AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64984


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64984.t1 MTR_8g062080 92.936 453 26 2 48 497 1 450 0.0 864
MS.gene64984.t1 MTR_8g070950 58.716 436 156 8 73 496 15 438 1.20e-163 470
MS.gene64984.t1 MTR_8g062010 56.951 446 164 9 66 496 2 434 7.71e-158 456
MS.gene64984.t1 MTR_8g062310 53.778 450 181 10 48 492 1 428 4.58e-149 433
MS.gene64984.t1 MTR_8g469020 51.183 465 172 13 72 496 6 455 3.95e-143 419
MS.gene64984.t1 MTR_8g058965 52.735 457 176 11 73 497 13 461 4.01e-142 416
MS.gene64984.t1 MTR_8g062300 50.104 481 183 11 63 497 13 482 5.17e-141 414
MS.gene64984.t1 MTR_4g050250 49.070 430 161 13 53 438 5 420 4.70e-117 351
MS.gene64984.t1 MTR_8g467790 48.303 383 142 7 73 436 148 493 2.29e-105 324
MS.gene64984.t1 MTR_2g083840 41.928 446 228 12 71 492 19 457 3.99e-89 280
MS.gene64984.t1 MTR_8g062270 39.216 459 222 18 71 491 14 453 1.17e-75 245
MS.gene64984.t1 MTR_8g468810 38.166 469 251 16 54 492 4 463 1.50e-75 245
MS.gene64984.t1 MTR_8g058970 37.607 468 235 15 73 492 19 477 8.59e-74 241
MS.gene64984.t1 MTR_5g092960 37.500 472 239 15 60 491 6 461 2.75e-71 234
MS.gene64984.t1 MTR_8g014260 38.222 450 234 20 73 492 16 451 7.89e-68 225
MS.gene64984.t1 MTR_4g032730 36.875 480 236 17 64 491 2 466 1.19e-67 224
MS.gene64984.t1 MTR_8g468840 37.472 451 233 15 73 490 14 448 5.62e-65 217
MS.gene64984.t1 MTR_8g467800 39.644 449 227 16 73 492 20 453 2.89e-64 216
MS.gene64984.t1 MTR_8g468760 37.802 455 206 16 71 491 7 418 1.49e-63 213
MS.gene64984.t1 MTR_8g445780 38.287 397 210 13 69 445 9 390 1.45e-58 199
MS.gene64984.t1 MTR_2g086020 67.586 145 47 0 352 496 175 319 2.65e-58 196
MS.gene64984.t1 MTR_2g086020 55.405 148 57 3 99 243 1 142 1.36e-37 140
MS.gene64984.t1 MTR_8g468810 38.196 377 196 15 54 402 4 371 6.04e-53 183
MS.gene64984.t1 MTR_8g014160 34.910 444 206 18 73 492 41 425 9.85e-51 179
MS.gene64984.t1 MTR_5g092960 37.203 379 189 12 60 402 6 371 2.00e-50 177
MS.gene64984.t1 MTR_8g468810 39.667 300 154 11 54 331 4 298 1.53e-44 159
MS.gene64984.t1 MTR_8g468810 39.667 300 154 11 54 331 4 298 2.46e-44 159
MS.gene64984.t1 MTR_8g468810 39.667 300 154 11 54 331 4 298 4.12e-44 159
MS.gene64984.t1 MTR_4g024710 33.667 300 168 12 214 492 58 347 1.79e-32 127
MS.gene64984.t1 MTR_8g014210 37.218 266 121 12 231 492 8 231 3.62e-32 123
MS.gene64984.t1 MTR_1g041245 30.046 436 229 18 73 492 11 386 3.59e-31 124
MS.gene64984.t1 MTR_8g467800 41.071 280 137 11 73 331 20 292 1.29e-30 122
MS.gene64984.t1 MTR_7g115270 27.982 436 247 13 73 489 12 399 4.29e-29 119
MS.gene64984.t1 MTR_5g008950 27.918 437 224 17 75 492 1 365 1.35e-28 117
MS.gene64984.t1 MTR_7g026500 26.984 441 240 17 73 491 14 394 6.42e-28 115
MS.gene64984.t1 MTR_7g056433 28.474 439 256 14 62 492 1 389 9.27e-28 115
MS.gene64984.t1 MTR_8g077460 40.940 149 84 4 345 492 230 375 2.05e-27 113
MS.gene64984.t1 MTR_8g077460 37.736 212 113 10 65 263 2 207 5.55e-21 95.1
MS.gene64984.t1 MTR_5g084070 27.397 438 273 16 72 489 12 424 7.45e-26 110
MS.gene64984.t1 MTR_2g008320 27.111 450 246 19 62 492 41 427 8.17e-26 110
MS.gene64984.t1 MTR_5g021550 43.114 167 82 7 53 213 3 162 8.73e-26 103
MS.gene64984.t1 MTR_2g008310 28.046 435 233 19 73 492 2 371 1.78e-25 108
MS.gene64984.t1 MTR_7g098510 27.945 433 248 16 69 492 14 391 2.65e-25 107
MS.gene64984.t1 MTR_5g080710 27.632 456 276 18 61 484 13 446 6.10e-25 107
MS.gene64984.t1 MTR_2g007450 30.283 459 235 24 66 489 9 417 4.02e-24 104
MS.gene64984.t1 MTR_8g014290 40.523 153 78 5 73 214 10 160 4.20e-24 99.0
MS.gene64984.t1 MTR_7g033915 26.457 446 213 18 71 491 9 364 1.19e-22 99.8
MS.gene64984.t1 MTR_7g056447 35.533 197 111 6 66 258 2 186 3.18e-22 97.1
MS.gene64984.t1 MTR_7g056287 28.767 438 224 20 73 491 3 371 3.88e-22 98.2
MS.gene64984.t1 MTR_3g107120 29.412 459 236 21 66 496 2 400 4.14e-22 98.6
MS.gene64984.t1 MTR_7g098480 26.376 436 247 13 69 491 14 388 6.58e-22 99.0
MS.gene64984.t1 MTR_4g024745 33.096 281 157 13 212 471 10 280 9.95e-22 95.5
MS.gene64984.t1 MTR_7g056277 28.767 438 224 19 73 491 259 627 1.37e-21 98.6
MS.gene64984.t1 MTR_7g032380 38.974 195 99 9 73 260 11 192 1.61e-20 93.2
MS.gene64984.t1 MTR_3g082890 27.789 475 264 24 37 492 70 484 1.73e-20 94.7
MS.gene64984.t1 MTR_5g045170 26.966 445 264 17 63 497 4 397 2.32e-20 93.6
MS.gene64984.t1 MTR_1g108820 27.045 440 244 19 68 489 3 383 3.39e-20 92.8
MS.gene64984.t1 MTR_7g033990 26.395 466 220 19 49 484 3 375 4.66e-20 92.8
MS.gene64984.t1 MTR_3g099800 52.439 82 38 1 409 489 24 105 1.40e-19 84.3
MS.gene64984.t1 MTR_2g007400 24.670 454 268 19 62 492 1 403 1.65e-19 90.9
MS.gene64984.t1 MTR_7g075820 24.889 450 241 18 73 489 6 391 1.71e-19 90.9
MS.gene64984.t1 MTR_8g085430 37.255 204 97 10 73 260 11 199 2.99e-19 89.4
MS.gene64984.t1 MTR_3g105060 26.761 426 240 20 73 492 14 373 6.85e-19 88.6
MS.gene64984.t1 MTR_3g082890 27.623 467 257 21 69 492 13 441 7.91e-19 89.4
