AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065516


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065516.t1 MTR_5g092960 84.979 486 42 2 1 479 1 462 0.0 778
MS.gene065516.t1 MTR_5g092960 84.596 396 30 2 1 389 1 372 0.0 613
MS.gene065516.t1 MTR_8g062270 60.768 469 150 6 16 478 13 453 0.0 538
MS.gene065516.t1 MTR_8g468840 62.284 464 145 8 19 479 14 450 0.0 514
MS.gene065516.t1 MTR_8g468760 56.962 474 136 11 14 478 4 418 7.63e-163 467
MS.gene065516.t1 MTR_8g467800 53.862 479 180 8 7 478 8 452 3.55e-159 459
MS.gene065516.t1 MTR_4g032730 50.199 502 188 9 5 479 1 467 2.58e-151 439
MS.gene065516.t1 MTR_2g083840 50.959 469 188 9 19 478 21 456 1.79e-134 396
MS.gene065516.t1 MTR_8g468810 46.951 492 205 14 4 478 10 462 2.63e-130 385
MS.gene065516.t1 MTR_8g058970 48.394 498 189 14 14 478 14 476 3.14e-130 386
MS.gene065516.t1 MTR_8g468810 47.103 397 165 11 4 389 10 372 5.25e-103 313
MS.gene065516.t1 MTR_8g014260 43.644 472 217 16 19 478 16 450 1.14e-99 307
MS.gene065516.t1 MTR_8g467800 51.190 336 126 7 7 338 8 309 4.47e-94 289
MS.gene065516.t1 MTR_8g468810 48.338 331 134 8 4 330 10 307 1.83e-90 279
MS.gene065516.t1 MTR_8g468810 48.640 331 133 8 4 330 10 307 2.73e-90 278
MS.gene065516.t1 MTR_8g468810 48.338 331 134 8 4 330 10 307 4.11e-90 279
MS.gene065516.t1 MTR_8g469020 39.875 479 234 11 19 478 7 450 4.54e-90 282
MS.gene065516.t1 MTR_8g445780 42.431 436 196 15 5 433 1 388 9.69e-87 271
MS.gene065516.t1 MTR_8g058965 40.204 490 238 13 8 478 2 455 8.76e-85 268
MS.gene065516.t1 MTR_8g070950 38.557 485 235 15 5 478 1 433 7.34e-79 253
MS.gene065516.t1 MTR_8g062310 35.941 473 236 12 11 478 17 427 2.48e-71 233
MS.gene065516.t1 MTR_4g050250 38.584 438 217 11 10 426 12 418 7.36e-71 231
MS.gene065516.t1 MTR_8g062010 36.034 469 243 11 19 478 9 429 1.61e-70 231
MS.gene065516.t1 MTR_8g062080 35.967 481 232 15 17 478 21 444 3.09e-70 230
MS.gene065516.t1 MTR_8g062300 33.066 499 273 13 6 478 13 476 7.01e-60 204
MS.gene065516.t1 MTR_8g014210 50.218 229 104 5 253 478 9 230 3.12e-58 192
MS.gene065516.t1 MTR_4g024710 43.243 296 148 11 191 478 63 346 1.72e-56 191
MS.gene065516.t1 MTR_4g024745 42.294 279 141 11 189 460 15 280 3.52e-46 162
MS.gene065516.t1 MTR_8g014160 40.000 345 161 14 2 338 32 338 4.14e-46 166
MS.gene065516.t1 MTR_8g014160 44.595 74 39 1 407 478 351 424 9.52e-12 67.0
MS.gene065516.t1 MTR_8g467790 32.692 416 200 15 18 424 147 491 1.60e-42 158
MS.gene065516.t1 MTR_8g077460 37.548 261 123 10 9 262 2 229 3.71e-34 132
MS.gene065516.t1 MTR_8g077460 37.963 216 117 8 270 478 169 374 6.58e-28 114
MS.gene065516.t1 MTR_5g021550 47.097 155 73 6 12 161 12 162 3.07e-33 124
MS.gene065516.t1 MTR_5g084070 29.828 466 263 18 15 471 9 419 4.32e-31 125
MS.gene065516.t1 MTR_5g080710 29.828 466 264 20 18 471 32 446 4.33e-31 125
MS.gene065516.t1 MTR_8g014290 44.079 152 74 6 19 161 10 159 5.48e-29 112
MS.gene065516.t1 MTR_2g007450 26.556 482 264 14 12 476 9 417 6.39e-29 118
MS.gene065516.t1 MTR_6g022500 26.216 473 244 15 14 476 96 473 2.28e-27 114
MS.gene065516.t1 MTR_1089s0010 26.722 479 236 15 14 479 3 379 7.69e-27 112
MS.gene065516.t1 MTR_4g024720 39.791 191 87 8 6 172 4 190 1.54e-26 107
MS.gene065516.t1 MTR_3g107100 26.708 483 247 15 11 476 3 395 2.42e-25 108
MS.gene065516.t1 MTR_7g026500 25.678 479 239 18 19 478 14 394 7.93e-25 106
MS.gene065516.t1 MTR_2g008320 25.451 499 239 21 2 476 35 424 1.99e-24 105
MS.gene065516.t1 MTR_1g041245 25.373 469 249 17 18 478 10 385 1.40e-23 102
MS.gene065516.t1 MTR_7g098510 25.261 479 235 19 18 478 17 390 4.71e-23 101
MS.gene065516.t1 MTR_2g008310 25.000 476 232 18 18 476 1 368 5.30e-23 100
MS.gene065516.t1 MTR_3g108560 25.800 469 239 18 19 478 20 388 5.72e-23 100
MS.gene065516.t1 MTR_0543s0010 26.483 472 231 16 17 478 84 449 6.43e-23 101
MS.gene065516.t1 MTR_4g039440 25.101 494 250 18 4 478 19 411 1.86e-22 99.8
MS.gene065516.t1 MTR_3g108150 26.471 476 232 16 19 478 13 386 4.33e-22 98.2
MS.gene065516.t1 MTR_3g107160 25.413 484 238 17 11 476 2 380 9.30e-22 97.4
MS.gene065516.t1 MTR_3g071850 25.974 462 251 18 18 471 23 401 1.64e-21 98.6
MS.gene065516.t1 MTR_7g032380 25.322 466 223 17 18 478 10 355 2.42e-21 95.5
MS.gene065516.t1 MTR_5g039950 27.009 448 240 18 16 453 20 390 2.46e-21 96.3
MS.gene065516.t1 MTR_6g040270 26.598 485 225 20 14 476 3 378 3.18e-21 95.5
MS.gene065516.t1 MTR_3g107120 25.000 472 248 16 19 476 9 388 3.99e-21 95.5
MS.gene065516.t1 MTR_6g011460 24.950 497 243 20 6 478 30 420 4.95e-21 95.5
MS.gene065516.t1 MTR_2g086020 37.017 181 102 5 304 478 140 314 5.19e-21 94.0
MS.gene065516.t1 MTR_2g086020 40.164 122 56 4 47 162 3 113 2.61e-13 71.2
MS.gene065516.t1 MTR_4g056040 26.869 495 260 20 15 457 5 449 5.98e-21 95.9
MS.gene065516.t1 MTR_1g108820 27.044 477 230 22 18 476 7 383 6.83e-21 94.7
MS.gene065516.t1 MTR_0492s0020 26.471 442 212 15 17 451 84 419 1.26e-20 94.4
MS.gene065516.t1 MTR_2g007400 25.794 504 238 21 5 476 1 400 1.37e-20 94.0
MS.gene065516.t1 MTR_1g085120 25.745 470 248 16 19 478 92 470 1.68e-20 94.4
MS.gene065516.t1 MTR_1g085120 26.004 473 243 18 19 478 167 545 2.60e-20 94.4
MS.gene065516.t1 MTR_4g098590 26.712 438 226 15 23 450 3 355 5.53e-20 92.0
MS.gene065516.t1 MTR_6g045333 23.679 473 262 17 18 478 60 445 5.98e-20 92.4
MS.gene065516.t1 MTR_8g014220 31.602 231 82 8 2 231 5 160 8.95e-20 86.7
