AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056133

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056133.t1 MTR_7g056433 55.794 233 90 7 2 226 82 309 1.24e-68 216
MS.gene056133.t1 MTR_7g115270 45.528 246 108 9 2 226 82 322 7.07e-52 173
MS.gene056133.t1 MTR_5g013500 43.496 246 92 7 2 226 65 284 1.44e-48 163
MS.gene056133.t1 MTR_7g098510 40.086 232 124 7 2 226 88 311 1.28e-40 143
MS.gene056133.t1 MTR_1g041245 43.043 230 116 9 2 224 81 302 2.51e-40 142
MS.gene056133.t1 MTR_7g098570 38.793 232 127 7 2 226 90 313 7.71e-39 140
MS.gene056133.t1 MTR_7g032380 41.262 206 84 7 21 222 100 272 1.01e-36 132
MS.gene056133.t1 MTR_7g056430 42.793 222 88 9 2 214 79 270 1.28e-36 136
MS.gene056133.t1 MTR_7g056420 42.793 222 88 9 2 214 79 270 1.32e-36 136
MS.gene056133.t1 MTR_7g032370 42.029 207 99 8 21 222 78 268 3.70e-36 130
MS.gene056133.t1 MTR_3g036250 39.407 236 112 10 2 226 75 290 7.65e-35 127
MS.gene056133.t1 MTR_7g056447 63.964 111 35 3 2 111 79 185 3.68e-34 124
MS.gene056133.t1 MTR_7g098480 37.391 230 131 7 2 226 88 309 6.85e-33 124
MS.gene056133.t1 MTR_7g034120 40.991 222 115 9 2 214 8 222 1.34e-32 120
MS.gene056133.t1 MTR_7g034115 37.946 224 129 7 3 222 82 299 2.62e-31 118
MS.gene056133.t1 MTR_3g040700 36.325 234 119 9 3 226 114 327 7.70e-31 118
MS.gene056133.t1 MTR_7g033915 38.596 228 102 10 2 219 81 280 1.79e-29 113
MS.gene056133.t1 MTR_7g033990 39.207 227 120 10 2 219 81 298 4.65e-27 107
MS.gene056133.t1 MTR_5g008950 32.599 227 121 8 7 222 80 285 4.83e-27 107
MS.gene056133.t1 MTR_7g056417 42.581 155 75 4 50 192 5 157 2.47e-26 100
MS.gene056133.t1 MTR_7g088260 34.091 220 129 5 2 214 161 371 3.77e-25 102
MS.gene056133.t1 MTR_0492s0020 34.862 218 122 7 2 214 156 358 8.11e-25 101
MS.gene056133.t1 MTR_0543s0010 34.862 218 122 7 2 214 156 358 1.01e-24 101
MS.gene056133.t1 MTR_3g023630 33.641 217 136 5 4 219 81 290 1.05e-24 100
MS.gene056133.t1 MTR_6g045333 34.934 229 135 6 4 222 139 363 4.29e-24 99.8
MS.gene056133.t1 MTR_5g007410 33.632 223 129 5 4 214 102 317 4.66e-24 99.8
MS.gene056133.t1 MTR_1g053025 34.615 208 108 9 25 215 104 300 1.52e-23 97.8
MS.gene056133.t1 MTR_6g022500 35.648 216 126 7 3 212 176 384 1.62e-23 98.2
MS.gene056133.t1 MTR_5g073420 34.434 212 125 6 4 213 88 287 2.64e-23 97.1
MS.gene056133.t1 MTR_2g007450 33.198 247 121 8 4 215 93 330 3.05e-23 97.1
MS.gene056133.t1 MTR_7g007080 33.054 239 124 10 10 231 84 303 5.59e-23 96.3
MS.gene056133.t1 MTR_5g058000 35.321 218 120 9 3 214 83 285 9.20e-23 95.5
MS.gene056133.t1 MTR_0009s0080 34.746 236 126 8 4 223 94 317 1.10e-22 95.5
MS.gene056133.t1 MTR_3g107100 33.333 201 125 4 23 218 103 299 2.05e-22 94.7
MS.gene056133.t1 MTR_6g011460 34.862 218 126 6 3 214 121 328 2.13e-22 94.7