MS.gene64984.t1 MTR_5g058100 25.576 434 259 14 68 491 4 383 1.77e-18 87.8
MS.gene64984.t1 MTR_4g056030 27.412 456 262 17 73 489 9 434 2.14e-18 88.2
MS.gene64984.t1 MTR_3g107100 26.754 456 248 20 64 492 2 398 3.13e-18 87.0
MS.gene64984.t1 MTR_3g099830 23.210 461 231 18 62 489 1 371 4.98e-18 86.3
MS.gene64984.t1 MTR_3g107160 25.747 435 260 14 68 492 2 383 1.00e-17 85.5
MS.gene64984.t1 MTR_4g098590 30.370 405 211 18 75 459 1 354 2.83e-17 84.0
MS.gene64984.t1 MTR_5g073420 33.945 218 121 12 71 275 9 216 3.94e-17 83.6
MS.gene64984.t1 MTR_4g024720 37.879 132 68 4 54 180 5 127 4.35e-17 80.5
MS.gene64984.t1 MTR_7g056430 26.841 421 229 16 73 485 9 358 2.63e-16 82.8
MS.gene64984.t1 MTR_7g056420 26.841 421 229 16 73 485 9 358 2.72e-16 82.8
MS.gene64984.t1 MTR_3g036250 30.570 193 122 6 72 260 4 188 6.80e-16 79.7
MS.gene64984.t1 MTR_2g007500 33.990 203 103 8 66 260 7 186 8.98e-16 79.0
MS.gene64984.t1 MTR_3g467400 29.048 210 121 10 73 264 3 202 1.13e-15 79.0
MS.gene64984.t1 MTR_6g022500 25.455 440 244 19 73 492 101 476 1.26e-15 79.7
MS.gene64984.t1 MTR_7g060470 25.463 432 267 16 73 491 3 392 1.35e-15 79.0
MS.gene64984.t1 MTR_5g008920 34.392 189 103 8 78 260 17 190 1.67e-15 78.6
MS.gene64984.t1 MTR_7g007080 27.416 445 223 21 73 489 4 376 5.01e-15 77.0
MS.gene64984.t1 MTR_4g039440 25.333 450 237 20 72 492 33 412 5.58e-15 77.4
MS.gene64984.t1 MTR_3g040700 29.126 206 126 7 63 260 33 226 6.08e-15 77.4
MS.gene64984.t1 MTR_3g108150 32.990 194 111 8 71 260 11 189 9.34e-15 76.3
MS.gene64984.t1 MTR_7g033945 36.416 173 95 9 71 238 9 171 1.03e-14 72.8
MS.gene64984.t1 MTR_5g045510 28.212 397 206 18 73 459 12 339 1.16e-14 75.9
MS.gene64984.t1 MTR_6g011460 25.602 457 255 21 58 492 28 421 1.29e-14 76.3
MS.gene64984.t1 MTR_5g083890 24.368 435 245 18 73 474 6 389 1.57e-14 76.3
MS.gene64984.t1 MTR_4g056020 31.863 204 117 6 66 259 2 193 1.89e-14 75.9
MS.gene64984.t1 MTR_7g055943 31.000 200 115 8 69 259 36 221 2.30e-14 75.5
MS.gene64984.t1 MTR_8g014230 46.914 81 41 2 402 482 17 95 5.51e-14 68.6
MS.gene64984.t1 MTR_2g005990 30.348 201 130 4 71 262 4 203 6.82e-14 73.9
MS.gene64984.t1 MTR_2g082880 26.897 435 249 22 65 462 2 404 1.08e-13 73.2
MS.gene64984.t1 MTR_7g098570 29.412 221 128 8 47 260 1 200 1.12e-13 73.6
MS.gene64984.t1 MTR_7g034110 33.668 199 110 10 71 260 9 194 1.42e-13 72.4
MS.gene64984.t1 MTR_7g033940 47.500 80 37 3 75 153 96 171 3.25e-13 69.3
MS.gene64984.t1 MTR_3g023630 31.795 195 117 9 70 259 5 188 3.99e-13 71.2
MS.gene64984.t1 MTR_4g093690 29.817 218 125 9 73 276 18 221 1.11e-12 68.9
MS.gene64984.t1 MTR_7g032370 35.714 182 98 9 85 260 2 170 1.70e-12 69.3
MS.gene64984.t1 MTR_1089s0010 31.250 176 100 7 69 238 4 164 1.73e-12 69.3
MS.gene64984.t1 MTR_6g022360 31.250 192 104 7 73 259 43 211 2.33e-12 68.9
MS.gene64984.t1 MTR_6g044560 28.017 232 137 8 56 261 161 388 2.58e-12 69.7
MS.gene64984.t1 MTR_4g024770 53.846 52 23 1 67 118 18 68 3.89e-12 62.4
MS.gene64984.t1 MTR_4g080787 23.380 432 269 14 73 460 19 432 7.41e-12 67.8
MS.gene64984.t1 MTR_7g034115 32.000 200 108 8 73 261 11 193 9.34e-12 67.0
MS.gene64984.t1 MTR_1g108820 30.256 195 120 7 73 264 8 189 1.68e-11 66.2
MS.gene64984.t1 MTR_3g110010 32.292 192 112 8 73 260 13 190 2.48e-11 66.6
MS.gene64984.t1 MTR_7g114710 34.343 198 104 12 73 260 13 194 2.70e-11 65.5
MS.gene64984.t1 MTR_5g031970 27.354 223 129 8 63 276 6 204 2.96e-11 65.5
MS.gene64984.t1 MTR_6g044572 29.302 215 122 8 73 261 2 212 3.16e-11 65.5
MS.gene64984.t1 MTR_3g109982 32.292 192 112 8 73 260 13 190 3.48e-11 66.2
MS.gene64984.t1 MTR_3g048290 24.766 428 265 16 73 460 23 433 5.42e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64984.t1 AT4G13985 25.053 475 281 21 63 489 9 456 3.42e-22 99.8
MS.gene64984.t1 AT1G78760 25.164 457 291 19 67 493 10 445 8.33e-22 98.6
MS.gene64984.t1 AT4G10400 27.209 430 279 15 73 491 2 408 1.19e-21 97.4
MS.gene64984.t1 AT4G10400 27.209 430 279 15 73 491 2 408 1.19e-21 97.4
MS.gene64984.t1 AT4G10400 27.209 430 279 15 73 491 2 408 1.19e-21 97.4
MS.gene64984.t1 AT1G66290 25.105 478 277 22 56 489 10 450 1.32e-19 91.7
MS.gene64984.t1 AT4G00315 35.602 191 113 7 73 259 2 186 3.36e-19 90.5
MS.gene64984.t1 AT4G09920 31.250 208 123 8 73 269 2 200 6.31e-19 87.4
MS.gene64984.t1 AT4G09920 31.250 208 123 8 73 269 2 200 6.31e-19 87.4
MS.gene64984.t1 AT4G09920 31.250 208 123 8 73 269 2 200 6.31e-19 87.4
MS.gene64984.t1 AT5G56440 26.696 457 268 17 73 491 2 429 7.66e-19 89.4
MS.gene64984.t1 AT4G09920 31.250 208 123 8 73 269 2 200 9.50e-19 87.4
MS.gene64984.t1 AT4G09920 31.250 208 123 8 73 269 2 200 9.50e-19 87.4
MS.gene64984.t1 AT5G56420 26.364 440 281 20 73 492 6 422 1.31e-18 88.6
MS.gene64984.t1 AT5G56420 26.364 440 281 20 73 492 6 422 1.31e-18 88.6
MS.gene64984.t1 AT5G56420 26.364 440 281 20 73 492 6 422 1.31e-18 88.6
MS.gene64984.t1 AT1G69630 34.146 205 111 8 66 261 11 200 3.42e-18 87.4
