305 8 264 2.04e-15 78.2
MS.gene038427.t1 AT4G14103 30.847 295 158 14 19 305 8 264 2.04e-15 78.2
MS.gene038427.t1 AT4G14103 30.847 295 158 14 19 305 8 264 2.16e-15 78.6
MS.gene038427.t1 AT1G55660 27.778 270 157 9 18 283 52 287 2.32e-15 77.8
MS.gene038427.t1 AT3G26922 28.840 319 176 12 19 332 14 286 3.02e-15 77.0
MS.gene038427.t1 AT3G26922 28.840 319 176 12 19 332 14 286 3.02e-15 77.0
MS.gene038427.t1 AT3G26930 27.629 485 265 21 19 479 21 443 3.86e-15 77.8
MS.gene038427.t1 AT3G58930 23.553 501 311 16 18 478 1 469 4.22e-15 77.8
MS.gene038427.t1 AT3G58930 23.553 501 311 16 18 478 1 469 4.22e-15 77.8
MS.gene038427.t1 AT3G58930 23.553 501 311 16 18 478 1 469 4.22e-15 77.8
MS.gene038427.t1 AT5G22730 26.812 414 223 20 1 383 10 374 5.29e-15 77.0
MS.gene038427.t1 AT3G56780 23.810 525 268 20 21 476 9 470 7.73e-15 77.0
MS.gene038427.t1 AT5G38590 25.234 321 190 12 18 334 1 275 1.89e-14 74.3
MS.gene038427.t1 AT5G22660 25.434 346 182 10 19 338 13 308 2.28e-14 74.3
MS.gene038427.t1 AT5G41830 27.342 395 229 14 15 383 9 371 3.00e-14 75.5
MS.gene038427.t1 AT3G49480 23.769 467 276 17 19 459 12 424 4.06e-14 74.7
MS.gene038427.t1 AT4G14096 26.633 398 209 17 19 405 8 333 5.75e-14 74.3
MS.gene038427.t1 AT4G14096 26.633 398 209 17 19 405 8 333 5.75e-14 74.3
MS.gene038427.t1 AT2G42730 24.375 480 307 18 19 477 5 449 1.19e-13 73.2
MS.gene038427.t1 AT5G56325 25.940 266 174 9 223 478 11 263 1.46e-13 71.2
MS.gene038427.t1 AT4G22280 25.000 476 278 21 18 478 1 412 2.06e-13 72.4
MS.gene038427.t1 AT4G00320 27.318 399 224 18 15 383 9 371 3.66e-13 72.0
MS.gene038427.t1 AT3G26920 28.269 283 150 12 201 478 66 300 3.96e-13 70.5
MS.gene038427.t1 AT5G44980 27.108 332 183 15 17 330 2 292 5.15e-13 70.1
MS.gene038427.t1 AT5G44980 27.108 332 183 15 17 330 2 292 5.15e-13 70.1
MS.gene038427.t1 AT2G26030 27.899 276 165 13 225 476 18 283 6.01e-13 69.7
MS.gene038427.t1 AT5G44850 23.358 411 219 17 73 476 7 328 6.83e-13 70.1
MS.gene038427.t1 AT5G56810 28.472 288 150 11 7 281 2 246 8.31e-13 69.7
MS.gene038427.t1 AT5G38390 25.427 468 255 17 18 449 1 410 8.66e-13 70.5
MS.gene038427.t1 AT5G18770 26.509 381 219 15 19 380 24 362 9.23e-13 70.1
MS.gene038427.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.00e-12 70.1
MS.gene038427.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.00e-12 70.1
MS.gene038427.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.00e-12 70.1
MS.gene038427.t1 AT5G35995 24.187 492 299 20 19 478 5 454 1.29e-12 70.1
MS.gene038427.t1 AT5G35995 24.187 492 299 20 19 478 5 454 1.29e-12 70.1
MS.gene038427.t1 AT5G18780 25.377 398 232 15 19 400 11 359 1.87e-12 69.3
MS.gene038427.t1 AT5G18780 25.377 398 232 15 19 400 11 359 1.87e-12 69.3
MS.gene038427.t1 AT3G59190 24.826 431 257 17 14 427 7 387 3.88e-12 68.2
MS.gene038427.t1 AT3G59190 27.303 304 182 10 14 310 7 278 5.49e-12 68.2
MS.gene038427.t1 AT3G26930 26.039 457 253 20 47 479 3 398 9.41e-12 67.0
MS.gene038427.t1 AT4G27050 22.619 504 295 20 17 478 2 452 1.07e-11 67.4
MS.gene038427.t1 AT4G27050 22.619 504 295 20 17 478 2 452 1.07e-11 67.4
MS.gene038427.t1 AT4G27050 22.619 504 295 20 17 478 2 452 1.07e-11 67.4