MS.gene065516.t1 MTR_4g056070 26.891 476 248 21 15 434 5 436 1.62e-19 91.3
MS.gene065516.t1 MTR_1g066830 26.360 478 237 21 18 478 7 386 2.30e-19 90.1
MS.gene065516.t1 MTR_5g007410 24.947 469 248 19 21 476 28 405 3.14e-19 90.5
MS.gene065516.t1 MTR_5g058000 26.371 474 230 17 18 478 7 374 6.10e-19 89.0
MS.gene065516.t1 MTR_3g087260 26.036 507 266 15 19 478 12 456 6.19e-19 89.7
MS.gene065516.t1 MTR_4g056020 27.232 448 256 19 15 441 5 403 9.42e-19 89.0
MS.gene065516.t1 MTR_0009s0080 25.764 458 241 14 21 469 20 387 1.14e-18 88.6
MS.gene065516.t1 MTR_5g008920 24.066 482 249 19 10 478 3 380 2.22e-18 87.4
MS.gene065516.t1 MTR_4g056030 27.742 465 254 21 12 449 2 411 7.55e-18 86.3
MS.gene065516.t1 MTR_1g038710 26.932 453 265 16 19 449 19 427 2.04e-17 84.7
MS.gene065516.t1 MTR_4g055990 23.887 494 288 17 15 457 5 461 5.12e-17 84.0
MS.gene065516.t1 MTR_4g055990 24.089 494 287 16 15 457 5 461 5.69e-17 84.0
MS.gene065516.t1 MTR_3g048290 26.210 496 284 17 15 478 19 464 6.17e-17 83.6
MS.gene065516.t1 MTR_1g107385 25.641 507 255 20 5 476 1 420 1.86e-16 81.6
MS.gene065516.t1 MTR_3g109982 26.033 484 255 17 19 451 13 444 1.99e-16 82.8
MS.gene065516.t1 MTR_5g058100 28.986 276 150 12 231 478 126 383 2.04e-16 81.3
MS.gene065516.t1 MTR_5g073370 24.545 440 232 15 16 449 2 347 2.94e-16 80.9
MS.gene065516.t1 MTR_8g085430 27.915 283 148 10 18 294 10 242 6.84e-16 79.0
MS.gene065516.t1 MTR_4g113810 35.567 194 93 9 104 292 2 168 8.99e-16 75.5
MS.gene065516.t1 MTR_7g115270 25.370 473 253 21 19 476 12 399 3.62e-15 77.8
MS.gene065516.t1 MTR_7g034115 26.637 443 217 17 18 451 10 353 5.63e-15 77.0
MS.gene065516.t1 MTR_7g056433 31.489 235 121 10 9 240 2 199 2.73e-14 74.7
MS.gene065516.t1 MTR_7g033990 31.304 230 107 10 18 238 10 197 2.84e-14 75.1
MS.gene065516.t1 MTR_1g108820 29.658 263 124 11 18 262 7 226 4.80e-14 73.9
MS.gene065516.t1 MTR_2g072720 25.670 448 268 17 19 447 39 440 9.30e-14 73.6
MS.gene065516.t1 MTR_2g007500 29.646 226 106 6 17 238 12 188 1.68e-13 72.0
MS.gene065516.t1 MTR_2g005990 28.448 232 124 7 17 238 4 203 1.88e-13 72.4
MS.gene065516.t1 MTR_4g080787 26.263 297 187 10 201 478 180 463 2.21e-13 72.4
MS.gene065516.t1 MTR_3g040700 23.131 428 220 14 19 441 43 366 2.81e-13 72.0
MS.gene065516.t1 MTR_7g039630 32.487 197 118 5 201 382 140 336 4.82e-13 70.5
MS.gene065516.t1 MTR_1g108800 24.681 470 206 17 18 476 7 339 7.63e-13 70.1
MS.gene065516.t1 MTR_7g056447 29.817 218 109 9 19 233 9 185 9.89e-13 68.9
MS.gene065516.t1 MTR_4g024770 47.059 68 33 2 3 68 6 72 2.68e-12 62.8
MS.gene065516.t1 MTR_6g044560 29.960 247 136 10 4 237 166 388 3.85e-12 68.9
MS.gene065516.t1 MTR_4g055580 26.884 491 255 24 15 449 96 538 3.98e-12 68.9
MS.gene065516.t1 MTR_8g014230 44.444 81 42 2 389 467 14 93 7.34e-12 62.4
MS.gene065516.t1 MTR_4g045900 22.594 478 302 17 18 449 25 480 9.73e-12 67.4
MS.gene065516.t1 MTR_2g007090 27.004 237 126 8 266 479 82 294 1.66e-11 65.5
MS.gene065516.t1 MTR_6g044572 30.472 233 128 9 18 237 1 212 1.74e-11 66.2
MS.gene065516.t1 MTR_7g034120 34.351 131 76 6 351 478 184 307 2.20e-11 65.1
MS.gene065516.t1 MTR_5g087940 27.875 287 164 11 19 305 26 269 2.35e-11 65.9
MS.gene065516.t1 MTR_4g080590 26.621 293 193 11 201 479 168 452 2.40e-11 66.2
MS.gene065516.t1 MTR_5g008950 26.255 259 160 10 239 478 118 364 3.74e-11 65.1
MS.gene065516.t1 MTR_7g083740 32.394 142 81 3 344 478 233 366 3.78e-11 65.1
MS.gene065516.t1 MTR_7g098570 28.030 264 156 10 239 475 133 389 4.77e-11 65.1
MS.gene065516.t1 MTR_7g056280 32.278 158 92 4 330 476 417 570 5.62e-11 65.1
MS.gene065516.t1 MTR_3g036250 26.724 232 153 7 256 476 138 363 8.08e-11 63.9
MS.gene065516.t1 MTR_1377s0010 34.862 109 63 3 343 449 25 127 9.08e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065516.t1 AT1G16930 28.279 488 264 20 19 476 15 446 3.77e-32 128
MS.gene065516.t1 AT1G16930 28.279 488 264 20 19 476 15 446 3.77e-32 128
MS.gene065516.t1 AT1G16930 28.279 488 264 20 19 476 15 446 3.77e-32 128
MS.gene065516.t1 AT5G53635 26.526 475 281 14 21 478 2 425 8.47e-31 124
MS.gene065516.t1 AT4G26340 28.092 477 268 20 18 478 1 418 1.91e-30 122
MS.gene065516.t1 AT5G53840 26.392 485 293 18 8 479 7 440 5.50e-30 122
MS.gene065516.t1 AT4G00160 29.583 480 268 23 17 478 14 441 1.29e-29 121
MS.gene065516.t1 AT5G56440 27.801 482 263 19 18 474 1 422 1.03e-28 118
MS.gene065516.t1 AT5G56420 25.630 476 278 17 19 478 6 421 1.28e-28 117
MS.gene065516.t1 AT5G56420 25.630 476 278 17 19 478 6 421 1.28e-28 117
MS.gene065516.t1 AT5G56420 25.630 476 278 17 19 478 6 421 1.28e-28 117
MS.gene065516.t1 AT1G13780 26.220 492 284 16 17 476 8 452 6.95e-28 116
MS.gene065516.t1 AT5G44950 27.642 492 266 22 17 476 2 435 1.10e-27 115
MS.gene065516.t1 AT5G60610 28.090 445 248 17 18 449 1 386 1.51e-27 114
MS.gene065516.t1 AT5G60610 28.090 445 248 17 18 449 1 386 1.51e-27 114
MS.gene065516.t1 AT4G13965 30.704 469 256 20 19 476 10 420 2.62e-27 114
MS.gene065516.t1 AT1G51370 26.596 470 277 17 19 476 19 432 4.17e-27 113
MS.gene065516.t1 AT5G22730 27.112 509 283 23 1 476 10 463 4.88e-27 114
MS.gene065516.t1 AT5G22730 27.112 509 283 23 1 476 10 463 4.88e-27 114
MS.gene065516.t1 AT4G00315 26.042 480 298 16 18 479 1 441 6.53e-27 113
MS.gene065516.t1 AT2G04230 27.957 465 267 17 19 469 13 423 1.57e-26 112