MS.gene64984.t1 AT3G52680 27.333 450 282 17 71 494 19 449 5.00e-18 87.0
MS.gene64984.t1 AT3G26922 33.684 190 112 6 73 259 14 192 1.94e-17 83.6
MS.gene64984.t1 AT3G26922 33.684 190 112 6 73 259 14 192 1.94e-17 83.6
MS.gene64984.t1 AT4G26350 24.224 483 247 18 73 492 2 428 2.26e-17 84.7
MS.gene64984.t1 AT4G26340 24.609 447 281 15 73 492 2 419 2.41e-17 84.7
MS.gene64984.t1 AT4G00160 26.711 453 275 19 71 491 14 441 4.03e-17 84.3
MS.gene64984.t1 AT5G60610 26.456 412 245 19 73 456 2 383 4.54e-17 83.6
MS.gene64984.t1 AT5G60610 26.456 412 245 19 73 456 2 383 4.54e-17 83.6
MS.gene64984.t1 AT5G56560 25.740 439 280 15 74 492 6 418 7.66e-17 83.2
MS.gene64984.t1 AT5G56810 27.669 459 267 19 66 489 3 431 9.14e-17 82.8
MS.gene64984.t1 AT5G50270 25.000 444 248 15 73 471 2 405 1.20e-16 82.4
MS.gene64984.t1 AT3G50710 26.432 454 272 19 73 492 2 427 2.01e-16 82.0
MS.gene64984.t1 AT1G55660 33.508 191 117 7 73 259 53 237 2.39e-16 80.9
MS.gene64984.t1 AT1G16930 33.673 196 112 8 71 261 13 195 3.24e-16 81.3
MS.gene64984.t1 AT1G16930 33.673 196 112 8 71 261 13 195 3.24e-16 81.3
MS.gene64984.t1 AT1G16930 33.673 196 112 8 71 261 13 195 3.24e-16 81.3
MS.gene64984.t1 AT1G55660 33.508 191 117 7 73 259 53 237 5.77e-16 80.9
MS.gene64984.t1 AT3G52680 30.962 239 143 8 71 298 19 246 7.72e-16 79.3
MS.gene64984.t1 AT1G78750 30.244 205 128 7 66 262 11 208 8.49e-16 80.1
MS.gene64984.t1 AT1G78750 30.244 205 128 7 66 262 11 208 8.49e-16 80.1
MS.gene64984.t1 AT2G04230 33.333 201 119 5 73 266 13 205 9.65e-16 79.7
MS.gene64984.t1 AT1G13780 23.950 476 284 18 66 489 3 452 2.19e-15 79.0
MS.gene64984.t1 AT5G44980 25.991 454 277 20 73 491 4 433 4.49e-15 77.8
MS.gene64984.t1 AT5G44980 25.991 454 277 20 73 491 4 433 4.49e-15 77.8
MS.gene64984.t1 AT1G66310 26.030 461 273 22 65 489 11 439 4.93e-15 77.8
MS.gene64984.t1 AT3G59190 30.000 210 112 8 69 259 8 201 5.42e-15 77.0
MS.gene64984.t1 AT4G00320 31.429 210 113 10 70 259 10 208 5.68e-15 77.8
MS.gene64984.t1 AT3G59190 29.032 217 119 8 62 259 1 201 7.99e-15 77.4
MS.gene64984.t1 AT1G51370 25.721 451 264 19 73 489 19 432 8.96e-15 76.6
MS.gene64984.t1 AT4G15060 28.636 220 145 7 44 259 144 355 1.99e-14 76.3
MS.gene64984.t1 AT5G56400 25.110 454 279 20 71 492 31 455 2.25e-14 75.9
MS.gene64984.t1 AT2G26030 23.128 454 298 14 73 489 4 443 4.22e-14 74.7
MS.gene64984.t1 AT5G56690 30.846 201 122 7 75 267 4 195 4.77e-14 74.3
MS.gene64984.t1 AT5G53640 29.661 236 126 11 56 276 3 213 6.39e-14 71.6
MS.gene64984.t1 AT5G41840 30.493 223 119 11 57 259 4 210 8.63e-14 74.3
MS.gene64984.t1 AT5G18780 25.000 452 286 18 70 489 8 438 1.63e-13 72.8
MS.gene64984.t1 AT5G18780 25.000 452 286 18 70 489 8 438 1.63e-13 72.8
MS.gene64984.t1 AT5G56370 24.945 453 272 18 73 491 2 420 1.83e-13 72.8
MS.gene64984.t1 AT5G56370 24.945 453 272 18 73 491 2 420 1.83e-13 72.8
MS.gene64984.t1 AT5G41830 27.597 308 178 13 70 352 10 297 2.26e-13 72.8
MS.gene64984.t1 AT5G56820 25.885 452 259 18 72 489 14 423 4.94e-13 71.2
MS.gene64984.t1 AT2G26860 34.158 202 105 10 73 261 2 188 8.31e-13 70.5
MS.gene64984.t1 AT2G26860 34.158 202 105 10 73 261 2 188 8.31e-13 70.5
MS.gene64984.t1 AT5G50270 31.658 199 123 5 73 267 2 191 9.01e-13 69.7
MS.gene64984.t1 AT4G13960 31.282 195 116 5 73 259 2 186 9.94e-13 70.5
MS.gene64984.t1 AT4G13960 31.282 195 116 5 73 259 2 186 9.94e-13 70.5
MS.gene64984.t1 AT1G32375 24.520 469 257 17 73 492 2 422 1.11e-12 70.1
MS.gene64984.t1 AT1G32375 24.520 469 257 17 73 492 2 422 1.11e-12 70.1
MS.gene64984.t1 AT2G26030 22.976 457 290 15 73 489 4 438 1.40e-12 70.1
MS.gene64984.t1 AT2G26030 22.976 457 290 15 73 489 4 438 1.40e-12 70.1
MS.gene64984.t1 AT3G26922 32.184 174 104 6 89 259 1 163 4.54e-12 67.0
MS.gene64984.t1 AT3G26922 32.184 174 104 6 89 259 1 163 4.54e-12 67.0
MS.gene64984.t1 AT5G22720 28.505 214 130 8 55 259 4 203 5.30e-12 68.2
MS.gene64984.t1 AT5G41630 27.184 309 155 15 70 324 9 301 5.59e-12 68.2
MS.gene64984.t1 AT3G59230 27.950 483 268 25 70 490 9 473 5.71e-12 68.2
MS.gene64984.t1 AT1G60400 28.431 204 117 8 70 261 11 197 5.83e-12 67.8
MS.gene64984.t1 AT5G53840 31.884 207 123 8 59 261 3 195 8.58e-12 67.4
MS.gene64984.t1 AT5G22670 30.516 213 126 8 71 278 9 204 9.35e-12 67.4
MS.gene64984.t1 AT3G26922 30.729 192 94 6 73 261 14 169 9.40e-12 66.2
MS.gene64984.t1 AT4G14096 29.187 209 124 7 69 269 4 196 1.09e-11 67.4
MS.gene64984.t1 AT4G14096 29.187 209 124 7 69 269 4 196 1.09e-11 67.4
MS.gene64984.t1 AT5G18770 23.414 457 291 15 71 488 22 458 1.19e-11 67.4
MS.gene64984.t1 AT3G58940 29.577 213 113 9 73 262 2 200 1.32e-11 67.4
MS.gene64984.t1 AT3G58940 29.577 213 113 9 73 262 2 200 1.32e-11 67.4
MS.gene64984.t1 AT1G80470 29.798 198 117 7 72 261 14 197 1.69e-11 66.6
MS.gene64984.t1 AT1G05080 31.156 199 125 6 64 259 4 193 2.05e-11 66.2
MS.gene64984.t1 AT3G26930 33.166 199 112 9 64 259 12 192 2.51e-11 66.2