MS.gene038427.t1 AT4G27050 22.619 504 295 20 17 478 2 452 1.07e-11 67.4
MS.gene038427.t1 AT4G27050 22.619 504 295 20 17 478 2 452 1.07e-11 67.4
MS.gene038427.t1 AT1G56610 28.346 254 142 6 24 275 15 230 1.26e-11 67.0
MS.gene038427.t1 AT5G22600 25.414 362 196 13 148 477 1 320 1.44e-11 66.2
MS.gene038427.t1 AT5G22600 25.414 362 196 13 148 477 1 320 1.44e-11 66.2
MS.gene038427.t1 AT5G53640 27.232 224 111 7 19 237 22 198 1.44e-11 64.7
MS.gene038427.t1 AT3G52690 28.041 296 179 13 199 478 20 297 1.95e-11 65.5
MS.gene038427.t1 AT1G56610 29.134 254 140 7 24 275 78 293 2.48e-11 66.2
MS.gene038427.t1 AT5G41630 27.232 224 126 7 19 235 12 205 4.42e-11 65.5
MS.gene038427.t1 AT5G56700 27.511 229 130 8 87 310 22 219 4.50e-11 63.9
MS.gene038427.t1 AT1G48400 29.412 255 133 10 19 263 10 227 9.01e-11 64.3
MS.gene038427.t1 AT1G48400 29.091 275 144 11 19 279 10 247 9.97e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTAGACATGTATAATT+TGG 0.197938 5.4:+73500475 MS.gene038427:CDS
GGTTCAACAGATTCACTTTC+AGG 0.208119 5.4:-73500770 None:intergenic
CTCGCAAATGGCGCAATCTT+TGG 0.272398 5.4:+73499637 MS.gene038427:CDS
TTACCGCCGCCGGCTTCAAC+AGG 0.285165 5.4:+73499910 MS.gene038427:CDS
CGAAGTGTGGCCAAAGATTC+AGG 0.291932 5.4:-73500566 None:intergenic
TAAAGCAAGTGGCGAAATTC+AGG 0.293563 5.4:-73500989 None:intergenic
TGAATCTTTGGCCACACTTC+GGG 0.320102 5.4:+73500568 MS.gene038427:CDS
AAATGGGATACAAGACATTT+AGG 0.331229 5.4:-73501242 None:intergenic
CTGTCCTGTTCTCGAAAATC+TGG 0.345977 5.4:+73500529 MS.gene038427:CDS
ATTCATCACCTTCATATGAA+TGG 0.356856 5.4:+73501198 MS.gene038427:CDS
TGTGGTACGAATGCAGGTTT+TGG 0.357467 5.4:-73499604 None:intergenic
GTCAATCGAGTGGTTATAGA+AGG 0.357684 5.4:-73499832 None:intergenic
GATGAAACTCCTCGAGGTTT+GGG 0.377236 5.4:-73499878 None:intergenic
AGATGAAACTCCTCGAGGTT+TGG 0.379740 5.4:-73499879 None:intergenic
GAAGGTCAATAAAGGTCAAA+TGG 0.381046 5.4:-73501259 None:intergenic
GTTATCGAATTCATAAATTA+CGG 0.385345 5.4:-73499700 None:intergenic
GGAGAGGATGTGATGTAGTA+AGG 0.386148 5.4:-73499571 None:intergenic
GGGCAAGAGAAGAGGGAAAC+AGG 0.388572 5.4:-73499936 None:intergenic
ATGTGATGTAGTAAGGAGTT+TGG 0.398364 5.4:-73499564 None:intergenic
TCCGCAAATCTCGCATTGTT+CGG 0.399549 5.4:+73499772 MS.gene038427:CDS
GACTCTGCCGCCTCCGCCAT+CGG 0.401729 5.4:-73499501 None:intergenic
TCCGAACAATGCGAGATTTG+CGG 0.403727 5.4:-73499773 None:intergenic
ATCGTCAAATTCTCTATCAT+AGG 0.406822 5.4:+73500012 MS.gene038427:CDS
AGCATCACGAAACGTGATAT+TGG 0.407324 5.4:-73500690 None:intergenic
TTGGAAGAATCTCGAAGCCT+TGG 0.421279 5.4:+73499656 MS.gene038427:CDS
CTCCTCGAGGTTTGGGCCAA+TGG 0.421806 5.4:-73499871 None:intergenic
AGTCTTCTCCGAGCTCTCTC+TGG 0.426037 5.4:+73500800 MS.gene038427:CDS
CACCCCTCGTTTCTCGCAAA+TGG 0.426304 5.4:+73499625 MS.gene038427:CDS
TTTCGTGATGCTGCTTCTGT+TGG 0.427729 5.4:+73500701 MS.gene038427:CDS
ACTTGCTTTATATAGAGCTT+TGG 0.428633 5.4:+73501002 MS.gene038427:CDS
TGACACGTGGCAGATGCCTT+TGG 0.439487 5.4:-73501419 None:intergenic
AATTTCCGAGATATTCTTGA+AGG 0.442176 5.4:-73501277 None:intergenic
TTCATCACCTTCATATGAAT+GGG 0.445404 5.4:+73501199 MS.gene038427:CDS
TTATCGAATTCATAAATTAC+GGG 0.447046 5.4:-73499699 None:intergenic