MS.gene056133.t1 MTR_3g082890 31.837 245 128 9 2 218 164 397 3.08e-22 94.7
MS.gene056133.t1 MTR_5g008920 32.524 206 126 5 11 212 92 288 3.08e-22 94.0
MS.gene056133.t1 MTR_3g087260 36.181 199 103 6 33 220 184 369 4.64e-22 94.0
MS.gene056133.t1 MTR_3g087260 43.000 100 55 2 19 118 82 179 7.07e-15 73.6
MS.gene056133.t1 MTR_3g082890 31.950 241 125 9 2 214 84 313 1.19e-21 92.8
MS.gene056133.t1 MTR_3g071850 34.404 218 129 6 4 212 102 314 1.52e-21 93.2
MS.gene056133.t1 MTR_3g108150 36.161 224 120 8 2 214 83 294 3.83e-21 90.9
MS.gene056133.t1 MTR_5g039470 35.096 208 103 7 24 212 78 272 8.92e-21 89.4
MS.gene056133.t1 MTR_5g083890 36.158 177 92 6 51 216 141 307 1.49e-20 90.1
MS.gene056133.t1 MTR_3g108560 37.273 220 117 10 3 214 91 297 2.96e-20 87.8
MS.gene056133.t1 MTR_3g108560 36.481 233 127 10 3 227 91 310 3.55e-20 88.2
MS.gene056133.t1 MTR_1089s0010 31.429 210 127 6 4 208 84 281 3.69e-20 88.2
MS.gene056133.t1 MTR_5g012840 32.877 219 93 9 2 214 59 229 4.51e-20 87.0
MS.gene056133.t1 MTR_5g045170 33.913 230 131 7 2 218 83 304 6.24e-20 87.8
MS.gene056133.t1 MTR_4g134150 40.000 140 74 4 2 140 80 210 9.89e-20 84.7
MS.gene056133.t1 MTR_7g056287 35.567 194 111 7 22 213 99 280 1.60e-19 86.3
MS.gene056133.t1 MTR_6g040270 30.093 216 144 3 4 218 84 293 1.95e-19 86.3
MS.gene056133.t1 MTR_2g007400 31.401 207 127 6 22 219 110 310 2.24e-19 86.3
MS.gene056133.t1 MTR_2g008320 33.333 195 106 7 45 226 166 349 2.95e-19 85.9
MS.gene056133.t1 MTR_5g061680 32.701 211 114 6 3 213 87 269 5.15e-19 84.3
MS.gene056133.t1 MTR_7g056277 36.508 189 106 7 22 208 355 531 7.63e-19 85.1
MS.gene056133.t1 MTR_8g085430 51.000 100 44 4 21 118 107 203 8.41e-19 84.0
MS.gene056133.t1 MTR_1g107385 38.202 178 86 7 51 216 165 330 2.91e-18 83.2
MS.gene056133.t1 MTR_3g107120 33.333 222 130 8 4 216 93 305 3.85e-18 82.8
MS.gene056133.t1 MTR_3g026920 36.364 187 79 7 47 216 159 322 3.99e-18 82.8
MS.gene056133.t1 MTR_5g061410 33.673 196 121 4 23 214 77 267 1.98e-17 79.3
MS.gene056133.t1 MTR_5g058100 33.186 226 122 9 3 214 84 294 3.26e-17 80.1
MS.gene056133.t1 MTR_3g105060 30.556 216 124 8 10 213 87 288 3.98e-17 79.7
MS.gene056133.t1 MTR_3g099830 32.850 207 110 9 20 214 86 275 4.00e-17 79.7
MS.gene056133.t1 MTR_7g026500 31.034 232 133 9 3 218 89 309 4.99e-17 79.3
MS.gene056133.t1 MTR_1g108820 31.982 222 113 8 22 219 96 303 5.30e-17 79.3
MS.gene056133.t1 MTR_2g007360 32.222 180 106 5 51 222 107 278 5.48e-17 79.3
MS.gene056133.t1 MTR_7g075820 29.680 219 124 7 23 221 103 311 5.95e-17 79.3
MS.gene056133.t1 MTR_5g031970 35.586 222 101 9 2 212 74 264 7.46e-17 78.6
MS.gene056133.t1 MTR_2g007500 33.493 209 112 5 22 212 91 290 8.34e-17 78.2
MS.gene056133.t1 MTR_7g034110 30.531 226 103 9 4 220 80 260 1.37e-16 77.8