MS.gene64984.t1 AT3G59170 31.050 219 111 11 73 259 7 217 2.87e-11 65.9
MS.gene64984.t1 AT3G44810 31.884 207 112 8 71 261 5 198 3.74e-11 65.5
MS.gene64984.t1 AT5G38390 33.831 201 106 10 73 268 2 180 3.99e-11 65.5
MS.gene64984.t1 AT5G56380 32.195 205 115 9 73 264 2 195 6.04e-11 65.1
MS.gene64984.t1 AT5G56380 32.195 205 115 9 73 264 2 195 6.04e-11 65.1
MS.gene64984.t1 AT5G38590 24.533 428 276 15 73 479 2 403 6.18e-11 64.7
MS.gene64984.t1 AT1G49610 27.358 212 98 8 52 263 12 167 7.33e-11 64.3
MS.gene64984.t1 AT1G55030 25.806 403 245 16 72 450 18 390 7.71e-11 64.7
MS.gene64984.t1 AT1G13780 30.837 227 119 12 71 278 8 215 7.94e-11 63.9
MS.gene64984.t1 AT1G55030 25.806 403 245 16 72 450 8 380 8.69e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCCAAGTTTATCAAAT+TGG 0.186934 8.4:-39553796 MS.gene64984:CDS
TGAACTTTATATGATCTAAT+TGG 0.226546 8.4:+39553477 None:intergenic
TGATCTAATTGGCGAAATTC+TGG 0.273531 8.4:+39553488 None:intergenic
CTCGCAGGTGGCGCAATCTT+TGG 0.274446 8.4:-39554498 MS.gene64984:CDS
TTTGCGGAATGGACTTGTTT+TGG 0.284975 8.4:-39553036 MS.gene64984:CDS
CGACAGGTTGGGTGGTTTAC+CGG 0.307553 8.4:-39554590 MS.gene64984:CDS
GACCCGATTCTTTACCTCTT+TGG 0.312262 8.4:-39553699 MS.gene64984:CDS
GCCGCGGCGGCGGCGACGAC+GGG 0.317092 8.4:-39554619 MS.gene64984:CDS
ATATCCTTCTATCTGAATAA+AGG 0.317462 8.4:+39553097 None:intergenic
CACTTCTGATTGTCAATTCA+TGG 0.317831 8.4:-39554341 MS.gene64984:CDS
GACCCAGCTGTATCTTCTTA+AGG 0.322964 8.4:-39552903 None:intergenic
GTACAGATTATGAAAGGTTT+AGG 0.324846 8.4:-39554429 MS.gene64984:CDS
AATTCCAAGTTTATCAAATT+GGG 0.342863 8.4:-39553795 MS.gene64984:CDS
AGCATGTGTGGCCGCGGCGG+CGG 0.348990 8.4:-39554629 MS.gene64984:CDS
TTGTCTTGTCCACTCTTTGT+CGG 0.350959 8.4:-39554813 MS.gene64984:CDS
CTAACCTTTATTCAGATAGA+AGG 0.361488 8.4:-39553101 MS.gene64984:CDS
GCGGCGGCGGCGACGACGGG+AGG 0.362905 8.4:-39554616 MS.gene64984:CDS
ACAGAACAATACTTATTTGT+TGG 0.364080 8.4:+39552978 None:intergenic
ATGTGGATCTGTGCCGCCAC+TGG 0.377713 8.4:-39554292 MS.gene64984:CDS
CAGAACAATACTTATTTGTT+GGG 0.386148 8.4:+39552979 None:intergenic
GGCCGCGGCGGCGGCGACGA+CGG 0.388855 8.4:-39554620 MS.gene64984:CDS
CAATCTTTGGAAACATGTTC+AGG 0.397281 8.4:-39554485 MS.gene64984:CDS
TCAGAAGTTTCCTTTCTCTC+TGG 0.403176 8.4:-39553939 MS.gene64984:CDS
CTGGCACTTGGCAGAGCCCC+TGG 0.408718 8.4:+39552935 None:intergenic
CAGCTGGGTCAAATCTAATC+TGG 0.416399 8.4:+39552916 None:intergenic
GTTGCTGCAGTTCATCAATA+AGG 0.430718 8.4:+39554201 None:intergenic
TATTTATGTCGATGCTTCAA+TGG 0.432122 8.4:-39553003 MS.gene64984:CDS
TCTCTCTGGCTGCCCCATGC+TGG 0.439355 8.4:-39553925 MS.gene64984:CDS
TCTGAATGTCGCGGGATTTG+CGG 0.443962 8.4:+39554380 None:intergenic
AGGTGGGATTTGAGACATCT+AGG 0.445260 8.4:+39553122 None:intergenic
CTCCACCACGAGGTTCTTGA+TGG 0.446386 8.4:-39554777 MS.gene64984:intron
TGAAAACACTGTAGTCTTGA+CGG 0.447443 8.4:-39554044 MS.gene64984:intron
CTTCTATCTGAATAAAGGTT+AGG 0.449348 8.4:+39553102 None:intergenic
TCACCTTAAGAAGATACAGC+TGG 0.453968 8.4:+39552900 None:intergenic
CATGGGGCAGCCAGAGAGAA+AGG 0.456904 8.4:+39553929 None:intergenic
TCTTCGTGTTGATATTGACT+TGG 0.456993 8.4:+39554657 None:intergenic
ACGGGAGGCACCGACAGGTT+GGG 0.458167 8.4:-39554601 MS.gene64984:CDS
ATCTCTAGAGTTTCCAGCAT+GGG 0.460856 8.4:+39553912 None:intergenic
ACGATTTGATCAGCATATGA+TGG 0.461191 8.4:+39554238 None:intergenic
GATACCCAATTTGATAAACT+TGG 0.471060 8.4:+39553791 None:intergenic
TCCCGTCGTCGCCGCCGCCG+CGG 0.473090 8.4:+39554618 None:intergenic
ATTGAGCGACCTCCGTCGTC+TGG 0.473975 8.4:+39554835 None:intergenic
CTTGGGTGTTATCACCGTTA+CGG 0.479510 8.4:+39554675 None:intergenic
CCACCAATCACAATTTCACT+TGG 0.480236 8.4:-39553839 MS.gene64984:CDS
TCTCCAAAGAGGTAAAGAAT+CGG 0.481364 8.4:+39553696 None:intergenic
ATGCTGGAAACTCTAGAGAT+TGG 0.482827 8.4:-39553909 MS.gene64984:CDS
ATTCAGATAGAAGGATATCA+AGG 0.483465 8.4:-39553092 MS.gene64984:CDS
CAGCTTTCATAGTATGTTGG+AGG 0.484738 8.4:-39553763 MS.gene64984:CDS
AAAGATTGCTTGAAATTCCC+AGG 0.485706 8.4:-39552953 MS.gene64984:CDS
CTCCAAAGAGGTAAAGAATC+GGG 0.488312 8.4:+39553697 None:intergenic
TTTGGAGATTACAAAGATGA+TGG 0.494501 8.4:-39553681 MS.gene64984:CDS
TTTATCAAATTGGGTATCGT+TGG 0.494998 8.4:-39553786 MS.gene64984:CDS
GTGAGTCTTGTGCAGAAGAA+AGG 0.499929 8.4:+39554857 None:intergenic
CCAAGTGAAATTGTGATTGG+TGG 0.503838 8.4:+39553839 None:intergenic
TGGCAGCTTTCATAGTATGT+TGG 0.513421 8.4:-39553766 MS.gene64984:CDS
TTGAAGGTGGGGCCCAGTGG+CGG 0.515970 8.4:+39554279 None:intergenic
ATGTGGCACAATATAGAATC+CGG 0.519900 8.4:+39554571 None:intergenic
TGATGAGAGATAGTTCTTGA+AGG 0.519968 8.4:+39554263 None:intergenic
GAATGTCGCGGGATTTGCGG+AGG 0.523251 8.4:+39554383 None:intergenic
AATTCTGGATAATCTAGTAC+AGG 0.523274 8.4:+39553503 None:intergenic
TGGCCACAGAGGTTCTCGTT+GGG 0.525043 8.4:+39554536 None:intergenic
ACAGAAAGCATGTGTGGCCG+CGG 0.526773 8.4:-39554635 MS.gene64984:CDS
GAAATATTCACTTTCATGCA+AGG 0.529118 8.4:+39553722 None:intergenic