GGATACTCCGATGGCGGAGG+CGG 0.450270 5.4:+73499494 MS.gene038427:CDS
TGCCTGAGAGAGACAAGGTT+AGG 0.451617 5.4:-73499957 None:intergenic
TCTGCAATTGCAAGACGATT+CGG 0.452828 5.4:+73500421 MS.gene038427:CDS
TTCACTTCCCATTCATATGA+AGG 0.453446 5.4:-73501206 None:intergenic
GTAGTAAGGAGTTTGGTAGT+TGG 0.454541 5.4:-73499557 None:intergenic
ATATTCTTGAAGGTCAATAA+AGG 0.454998 5.4:-73501267 None:intergenic
GCCCTAACCTTGTCTCTCTC+AGG 0.455076 5.4:+73499955 MS.gene038427:CDS
CTGAATCTTTGGCCACACTT+CGG 0.455360 5.4:+73500567 MS.gene038427:CDS
GATCAGGCGCGTCTATTTCA+AGG 0.461395 5.4:-73500649 None:intergenic
ATCAATGTTGAGAATGAGGT+TGG 0.461553 5.4:+73500620 MS.gene038427:CDS
TCTCGGAAATTTAAATGAGC+TGG 0.464659 5.4:+73501289 MS.gene038427:CDS
TTCGTGATGCTGCTTCTGTT+GGG 0.465190 5.4:+73500702 MS.gene038427:CDS
GTTTAATTCCAGAGAGAGCT+CGG 0.466178 5.4:-73500808 None:intergenic
TCAATGTTGAGAATGAGGTT+GGG 0.476409 5.4:+73500621 MS.gene038427:CDS
ATTGACCTTCAAGAATATCT+CGG 0.477906 5.4:+73501272 MS.gene038427:CDS
GGCAGATGCCTTTGGTAGAT+CGG 0.483284 5.4:-73501411 None:intergenic
TCTGTGAATGTCCTTCTCTC+TGG 0.486132 5.4:+73500506 MS.gene038427:CDS
AAGGTCAATAAAGGTCAAAT+GGG 0.501175 5.4:-73501258 None:intergenic
CACCCTGTTGAAGCCGGCGG+CGG 0.502744 5.4:-73499913 None:intergenic
CAATGTTGAGAATGAGGTTG+GGG 0.505466 5.4:+73500622 MS.gene038427:CDS
AACAGGCACCCTGTTGAAGC+CGG 0.507985 5.4:-73499919 None:intergenic
GTTATGAGAGTTTGTAGCAC+AGG 0.517195 5.4:-73501073 None:intergenic
ACGTGATATTGGTGAGACTA+AGG 0.517984 5.4:-73500679 None:intergenic
AGACTAAGGTACTTGAGATC+AGG 0.518799 5.4:-73500665 None:intergenic
CTCCGCCATCGGAGTATCCA+TGG 0.520160 5.4:-73499490 None:intergenic
TCGTCAAATTCTCTATCATA+GGG 0.520873 5.4:+73500013 MS.gene038427:CDS
ACGTGGATCAATGCCGCCAT+TGG 0.525825 5.4:+73499855 MS.gene038427:CDS
AATTCAGGAAAATCTAAGAC+AGG 0.526097 5.4:-73500974 None:intergenic
GCTCGGAGAAGACTGAGTAC+AGG 0.526432 5.4:-73500791 None:intergenic
GAATTCATAAATTACGGGGC+TGG 0.526816 5.4:-73499694 None:intergenic
GAGGGGTGTGGTACGAATGC+AGG 0.527172 5.4:-73499610 None:intergenic
TCTGTCAATGTCGTCATCGT+CGG 0.528078 5.4:-73499529 None:intergenic
CTCACTCTGCTTACCGCCGC+CGG 0.531519 5.4:+73499900 MS.gene038427:CDS
AACAGATTCACTTTCAGGAG+TGG 0.531982 5.4:-73500765 None:intergenic
GTCAATGTCGTCATCGTCGG+AGG 0.548656 5.4:-73499526 None:intergenic
GCCTGAGAGAGACAAGGTTA+GGG 0.552761 5.4:-73499956 None:intergenic
GAACAGGACAGCCAGAGAGA+AGG 0.554699 5.4:-73500517 None:intergenic
AAGGTTAGGGCAAGAGAAGA+GGG 0.555833 5.4:-73499943 None:intergenic
GAGGACAGTGTTGACGAAAA+CGG 0.556678 5.4:-73499745 None:intergenic
CAAGGTTAGGGCAAGAGAAG+AGG 0.557826 5.4:-73499944 None:intergenic
TACCGCCGCCGGCTTCAACA+GGG 0.559701 5.4:+73499911 MS.gene038427:CDS
CTCGAGGTTTGGGCCAATGG+CGG 0.559983 5.4:-73499868 None:intergenic
GAAGGTGATGAATCAAATGA+TGG 0.561486 5.4:-73501188 None:intergenic
CATGGATACTCCGATGGCGG+AGG 0.564213 5.4:+73499491 None:intergenic
TGCGAGATTTGCGGAGAGTG+AGG 0.565813 5.4:-73499764 None:intergenic
TCTCATAACATTCAACTACA+AGG 0.568167 5.4:+73501087 MS.gene038427:CDS
GCTGCTTAGTTTAACTACAA+AGG 0.572115 5.4:+73500838 MS.gene038427:CDS
GCGCCATTTGCGAGAAACGA+GGG 0.586636 5.4:-73499628 None:intergenic