MS.gene065516.t1 AT1G78750 27.146 501 290 18 5 476 1 455 2.52e-26 111
MS.gene065516.t1 AT1G78750 27.146 501 290 18 5 476 1 455 2.52e-26 111
MS.gene065516.t1 AT2G26030 27.143 490 270 22 19 476 4 438 3.63e-26 110
MS.gene065516.t1 AT2G26030 27.143 490 270 22 19 476 4 438 3.63e-26 110
MS.gene065516.t1 AT1G66310 26.069 491 296 16 1 476 1 439 3.67e-26 110
MS.gene065516.t1 AT5G22660 25.506 494 273 17 17 476 11 443 4.05e-26 110
MS.gene065516.t1 AT5G56560 26.681 476 268 16 20 478 6 417 6.07e-26 110
MS.gene065516.t1 AT5G22700 25.806 465 265 15 19 457 6 416 6.17e-26 110
MS.gene065516.t1 AT5G22700 25.806 465 265 15 19 457 6 416 6.17e-26 110
MS.gene065516.t1 AT5G22700 25.806 465 265 15 19 457 6 416 6.17e-26 110
MS.gene065516.t1 AT5G22700 25.806 465 265 15 19 457 6 416 6.17e-26 110
MS.gene065516.t1 AT2G26030 26.380 489 280 20 19 476 4 443 9.15e-26 109
MS.gene065516.t1 AT5G22700 25.806 465 265 15 19 457 43 453 9.29e-26 110
MS.gene065516.t1 AT5G22610 25.657 495 284 18 19 477 18 464 3.27e-25 108
MS.gene065516.t1 AT1G55660 25.417 480 301 15 18 479 52 492 1.05e-24 107
MS.gene065516.t1 AT5G22670 25.052 479 288 14 19 476 11 439 1.25e-24 106
MS.gene065516.t1 AT5G27750 25.558 493 293 16 17 476 3 454 1.51e-24 106
MS.gene065516.t1 AT3G49030 28.631 482 262 23 19 479 21 441 1.54e-24 106
MS.gene065516.t1 AT1G69630 26.069 491 276 19 16 476 15 448 2.83e-24 105
MS.gene065516.t1 AT5G56820 28.692 474 257 20 19 476 15 423 4.03e-24 104
MS.gene065516.t1 AT5G22610 25.519 482 271 18 19 477 18 434 4.77e-24 105
MS.gene065516.t1 AT5G44980 27.386 482 276 21 19 478 4 433 5.66e-24 104
MS.gene065516.t1 AT5G44980 27.386 482 276 21 19 478 4 433 5.66e-24 104
MS.gene065516.t1 AT1G66300 26.263 495 282 22 8 476 16 453 7.67e-24 104
MS.gene065516.t1 AT5G38570 26.170 470 243 17 18 478 1 375 9.93e-24 103
MS.gene065516.t1 AT3G52680 28.770 504 275 21 1 479 1 445 9.96e-24 103
MS.gene065516.t1 AT5G56400 27.254 477 279 15 17 478 31 454 1.64e-23 103
MS.gene065516.t1 AT5G56380 26.061 495 277 22 18 479 1 439 4.79e-23 101
MS.gene065516.t1 AT5G56380 26.061 495 277 22 18 479 1 439 4.79e-23 101
MS.gene065516.t1 AT1G22000 25.971 489 261 18 20 476 30 449 7.19e-23 101
MS.gene065516.t1 AT1G32375 25.159 473 290 15 18 478 1 421 1.46e-22 100
MS.gene065516.t1 AT1G32375 25.159 473 290 15 18 478 1 421 1.46e-22 100
MS.gene065516.t1 AT1G78760 24.145 497 299 19 1 476 1 440 1.72e-22 100
MS.gene065516.t1 AT2G26860 25.828 453 266 18 18 453 1 400 2.88e-22 99.0
MS.gene065516.t1 AT2G26860 25.828 453 266 18 18 453 1 400 2.88e-22 99.0
MS.gene065516.t1 AT5G22720 25.956 497 276 21 19 478 23 464 5.17e-22 99.0
MS.gene065516.t1 AT5G44960 24.684 474 280 17 19 478 5 415 6.16e-22 98.2
MS.gene065516.t1 AT1G80470 25.203 492 290 21 5 476 1 434 6.96e-22 98.6
MS.gene065516.t1 AT1G51370 25.214 468 264 16 19 476 19 410 1.64e-21 97.1
MS.gene065516.t1 AT3G58980 27.530 494 274 21 18 479 1 442 6.08e-21 96.3
MS.gene065516.t1 AT5G56370 25.620 484 273 17 18 478 1 420 6.23e-21 95.5
MS.gene065516.t1 AT5G56370 25.620 484 273 17 18 478 1 420 6.23e-21 95.5
MS.gene065516.t1 AT5G22700 24.229 454 245 14 19 457 43 412 7.23e-21 95.1
MS.gene065516.t1 AT3G44810 30.636 346 200 10 21 357 9 323 1.30e-20 94.7
MS.gene065516.t1 AT3G58900 25.751 466 269 17 18 449 1 423 1.30e-20 94.7
MS.gene065516.t1 AT3G59200 28.753 393 215 14 19 383 7 362 1.32e-20 93.6
MS.gene065516.t1 AT3G59200 27.419 496 283 19 19 477 7 462 4.34e-20 93.6
MS.gene065516.t1 AT5G56810 27.879 495 273 21 7 478 2 435 7.54e-20 92.0
MS.gene065516.t1 AT5G38590 25.056 443 275 15 18 456 1 390 1.20e-19 91.3
MS.gene065516.t1 AT3G49020 26.834 477 280 18 19 479 22 445 1.28e-19 91.7
MS.gene065516.t1 AT1G78730 24.706 510 253 22 5 476 1 417 1.28e-19 91.3
MS.gene065516.t1 AT4G10420 28.622 283 181 10 201 478 55 321 7.16e-19 87.8
MS.gene065516.t1 AT5G18780 25.625 480 287 17 17 476 9 438 1.05e-18 89.0
MS.gene065516.t1 AT5G18780 25.625 480 287 17 17 476 9 438 1.05e-18 89.0
MS.gene065516.t1 AT3G51530 26.535 456 265 17 4 445 12 411 1.33e-18 88.6
MS.gene065516.t1 AT1G05080 25.000 488 299 18 9 479 2 439 1.36e-18 88.6
MS.gene065516.t1 AT3G26920 30.241 291 173 12 201 478 66 339 1.86e-18 87.0
MS.gene065516.t1 AT3G26920 30.241 291 173 12 201 478 66 339 1.86e-18 87.0
MS.gene065516.t1 AT1G66290 24.746 493 288 23 7 476 18 450 2.11e-18 87.8
MS.gene065516.t1 AT3G42770 25.581 473 286 15 21 477 1 423 3.01e-18 87.8
MS.gene065516.t1 AT5G56700 25.258 388 238 12 73 451 8 352 4.37e-18 86.3
MS.gene065516.t1 AT5G62970 25.451 499 285 21 18 479 1 449 6.54e-18 86.3
MS.gene065516.t1 AT3G59240 26.869 495 279 25 19 477 8 455 1.14e-17 85.9
MS.gene065516.t1 AT3G58860 25.106 470 293 17 14 466 2 429 1.39e-17 85.5
MS.gene065516.t1 AT5G41840 26.185 401 229 14 19 383 14 383 2.47e-17 85.1
MS.gene065516.t1 AT1G16940 24.524 473 275 18 17 476 9 412 2.69e-17 84.3
MS.gene065516.t1 AT5G18770 26.033 484 286 20 17 475 22 458 2.87e-17 84.7
MS.gene065516.t1 AT5G56390 25.106 470 297 15 18 478 1 424 4.53e-17 83.6
MS.gene065516.t1 AT5G56410 26.201 458 264 21 18 449 1 410 5.45e-17 84.0
MS.gene065516.t1 AT3G60040 25.648 386 230 12 19 383 13 362 5.74e-17 84.3
MS.gene065516.t1 AT3G60040 25.648 386 230 12 19 383 232 581 8.85e-17 83.6
MS.gene065516.t1 AT3G60040 25.648 386 230 12 19 383 230 579 8.90e-17 83.6
MS.gene065516.t1 AT3G60040 25.648 386 230 12 19 383 232 581 9.80e-17 83.6