TGTGGATCTGTGCCGCCACT+GGG 0.529362 8.4:-39554291 MS.gene64984:CDS
ACTTCTGATTGTCAATTCAT+GGG 0.531540 8.4:-39554340 MS.gene64984:CDS
TCAAGGATGTGAAGATGAGT+TGG 0.532835 8.4:-39553075 MS.gene64984:CDS
CGACGACGGGAGGCACCGAC+AGG 0.538122 8.4:-39554606 MS.gene64984:CDS
CAATGAGTCTTGTCTCTCGC+AGG 0.540337 8.4:-39554513 MS.gene64984:CDS
GAGAGATAGTTCTTGAAGGT+GGG 0.540373 8.4:+39554267 None:intergenic
GTGGCCACAGAGGTTCTCGT+TGG 0.542007 8.4:+39554535 None:intergenic
TGACGGTGCAATCGAGGTGG+AGG 0.543209 8.4:-39554027 MS.gene64984:CDS
CTTCGTGTTGATATTGACTT+GGG 0.543597 8.4:+39554658 None:intergenic
TGGCACTTGGCAGAGCCCCT+GGG 0.544115 8.4:+39552936 None:intergenic
CACCTTAAGAAGATACAGCT+GGG 0.545919 8.4:+39552901 None:intergenic
GGAGGCACCGACAGGTTGGG+TGG 0.553228 8.4:-39554598 MS.gene64984:CDS
TCGCTCAAGAGGCTGAGACT+TGG 0.554777 8.4:-39553978 MS.gene64984:CDS
ACTCCAAGTGAAATTGTGAT+TGG 0.559448 8.4:+39553836 None:intergenic
CTATCTGAATAAAGGTTAGG+TGG 0.559892 8.4:+39553105 None:intergenic
AACCTCGTAACTTCAGTCAA+AGG 0.561117 8.4:+39553867 None:intergenic
ACACTCACTGTTAAGAACAT+TGG 0.567730 8.4:-39553165 MS.gene64984:CDS
TTGGGAGAAATGAAAGGATG+TGG 0.569705 8.4:+39554554 None:intergenic
ATGGAACTTCTGAATGTCGC+GGG 0.570738 8.4:+39554372 None:intergenic
TTCTTGAAGGTGGGGCCCAG+TGG 0.571044 8.4:+39554276 None:intergenic
AGTCTCAGCCTCTTGAGCGA+TGG 0.571312 8.4:+39553981 None:intergenic
AAAACAACTATGTTGAAATG+TGG 0.574343 8.4:-39554309 MS.gene64984:CDS
CATCTTTGTAATCTCCAAAG+AGG 0.576100 8.4:+39553685 None:intergenic
AGAAGATTCGACTTGAAGCA+AGG 0.576967 8.4:+39553449 None:intergenic
AGAGATAGTTCTTGAAGGTG+GGG 0.577979 8.4:+39554268 None:intergenic
GTCAAATCTAATCTGGCACT+TGG 0.581058 8.4:+39552923 None:intergenic
TGAGAGATAGTTCTTGAAGG+TGG 0.582174 8.4:+39554266 None:intergenic
ACGGTGGCACCGACAAAGAG+TGG 0.585985 8.4:+39554804 None:intergenic
GCAGCAACCTCGTTTCCCTA+AGG 0.587406 8.4:-39554186 MS.gene64984:intron
GACGGGAGGCACCGACAGGT+TGG 0.588911 8.4:-39554602 MS.gene64984:CDS
AAGATTGCTTGAAATTCCCA+GGG 0.594934 8.4:-39552952 MS.gene64984:CDS
TATCTGAATAAAGGTTAGGT+GGG 0.596842 8.4:+39553106 None:intergenic
CTGCAGTTCATCAATAAGGA+AGG 0.599461 8.4:+39554205 None:intergenic
GTGTAAGTACAGATTATGAA+AGG 0.600910 8.4:-39554435 MS.gene64984:CDS
GAAGATTCGACTTGAAGCAA+GGG 0.601784 8.4:+39553450 None:intergenic
AATCAGAAGTGATAGTGAGA+TGG 0.604985 8.4:+39554353 None:intergenic
TGAGTCTTGTCTCTCGCAGG+TGG 0.605268 8.4:-39554510 MS.gene64984:CDS
ATTCTGGATAATCTAGTACA+GGG 0.610554 8.4:+39553504 None:intergenic
TAGTCTTGACGGTGCAATCG+AGG 0.611321 8.4:-39554033 MS.gene64984:CDS
TTCTCGTTGGGAGAAATGAA+AGG 0.613003 8.4:+39554548 None:intergenic
GAAAGCATGTGTGGCCGCGG+CGG 0.636853 8.4:-39554632 MS.gene64984:CDS
AATGTCGCGGGATTTGCGGA+GGG 0.643744 8.4:+39554384 None:intergenic
GATGGAACTTCTGAATGTCG+CGG 0.645532 8.4:+39554371 None:intergenic
GGAGATTACAAAGATGATGG+CGG 0.648241 8.4:-39553678 MS.gene64984:CDS
TTCTGGATAATCTAGTACAG+GGG 0.649920 8.4:+39553505 None:intergenic
TACCTTTGACTGAAGTTACG+AGG 0.650580 8.4:-39553869 MS.gene64984:CDS
TCTCATAATTCAGAGCGACA+AGG 0.650946 8.4:-39553390 MS.gene64984:intron
CTAGGAACTGTTATTGACTG+TGG 0.654479 8.4:+39553140 None:intergenic
CGGTAAACCACCCAACCTGT+CGG 0.656358 8.4:+39554591 None:intergenic
TCTTGACGGTGCAATCGAGG+TGG 0.656879 8.4:-39554030 MS.gene64984:CDS
TCTCTAGAGTTTCCAGCATG+GGG 0.662773 8.4:+39553913 None:intergenic
GATGTGTCACTCGACATCAA+AGG 0.666423 8.4:-39553637 MS.gene64984:intron
GCGAGAGACAAGACTCATTG+TGG 0.668031 8.4:+39554516 None:intergenic
AATCTCTAGAGTTTCCAGCA+TGG 0.669247 8.4:+39553911 None:intergenic
ACGAAGACAGAAAGCATGTG+TGG 0.671424 8.4:-39554641 MS.gene64984:CDS
GAAGTTACCTTAGGGAAACG+AGG 0.680454 8.4:+39554179 None:intergenic
GCACAAGACTCACCAGACGA+CGG 0.688567 8.4:-39554847 MS.gene64984:CDS
CACCGTAAAACTCCACCACG+AGG 0.695448 8.4:-39554787 MS.gene64984:CDS
AATTGTTGGAGTTACCGTAA+CGG 0.695753 8.4:-39554689 MS.gene64984:intron
CACCATCAAGAACCTCGTGG+TGG 0.696550 8.4:+39554775 None:intergenic
TCTCCCAACGAGAACCTCTG+TGG 0.700098 8.4:-39554539 MS.gene64984:CDS
AAGACTCATTGTGGCCACAG+AGG 0.700325 8.4:+39554525 None:intergenic
CAAGACTCACCAGACGACGG+AGG 0.730339 8.4:-39554844 MS.gene64984:CDS
AGATTGCTTGAAATTCCCAG+GGG 0.770008 8.4:-39552951 MS.gene64984:CDS
CAACACCATCAAGAACCTCG+TGG 0.795549 8.4:+39554772 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTAATTGAATCAAATATT+TGG - chr8.4:39554435-39554454 MS.gene64984:CDS 15.0%
!! AAATTCCAAGTTTATCAAAT+TGG - chr8.4:39553991-39554010 MS.gene64984:CDS 20.0%
!! AATTCCAAGTTTATCAAATT+GGG - chr8.4:39553992-39554011 MS.gene64984:CDS 20.0%
!! TACAAACATATTTACTTACT+TGG - chr8.4:39553658-39553677 MS.gene64984:CDS 20.0%
!! TGAACTTTATATGATCTAAT+TGG + chr8.4:39554313-39554332 None:intergenic 20.0%
!!! CAAATATATTTTTTGAGTCA+CGG - chr8.4:39554575-39554594 MS.gene64984:CDS 20.0%
! AAAACAACTATGTTGAAATG+TGG - chr8.4:39553478-39553497 MS.gene64984:CDS 25.0%