TTTGCGAGAAACGAGGGGTG+TGG 0.589736 5.4:-73499622 None:intergenic
GGAACTGTCGCAGAAATCCA+AGG 0.603410 5.4:-73499673 None:intergenic
AAAGCTCTATATAAAGCAAG+TGG 0.607124 5.4:-73501000 None:intergenic
TGAAGATGACACCCGAAGTG+TGG 0.610539 5.4:-73500579 None:intergenic
TTCAGGAAAATCTAAGACAG+GGG 0.611075 5.4:-73500972 None:intergenic
GGAGGCCATGGATACTCCGA+TGG 0.617706 5.4:+73499485 None:intergenic
TGTCATCTTCAACCTTGAAG+AGG 0.618499 5.4:+73500591 MS.gene038427:CDS
GGCCATGGATACTCCGATGG+CGG 0.619860 5.4:+73499488 None:intergenic
TGTTGGGAACTTGCACAATG+TGG 0.624137 5.4:+73500718 MS.gene038427:CDS
TGCGCCATTTGCGAGAAACG+AGG 0.630626 5.4:-73499629 None:intergenic
CGCCATTTGCGAGAAACGAG+GGG 0.635930 5.4:-73499627 None:intergenic
CGCCATTGGCCCAAACCTCG+AGG 0.640548 5.4:+73499869 MS.gene038427:CDS
TCAATCGAGTGGTTATAGAA+GGG 0.641238 5.4:-73499831 None:intergenic
ATTCAGGAAAATCTAAGACA+GGG 0.645585 5.4:-73500973 None:intergenic
GAACGTGATAGCATGAGAGA+CGG 0.645881 5.4:-73499800 None:intergenic
AGGCACCCTGTTGAAGCCGG+CGG 0.664495 5.4:-73499916 None:intergenic
TGATCCACGTGTCAATCGAG+TGG 0.668936 5.4:-73499842 None:intergenic
AGTTGCAGCAACTTCAGTGA+CGG 0.673174 5.4:-73500455 None:intergenic
TATCGAATTCATAAATTACG+GGG 0.674759 5.4:-73499698 None:intergenic
GTGAAATTTAACTTGACACG+TGG 0.694107 5.4:-73501432 None:intergenic
ATTGTTGCCTGAGAGAGACA+AGG 0.696101 5.4:-73499962 None:intergenic
ATAACCACTCGATTGACACG+TGG 0.713847 5.4:+73499838 MS.gene038427:CDS
GAGTGAGATGAAACTCCTCG+AGG 0.759501 5.4:-73499884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACGATAAAAAACAAAAAGAA+AGG - chr5.4:73499997-73500016 None:intergenic 20.0%
!! ATTAACAGCTTATTTCAATA+GGG + chr5.4:73500247-73500266 MS.gene038427:intron 20.0%
!! GTTATCGAATTCATAAATTA+CGG - chr5.4:73499703-73499722 None:intergenic 20.0%
!! TTATCGAATTCATAAATTAC+GGG - chr5.4:73499702-73499721 None:intergenic 20.0%
! AAAAATCAATGTTGAGAATG+AGG + chr5.4:73500616-73500635 MS.gene038427:CDS 25.0%
! AAACAAAAAGAAAGGATGAA+AGG - chr5.4:73499989-73500008 None:intergenic 25.0%
! ACTACTAGACATGTATAATT+TGG + chr5.4:73500475-73500494 MS.gene038427:CDS 25.0%
! ATATTCTTGAAGGTCAATAA+AGG - chr5.4:73501270-73501289 None:intergenic 25.0%
! CATTAACAGCTTATTTCAAT+AGG + chr5.4:73500246-73500265 MS.gene038427:intron 25.0%
! TATCGAATTCATAAATTACG+GGG - chr5.4:73499701-73499720 None:intergenic 25.0%
! TTCAAATTATTATCCCTGTT+GGG - chr5.4:73500119-73500138 None:intergenic 25.0%
! TTTCAAATTATTATCCCTGT+TGG - chr5.4:73500120-73500139 None:intergenic 25.0%
!!! ATTGATTTTTAACCTCTTCA+AGG - chr5.4:73500606-73500625 None:intergenic 25.0%
AAAGCTCTATATAAAGCAAG+TGG - chr5.4:73501003-73501022 None:intergenic 30.0%
AAATGGGATACAAGACATTT+AGG - chr5.4:73501245-73501264 None:intergenic 30.0%
AAGGTCAATAAAGGTCAAAT+GGG - chr5.4:73501261-73501280 None:intergenic 30.0%
AATTTCCGAGATATTCTTGA+AGG - chr5.4:73501280-73501299 None:intergenic 30.0%
ACTTGCTTTATATAGAGCTT+TGG + chr5.4:73501002-73501021 MS.gene038427:CDS 30.0%
AGTCTATTCAAACATACAAC+TGG + chr5.4:73500064-73500083 MS.gene038427:intron 30.0%
ATCGTCAAATTCTCTATCAT+AGG + chr5.4:73500012-73500031 MS.gene038427:CDS 30.0%
ATTCATCACCTTCATATGAA+TGG + chr5.4:73501198-73501217 MS.gene038427:CDS 30.0%