MS.gene056133.t1 MTR_1g108820 32.258 217 113 7 22 216 96 300 1.46e-16 77.8
MS.gene056133.t1 MTR_7g056020 35.545 211 111 7 24 221 92 290 1.49e-16 78.6
MS.gene056133.t1 MTR_7g007340 37.714 175 93 6 44 214 100 262 1.68e-16 77.8
MS.gene056133.t1 MTR_5g073340 33.184 223 116 10 7 214 66 270 1.71e-16 77.4
MS.gene056133.t1 MTR_3g107160 31.553 206 124 8 25 223 107 302 2.28e-16 77.4
MS.gene056133.t1 MTR_5g063950 34.021 194 116 4 23 212 80 265 3.07e-16 77.0
MS.gene056133.t1 MTR_7g007370 30.645 186 111 6 51 227 93 269 6.65e-16 75.9
MS.gene056133.t1 MTR_2g036470 32.000 200 123 5 22 214 110 303 7.55e-16 76.3
MS.gene056133.t1 MTR_1g108800 34.171 199 95 8 24 205 67 246 1.32e-15 75.1
MS.gene056133.t1 MTR_3g467400 42.069 145 64 8 12 140 88 228 1.45e-15 75.1
MS.gene056133.t1 MTR_2g005990 33.173 208 112 8 20 213 102 296 1.79e-15 75.1
MS.gene056133.t1 MTR_2g008310 32.620 187 102 7 42 215 109 284 2.55e-15 74.7
MS.gene056133.t1 MTR_1g085120 28.807 243 140 8 3 228 167 393 3.08e-15 74.7
MS.gene056133.t1 MTR_1g085120 28.807 243 140 8 3 228 242 468 3.30e-15 74.7
MS.gene056133.t1 MTR_1g085120 29.515 227 133 6 3 214 254 468 3.31e-15 74.3
MS.gene056133.t1 MTR_1g066830 31.982 222 120 8 4 208 84 291 4.35e-15 73.9
MS.gene056133.t1 MTR_5g073370 33.486 218 120 11 23 226 95 301 5.85e-14 70.5
MS.gene056133.t1 MTR_4g039440 30.952 210 119 7 20 214 121 319 6.79e-14 70.5
MS.gene056133.t1 MTR_3g109982 40.870 115 59 4 2 114 83 190 1.90e-13 69.3
MS.gene056133.t1 MTR_3g109982 34.973 183 104 7 52 226 220 395 9.38e-13 67.4
MS.gene056133.t1 MTR_3g110010 40.870 115 59 4 2 114 83 190 2.39e-13 69.3
MS.gene056133.t1 MTR_3g110010 35.028 177 100 7 52 220 220 389 8.58e-13 67.4
MS.gene056133.t1 MTR_7g055943 29.185 233 148 8 3 228 115 337 2.51e-13 68.9
MS.gene056133.t1 MTR_7g075800 26.606 218 118 7 31 214 109 318 6.67e-13 67.8
MS.gene056133.t1 MTR_6g022360 33.929 168 97 5 56 214 154 316 7.06e-13 67.4
MS.gene056133.t1 MTR_5g076150 30.688 189 97 6 48 208 18 200 7.31e-13 66.2
MS.gene056133.t1 MTR_5g039450 30.622 209 95 8 24 212 99 277 8.95e-13 67.0
MS.gene056133.t1 MTR_8g016130 44.037 109 52 3 30 136 61 162 1.03e-12 64.3
MS.gene056133.t1 MTR_5g065100 40.000 120 63 5 23 139 100 213 2.39e-12 65.9
MS.gene056133.t1 MTR_4g080610 33.750 160 87 5 79 226 124 276 2.45e-12 65.9
MS.gene056133.t1 MTR_6g022520 32.456 228 120 9 3 212 10 221 2.73e-12 65.5
MS.gene056133.t1 MTR_5g054920 36.170 141 71 5 100 230 3 134 6.59e-12 62.8
MS.gene056133.t1 MTR_6g013160 26.939 245 144 10 2 214 111 352 2.27e-11 63.2
MS.gene056133.t1 MTR_6g044572 29.048 210 120 6 21 228 123 305 3.33e-11 62.4
MS.gene056133.t1 MTR_6g044560 29.048 210 120 6 21 228 299 481 6.72e-11 62.0