! ACAGAACAATACTTATTTGT+TGG + chr8.4:39554812-39554831 None:intergenic 25.0%
! ATATCCTTCTATCTGAATAA+AGG + chr8.4:39554693-39554712 None:intergenic 25.0%
! CAGAACAATACTTATTTGTT+GGG + chr8.4:39554811-39554830 None:intergenic 25.0%
! CTTTAAATGAAGTTACCTTA+GGG + chr8.4:39553619-39553638 None:intergenic 25.0%
! TACGTGATAAAAACAAGTAA+TGG + chr8.4:39554242-39554261 None:intergenic 25.0%
!! AAGAAAGGAACTATGTTTTA+TGG + chr8.4:39552918-39552937 None:intergenic 25.0%
!!! AAGGTGGAGTTTTATTATTA+TGG - chr8.4:39554169-39554188 MS.gene64984:intron 25.0%
!!! ATTGATTTGTAACCAATTGT+TGG - chr8.4:39553084-39553103 MS.gene64984:CDS 25.0%
!!! CATTTGCTGAATATATTTTG+CGG - chr8.4:39554735-39554754 MS.gene64984:intron 25.0%
!!! TTATGAAAGGTTTAGGTTTT+TGG - chr8.4:39553365-39553384 MS.gene64984:intron 25.0%
AATTCTGGATAATCTAGTAC+AGG + chr8.4:39554287-39554306 None:intergenic 30.0%
ACTTCTGATTGTCAATTCAT+GGG - chr8.4:39553447-39553466 MS.gene64984:CDS 30.0%
ATTCAGATAGAAGGATATCA+AGG - chr8.4:39554695-39554714 MS.gene64984:intron 30.0%
ATTCTGGATAATCTAGTACA+GGG + chr8.4:39554286-39554305 None:intergenic 30.0%
CTAACCTTTATTCAGATAGA+AGG - chr8.4:39554686-39554705 MS.gene64984:intron 30.0%
CTTCTATCTGAATAAAGGTT+AGG + chr8.4:39554688-39554707 None:intergenic 30.0%
GAAATATTCACTTTCATGCA+AGG + chr8.4:39554068-39554087 None:intergenic 30.0%
GATACCCAATTTGATAAACT+TGG + chr8.4:39553999-39554018 None:intergenic 30.0%
GTACAGATTATGAAAGGTTT+AGG - chr8.4:39553358-39553377 MS.gene64984:intron 30.0%
GTGTAAGTACAGATTATGAA+AGG - chr8.4:39553352-39553371 MS.gene64984:intron 30.0%
TATCTGAATAAAGGTTAGGT+GGG + chr8.4:39554684-39554703 None:intergenic 30.0%
TATTTATGTCGATGCTTCAA+TGG - chr8.4:39554784-39554803 MS.gene64984:CDS 30.0%
TTTGGAGATTACAAAGATGA+TGG - chr8.4:39554106-39554125 MS.gene64984:intron 30.0%
! GCTTTAAATGAAGTTACCTT+AGG + chr8.4:39553620-39553639 None:intergenic 30.0%
! TTTATCAAATTGGGTATCGT+TGG - chr8.4:39554001-39554020 MS.gene64984:CDS 30.0%
AAAGATTGCTTGAAATTCCC+AGG - chr8.4:39554834-39554853 MS.gene64984:CDS 35.0%
AAGATTGCTTGAAATTCCCA+GGG - chr8.4:39554835-39554854 MS.gene64984:CDS 35.0%
AATTGTTGGAGTTACCGTAA+CGG - chr8.4:39553098-39553117 MS.gene64984:CDS 35.0%
ACACTCACTGTTAAGAACAT+TGG - chr8.4:39554622-39554641 MS.gene64984:CDS 35.0%
ACGATTTGATCAGCATATGA+TGG + chr8.4:39553552-39553571 None:intergenic 35.0%
ACTCCAAGTGAAATTGTGAT+TGG + chr8.4:39553954-39553973 None:intergenic 35.0%
ATGTGGCACAATATAGAATC+CGG + chr8.4:39553219-39553238 None:intergenic 35.0%
CACTTCTGATTGTCAATTCA+TGG - chr8.4:39553446-39553465 MS.gene64984:CDS 35.0%
CATCTTTGTAATCTCCAAAG+AGG + chr8.4:39554105-39554124 None:intergenic 35.0%
CTATCTGAATAAAGGTTAGG+TGG + chr8.4:39554685-39554704 None:intergenic 35.0%
TCTCCAAAGAGGTAAAGAAT+CGG + chr8.4:39554094-39554113 None:intergenic 35.0%
TGATCTAATTGGCGAAATTC+TGG + chr8.4:39554302-39554321 None:intergenic 35.0%
TGATGAGAGATAGTTCTTGA+AGG + chr8.4:39553527-39553546 None:intergenic 35.0%
TTCTGGATAATCTAGTACAG+GGG + chr8.4:39554285-39554304 None:intergenic 35.0%
! AATCAGAAGTGATAGTGAGA+TGG + chr8.4:39553437-39553456 None:intergenic 35.0%
! CAATCTTTGGAAACATGTTC+AGG - chr8.4:39553302-39553321 MS.gene64984:intron 35.0%
! GCTGAATATATTTTGCGGAA+TGG - chr8.4:39554740-39554759 MS.gene64984:intron 35.0%
! TCTTCGTGTTGATATTGACT+TGG + chr8.4:39553133-39553152 None:intergenic 35.0%
! TGAAAACACTGTAGTCTTGA+CGG - chr8.4:39553743-39553762 MS.gene64984:CDS 35.0%
! TTTTTATCACGTACAAGCAG+TGG - chr8.4:39554249-39554268 MS.gene64984:CDS 35.0%
!! CTTCGTGTTGATATTGACTT+GGG + chr8.4:39553132-39553151 None:intergenic 35.0%
!! TTTATTTTCCATCGCTCAAG+AGG - chr8.4:39553798-39553817 MS.gene64984:CDS 35.0%
AACCTCGTAACTTCAGTCAA+AGG + chr8.4:39553923-39553942 None:intergenic 40.0%
AGAGATAGTTCTTGAAGGTG+GGG + chr8.4:39553522-39553541 None:intergenic 40.0%
AGATTGCTTGAAATTCCCAG+GGG - chr8.4:39554836-39554855 MS.gene64984:CDS 40.0%
CAGCTTTCATAGTATGTTGG+AGG - chr8.4:39554024-39554043 MS.gene64984:CDS 40.0%
CCAAGTGAAATTGTGATTGG+TGG + chr8.4:39553951-39553970 None:intergenic 40.0%
CCACCAATCACAATTTCACT+TGG - chr8.4:39553948-39553967 MS.gene64984:CDS 40.0%
CTCCAAAGAGGTAAAGAATC+GGG + chr8.4:39554093-39554112 None:intergenic 40.0%
CTGCAGTTCATCAATAAGGA+AGG + chr8.4:39553585-39553604 None:intergenic 40.0%
GAGAGATAGTTCTTGAAGGT+GGG + chr8.4:39553523-39553542 None:intergenic 40.0%
GTCAAATCTAATCTGGCACT+TGG + chr8.4:39554867-39554886 None:intergenic 40.0%
GTTACGGTAACTCCAACAAT+TGG + chr8.4:39553099-39553118 None:intergenic 40.0%
GTTCCTCCTATTAGCAACAA+GGG + chr8.4:39554604-39554623 None:intergenic 40.0%
GTTGCTGCAGTTCATCAATA+AGG + chr8.4:39553589-39553608 None:intergenic 40.0%
TACCTTTGACTGAAGTTACG+AGG - chr8.4:39553918-39553937 MS.gene64984:CDS 40.0%
TCAAGGATGTGAAGATGAGT+TGG - chr8.4:39554712-39554731 MS.gene64984:intron 40.0%
TCAGAAGTTTCCTTTCTCTC+TGG - chr8.4:39553848-39553867 MS.gene64984:CDS 40.0%