MS.gene065516.t1 AT3G60040 25.648 386 230 12 19 383 233 582 1.02e-16 83.6
MS.gene065516.t1 AT3G58920 25.294 510 291 21 18 479 1 468 1.27e-16 82.4
MS.gene065516.t1 AT5G56560 29.352 293 166 10 203 478 338 606 1.41e-16 82.8
MS.gene065516.t1 AT1G55030 26.899 487 276 23 9 478 8 431 2.91e-16 81.3
MS.gene065516.t1 AT4G09920 24.768 323 192 11 18 334 1 278 3.84e-16 79.7
MS.gene065516.t1 AT4G09920 24.768 323 192 11 18 334 1 278 3.84e-16 79.7
MS.gene065516.t1 AT1G55030 27.101 476 268 21 19 478 9 421 4.26e-16 80.9
MS.gene065516.t1 AT5G22730 27.053 414 222 20 1 383 10 374 4.39e-16 80.5
MS.gene065516.t1 AT5G25850 25.586 512 271 19 18 475 19 474 4.84e-16 80.9
MS.gene065516.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.01e-16 78.6
MS.gene065516.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.01e-16 78.6
MS.gene065516.t1 AT4G09920 24.768 323 192 11 18 334 1 278 6.01e-16 78.6
MS.gene065516.t1 AT3G58900 27.961 304 166 11 18 308 1 264 7.54e-16 79.0
MS.gene065516.t1 AT3G58900 27.961 304 166 11 18 308 1 264 7.54e-16 79.0
MS.gene065516.t1 AT3G58900 27.961 304 166 11 18 308 1 264 8.35e-16 78.6
MS.gene065516.t1 AT3G58880 25.828 453 278 14 18 449 2 417 1.89e-15 79.0
MS.gene065516.t1 AT4G14103 30.847 295 158 14 19 305 8 264 1.91e-15 78.2
MS.gene065516.t1 AT4G14103 30.847 295 158 14 19 305 8 264 1.91e-15 78.2
MS.gene065516.t1 AT2G26030 28.904 301 179 14 201 476 75 365 1.92e-15 78.2
MS.gene065516.t1 AT1G55660 27.778 270 157 9 18 283 52 287 2.26e-15 77.8
MS.gene065516.t1 AT4G14103 30.847 295 158 14 19 305 8 264 2.54e-15 78.6
MS.gene065516.t1 AT3G26922 28.840 319 176 12 19 332 14 286 2.72e-15 77.0
MS.gene065516.t1 AT3G26922 28.840 319 176 12 19 332 14 286 2.72e-15 77.0
MS.gene065516.t1 AT3G26930 27.629 485 265 21 19 479 21 443 4.96e-15 77.4
MS.gene065516.t1 AT3G56780 23.327 523 273 19 21 476 9 470 5.00e-15 77.8
MS.gene065516.t1 AT5G22660 25.575 348 183 10 17 338 11 308 5.24e-15 76.3
MS.gene065516.t1 AT3G58930 23.353 501 312 16 18 478 1 469 1.43e-14 76.3
MS.gene065516.t1 AT3G58930 23.353 501 312 16 18 478 1 469 1.43e-14 76.3
MS.gene065516.t1 AT3G58930 23.353 501 312 16 18 478 1 469 1.43e-14 76.3
MS.gene065516.t1 AT5G38590 25.234 321 190 12 18 334 1 275 1.79e-14 74.3
MS.gene065516.t1 AT5G41830 27.342 395 229 14 15 383 9 371 3.95e-14 75.1
MS.gene065516.t1 AT4G14096 26.633 398 209 17 19 405 8 333 5.50e-14 74.3
MS.gene065516.t1 AT4G14096 26.633 398 209 17 19 405 8 333 5.50e-14 74.3
MS.gene065516.t1 AT3G49480 24.512 461 280 17 19 459 12 424 6.81e-14 73.9
MS.gene065516.t1 AT2G42730 24.375 480 307 18 19 477 5 449 1.01e-13 73.6
MS.gene065516.t1 AT5G56325 25.940 266 174 9 223 478 11 263 2.31e-13 70.5
MS.gene065516.t1 AT5G18770 26.632 383 220 15 17 380 22 362 2.34e-13 72.0
MS.gene065516.t1 AT4G22280 25.000 476 278 21 18 478 1 412 2.49e-13 72.0
MS.gene065516.t1 AT3G26920 28.269 283 150 12 201 478 66 300 4.00e-13 70.5
MS.gene065516.t1 AT4G00320 27.318 399 224 18 15 383 9 371 4.29e-13 71.6
MS.gene065516.t1 AT5G18780 26.000 400 231 15 17 400 9 359 4.54e-13 71.2
MS.gene065516.t1 AT5G18780 26.000 400 231 15 17 400 9 359 4.54e-13 71.2
MS.gene065516.t1 AT5G38390 25.427 468 255 17 18 449 1 410 6.18e-13 71.2
MS.gene065516.t1 AT5G56810 28.472 288 150 11 7 281 2 246 8.38e-13 69.7
MS.gene065516.t1 AT5G44850 23.529 408 222 16 73 476 7 328 1.09e-12 69.3
MS.gene065516.t1 AT5G56800 25.862 290 191 9 198 479 71 344 1.20e-12 69.3
MS.gene065516.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.21e-12 69.7
MS.gene065516.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.21e-12 69.7
MS.gene065516.t1 AT3G54910 24.938 401 248 14 84 478 19 372 1.21e-12 69.7
MS.gene065516.t1 AT5G44980 26.970 330 182 15 19 330 4 292 1.34e-12 68.9
MS.gene065516.t1 AT5G44980 26.970 330 182 15 19 330 4 292 1.34e-12 68.9
MS.gene065516.t1 AT5G35995 24.187 492 299 20 19 478 5 454 1.68e-12 69.7
MS.gene065516.t1 AT5G35995 24.187 492 299 20 19 478 5 454 1.68e-12 69.7
MS.gene065516.t1 AT3G59190 26.974 304 183 10 14 310 7 278 4.36e-12 68.2
MS.gene065516.t1 AT3G59190 27.303 304 182 10 14 310 7 278 4.85e-12 68.6
MS.gene065516.t1 AT5G22600 25.414 362 196 13 148 477 1 320 1.05e-11 66.6
MS.gene065516.t1 AT5G22600 25.414 362 196 13 148 477 1 320 1.05e-11 66.6
MS.gene065516.t1 AT1G56610 28.346 254 142 6 24 275 15 230 1.15e-11 67.0
MS.gene065516.t1 AT3G26930 26.039 457 253 20 47 479 3 398 1.17e-11 67.0
MS.gene065516.t1 AT5G53640 27.232 224 111 7 19 237 22 198 1.30e-11 64.7
MS.gene065516.t1 AT5G41630 27.434 226 127 7 17 235 10 205 1.45e-11 66.6
MS.gene065516.t1 AT1G56610 29.134 254 140 7 24 275 78 293 2.23e-11 66.6
MS.gene065516.t1 AT3G52690 28.041 296 179 13 199 478 20 297 2.32e-11 65.1
MS.gene065516.t1 AT5G56700 27.511 229 130 8 87 310 22 219 4.34e-11 63.9
MS.gene065516.t1 AT4G27050 22.510 502 294 20 19 478 4 452 4.36e-11 65.5
MS.gene065516.t1 AT4G27050 22.510 502 294 20 19 478 4 452 4.36e-11 65.5
MS.gene065516.t1 AT4G27050 22.510 502 294 20 19 478 4 452 4.36e-11 65.5
MS.gene065516.t1 AT4G27050 22.510 502 294 20 19 478 4 452 4.36e-11 65.5
MS.gene065516.t1 AT4G27050 22.510 502 294 20 19 478 4 452 4.36e-11 65.5
MS.gene065516.t1 AT1G48400 29.412 255 133 10 19 263 10 227 9.25e-11 64.3
MS.gene065516.t1 AT1G48400 29.091 275 144 11 19 279 10 247 9.37e-11 64.3