ATTGACCTTCAAGAATATCT+CGG + chr5.4:73501272-73501291 MS.gene038427:CDS 30.0%
TCGTCAAATTCTCTATCATA+GGG + chr5.4:73500013-73500032 MS.gene038427:CDS 30.0%
TCTCATAACATTCAACTACA+AGG + chr5.4:73501087-73501106 MS.gene038427:CDS 30.0%
TTCATCACCTTCATATGAAT+GGG + chr5.4:73501199-73501218 MS.gene038427:CDS 30.0%
TTCATGACAACTTACTAATC+CGG - chr5.4:73500211-73500230 None:intergenic 30.0%
! AATTCAGGAAAATCTAAGAC+AGG - chr5.4:73500977-73500996 None:intergenic 30.0%
! ACAAGCTATGTTTTGCAAAA+TGG + chr5.4:73501317-73501336 MS.gene038427:CDS 30.0%
! AGACATTTAGGAACACTTTT+CGG - chr5.4:73501233-73501252 None:intergenic 30.0%
! ATTCAGGAAAATCTAAGACA+GGG - chr5.4:73500976-73500995 None:intergenic 30.0%
AAAAATCTCCGATCTACCAA+AGG + chr5.4:73501403-73501422 MS.gene038427:CDS 35.0%
ATCAATGTTGAGAATGAGGT+TGG + chr5.4:73500620-73500639 MS.gene038427:CDS 35.0%
ATGTGATGTAGTAAGGAGTT+TGG - chr5.4:73499567-73499586 None:intergenic 35.0%
GAAGGTCAATAAAGGTCAAA+TGG - chr5.4:73501262-73501281 None:intergenic 35.0%
GAAGGTGATGAATCAAATGA+TGG - chr5.4:73501191-73501210 None:intergenic 35.0%
GCTGCTTAGTTTAACTACAA+AGG + chr5.4:73500838-73500857 MS.gene038427:CDS 35.0%
TCAATCGAGTGGTTATAGAA+GGG - chr5.4:73499834-73499853 None:intergenic 35.0%
TCAATGTTGAGAATGAGGTT+GGG + chr5.4:73500621-73500640 MS.gene038427:CDS 35.0%
TCTCGGAAATTTAAATGAGC+TGG + chr5.4:73501289-73501308 MS.gene038427:CDS 35.0%
TTCACTTCCCATTCATATGA+AGG - chr5.4:73501209-73501228 None:intergenic 35.0%
! AGTTTTTCGCTAGAACAACA+GGG + chr5.4:73501368-73501387 MS.gene038427:CDS 35.0%
! TTCAGGAAAATCTAAGACAG+GGG - chr5.4:73500975-73500994 None:intergenic 35.0%
! TTCTTTTGCTCCTGAATCTT+TGG + chr5.4:73500556-73500575 MS.gene038427:CDS 35.0%
!! AATCAAATGATGGATGCATC+TGG - chr5.4:73501181-73501200 None:intergenic 35.0%
!! ATTTCCAGATTTTCGAGAAC+AGG - chr5.4:73500536-73500555 None:intergenic 35.0%
!! GTGAAATTTAACTTGACACG+TGG - chr5.4:73501435-73501454 None:intergenic 35.0%
!!! GTGTGCGTGTATTTTTTGTT+TGG + chr5.4:73501128-73501147 MS.gene038427:intron 35.0%
AACAGATTCACTTTCAGGAG+TGG - chr5.4:73500768-73500787 None:intergenic 40.0%
ACAACTGGATCTATGAAGCA+CGG + chr5.4:73500079-73500098 MS.gene038427:intron 40.0%
ACGTGATATTGGTGAGACTA+AGG - chr5.4:73500682-73500701 None:intergenic 40.0%
AGCATCACGAAACGTGATAT+TGG - chr5.4:73500693-73500712 None:intergenic 40.0%
CAATGTTGAGAATGAGGTTG+GGG + chr5.4:73500622-73500641 MS.gene038427:CDS 40.0%
GAATTCATAAATTACGGGGC+TGG - chr5.4:73499697-73499716 None:intergenic 40.0%
GGTTCAACAGATTCACTTTC+AGG - chr5.4:73500773-73500792 None:intergenic 40.0%
GTCAATCGAGTGGTTATAGA+AGG - chr5.4:73499835-73499854 None:intergenic 40.0%
GTTATGAGAGTTTGTAGCAC+AGG - chr5.4:73501076-73501095 None:intergenic 40.0%
GTTTAATTCCAGAGAGAGCT+CGG - chr5.4:73500811-73500830 None:intergenic 40.0%
TAAAGCAAGTGGCGAAATTC+AGG - chr5.4:73500992-73501011 None:intergenic 40.0%
TCTGCAATTGCAAGACGATT+CGG + chr5.4:73500421-73500440 MS.gene038427:CDS 40.0%
TGTCATCTTCAACCTTGAAG+AGG + chr5.4:73500591-73500610 MS.gene038427:CDS 40.0%
TTGTGTCGTGTTTGTGACAT+GGG + chr5.4:73500171-73500190 MS.gene038427:intron 40.0%
! AGACTAAGGTACTTGAGATC+AGG - chr5.4:73500668-73500687 None:intergenic 40.0%