MS.gene056133.t1 MTR_5g045510 32.338 201 117 7 4 195 88 278 8.90e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056133.t1 AT5G56420 23.431 239 134 5 22 214 95 330 3.19e-11 62.8
MS.gene056133.t1 AT5G56420 23.431 239 134 5 22 214 95 330 3.19e-11 62.8
MS.gene056133.t1 AT5G56420 23.431 239 134 5 22 214 95 330 3.19e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTAGTTTGCTTTGC+GGG 0.254247 7.3:+54627388 MS.gene056133:CDS
TCTCCTCAAAACACTTCATT+TGG 0.288046 7.3:+54627185 MS.gene056133:CDS
ACGCCGGGCTACTCTTGTTT+TGG 0.295919 7.3:+54627293 MS.gene056133:CDS
TATAAATCACAGTGGTTCAT+AGG 0.322338 7.3:+54627505 MS.gene056133:intron
CTTGTTGTTCTTCATTTGCA+TGG 0.335604 7.3:+54627123 MS.gene056133:CDS
TCAATTTGAAAATATGCAAC+AGG 0.350796 7.3:+54627052 MS.gene056133:CDS
AGCATAAACGCAGTGAGAAT+TGG 0.354202 7.3:+54627581 MS.gene056133:CDS
GGACATCCTGATAAAAGCTT+TGG 0.389061 7.3:-54627240 None:intergenic
GACAACTTCATTTCCATTCC+CGG 0.397008 7.3:-54627755 None:intergenic
TAGCAGTCTTGTGGACTTGT+GGG 0.409665 7.3:+54628254 MS.gene056133:intron
ATGTTTGCTCTGATCAAATT+CGG 0.412476 7.3:-54627336 None:intergenic
TATTTGCAATTCCTCGAGAA+TGG 0.415925 7.3:-54627262 None:intergenic
ATATGCAACAGGGTTAGCTT+TGG 0.426166 7.3:+54627063 MS.gene056133:CDS
AAAATTTCTGTGTGTAGAAC+CGG 0.431789 7.3:+54627413 MS.gene056133:CDS
CTCCTCAAAACACTTCATTT+GGG 0.453240 7.3:+54627186 MS.gene056133:CDS
TGAACTGTTGACAGGACTCC+GGG 0.456812 7.3:+54627737 MS.gene056133:intron
GTTCTCTTTAGTTTGCTTTG+CGG 0.461437 7.3:+54627387 MS.gene056133:CDS
CTAGCAGTCTTGTGGACTTG+TGG 0.464238 7.3:+54628253 MS.gene056133:intron
TTGTTGTTCTTCATTTGCAT+GGG 0.466155 7.3:+54627124 MS.gene056133:CDS
ATTTGCAATTCCTCGAGAAT+GGG 0.469351 7.3:-54627261 None:intergenic
GACATCCTGATAAAAGCTTT+GGG 0.470482 7.3:-54627239 None:intergenic
GACAAACAAAACCTCATGAA+TGG 0.508876 7.3:-54627653 None:intergenic
TGTTGACAGGACTCCGGGAA+TGG 0.516876 7.3:+54627742 MS.gene056133:intron
AAGAAATAAGGTGGAAGGAT+CGG 0.526924 7.3:-54626951 None:intergenic
AAATAAGGTGGAAGGATCGG+AGG 0.530454 7.3:-54626948 None:intergenic
TTGAACTGTTGACAGGACTC+CGG 0.530999 7.3:+54627736 MS.gene056133:intron
TGCAAATAAAATACTTACGC+CGG 0.532696 7.3:+54627277 MS.gene056133:CDS
GCAAATAAAATACTTACGCC+GGG 0.536247 7.3:+54627278 MS.gene056133:CDS
GGGAATGGAAATGAAGTTGT+CGG 0.537471 7.3:+54627757 MS.gene056133:CDS
TTTACGCCGCTGTGCAAAGA+GGG 0.538004 7.3:+54627019 MS.gene056133:CDS
ATCTATTGACATCGTGCGAA+TGG 0.539011 7.3:-54626993 None:intergenic
TGACATCGTGCGAATGGTGG+AGG 0.544161 7.3:-54626987 None:intergenic
AATAAGGTGGAAGGATCGGA+GGG 0.544415 7.3:-54626947 None:intergenic
GAATCTTTCTCGTGTCGTTG+TGG 0.553434 7.3:+54627155 MS.gene056133:CDS
CCTCCAAAACAAGAGTAGCC+CGG 0.556074 7.3:-54627296 None:intergenic
GTTTCAAAATCTAATCCACT+TGG 0.562255 7.3:+54627546 MS.gene056133:CDS