Find 104 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTAGACATGTATAATT+TGG 0.197938 5.2:+78371255 MS.gene065516:CDS
GGTTCAACAGATTCACTTTC+AGG 0.208119 5.2:-78371550 None:intergenic
CTCGCAAATGGCGCAATCTT+TGG 0.272398 5.2:+78370417 MS.gene065516:CDS
TTACCGCCGCCGGCTTCAAC+AGG 0.285165 5.2:+78370690 MS.gene065516:CDS
CGAAGTGTGGCCAAAGATTC+AGG 0.291932 5.2:-78371346 None:intergenic
TAAAGCAAGTGGCGAAATTC+AGG 0.293563 5.2:-78371769 None:intergenic
TGAATCTTTGGCCACACTTC+GGG 0.320102 5.2:+78371348 MS.gene065516:CDS
AAATGGGATACAAGACATTT+AGG 0.331229 5.2:-78372022 None:intergenic
CTGTCCTGTTCTCGAAAATC+TGG 0.345977 5.2:+78371309 MS.gene065516:CDS
ATTCATCACCTTCATATGAA+TGG 0.356856 5.2:+78371978 MS.gene065516:CDS
TGTGGTACGAATGCAGGTTT+TGG 0.357467 5.2:-78370384 None:intergenic
GTCAATCGAGTGGTTATAGA+AGG 0.357684 5.2:-78370612 None:intergenic
GATGAAACTCCTCGAGGTTT+GGG 0.377236 5.2:-78370658 None:intergenic
AGATGAAACTCCTCGAGGTT+TGG 0.379740 5.2:-78370659 None:intergenic
GTTATCGAATTCATAAATTA+CGG 0.385345 5.2:-78370480 None:intergenic
GGAGAGGATGTGATGTAGTA+AGG 0.386148 5.2:-78370351 None:intergenic
GGGCAAGAGAAGAGGGAAAC+AGG 0.388572 5.2:-78370716 None:intergenic
GAAGGTCAATAAAGGTCAAA+TGG 0.393848 5.2:-78372039 None:intergenic
ATGTGATGTAGTAAGGAGTT+TGG 0.398364 5.2:-78370344 None:intergenic
TCCGCAAATCTCGCATTGTT+CGG 0.399549 5.2:+78370552 MS.gene065516:CDS
GACTCTGCCGCCTCCGCCAT+CGG 0.401729 5.2:-78370281 None:intergenic
TCCGAACAATGCGAGATTTG+CGG 0.403727 5.2:-78370553 None:intergenic
ATCGTCAAATTCTCTATCAT+AGG 0.406822 5.2:+78370792 MS.gene065516:CDS
AGCATCACGAAACGTGATAT+TGG 0.407324 5.2:-78371470 None:intergenic
TTGGAAGAATCTCGAAGCCT+TGG 0.421279 5.2:+78370436 MS.gene065516:CDS
CTCCTCGAGGTTTGGGCCAA+TGG 0.421806 5.2:-78370651 None:intergenic
AGTCTTCTCCGAGCTCTCTC+TGG 0.426037 5.2:+78371580 MS.gene065516:CDS
CACCCCTCGTTTCTCGCAAA+TGG 0.426304 5.2:+78370405 MS.gene065516:CDS
TTTCGTGATGCTGCTTCTGT+TGG 0.427729 5.2:+78371481 MS.gene065516:CDS
ACTTGCTTTATATAGAGCTT+TGG 0.428633 5.2:+78371782 MS.gene065516:CDS
TTCATCACCTTCATATGAAT+GGG 0.445404 5.2:+78371979 MS.gene065516:CDS
TTATCGAATTCATAAATTAC+GGG 0.447046 5.2:-78370479 None:intergenic
GGATACTCCGATGGCGGAGG+CGG 0.450270 5.2:+78370274 MS.gene065516:CDS
TGCCTGAGAGAGACAAGGTT+AGG 0.451617 5.2:-78370737 None:intergenic
TCTGCAATTGCAAGACGATT+CGG 0.452828 5.2:+78371201 MS.gene065516:CDS
TTCACTTCCCATTCATATGA+AGG 0.453446 5.2:-78371986 None:intergenic
GTAGTAAGGAGTTTGGTAGT+TGG 0.454541 5.2:-78370337 None:intergenic
ATATTCTCGAAGGTCAATAA+AGG 0.454998 5.2:-78372047 None:intergenic
GCCCTAACCTTGTCTCTCTC+AGG 0.455076 5.2:+78370735 MS.gene065516:CDS
CTGAATCTTTGGCCACACTT+CGG 0.455360 5.2:+78371347 MS.gene065516:CDS
GATCAGGCGCGTCTATTTCA+AGG 0.461395 5.2:-78371429 None:intergenic
ATCAATGTTGAGAATGAGGT+TGG 0.461553 5.2:+78371400 MS.gene065516:CDS
TCTCGGAAATTTAAATGAGC+TGG 0.464659 5.2:+78372069 MS.gene065516:CDS
TTCGTGATGCTGCTTCTGTT+GGG 0.465190 5.2:+78371482 MS.gene065516:CDS
GTTTAATTCCAGAGAGAGCT+CGG 0.466178 5.2:-78371588 None:intergenic
TCAATGTTGAGAATGAGGTT+GGG 0.476409 5.2:+78371401 MS.gene065516:CDS
TGACACGTAGCAGATGCCTT+TGG 0.478856 5.2:-78372199 None:intergenic
AGCAGATGCCTTTGGTAGAT+CGG 0.485724 5.2:-78372191 None:intergenic
TCTGTGAATGTCCTTCTCTC+TGG 0.486132 5.2:+78371286 MS.gene065516:CDS
ATTGACCTTCGAGAATATCT+CGG 0.492718 5.2:+78372052 MS.gene065516:CDS
CACCCTGTTGAAGCCGGCGG+CGG 0.502744 5.2:-78370693 None:intergenic
CAATGTTGAGAATGAGGTTG+GGG 0.505466 5.2:+78371402 MS.gene065516:CDS
AACAGGCACCCTGTTGAAGC+CGG 0.507985 5.2:-78370699 None:intergenic
AAGGTCAATAAAGGTCAAAT+GGG 0.512953 5.2:-78372038 None:intergenic
TCTGTCAATGCCGTCATCGT+CGG 0.514873 5.2:-78370309 None:intergenic
GTTATGAGAGTTTGTAGCAC+AGG 0.517195 5.2:-78371853 None:intergenic
ACGTGATATTGGTGAGACTA+AGG 0.517984 5.2:-78371459 None:intergenic
AGACTAAGGTACTTGAGATC+AGG 0.518799 5.2:-78371445 None:intergenic
TCGTCAAATTCTCTATCATA+GGG 0.520873 5.2:+78370793 MS.gene065516:CDS
ACGTGGATCAATGCCGCCAT+TGG 0.525825 5.2:+78370635 MS.gene065516:CDS
AATTCAGGAAAATCTAAGAC+AGG 0.526097 5.2:-78371754 None:intergenic
GCTCGGAGAAGACTGAGTAC+AGG 0.526432 5.2:-78371571 None:intergenic
GAATTCATAAATTACGGGGC+TGG 0.526816 5.2:-78370474 None:intergenic
GAGGGGTGTGGTACGAATGC+AGG 0.527172 5.2:-78370390 None:intergenic
CTCACTCTGCTTACCGCCGC+CGG 0.531519 5.2:+78370680 MS.gene065516:CDS
AACAGATTCACTTTCAGGAG+TGG 0.531982 5.2:-78371545 None:intergenic
GTCAATGCCGTCATCGTCGG+AGG 0.548656 5.2:-78370306 None:intergenic
GCCTGAGAGAGACAAGGTTA+GGG 0.552761 5.2:-78370736 None:intergenic
GAACAGGACAGCCAGAGAGA+AGG 0.554699 5.2:-78371297 None:intergenic
AAGGTTAGGGCAAGAGAAGA+GGG 0.555833 5.2:-78370723 None:intergenic
GAGGACAGTGTTGACGAAAA+CGG 0.556678 5.2:-78370525 None:intergenic
CAAGGTTAGGGCAAGAGAAG+AGG 0.557826 5.2:-78370724 None:intergenic
TACCGCCGCCGGCTTCAACA+GGG 0.559701 5.2:+78370691 MS.gene065516:CDS
CTCGAGGTTTGGGCCAATGG+CGG 0.559983 5.2:-78370648 None:intergenic
GAAGGTGATGAATCAAATGA+TGG 0.561486 5.2:-78371968 None:intergenic
TGCGAGATTTGCGGAGAGTG+AGG 0.565813 5.2:-78370544 None:intergenic
TCTCATAACATTCAACTACA+AGG 0.568167 5.2:+78371867 MS.gene065516:CDS
GCTGCTTAGTTTAACTACAA+AGG 0.572115 5.2:+78371618 MS.gene065516:CDS
GATGGATACTCCGATGGCGG+AGG 0.578378 5.2:+78370271 None:intergenic
GCGCCATTTGCGAGAAACGA+GGG 0.586636 5.2:-78370408 None:intergenic