TCTCATAATTCAGAGCGACA+AGG - chr8.4:39554397-39554416 MS.gene64984:CDS 40.0%
TGAGAGATAGTTCTTGAAGG+TGG + chr8.4:39553524-39553543 None:intergenic 40.0%
TGGCAGCTTTCATAGTATGT+TGG - chr8.4:39554021-39554040 MS.gene64984:CDS 40.0%
TGTTCCTCCTATTAGCAACA+AGG + chr8.4:39554605-39554624 None:intergenic 40.0%
TTCTCGTTGGGAGAAATGAA+AGG + chr8.4:39553242-39553261 None:intergenic 40.0%
TTGGGAGAAATGAAAGGATG+TGG + chr8.4:39553236-39553255 None:intergenic 40.0%
TTGTCTTGTCCACTCTTTGT+CGG - chr8.4:39552974-39552993 MS.gene64984:CDS 40.0%
! AGAAGATTCGACTTGAAGCA+AGG + chr8.4:39554341-39554360 None:intergenic 40.0%
! ATGCTGGAAACTCTAGAGAT+TGG - chr8.4:39553878-39553897 MS.gene64984:CDS 40.0%
! CTAGGAACTGTTATTGACTG+TGG + chr8.4:39554650-39554669 None:intergenic 40.0%
! GAAGATTCGACTTGAAGCAA+GGG + chr8.4:39554340-39554359 None:intergenic 40.0%
! GGAGATTACAAAGATGATGG+CGG - chr8.4:39554109-39554128 MS.gene64984:intron 40.0%
!! AATCTCTAGAGTTTCCAGCA+TGG + chr8.4:39553879-39553898 None:intergenic 40.0%
!! ATCTCTAGAGTTTCCAGCAT+GGG + chr8.4:39553878-39553897 None:intergenic 40.0%
!! TTCTTGATGGTGTTGTGACT+TGG - chr8.4:39553023-39553042 MS.gene64984:CDS 40.0%
!! TTTGCGGAATGGACTTGTTT+TGG - chr8.4:39554751-39554770 MS.gene64984:intron 40.0%
ATGGAACTTCTGAATGTCGC+GGG + chr8.4:39553418-39553437 None:intergenic 45.0%
CAGCTGGGTCAAATCTAATC+TGG + chr8.4:39554874-39554893 None:intergenic 45.0%
GAAGTTACCTTAGGGAAACG+AGG + chr8.4:39553611-39553630 None:intergenic 45.0%
GACCCGATTCTTTACCTCTT+TGG - chr8.4:39554088-39554107 MS.gene64984:intron 45.0%
GATGGAACTTCTGAATGTCG+CGG + chr8.4:39553419-39553438 None:intergenic 45.0%
TGTCCCTTGTTGCTAATAGG+AGG - chr8.4:39554598-39554617 MS.gene64984:CDS 45.0%
! ACGAAGACAGAAAGCATGTG+TGG - chr8.4:39553146-39553165 MS.gene64984:CDS 45.0%
! AGGTGGGATTTGAGACATCT+AGG + chr8.4:39554668-39554687 None:intergenic 45.0%
! CTTGGGTGTTATCACCGTTA+CGG + chr8.4:39553115-39553134 None:intergenic 45.0%
! GATGTGTCACTCGACATCAA+AGG - chr8.4:39554150-39554169 MS.gene64984:intron 45.0%
! GTGAGTCTTGTGCAGAAGAA+AGG + chr8.4:39552933-39552952 None:intergenic 45.0%
!! AACCTCGTGGTGGAGTTTTA+CGG + chr8.4:39553005-39553024 None:intergenic 45.0%
!! TCTCTAGAGTTTCCAGCATG+GGG + chr8.4:39553877-39553896 None:intergenic 45.0%
AAGACTCATTGTGGCCACAG+AGG + chr8.4:39553265-39553284 None:intergenic 50.0%
CAACACCATCAAGAACCTCG+TGG + chr8.4:39553018-39553037 None:intergenic 50.0%
CGGTGTCCCTTGTTGCTAAT+AGG - chr8.4:39554595-39554614 MS.gene64984:CDS 50.0%
GCGAGAGACAAGACTCATTG+TGG + chr8.4:39553274-39553293 None:intergenic 50.0%
TCTGAATGTCGCGGGATTTG+CGG + chr8.4:39553410-39553429 None:intergenic 50.0%
! CAATGAGTCTTGTCTCTCGC+AGG - chr8.4:39553274-39553293 MS.gene64984:intron 50.0%
! GTGTCACTCGACATCAAAGG+TGG - chr8.4:39554153-39554172 MS.gene64984:intron 50.0%
! TAGTCTTGACGGTGCAATCG+AGG - chr8.4:39553754-39553773 MS.gene64984:CDS 50.0%
!!! GCGGAATGGACTTGTTTTGG+AGG - chr8.4:39554754-39554773 MS.gene64984:intron 50.0%
AATGTCGCGGGATTTGCGGA+GGG + chr8.4:39553406-39553425 None:intergenic 55.0%
AGTCTCAGCCTCTTGAGCGA+TGG + chr8.4:39553809-39553828 None:intergenic 55.0%
CACCATCAAGAACCTCGTGG+TGG + chr8.4:39553015-39553034 None:intergenic 55.0%
CACCGTAAAACTCCACCACG+AGG - chr8.4:39553000-39553019 MS.gene64984:CDS 55.0%
CGGTAAACCACCCAACCTGT+CGG + chr8.4:39553199-39553218 None:intergenic 55.0%
CTCCACCACGAGGTTCTTGA+TGG - chr8.4:39553010-39553029 MS.gene64984:CDS 55.0%
GCACAAGACTCACCAGACGA+CGG - chr8.4:39552940-39552959 MS.gene64984:CDS 55.0%
GCAGCAACCTCGTTTCCCTA+AGG - chr8.4:39553601-39553620 MS.gene64984:intron 55.0%
TCGCTCAAGAGGCTGAGACT+TGG - chr8.4:39553809-39553828 MS.gene64984:CDS 55.0%
TCTCCCAACGAGAACCTCTG+TGG - chr8.4:39553248-39553267 MS.gene64984:intron 55.0%
TCTTGACGGTGCAATCGAGG+TGG - chr8.4:39553757-39553776 MS.gene64984:CDS 55.0%
TGGCCACAGAGGTTCTCGTT+GGG + chr8.4:39553254-39553273 None:intergenic 55.0%
! ACAGAAAGCATGTGTGGCCG+CGG - chr8.4:39553152-39553171 MS.gene64984:CDS 55.0%
! CGACAGGTTGGGTGGTTTAC+CGG - chr8.4:39553197-39553216 MS.gene64984:intron 55.0%
! TGAGTCTTGTCTCTCGCAGG+TGG - chr8.4:39553277-39553296 MS.gene64984:intron 55.0%
!! CTCGTGGTGGAGTTTTACGG+TGG + chr8.4:39553002-39553021 None:intergenic 55.0%
ATGTGGATCTGTGCCGCCAC+TGG - chr8.4:39553495-39553514 MS.gene64984:CDS 60.0%
ATTGAGCGACCTCCGTCGTC+TGG + chr8.4:39552955-39552974 None:intergenic 60.0%
CAAGACTCACCAGACGACGG+AGG - chr8.4:39552943-39552962 MS.gene64984:CDS 60.0%
CATGGGGCAGCCAGAGAGAA+AGG + chr8.4:39553861-39553880 None:intergenic 60.0%
CTCGCAGGTGGCGCAATCTT+TGG - chr8.4:39553289-39553308 MS.gene64984:intron 60.0%
GAATGTCGCGGGATTTGCGG+AGG + chr8.4:39553407-39553426 None:intergenic 60.0%
GTGGCCACAGAGGTTCTCGT+TGG + chr8.4:39553255-39553274 None:intergenic 60.0%
TGACGGTGCAATCGAGGTGG+AGG - chr8.4:39553760-39553779 MS.gene64984:CDS 60.0%
TGTGGATCTGTGCCGCCACT+GGG - chr8.4:39553496-39553515 MS.gene64984:CDS 60.0%