TATTGACATCGTGCGAATGG+TGG 0.579149 7.3:-54626990 None:intergenic
ATCAGGATGTCCCATTCTCG+AGG 0.581507 7.3:+54627251 MS.gene056133:CDS
TCAAAATCTGACCATTCATG+AGG 0.592826 7.3:+54627642 MS.gene056133:CDS
AACGCAGTGAGAATTGGAAG+TGG 0.609924 7.3:+54627587 MS.gene056133:CDS
CTGCAACTGAAAATGCTCAA+AGG 0.614497 7.3:-54627096 None:intergenic
GCTTAAGAGTAAGTTCCAAG+TGG 0.619042 7.3:-54627561 None:intergenic
TCTCTTTAGTTTGCTTTGCG+GGG 0.625689 7.3:+54627389 MS.gene056133:CDS
CAATTTGAAAATATGCAACA+GGG 0.626273 7.3:+54627053 MS.gene056133:CDS
ACGCAGTGAGAATTGGAAGT+GGG 0.644120 7.3:+54627588 MS.gene056133:CDS
GTTTACGCCGCTGTGCAAAG+AGG 0.652228 7.3:+54627018 MS.gene056133:CDS
CATGCAAATGAAGAACAACA+AGG 0.662478 7.3:-54627122 None:intergenic
TTCGATCCCTCTTTGCACAG+CGG 0.666997 7.3:-54627025 None:intergenic
ATAAGGTGGAAGGATCGGAG+GGG 0.669279 7.3:-54626946 None:intergenic
ATGCAAATGAAGAACAACAA+GGG 0.703510 7.3:-54627121 None:intergenic
CAAACTAAAGAGAACACTCG+CGG 0.723328 7.3:-54627379 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTCATTTAAACATTTAT+TGG - chr7.3:54627461-54627480 None:intergenic 15.0%
!! ATAAATGTTTAAATGAAACT+AGG + chr7.3:54627461-54627480 MS.gene056133:intron 15.0%
!!! TATAAGCTTTTGAAGAAATA+AGG - chr7.3:54626966-54626985 None:intergenic 20.0%
!!! TCAAATTTTCAAGTATGTAT+TGG + chr7.3:54628125-54628144 MS.gene056133:intron 20.0%
! AAAATATTTGAACTGTTGAC+AGG + chr7.3:54627729-54627748 MS.gene056133:intron 25.0%
! AAGCTAATTTCGATATCATT+TGG - chr7.3:54627966-54627985 None:intergenic 25.0%
! CAATTTGAAAATATGCAACA+GGG + chr7.3:54627053-54627072 MS.gene056133:CDS 25.0%
! GTACTTAACATTTAGATCTA+TGG - chr7.3:54627944-54627963 None:intergenic 25.0%
! TATGCAATGCTAAGATTTAA+TGG + chr7.3:54628099-54628118 MS.gene056133:intron 25.0%
! TCAATTTGAAAATATGCAAC+AGG + chr7.3:54627052-54627071 MS.gene056133:CDS 25.0%
!! CTATCTTTTATAAATCACAG+TGG + chr7.3:54627497-54627516 MS.gene056133:intron 25.0%
!! TGTTGCATATTTTCAAATTG+AGG - chr7.3:54627053-54627072 None:intergenic 25.0%
!!! ATTGGCTTTCATGTATTAAA+GGG + chr7.3:54628143-54628162 MS.gene056133:intron 25.0%
!!! TATTGGCTTTCATGTATTAA+AGG + chr7.3:54628142-54628161 MS.gene056133:intron 25.0%
AAAAAGGTGAAAAACTGTTG+AGG - chr7.3:54627697-54627716 None:intergenic 30.0%
AAAATTTCTGTGTGTAGAAC+CGG + chr7.3:54627413-54627432 MS.gene056133:CDS 30.0%
AACATTTAGATCTATGGAAG+AGG - chr7.3:54627938-54627957 None:intergenic 30.0%
ATGCAAATGAAGAACAACAA+GGG - chr7.3:54627124-54627143 None:intergenic 30.0%
ATGTTTGCTCTGATCAAATT+CGG - chr7.3:54627339-54627358 None:intergenic 30.0%
GTTTCAAAATCTAATCCACT+TGG + chr7.3:54627546-54627565 MS.gene056133:CDS 30.0%
TATAAATCACAGTGGTTCAT+AGG + chr7.3:54627505-54627524 MS.gene056133:intron 30.0%
TGCAAATAAAATACTTACGC+CGG + chr7.3:54627277-54627296 MS.gene056133:CDS 30.0%