TTTGCGAGAAACGAGGGGTG+TGG 0.589736 5.2:-78370402 None:intergenic
AATTTCCGAGATATTCTCGA+AGG 0.596203 5.2:-78372057 None:intergenic
GAGTCAACCTCCGACGATGA+CGG 0.598801 5.2:+78370299 MS.gene065516:CDS
GGAACTGTCGCAGAAATCCA+AGG 0.603410 5.2:-78370453 None:intergenic
AAAGCTCTATATAAAGCAAG+TGG 0.607124 5.2:-78371780 None:intergenic
TGAAGATGACACCCGAAGTG+TGG 0.610539 5.2:-78371359 None:intergenic
TTCAGGAAAATCTAAGACAG+GGG 0.611075 5.2:-78371752 None:intergenic
TGTCATCTTCAACCTTGAAG+AGG 0.618499 5.2:+78371371 MS.gene065516:CDS
TGTTGGGAACTTGCACAATG+TGG 0.624137 5.2:+78371498 MS.gene065516:CDS
TGCGCCATTTGCGAGAAACG+AGG 0.630626 5.2:-78370409 None:intergenic
GGAGGCGATGGATACTCCGA+TGG 0.633912 5.2:+78370265 None:intergenic
CGCCATTTGCGAGAAACGAG+GGG 0.635930 5.2:-78370407 None:intergenic
CGCCATTGGCCCAAACCTCG+AGG 0.640548 5.2:+78370649 MS.gene065516:CDS
TCAATCGAGTGGTTATAGAA+GGG 0.641238 5.2:-78370611 None:intergenic
ATTCAGGAAAATCTAAGACA+GGG 0.645585 5.2:-78371753 None:intergenic
GAACGTGATAGCATGAGAGA+CGG 0.645881 5.2:-78370580 None:intergenic
GGCGATGGATACTCCGATGG+CGG 0.659130 5.2:+78370268 None:intergenic
AGGCACCCTGTTGAAGCCGG+CGG 0.664495 5.2:-78370696 None:intergenic
TGATCCACGTGTCAATCGAG+TGG 0.668936 5.2:-78370622 None:intergenic
AGTTGCAGCAACTTCAGTGA+CGG 0.673174 5.2:-78371235 None:intergenic
TATCGAATTCATAAATTACG+GGG 0.674759 5.2:-78370478 None:intergenic
ATTGTTGCCTGAGAGAGACA+AGG 0.696101 5.2:-78370742 None:intergenic
ATAACCACTCGATTGACACG+TGG 0.713847 5.2:+78370618 MS.gene065516:CDS
GAGTGAGATGAAACTCCTCG+AGG 0.759501 5.2:-78370664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACGATAAAAAACAAAAAGAA+AGG - chr5.2:78370777-78370796 None:intergenic 20.0%
!! ATTAACAGCTTATTTCAATA+GGG + chr5.2:78371027-78371046 MS.gene065516:intron 20.0%
!! GTTATCGAATTCATAAATTA+CGG - chr5.2:78370483-78370502 None:intergenic 20.0%
!! TTATCGAATTCATAAATTAC+GGG - chr5.2:78370482-78370501 None:intergenic 20.0%
! AAAAATCAATGTTGAGAATG+AGG + chr5.2:78371396-78371415 MS.gene065516:CDS 25.0%
! AAACAAAAAGAAAGGATGAA+AGG - chr5.2:78370769-78370788 None:intergenic 25.0%
! ACTACTAGACATGTATAATT+TGG + chr5.2:78371255-78371274 MS.gene065516:CDS 25.0%
! AGATCCAAACAAAAAATACA+CGG - chr5.2:78371915-78371934 None:intergenic 25.0%
! CATTAACAGCTTATTTCAAT+AGG + chr5.2:78371026-78371045 MS.gene065516:intron 25.0%
! TATCGAATTCATAAATTACG+GGG - chr5.2:78370481-78370500 None:intergenic 25.0%
! TTCAAATTATTATCCCTGTT+GGG - chr5.2:78370899-78370918 None:intergenic 25.0%
! TTTCAAATTATTATCCCTGT+TGG - chr5.2:78370900-78370919 None:intergenic 25.0%
!!! ATTGATTTTTAACCTCTTCA+AGG - chr5.2:78371386-78371405 None:intergenic 25.0%
AAAGCTCTATATAAAGCAAG+TGG - chr5.2:78371783-78371802 None:intergenic 30.0%
AAATGGGATACAAGACATTT+AGG - chr5.2:78372025-78372044 None:intergenic 30.0%
AAGGTCAATAAAGGTCAAAT+GGG - chr5.2:78372041-78372060 None:intergenic 30.0%
ACTTGCTTTATATAGAGCTT+TGG + chr5.2:78371782-78371801 MS.gene065516:CDS 30.0%
AGTCTATTCAAACATACAAC+TGG + chr5.2:78370844-78370863 MS.gene065516:intron 30.0%
ATATTCTCGAAGGTCAATAA+AGG - chr5.2:78372050-78372069 None:intergenic 30.0%
ATCGTCAAATTCTCTATCAT+AGG + chr5.2:78370792-78370811 MS.gene065516:CDS 30.0%
ATTCATCACCTTCATATGAA+TGG + chr5.2:78371978-78371997 MS.gene065516:CDS 30.0%
TCGTCAAATTCTCTATCATA+GGG + chr5.2:78370793-78370812 MS.gene065516:CDS 30.0%
TCTCATAACATTCAACTACA+AGG + chr5.2:78371867-78371886 MS.gene065516:CDS 30.0%
TTCATCACCTTCATATGAAT+GGG + chr5.2:78371979-78371998 MS.gene065516:CDS 30.0%
TTCATGACAACTTACTAATC+CGG - chr5.2:78370991-78371010 None:intergenic 30.0%
! AATTCAGGAAAATCTAAGAC+AGG - chr5.2:78371757-78371776 None:intergenic 30.0%
! ACAAGCTATGTTTTGCAAAA+TGG + chr5.2:78372097-78372116 MS.gene065516:CDS 30.0%
! AGACATTTAGGAACACTTTT+CGG - chr5.2:78372013-78372032 None:intergenic 30.0%
! ATTCAGGAAAATCTAAGACA+GGG - chr5.2:78371756-78371775 None:intergenic 30.0%
AAAAATCTCCGATCTACCAA+AGG + chr5.2:78372183-78372202 MS.gene065516:CDS 35.0%
AATTTCCGAGATATTCTCGA+AGG - chr5.2:78372060-78372079 None:intergenic 35.0%
ATCAATGTTGAGAATGAGGT+TGG + chr5.2:78371400-78371419 MS.gene065516:CDS 35.0%
ATGTGATGTAGTAAGGAGTT+TGG - chr5.2:78370347-78370366 None:intergenic 35.0%
ATTGACCTTCGAGAATATCT+CGG + chr5.2:78372052-78372071 MS.gene065516:CDS 35.0%
GAAGGTCAATAAAGGTCAAA+TGG - chr5.2:78372042-78372061 None:intergenic 35.0%
GAAGGTGATGAATCAAATGA+TGG - chr5.2:78371971-78371990 None:intergenic 35.0%
GCTGCTTAGTTTAACTACAA+AGG + chr5.2:78371618-78371637 MS.gene065516:CDS 35.0%
TCAATCGAGTGGTTATAGAA+GGG - chr5.2:78370614-78370633 None:intergenic 35.0%
TCAATGTTGAGAATGAGGTT+GGG + chr5.2:78371401-78371420 MS.gene065516:CDS 35.0%
TCTCGGAAATTTAAATGAGC+TGG + chr5.2:78372069-78372088 MS.gene065516:CDS 35.0%
TTCACTTCCCATTCATATGA+AGG - chr5.2:78371989-78372008 None:intergenic 35.0%
! AGTTTTTCGCTAGAACAACA+GGG + chr5.2:78372148-78372167 MS.gene065516:CDS 35.0%
! TTCAGGAAAATCTAAGACAG+GGG - chr5.2:78371755-78371774 None:intergenic 35.0%
! TTCTTTTGCTCCTGAATCTT+TGG + chr5.2:78371336-78371355 MS.gene065516:CDS 35.0%
!! AATCAAATGATGGATGCATC+TGG - chr5.2:78371961-78371980 None:intergenic 35.0%
!! ATTTCCAGATTTTCGAGAAC+AGG - chr5.2:78371316-78371335 None:intergenic 35.0%
!!! GTGTCCGTGTATTTTTTGTT+TGG + chr5.2:78371908-78371927 MS.gene065516:intron 35.0%
AACAGATTCACTTTCAGGAG+TGG - chr5.2:78371548-78371567 None:intergenic 40.0%