TTCTTGAAGGTGGGGCCCAG+TGG + chr8.4:39553514-39553533 None:intergenic 60.0%
!! ACGGTGGCACCGACAAAGAG+TGG + chr8.4:39552986-39553005 None:intergenic 60.0%
TCTCTCTGGCTGCCCCATGC+TGG - chr8.4:39553862-39553881 MS.gene64984:CDS 65.0%
TGGCACTTGGCAGAGCCCCT+GGG + chr8.4:39554854-39554873 None:intergenic 65.0%
TTGAAGGTGGGGCCCAGTGG+CGG + chr8.4:39553511-39553530 None:intergenic 65.0%
! GAAAGCATGTGTGGCCGCGG+CGG - chr8.4:39553155-39553174 MS.gene64984:CDS 65.0%
!! ACGGGAGGCACCGACAGGTT+GGG - chr8.4:39553186-39553205 MS.gene64984:intron 65.0%
CTGGCACTTGGCAGAGCCCC+TGG + chr8.4:39554855-39554874 None:intergenic 70.0%
!! GACGGGAGGCACCGACAGGT+TGG - chr8.4:39553185-39553204 MS.gene64984:intron 70.0%
!! GGAGGCACCGACAGGTTGGG+TGG - chr8.4:39553189-39553208 MS.gene64984:intron 70.0%
AGCATGTGTGGCCGCGGCGG+CGG - chr8.4:39553158-39553177 MS.gene64984:CDS 75.0%
!! CGACGACGGGAGGCACCGAC+AGG - chr8.4:39553181-39553200 MS.gene64984:intron 75.0%
! TCCCGTCGTCGCCGCCGCCG+CGG + chr8.4:39553172-39553191 None:intergenic 85.0%
! GCCGCGGCGGCGGCGACGAC+GGG - chr8.4:39553168-39553187 MS.gene64984:CDS 90.0%
! GCGGCGGCGGCGACGACGGG+AGG - chr8.4:39553171-39553190 MS.gene64984:CDS 90.0%
! GGCCGCGGCGGCGGCGACGA+CGG - chr8.4:39553167-39553186 MS.gene64984:CDS 90.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 39552905 39554904 39552905 ID=MS.gene64984
chr8.4 mRNA 39552905 39554904 39552905 ID=MS.gene64984.t1;Parent=MS.gene64984
chr8.4 exon 39554778 39554904 39554778 ID=MS.gene64984.t1.exon1;Parent=MS.gene64984.t1
chr8.4 CDS 39554778 39554904 39554778 ID=cds.MS.gene64984.t1;Parent=MS.gene64984.t1
chr8.4 exon 39554187 39554700 39554187 ID=MS.gene64984.t1.exon2;Parent=MS.gene64984.t1
chr8.4 CDS 39554187 39554700 39554187 ID=cds.MS.gene64984.t1;Parent=MS.gene64984.t1
chr8.4 exon 39553638 39554052 39553638 ID=MS.gene64984.t1.exon3;Parent=MS.gene64984.t1
chr8.4 CDS 39553638 39554052 39553638 ID=cds.MS.gene64984.t1;Parent=MS.gene64984.t1
chr8.4 exon 39553391 39553540 39553391 ID=MS.gene64984.t1.exon4;Parent=MS.gene64984.t1
chr8.4 CDS 39553391 39553540 39553391 ID=cds.MS.gene64984.t1;Parent=MS.gene64984.t1
chr8.4 exon 39552905 39553192 39552905 ID=MS.gene64984.t1.exon5;Parent=MS.gene64984.t1
chr8.4 CDS 39552905 39553192 39552905 ID=cds.MS.gene64984.t1;Parent=MS.gene64984.t1
Gene Sequence

>MS.gene64984

ATGATATCGACCATAAAACATAGTTCCTTTCTTCTGCACAAGACTCACCAGACGACGGAGGTCGCTCAATTGTCTTGTCCACTCTTTGTCGGTGCCACCGTAAAACTCCACCACGAGGTTCTTGATGGTGTTGTGACTTGGAGTTATAAATGTATTGAATTGTAATGAAGCATATGACTATTGATTTGTAACCAATTGTTGGAGTTACCGTAACGGTGATAACACCCAAGTCAATATCAACACGAAGACAGAAAGCATGTGTGGCCGCGGCGGCGGCGACGACGGGAGGCACCGACAGGTTGGGTGGTTTACCGGATTCTATATTGTGCCACATCCTTTCATTTCTCCCAACGAGAACCTCTGTGGCCACAATGAGTCTTGTCTCTCGCAGGTGGCGCAATCTTTGGAAACATGTTCAGGTCTTTGACTTCGACTTCAACTGCGACTGTGTAAGTACAGATTATGAAAGGTTTAGGTTTTTGGTTAACTCTGTGCTTGCCCTCCGCAAATCCCGCGACATTCAGAAGTTCCATCTCACTATCACTTCTGATTGTCAATTCATGGGCAACATTCAAAACAACTATGTTGAAATGTGGATCTGTGCCGCCACTGGGCCCCACCTTCAAGAACTATCTCTCATCATTCCATCATATGCTGATCAAATCGTAAAACTCTCTCCTTCCTTATTGATGAACTGCAGCAACCTCGTTTCCCTAAGGTAACTTCATTTAAAGCTATCAACATACAACATGTTACAAACATATTTACTTACTTGGTATTTATAGAATTTCTAATGTGTAAACAAATATACAATGTTATTTATGACATCTATGTCTTTTGAAAACACTGTAGTCTTGACGGTGCAATCGAGGTGGAGGTTAAACATTCTTCAGTTTATTTTCCATCGCTCAAGAGGCTGAGACTTGGTGAACTCATTGTAGATTCAGAAGTTTCCTTTCTCTCTGGCTGCCCCATGCTGGAAACTCTAGAGATTGGCTTTTACTTAAATAACATACCTTTGACTGAAGTTACGAGGTTGAAATCCACCAATCACAATTTCACTTGGAGTTACTTTGAGTTTTATGTAAATTCCAAGTTTATCAAATTGGGTATCGTTGGCAGCTTTCATAGTATGTTGGAGGCATTTCTTTATGTCTTTTCCTTGCATGAAAGTGAATATTTCGACCCGATTCTTTACCTCTTTGGAGATTACAAAGATGATGGCGGCGATTATGTTCATCTAAAGATGTGTCACTCGACATCAAAGGTGGAGTTTTATTATTATGGTTTATATGTATTCAATTTCATATATGCAGTTTTGTACTGATATTATGCCATTACTTGTTTTTATCACGTACAAGCAGTGGACACTTCATGCCCCTGTACTAGATTATCCAGAATTTCGCCAATTAGATCATATAAAGTTCAATCTCCCTTGCTTCAAGTCGAATCTTCTTGTCACTGTGCTCAATAAATGTCATATGCTTAAATTTCTCATAATTCAGAGCGACAAGGTTTGTTGACTTTCAACTTTAATTGAATCAAATATTTGGTTTGTCTATGTATGTATGCATGTATTTATCTATATTTGTTGACTTTTAAACTTTAATTGAATCAAATATTTGGTTTGTCTATGTATGTATGCATGTATATATCTATATATACACAATCAAATATATTTTTTGAGTCACGGTGTCCCTTGTTGCTAATAGGAGGAACACTCACTGTTAAGAACATTGGAGCCACAGTCAATAACAGTTCCTAGATGTCTCAAATCCCACCTAACCTTTATTCAGATAGAAGGATATCAAGGATGTGAAGATGAGTTGGCATTTGCTGAATATATTTTGCGGAATGGACTTGTTTTGGAGGCGATGCTTATTTATGTCGATGCTTCAATGGACCCAACAAATAAGTATTGTTCTGTCAAAAGATTGCTTGAAATTCCCAGGGGCTCTGCCAAGTGCCAGATTAGATTTGACCCAGCTGTATCTTCTTAA

Protein sequence

>MS.gene64984.t1

MISTIKHSSFLLHKTHQTTEVAQLSCPLFVGATVKLHHEVLDVTVTVITPKSISTRRQKACVAAAAATTGGTDRLGGLPDSILCHILSFLPTRTSVATMSLVSRRWRNLWKHVQVFDFDFNCDCVSTDYERFRFLVNSVLALRKSRDIQKFHLTITSDCQFMGNIQNNYVEMWICAATGPHLQELSLIIPSYADQIVKLSPSLLMNCSNLVSLSLDGAIEVEVKHSSVYFPSLKRLRLGELIVDSEVSFLSGCPMLETLEIGFYLNNIPLTEVTRLKSTNHNFTWSYFEFYVNSKFIKLGIVGSFHSMLEAFLYVFSLHESEYFDPILYLFGDYKDDGGDYVHLKMCHSTSKWTLHAPVLDYPEFRQLDHIKFNLPCFKSNLLVTVLNKCHMLKFLIIQSDKEEHSLLRTLEPQSITVPRCLKSHLTFIQIEGYQGCEDELAFAEYILRNGLVLEAMLIYVDASMDPTNKYCSVKRLLEIPRGSAKCQIRFDPAVSS