! CTTTAAAAACATGGAATGTG+AGG + chr7.3:54627849-54627868 MS.gene056133:intron 30.0%
! TTGTTGTTCTTCATTTGCAT+GGG + chr7.3:54627124-54627143 MS.gene056133:CDS 30.0%
!! AAGCTTTTGAAGAAATAAGG+TGG - chr7.3:54626963-54626982 None:intergenic 30.0%
!! TTGATTGATGATGACAGTTA+TGG + chr7.3:54628022-54628041 MS.gene056133:intron 30.0%
!! TTTTGAAGAAATAAGGTGGA+AGG - chr7.3:54626959-54626978 None:intergenic 30.0%
!!! ATGGTCAGATTTTGAAGTTT+CGG - chr7.3:54627637-54627656 None:intergenic 30.0%
!!! TGGATTAGATTTTGAAACGT+GGG - chr7.3:54627544-54627563 None:intergenic 30.0%
AAGAAATAAGGTGGAAGGAT+CGG - chr7.3:54626954-54626973 None:intergenic 35.0%
AGAGGCAGTCTTAATTGAAA+TGG - chr7.3:54627920-54627939 None:intergenic 35.0%
ATGATGACAGTTATGGACTT+AGG + chr7.3:54628029-54628048 MS.gene056133:intron 35.0%
ATTTGCAATTCCTCGAGAAT+GGG - chr7.3:54627264-54627283 None:intergenic 35.0%
CATGCAAATGAAGAACAACA+AGG - chr7.3:54627125-54627144 None:intergenic 35.0%
CTCCTCAAAACACTTCATTT+GGG + chr7.3:54627186-54627205 MS.gene056133:CDS 35.0%
GACAAACAAAACCTCATGAA+TGG - chr7.3:54627656-54627675 None:intergenic 35.0%
GACATCCTGATAAAAGCTTT+GGG - chr7.3:54627242-54627261 None:intergenic 35.0%
GCAAATAAAATACTTACGCC+GGG + chr7.3:54627278-54627297 MS.gene056133:CDS 35.0%
TATTTGCAATTCCTCGAGAA+TGG - chr7.3:54627265-54627284 None:intergenic 35.0%
TCAAAATCTGACCATTCATG+AGG + chr7.3:54627642-54627661 MS.gene056133:CDS 35.0%
TCTCCTCAAAACACTTCATT+TGG + chr7.3:54627185-54627204 MS.gene056133:CDS 35.0%
TGATGACAGTTATGGACTTA+GGG + chr7.3:54628030-54628049 MS.gene056133:intron 35.0%
! GATATCGAAATTAGCTTCGT+CGG + chr7.3:54627969-54627988 MS.gene056133:intron 35.0%
!! ATGTTCTGAGATGTGTTGAA+AGG - chr7.3:54627816-54627835 None:intergenic 35.0%
!! CTTGTTGTTCTTCATTTGCA+TGG + chr7.3:54627123-54627142 MS.gene056133:CDS 35.0%
!! GCTTGAAGGCTTTAAAAACA+TGG + chr7.3:54627840-54627859 MS.gene056133:intron 35.0%
!! GTTCTCTTTAGTTTGCTTTG+CGG + chr7.3:54627387-54627406 MS.gene056133:CDS 35.0%
!! TACCCAAATGAAGTGTTTTG+AGG - chr7.3:54627191-54627210 None:intergenic 35.0%
!! TTCTCTTTAGTTTGCTTTGC+GGG + chr7.3:54627388-54627407 MS.gene056133:CDS 35.0%
!!! AAATGAAGTGTTTTGAGGAG+AGG - chr7.3:54627186-54627205 None:intergenic 35.0%
!!! GGATTAGATTTTGAAACGTG+GGG - chr7.3:54627543-54627562 None:intergenic 35.0%
!!! GTGGATTAGATTTTGAAACG+TGG - chr7.3:54627545-54627564 None:intergenic 35.0%
AGCATAAACGCAGTGAGAAT+TGG + chr7.3:54627581-54627600 MS.gene056133:CDS 40.0%
AGGCATTCAGGAACAATTGT+TGG - chr7.3:54627796-54627815 None:intergenic 40.0%
ATCTATTGACATCGTGCGAA+TGG - chr7.3:54626996-54627015 None:intergenic 40.0%
CAAACTAAAGAGAACACTCG+CGG - chr7.3:54627382-54627401 None:intergenic 40.0%
CTGCAACTGAAAATGCTCAA+AGG - chr7.3:54627099-54627118 None:intergenic 40.0%