ACAACTGGATCTATGAAGCA+CGG + chr5.2:78370859-78370878 MS.gene065516:intron 40.0%
ACGTGATATTGGTGAGACTA+AGG - chr5.2:78371462-78371481 None:intergenic 40.0%
AGCATCACGAAACGTGATAT+TGG - chr5.2:78371473-78371492 None:intergenic 40.0%
CAATGTTGAGAATGAGGTTG+GGG + chr5.2:78371402-78371421 MS.gene065516:CDS 40.0%
GAATTCATAAATTACGGGGC+TGG - chr5.2:78370477-78370496 None:intergenic 40.0%
GGTTCAACAGATTCACTTTC+AGG - chr5.2:78371553-78371572 None:intergenic 40.0%
GTCAATCGAGTGGTTATAGA+AGG - chr5.2:78370615-78370634 None:intergenic 40.0%
GTTATGAGAGTTTGTAGCAC+AGG - chr5.2:78371856-78371875 None:intergenic 40.0%
GTTTAATTCCAGAGAGAGCT+CGG - chr5.2:78371591-78371610 None:intergenic 40.0%
TAAAGCAAGTGGCGAAATTC+AGG - chr5.2:78371772-78371791 None:intergenic 40.0%
TCTGCAATTGCAAGACGATT+CGG + chr5.2:78371201-78371220 MS.gene065516:CDS 40.0%
TGTCATCTTCAACCTTGAAG+AGG + chr5.2:78371371-78371390 MS.gene065516:CDS 40.0%
TTGTGTCGTGTTTGTGACAT+GGG + chr5.2:78370951-78370970 MS.gene065516:intron 40.0%
! AGACTAAGGTACTTGAGATC+AGG - chr5.2:78371448-78371467 None:intergenic 40.0%
! CAGTTTTTCGCTAGAACAAC+AGG + chr5.2:78372147-78372166 MS.gene065516:CDS 40.0%
! CTTTTGTCTTGTACAAGCAG+TGG + chr5.2:78371719-78371738 MS.gene065516:intron 40.0%
! GTAGTAAGGAGTTTGGTAGT+TGG - chr5.2:78370340-78370359 None:intergenic 40.0%
! GTTTTTCGCTAGAACAACAG+GGG + chr5.2:78372149-78372168 MS.gene065516:CDS 40.0%
! TTTTTCGCTAGAACAACAGG+GGG + chr5.2:78372150-78372169 MS.gene065516:CDS 40.0%
!! TACGAATGCAGGTTTTGGTA+GGG - chr5.2:78370382-78370401 None:intergenic 40.0%
AAGGTTAGGGCAAGAGAAGA+GGG - chr5.2:78370726-78370745 None:intergenic 45.0%
AGATGAAACTCCTCGAGGTT+TGG - chr5.2:78370662-78370681 None:intergenic 45.0%
AGCAGATGCCTTTGGTAGAT+CGG - chr5.2:78372194-78372213 None:intergenic 45.0%
AGTTGCAGCAACTTCAGTGA+CGG - chr5.2:78371238-78371257 None:intergenic 45.0%
ATAACCACTCGATTGACACG+TGG + chr5.2:78370618-78370637 MS.gene065516:CDS 45.0%
ATGGATGCATCTGGCAACAA+TGG - chr5.2:78371952-78371971 None:intergenic 45.0%
ATTGTTGCCTGAGAGAGACA+AGG - chr5.2:78370745-78370764 None:intergenic 45.0%
CTGAATCTTTGGCCACACTT+CGG + chr5.2:78371347-78371366 MS.gene065516:CDS 45.0%
CTGTCCTGTTCTCGAAAATC+TGG + chr5.2:78371309-78371328 MS.gene065516:CDS 45.0%
CTTGTGTCGTGTTTGTGACA+TGG + chr5.2:78370950-78370969 MS.gene065516:intron 45.0%
GAACGTGATAGCATGAGAGA+CGG - chr5.2:78370583-78370602 None:intergenic 45.0%
GATGAAACTCCTCGAGGTTT+GGG - chr5.2:78370661-78370680 None:intergenic 45.0%
GGAGAGGATGTGATGTAGTA+AGG - chr5.2:78370354-78370373 None:intergenic 45.0%
TCCGAACAATGCGAGATTTG+CGG - chr5.2:78370556-78370575 None:intergenic 45.0%
TCCGCAAATCTCGCATTGTT+CGG + chr5.2:78370552-78370571 MS.gene065516:CDS 45.0%
TCTGTGAATGTCCTTCTCTC+TGG + chr5.2:78371286-78371305 MS.gene065516:CDS 45.0%
TGAATCTTTGGCCACACTTC+GGG + chr5.2:78371348-78371367 MS.gene065516:CDS 45.0%
TGTGTCGTGTTTGTGACATG+GGG + chr5.2:78370952-78370971 MS.gene065516:intron 45.0%
TGTTGGGAACTTGCACAATG+TGG + chr5.2:78371498-78371517 MS.gene065516:CDS 45.0%
TTACTAATCCGGACACTCCT+CGG - chr5.2:78370980-78370999 None:intergenic 45.0%
TTGGAAGAATCTCGAAGCCT+TGG + chr5.2:78370436-78370455 MS.gene065516:CDS 45.0%
! TGTGGTACGAATGCAGGTTT+TGG - chr5.2:78370387-78370406 None:intergenic 45.0%
! TTCGTGATGCTGCTTCTGTT+GGG + chr5.2:78371482-78371501 MS.gene065516:CDS 45.0%
! TTTCGTGATGCTGCTTCTGT+TGG + chr5.2:78371481-78371500 MS.gene065516:CDS 45.0%
!! GAGGACAGTGTTGACGAAAA+CGG - chr5.2:78370528-78370547 None:intergenic 45.0%
!! GTACGAATGCAGGTTTTGGT+AGG - chr5.2:78370383-78370402 None:intergenic 45.0%
CAAGGTTAGGGCAAGAGAAG+AGG - chr5.2:78370727-78370746 None:intergenic 50.0%
CGAAGTGTGGCCAAAGATTC+AGG - chr5.2:78371349-78371368 None:intergenic 50.0%
CTCGCAAATGGCGCAATCTT+TGG + chr5.2:78370417-78370436 MS.gene065516:CDS 50.0%
GAGTGAGATGAAACTCCTCG+AGG - chr5.2:78370667-78370686 None:intergenic 50.0%
GATCAGGCGCGTCTATTTCA+AGG - chr5.2:78371432-78371451 None:intergenic 50.0%
GCCTGAGAGAGACAAGGTTA+GGG - chr5.2:78370739-78370758 None:intergenic 50.0%
GGAACTGTCGCAGAAATCCA+AGG - chr5.2:78370456-78370475 None:intergenic 50.0%
TCTGTCAATGCCGTCATCGT+CGG - chr5.2:78370312-78370331 None:intergenic 50.0%
TGAAGATGACACCCGAAGTG+TGG - chr5.2:78371362-78371381 None:intergenic 50.0%
TGACACGTAGCAGATGCCTT+TGG - chr5.2:78372202-78372221 None:intergenic 50.0%
TGATCCACGTGTCAATCGAG+TGG - chr5.2:78370625-78370644 None:intergenic 50.0%
TGCCTGAGAGAGACAAGGTT+AGG - chr5.2:78370740-78370759 None:intergenic 50.0%
! TTTTGGTAGGGAGGAAGGAG+AGG - chr5.2:78370370-78370389 None:intergenic 50.0%
!! GAATGCAGGTTTTGGTAGGG+AGG - chr5.2:78370379-78370398 None:intergenic 50.0%
AACAGGCACCCTGTTGAAGC+CGG - chr5.2:78370702-78370721 None:intergenic 55.0%
ACACCTACACACGTCCCAAC+AGG + chr5.2:78370882-78370901 MS.gene065516:intron 55.0%
ACGTGGATCAATGCCGCCAT+TGG + chr5.2:78370635-78370654 MS.gene065516:CDS 55.0%
AGTCTTCTCCGAGCTCTCTC+TGG + chr5.2:78371580-78371599 MS.gene065516:CDS 55.0%
ATCCCTGTTGGGACGTGTGT+AGG - chr5.2:78370888-78370907 None:intergenic 55.0%
CACCCCTCGTTTCTCGCAAA+TGG + chr5.2:78370405-78370424 MS.gene065516:CDS 55.0%
CACCTACACACGTCCCAACA+GGG + chr5.2:78370883-78370902 MS.gene065516:intron 55.0%
CGCCATTTGCGAGAAACGAG+GGG - chr5.2:78370410-78370429 None:intergenic 55.0%
CGCTAGAACAACAGGGGGAA+TGG + chr5.2:78372155-78372174 MS.gene065516:CDS 55.0%