! CAGTTTTTCGCTAGAACAAC+AGG + chr5.4:73501367-73501386 MS.gene038427:CDS 40.0%
! CTTTTGTCTTGTACAAGCAG+TGG + chr5.4:73500939-73500958 MS.gene038427:intron 40.0%
! GTAGTAAGGAGTTTGGTAGT+TGG - chr5.4:73499560-73499579 None:intergenic 40.0%
! GTTTTTCGCTAGAACAACAG+GGG + chr5.4:73501369-73501388 MS.gene038427:CDS 40.0%
! TTTTTCGCTAGAACAACAGG+GGG + chr5.4:73501370-73501389 MS.gene038427:CDS 40.0%
!! TACGAATGCAGGTTTTGGTA+GGG - chr5.4:73499602-73499621 None:intergenic 40.0%
AAGGTTAGGGCAAGAGAAGA+GGG - chr5.4:73499946-73499965 None:intergenic 45.0%
AGATGAAACTCCTCGAGGTT+TGG - chr5.4:73499882-73499901 None:intergenic 45.0%
AGTTGCAGCAACTTCAGTGA+CGG - chr5.4:73500458-73500477 None:intergenic 45.0%
ATAACCACTCGATTGACACG+TGG + chr5.4:73499838-73499857 MS.gene038427:CDS 45.0%
ATGGATGCATCTGGCAACAA+TGG - chr5.4:73501172-73501191 None:intergenic 45.0%
ATTGTTGCCTGAGAGAGACA+AGG - chr5.4:73499965-73499984 None:intergenic 45.0%
CTGAATCTTTGGCCACACTT+CGG + chr5.4:73500567-73500586 MS.gene038427:CDS 45.0%
CTGTCCTGTTCTCGAAAATC+TGG + chr5.4:73500529-73500548 MS.gene038427:CDS 45.0%
CTTGTGTCGTGTTTGTGACA+TGG + chr5.4:73500170-73500189 MS.gene038427:intron 45.0%
GAACGTGATAGCATGAGAGA+CGG - chr5.4:73499803-73499822 None:intergenic 45.0%
GATGAAACTCCTCGAGGTTT+GGG - chr5.4:73499881-73499900 None:intergenic 45.0%
GGAGAGGATGTGATGTAGTA+AGG - chr5.4:73499574-73499593 None:intergenic 45.0%
TCCGAACAATGCGAGATTTG+CGG - chr5.4:73499776-73499795 None:intergenic 45.0%
TCCGCAAATCTCGCATTGTT+CGG + chr5.4:73499772-73499791 MS.gene038427:CDS 45.0%
TCTGTCAATGTCGTCATCGT+CGG - chr5.4:73499532-73499551 None:intergenic 45.0%
TCTGTGAATGTCCTTCTCTC+TGG + chr5.4:73500506-73500525 MS.gene038427:CDS 45.0%
TGAATCTTTGGCCACACTTC+GGG + chr5.4:73500568-73500587 MS.gene038427:CDS 45.0%
TGTGTCGTGTTTGTGACATG+GGG + chr5.4:73500172-73500191 MS.gene038427:intron 45.0%
TGTTGGGAACTTGCACAATG+TGG + chr5.4:73500718-73500737 MS.gene038427:CDS 45.0%
TTACTAATCCGGACACTCCT+CGG - chr5.4:73500200-73500219 None:intergenic 45.0%
TTGGAAGAATCTCGAAGCCT+TGG + chr5.4:73499656-73499675 MS.gene038427:CDS 45.0%
! TGTGGTACGAATGCAGGTTT+TGG - chr5.4:73499607-73499626 None:intergenic 45.0%
! TTCGTGATGCTGCTTCTGTT+GGG + chr5.4:73500702-73500721 MS.gene038427:CDS 45.0%
! TTTCGTGATGCTGCTTCTGT+TGG + chr5.4:73500701-73500720 MS.gene038427:CDS 45.0%
!! GAGGACAGTGTTGACGAAAA+CGG - chr5.4:73499748-73499767 None:intergenic 45.0%
!! GTACGAATGCAGGTTTTGGT+AGG - chr5.4:73499603-73499622 None:intergenic 45.0%
CAAGGTTAGGGCAAGAGAAG+AGG - chr5.4:73499947-73499966 None:intergenic 50.0%
CGAAGTGTGGCCAAAGATTC+AGG - chr5.4:73500569-73500588 None:intergenic 50.0%
CTCGCAAATGGCGCAATCTT+TGG + chr5.4:73499637-73499656 MS.gene038427:CDS 50.0%
GAGTGAGATGAAACTCCTCG+AGG - chr5.4:73499887-73499906 None:intergenic 50.0%
GATCAGGCGCGTCTATTTCA+AGG - chr5.4:73500652-73500671 None:intergenic 50.0%
GCCTGAGAGAGACAAGGTTA+GGG - chr5.4:73499959-73499978 None:intergenic 50.0%
GGAACTGTCGCAGAAATCCA+AGG - chr5.4:73499676-73499695 None:intergenic 50.0%
GGCAGATGCCTTTGGTAGAT+CGG - chr5.4:73501414-73501433 None:intergenic 50.0%
TGAAGATGACACCCGAAGTG+TGG - chr5.4:73500582-73500601 None:intergenic 50.0%