GAAATGAAGTTGTCGGTGAT+TGG + chr7.3:54627764-54627783 MS.gene056133:intron 40.0%
GACAACTTCATTTCCATTCC+CGG - chr7.3:54627758-54627777 None:intergenic 40.0%
GCTTAAGAGTAAGTTCCAAG+TGG - chr7.3:54627564-54627583 None:intergenic 40.0%
GGACATCCTGATAAAAGCTT+TGG - chr7.3:54627243-54627262 None:intergenic 40.0%
GGGAATGGAAATGAAGTTGT+CGG + chr7.3:54627757-54627776 MS.gene056133:CDS 40.0%
! CTTTGAGCATTTTCAGTTGC+AGG + chr7.3:54627097-54627116 MS.gene056133:CDS 40.0%
! TGTCTCCCAAAGCTTTTATC+AGG + chr7.3:54627234-54627253 MS.gene056133:CDS 40.0%
!! AGATGTGTTGAAAGGCATTC+AGG - chr7.3:54627808-54627827 None:intergenic 40.0%
!! ATATGCAACAGGGTTAGCTT+TGG + chr7.3:54627063-54627082 MS.gene056133:CDS 40.0%
!! GTCATTTTCTAGCAGTCTTG+TGG + chr7.3:54628245-54628264 MS.gene056133:intron 40.0%
!! TCTCTTTAGTTTGCTTTGCG+GGG + chr7.3:54627389-54627408 MS.gene056133:CDS 40.0%
AAATAAGGTGGAAGGATCGG+AGG - chr7.3:54626951-54626970 None:intergenic 45.0%
AACGCAGTGAGAATTGGAAG+TGG + chr7.3:54627587-54627606 MS.gene056133:CDS 45.0%
AATAAGGTGGAAGGATCGGA+GGG - chr7.3:54626950-54626969 None:intergenic 45.0%
ACGCAGTGAGAATTGGAAGT+GGG + chr7.3:54627588-54627607 MS.gene056133:CDS 45.0%
CTCAGAACATGCTTGCTTGA+AGG + chr7.3:54627826-54627845 MS.gene056133:intron 45.0%
GAGTCGTGTAATGCTCTTAC+CGG - chr7.3:54627435-54627454 None:intergenic 45.0%
TATTGACATCGTGCGAATGG+TGG - chr7.3:54626993-54627012 None:intergenic 45.0%
TGAAGTTGTCGGTGATTGGA+TGG + chr7.3:54627768-54627787 MS.gene056133:intron 45.0%
TTGAACTGTTGACAGGACTC+CGG + chr7.3:54627736-54627755 MS.gene056133:intron 45.0%
! GAAATTAGCTTCGTCGGCAA+GGG + chr7.3:54627975-54627994 MS.gene056133:intron 45.0%
! GAATCTTTCTCGTGTCGTTG+TGG + chr7.3:54627155-54627174 MS.gene056133:CDS 45.0%
! TAGCAGTCTTGTGGACTTGT+GGG + chr7.3:54628254-54628273 MS.gene056133:intron 45.0%
!!! TTTTGTAAATAAAATAAAAA+AGG - chr7.3:54627713-54627732 None:intergenic 5.0%
ATAAGGTGGAAGGATCGGAG+GGG - chr7.3:54626949-54626968 None:intergenic 50.0%
ATCAGGATGTCCCATTCTCG+AGG + chr7.3:54627251-54627270 MS.gene056133:CDS 50.0%
CCTCCAAAACAAGAGTAGCC+CGG - chr7.3:54627299-54627318 None:intergenic 50.0%
TGAACTGTTGACAGGACTCC+GGG + chr7.3:54627737-54627756 MS.gene056133:intron 50.0%
TTCGATCCCTCTTTGCACAG+CGG - chr7.3:54627028-54627047 None:intergenic 50.0%
TTTACGCCGCTGTGCAAAGA+GGG + chr7.3:54627019-54627038 MS.gene056133:CDS 50.0%
! CGAAATTAGCTTCGTCGGCA+AGG + chr7.3:54627974-54627993 MS.gene056133:intron 50.0%
! CTAGCAGTCTTGTGGACTTG+TGG + chr7.3:54628253-54628272 MS.gene056133:intron 50.0%
GTTTACGCCGCTGTGCAAAG+AGG + chr7.3:54627018-54627037 MS.gene056133:CDS 55.0%
TGACATCGTGCGAATGGTGG+AGG - chr7.3:54626990-54627009 None:intergenic 55.0%
TGTTGACAGGACTCCGGGAA+TGG + chr7.3:54627742-54627761 MS.gene056133:intron 55.0%