GAACAGGACAGCCAGAGAGA+AGG - chr5.2:78371300-78371319 None:intergenic 55.0%
GAGTCAACCTCCGACGATGA+CGG + chr5.2:78370299-78370318 MS.gene065516:CDS 55.0%
GCCCTAACCTTGTCTCTCTC+AGG + chr5.2:78370735-78370754 MS.gene065516:CDS 55.0%
GCGCCATTTGCGAGAAACGA+GGG - chr5.2:78370411-78370430 None:intergenic 55.0%
GCTCGGAGAAGACTGAGTAC+AGG - chr5.2:78371574-78371593 None:intergenic 55.0%
GGGCAAGAGAAGAGGGAAAC+AGG - chr5.2:78370719-78370738 None:intergenic 55.0%
GTTTGTGACATGGGGATCCG+AGG + chr5.2:78370960-78370979 MS.gene065516:intron 55.0%
TGCGAGATTTGCGGAGAGTG+AGG - chr5.2:78370547-78370566 None:intergenic 55.0%
TGCGCCATTTGCGAGAAACG+AGG - chr5.2:78370412-78370431 None:intergenic 55.0%
TTTGCGAGAAACGAGGGGTG+TGG - chr5.2:78370405-78370424 None:intergenic 55.0%
!! GCAGGTTTTGGTAGGGAGGA+AGG - chr5.2:78370375-78370394 None:intergenic 55.0%
CTCCTCGAGGTTTGGGCCAA+TGG - chr5.2:78370654-78370673 None:intergenic 60.0%
CTCGAGGTTTGGGCCAATGG+CGG - chr5.2:78370651-78370670 None:intergenic 60.0%
GTCAATGCCGTCATCGTCGG+AGG - chr5.2:78370309-78370328 None:intergenic 60.0%
! GAGGGGTGTGGTACGAATGC+AGG - chr5.2:78370393-78370412 None:intergenic 60.0%
!! ATGGGGATCCGAGGAGTGTC+CGG + chr5.2:78370969-78370988 MS.gene065516:intron 60.0%
AGGCACCCTGTTGAAGCCGG+CGG - chr5.2:78370699-78370718 None:intergenic 65.0%
CGCCATTGGCCCAAACCTCG+AGG + chr5.2:78370649-78370668 MS.gene065516:CDS 65.0%
CTCACTCTGCTTACCGCCGC+CGG + chr5.2:78370680-78370699 MS.gene065516:CDS 65.0%
!! GGATACTCCGATGGCGGAGG+CGG + chr5.2:78370274-78370293 MS.gene065516:CDS 65.0%
!! TACCGCCGCCGGCTTCAACA+GGG + chr5.2:78370691-78370710 MS.gene065516:CDS 65.0%
!! TTACCGCCGCCGGCTTCAAC+AGG + chr5.2:78370690-78370709 MS.gene065516:CDS 65.0%
CACCCTGTTGAAGCCGGCGG+CGG - chr5.2:78370696-78370715 None:intergenic 70.0%
GACTCTGCCGCCTCCGCCAT+CGG - chr5.2:78370284-78370303 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 78370272 78372237 78370272 ID=MS.gene065516
chr5.2 mRNA 78370272 78372237 78370272 ID=MS.gene065516.t1;Parent=MS.gene065516
chr5.2 exon 78370272 78370828 78370272 ID=MS.gene065516.t1.exon1;Parent=MS.gene065516.t1
chr5.2 CDS 78370272 78370828 78370272 ID=cds.MS.gene065516.t1;Parent=MS.gene065516.t1
chr5.2 exon 78371183 78371639 78371183 ID=MS.gene065516.t1.exon2;Parent=MS.gene065516.t1
chr5.2 CDS 78371183 78371639 78371183 ID=cds.MS.gene065516.t1;Parent=MS.gene065516.t1
chr5.2 exon 78371739 78371888 78371739 ID=MS.gene065516.t1.exon3;Parent=MS.gene065516.t1
chr5.2 CDS 78371739 78371888 78371739 ID=cds.MS.gene065516.t1;Parent=MS.gene065516.t1
chr5.2 exon 78371962 78372237 78371962 ID=MS.gene065516.t1.exon4;Parent=MS.gene065516.t1
chr5.2 CDS 78371962 78372237 78371962 ID=cds.MS.gene065516.t1;Parent=MS.gene065516.t1
Gene Sequence

>MS.gene065516

ATGGATACTCCGATGGCGGAGGCGGCAGAGTCAACCTCCGACGATGACGGCATTGACAGAATAAACCAACTACCAAACTCCTTACTACATCACATCCTCTCCTTCCTCCCTACCAAAACCTGCATTCGTACCACACCCCTCGTTTCTCGCAAATGGCGCAATCTTTGGAAGAATCTCGAAGCCTTGGATTTCTGCGACAGTTCCAGCCCCGTAATTTATGAATTCGATAACGACGAACAGTTCTTGATCTTCTCCGTTTTCGTCAACACTGTCCTCACTCTCCGCAAATCTCGCATTGTTCGGAAGTTCCGTCTCTCATGCTATCACGTTCAACTCGATCCCTTCTATAACCACTCGATTGACACGTGGATCAATGCCGCCATTGGCCCAAACCTCGAGGAGTTTCATCTCACTCTGCTTACCGCCGCCGGCTTCAACAGGGTGCCTGTTTCCCTCTTCTCTTGCCCTAACCTTGTCTCTCTCAGGCAACAATTCCTTTCATCCTTTCTTTTTGTTTTTTATCGTCAAATTCTCTATCATAGGGTAGTTAGTTTAATGTATGTAAGTTTATTAGTCTATTCAAACATACAACTGGATCTATGAAGCACGGACACCTACACACGTCCCAACAGGGATAATAATTTGAAAAAAAAGACACAATTCAGTGTAATCATAGATCTTGTGTCGTGTTTGTGACATGGGGATCCGAGGAGTGTCCGGATTAGTAAGTTGTCATGAAATAGACTCTTTTAAACATTAACAGCTTATTTCAATAGGGACTACAAATATATTTGCTTTTTTTATTTTTTATTTTTTTTATATTTGCACAGTTCAGCTGTTCTCTGATTTAGTTTAAATGAGATATGATACGTGATGATAACTTGACGTAACATTCATGTAATGTACTTCAGTTTCAATGACTATATCATTCTGCAATTGCAAGACGATTCGGAGATTTGTTTACCGTCACTGAAGTTGCTGCAACTACTAGACATGTATAATTTGGATTTAAATTCTGTGAATGTCCTTCTCTCTGGCTGTCCTGTTCTCGAAAATCTGGAAATTTCTTTTGCTCCTGAATCTTTGGCCACACTTCGGGTGTCATCTTCAACCTTGAAGAGGTTAAAAATCAATGTTGAGAATGAGGTTGGGGCTTACCTTGAAATAGACGCGCCTGATCTCAAGTACCTTAGTCTCACCAATATCACGTTTCGTGATGCTGCTTCTGTTGGGAACTTGCACAATGTGGAAGAAGCACATCTAGATGTATTTTCCACTCCTGAAAGTGAATCTGTTGAACCTGTACTCAGTCTTCTCCGAGCTCTCTCTGGAATTAAACATCTAGAGCTGCTTAGTTTAACTACAAAGGTGAGTGATTAAAGTTTTTATTATTTGTATTATATGTTGTTTTGTGCTAATTATTATTAAATAATCACTTAATCACTTGCTTTTGTCTTGTACAAGCAGTGGCTATTTGCTGCCCCTGTCTTAGATTTTCCTGAATTTCGCCACTTGCTTTATATAGAGCTTTGGTTTCTCTCTGTCAACATAAGTTTTCTGATCGACATGCTTCAAAAATGTCCTGTGCTACAAACTCTCATAACATTCAACTACAAGGTTTGTCTAGAGCTTTGTTGTGTCCGTGTATTTTTTGTTTGGATCTTACATGTGAGTTGTCCATTGTTGCCAGATGCATCCATCATTTGATTCATCACCTTCATATGAATGGGAAGTGAAGCCGAAAAGTGTTCCTAAATGTCTTGTATCCCATTTGACCTTTATTGACCTTCGAGAATATCTCGGAAATTTAAATGAGCTGGAATTTACAAGCTATGTTTTGCAAAATGGACTTGTTTTGAAGACAATGCATATTCGCAGTTTTTCGCTAGAACAACAGGGGGAATGGTTGAAAAAAATCTCCGATCTACCAAAGGCATCTGCTACGTGTCAAGTTAAATTTCACTGA

Protein sequence

>MS.gene065516.t1

MDTPMAEAAESTSDDDGIDRINQLPNSLLHHILSFLPTKTCIRTTPLVSRKWRNLWKNLEALDFCDSSSPVIYEFDNDEQFLIFSVFVNTVLTLRKSRIVRKFRLSCYHVQLDPFYNHSIDTWINAAIGPNLEEFHLTLLTAAGFNRVPVSLFSCPNLVSLRQQFLSSFLFVFYRQILYHRVVSLIFNDYIILQLQDDSEICLPSLKLLQLLDMYNLDLNSVNVLLSGCPVLENLEISFAPESLATLRVSSSTLKRLKINVENEVGAYLEIDAPDLKYLSLTNITFRDAASVGNLHNVEEAHLDVFSTPESESVEPVLSLLRALSGIKHLELLSLTTKWLFAAPVLDFPEFRHLLYIELWFLSVNISFLIDMLQKCPVLQTLITFNYKMHPSFDSSPSYEWEVKPKSVPKCLVSHLTFIDLREYLGNLNELEFTSYVLQNGLVLKTMHIRSFSLEQQGEWLKKISDLPKASATCQVKFH