TGATCCACGTGTCAATCGAG+TGG - chr5.4:73499845-73499864 None:intergenic 50.0%
TGCCTGAGAGAGACAAGGTT+AGG - chr5.4:73499960-73499979 None:intergenic 50.0%
! TTTTGGTAGGGAGGAAGGAG+AGG - chr5.4:73499590-73499609 None:intergenic 50.0%
!! GAATGCAGGTTTTGGTAGGG+AGG - chr5.4:73499599-73499618 None:intergenic 50.0%
AACAGGCACCCTGTTGAAGC+CGG - chr5.4:73499922-73499941 None:intergenic 55.0%
ACACCTACACACGTCCCAAC+AGG + chr5.4:73500102-73500121 MS.gene038427:intron 55.0%
ACGTGGATCAATGCCGCCAT+TGG + chr5.4:73499855-73499874 MS.gene038427:CDS 55.0%
AGTCTTCTCCGAGCTCTCTC+TGG + chr5.4:73500800-73500819 MS.gene038427:CDS 55.0%
ATCCCTGTTGGGACGTGTGT+AGG - chr5.4:73500108-73500127 None:intergenic 55.0%
CACCCCTCGTTTCTCGCAAA+TGG + chr5.4:73499625-73499644 MS.gene038427:CDS 55.0%
CACCTACACACGTCCCAACA+GGG + chr5.4:73500103-73500122 MS.gene038427:intron 55.0%
CGCCATTTGCGAGAAACGAG+GGG - chr5.4:73499630-73499649 None:intergenic 55.0%
CGCTAGAACAACAGGGGGAA+TGG + chr5.4:73501375-73501394 MS.gene038427:CDS 55.0%
GAACAGGACAGCCAGAGAGA+AGG - chr5.4:73500520-73500539 None:intergenic 55.0%
GCCCTAACCTTGTCTCTCTC+AGG + chr5.4:73499955-73499974 MS.gene038427:CDS 55.0%
GCGCCATTTGCGAGAAACGA+GGG - chr5.4:73499631-73499650 None:intergenic 55.0%
GCTCGGAGAAGACTGAGTAC+AGG - chr5.4:73500794-73500813 None:intergenic 55.0%
GGGCAAGAGAAGAGGGAAAC+AGG - chr5.4:73499939-73499958 None:intergenic 55.0%
GTCAATGTCGTCATCGTCGG+AGG - chr5.4:73499529-73499548 None:intergenic 55.0%
GTTTGTGACATGGGGATCCG+AGG + chr5.4:73500180-73500199 MS.gene038427:intron 55.0%
TGACACGTGGCAGATGCCTT+TGG - chr5.4:73501422-73501441 None:intergenic 55.0%
TGCGAGATTTGCGGAGAGTG+AGG - chr5.4:73499767-73499786 None:intergenic 55.0%
TGCGCCATTTGCGAGAAACG+AGG - chr5.4:73499632-73499651 None:intergenic 55.0%
TTTGCGAGAAACGAGGGGTG+TGG - chr5.4:73499625-73499644 None:intergenic 55.0%
!! GCAGGTTTTGGTAGGGAGGA+AGG - chr5.4:73499595-73499614 None:intergenic 55.0%
CTCCTCGAGGTTTGGGCCAA+TGG - chr5.4:73499874-73499893 None:intergenic 60.0%
CTCGAGGTTTGGGCCAATGG+CGG - chr5.4:73499871-73499890 None:intergenic 60.0%
! GAGGGGTGTGGTACGAATGC+AGG - chr5.4:73499613-73499632 None:intergenic 60.0%
!! ATGGGGATCCGAGGAGTGTC+CGG + chr5.4:73500189-73500208 MS.gene038427:intron 60.0%
AGGCACCCTGTTGAAGCCGG+CGG - chr5.4:73499919-73499938 None:intergenic 65.0%
CGCCATTGGCCCAAACCTCG+AGG + chr5.4:73499869-73499888 MS.gene038427:CDS 65.0%
CTCACTCTGCTTACCGCCGC+CGG + chr5.4:73499900-73499919 MS.gene038427:CDS 65.0%
!! GGATACTCCGATGGCGGAGG+CGG + chr5.4:73499494-73499513 MS.gene038427:CDS 65.0%
!! TACCGCCGCCGGCTTCAACA+GGG + chr5.4:73499911-73499930 MS.gene038427:CDS 65.0%
!! TTACCGCCGCCGGCTTCAAC+AGG + chr5.4:73499910-73499929 MS.gene038427:CDS 65.0%
CACCCTGTTGAAGCCGGCGG+CGG - chr5.4:73499916-73499935 None:intergenic 70.0%
GACTCTGCCGCCTCCGCCAT+CGG - chr5.4:73499504-73499523 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 73499492 73501457 73499492 ID=MS.gene038427
chr5.4 mRNA 73499492 73501457 73499492 ID=MS.gene038427.t1;Parent=MS.gene038427
chr5.4 exon 73499492 73500048 73499492 ID=MS.gene038427.t1.exon1;Parent=MS.gene038427.t1