!! ACGCCGGGCTACTCTTGTTT+TGG + chr7.3:54627293-54627312 MS.gene056133:CDS 55.0%
!!! CCGGGCTACTCTTGTTTTGG+AGG + chr7.3:54627296-54627315 MS.gene056133:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54626940 54628288 54626940 ID=MS.gene056133
chr7.3 mRNA 54626940 54628288 54626940 ID=MS.gene056133.t1;Parent=MS.gene056133
chr7.3 exon 54626940 54627434 54626940 ID=MS.gene056133.t1.exon1;Parent=MS.gene056133.t1
chr7.3 CDS 54626940 54627434 54626940 ID=cds.MS.gene056133.t1;Parent=MS.gene056133.t1
chr7.3 exon 54627517 54627663 54627517 ID=MS.gene056133.t1.exon2;Parent=MS.gene056133.t1
chr7.3 CDS 54627517 54627663 54627517 ID=cds.MS.gene056133.t1;Parent=MS.gene056133.t1
chr7.3 exon 54627751 54627778 54627751 ID=MS.gene056133.t1.exon3;Parent=MS.gene056133.t1
chr7.3 CDS 54627751 54627778 54627751 ID=cds.MS.gene056133.t1;Parent=MS.gene056133.t1
chr7.3 exon 54628260 54628288 54628260 ID=MS.gene056133.t1.exon4;Parent=MS.gene056133.t1
chr7.3 CDS 54628260 54628288 54628260 ID=cds.MS.gene056133.t1;Parent=MS.gene056133.t1
Gene Sequence

>MS.gene056133

ATGTTACCCCTCCGATCCTTCCACCTTATTTCTTCAAAAGCTTATAACCTCCACCATTCGCACGATGTCAATAGATTTGTTTACGCCGCTGTGCAAAGAGGGATCGAAAACCTCAATTTGAAAATATGCAACAGGGTTAGCTTTGGACTCAAGTTACCTTTGAGCATTTTCAGTTGCAGGACCCTTGTTGTTCTTCATTTGCATGGGCTAACAGCGAATCTTTCTCGTGTCGTTGTGGATTTTCCTCTCCTCAAAACACTTCATTTGGGTAACATACATTTTGCACGTGATCAATGTCTCCCAAAGCTTTTATCAGGATGTCCCATTCTCGAGGAATTGCAAATAAAATACTTACGCCGGGCTACTCTTGTTTTGGAGGAAAATTTTCAATGCTTACCGAATTTGATCAGAGCAAACATTTCAGAAGTGAATTCTAGTGCCGCGAGTGTTCTCTTTAGTTTGCTTTGCGGGGCAAAATTTCTGTGTGTAGAACCGGTAAGAGCATTACACGACTCTTTCCAATAAATGTTTAAATGAAACTAGGCTTTATTTGATTTCTATCTTTTATAAATCACAGTGGTTCATAGGTTACATCAATTTCCCCACGTTTCAAAATCTAATCCACTTGGAACTTACTCTTAAGCATAAACGCAGTGAGAATTGGAAGTGGGTGATACAAGTGCTGAAACATTGTCCGAAACTTCAAAATCTGACCATTCATGAGGTTTTGTTTGTCTAAGATTTTCTTTTTTTACCTCAACAGTTTTTCACCTTTTTTATTTTATTTACAAAATATTTGAACTGTTGACAGGACTCCGGGAATGGAAATGAAGTTGTCGGTGATTGGATGGATCCAACAATTGTTCCTGAATGCCTTTCAACACATCTCAGAACATGCTTGCTTGAAGGCTTTAAAAACATGGAATGTGAGGTTCAATTTGCAAAATATATTATGCAGAATGCGAAAGTACTAAACACCATTTCAATTAAGACTGCCTCTTCCATAGATCTAAATGTTAAGTACCAAATGATATCGAAATTAGCTTCGTCGGCAAGGGCTTCAACAACATGTGAACTCTTATTTGATTGATGATGACAGTTATGGACTTAGGGCATAGTTGCAATAGTTCTATGTCTGCTTTTTTATTAGACTCTAACATATGCAATGCTAAGATTTAATGGTTTTCAAATTTTCAAGTATGTATTGGCTTTCATGTATTAAAGGGATGCTAGATTCTTTCAACATATTCATATCTTATCTGATTAATGATTTTCTTACATGAGTTGTATTGATGATTGATGAATGTCATTTTCTAGCAGTCTTGTGGACTTGTGGGAACGAGAAATGA
Protein sequence

>MS.gene056133.t1

MLPLRSFHLISSKAYNLHHSHDVNRFVYAAVQRGIENLNLKICNRVSFGLKLPLSIFSCRTLVVLHLHGLTANLSRVVVDFPLLKTLHLGNIHFARDQCLPKLLSGCPILEELQIKYLRRATLVLEENFQCLPNLIRANISEVNSSAASVLFSLLCGAKFLCVEPWFIGYINFPTFQNLIHLELTLKHKRSENWKWVIQVLKHCPKLQNLTIHEDSGNGNEVVVLWTCGNEK