chr5.4 CDS 73499492 73500048 73499492 ID=cds.MS.gene038427.t1;Parent=MS.gene038427.t1
chr5.4 exon 73500403 73500859 73500403 ID=MS.gene038427.t1.exon2;Parent=MS.gene038427.t1
chr5.4 CDS 73500403 73500859 73500403 ID=cds.MS.gene038427.t1;Parent=MS.gene038427.t1
chr5.4 exon 73500959 73501108 73500959 ID=MS.gene038427.t1.exon3;Parent=MS.gene038427.t1
chr5.4 CDS 73500959 73501108 73500959 ID=cds.MS.gene038427.t1;Parent=MS.gene038427.t1
chr5.4 exon 73501182 73501457 73501182 ID=MS.gene038427.t1.exon4;Parent=MS.gene038427.t1
chr5.4 CDS 73501182 73501457 73501182 ID=cds.MS.gene038427.t1;Parent=MS.gene038427.t1
Gene Sequence

>MS.gene038427

ATGGATACTCCGATGGCGGAGGCGGCAGAGTCAACCTCCGACGATGACGACATTGACAGAATAAACCAACTACCAAACTCCTTACTACATCACATCCTCTCCTTCCTCCCTACCAAAACCTGCATTCGTACCACACCCCTCGTTTCTCGCAAATGGCGCAATCTTTGGAAGAATCTCGAAGCCTTGGATTTCTGCGACAGTTCCAGCCCCGTAATTTATGAATTCGATAACGACGAACAGTTCTTGATCTTCTCCGTTTTCGTCAACACTGTCCTCACTCTCCGCAAATCTCGCATTGTTCGGAAGTTCCGTCTCTCATGCTATCACGTTCAACTCGATCCCTTCTATAACCACTCGATTGACACGTGGATCAATGCCGCCATTGGCCCAAACCTCGAGGAGTTTCATCTCACTCTGCTTACCGCCGCCGGCTTCAACAGGGTGCCTGTTTCCCTCTTCTCTTGCCCTAACCTTGTCTCTCTCAGGCAACAATTCCTTTCATCCTTTCTTTTTGTTTTTTATCGTCAAATTCTCTATCATAGGGTAGTTAGTTTAATGTATGTAAGTTTATTAGTCTATTCAAACATACAACTGGATCTATGAAGCACGGACACCTACACACGTCCCAACAGGGATAATAATTTGAAAAAAAAGACACAATTCAGTGTAATCATAGATCTTGTGTCGTGTTTGTGACATGGGGATCCGAGGAGTGTCCGGATTAGTAAGTTGTCATGAAATAGACTCTTTTAAACATTAACAGCTTATTTCAATAGGGACTACAAATATATTTGCTTTTTTTATTTTTTATTTTTTTTATATTTGCACAGTTCAGCTGTTCTCTGATTTAGTTTAAATGAGATATGATACGTGATGATAACTTGACGTAACATTCATGTAATGTACTTCAGTTTCAATGACTATATCATTCTGCAATTGCAAGACGATTCGGAGATTTGTTTACCGTCACTGAAGTTGCTGCAACTACTAGACATGTATAATTTGGATTTAAATTCTGTGAATGTCCTTCTCTCTGGCTGTCCTGTTCTCGAAAATCTGGAAATTTCTTTTGCTCCTGAATCTTTGGCCACACTTCGGGTGTCATCTTCAACCTTGAAGAGGTTAAAAATCAATGTTGAGAATGAGGTTGGGGCTTACCTTGAAATAGACGCGCCTGATCTCAAGTACCTTAGTCTCACCAATATCACGTTTCGTGATGCTGCTTCTGTTGGGAACTTGCACAATGTGGAAGAAGCACATCTAGATGTATTTTCCACTCCTGAAAGTGAATCTGTTGAACCTGTACTCAGTCTTCTCCGAGCTCTCTCTGGAATTAAACATCTAGAGCTGCTTAGTTTAACTACAAAGGTGAGTGATTAAAGTTTTTATTATTTGTATTATATGTTGTTTTGTGCTAATTATTATTAAATAATCACTTAATCACTTGCTTTTGTCTTGTACAAGCAGTGGCTATTTGCTGCCCCTGTCTTAGATTTTCCTGAATTTCGCCACTTGCTTTATATAGAGCTTTGGTTTCTCTCTGTCAACATAAGTTTTCTGATCGACATGCTTCAAAAATGTCCTGTGCTACAAACTCTCATAACATTCAACTACAAGGTTTGTCTAGAGCTTTGTTGTGTGCGTGTATTTTTTGTTTGGATCTTACATGTGAGTTGTCCATTGTTGCCAGATGCATCCATCATTTGATTCATCACCTTCATATGAATGGGAAGTGAAGCCGAAAAGTGTTCCTAAATGTCTTGTATCCCATTTGACCTTTATTGACCTTCAAGAATATCTCGGAAATTTAAATGAGCTGGAATTTACAAGCTATGTTTTGCAAAATGGACTTGTTTTGAAGACAATGCATATTCGCAGTTTTTCGCTAGAACAACAGGGGGAATGGTTGAAAAAAATCTCCGATCTACCAAAGGCATCTGCCACGTGTCAAGTTAAATTTCACTGA

Protein sequence

>MS.gene038427.t1

MDTPMAEAAESTSDDDDIDRINQLPNSLLHHILSFLPTKTCIRTTPLVSRKWRNLWKNLEALDFCDSSSPVIYEFDNDEQFLIFSVFVNTVLTLRKSRIVRKFRLSCYHVQLDPFYNHSIDTWINAAIGPNLEEFHLTLLTAAGFNRVPVSLFSCPNLVSLRQQFLSSFLFVFYRQILYHRVVSLIFNDYIILQLQDDSEICLPSLKLLQLLDMYNLDLNSVNVLLSGCPVLENLEISFAPESLATLRVSSSTLKRLKINVENEVGAYLEIDAPDLKYLSLTNITFRDAASVGNLHNVEEAHLDVFSTPESESVEPVLSLLRALSGIKHLELLSLTTKWLFAAPVLDFPEFRHLLYIELWFLSVNISFLIDMLQKCPVLQTLITFNYKMHPSFDSSPSYEWEVKPKSVPKCLVSHLTFIDLQEYLGNLNELEFTSYVLQNGLVLKTMHIRSFSLEQQGEWLKKISDLPKASATCQVKFH