AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39747

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39747.t1 MTR_7g115270 64.516 217 73 2 4 216 133 349 1.03e-85 259
MS.gene39747.t1 MTR_7g056420 67.580 219 42 3 1 215 118 311 1.64e-80 260
MS.gene39747.t1 MTR_7g056430 67.580 219 42 3 1 215 118 311 1.90e-80 260
MS.gene39747.t1 MTR_5g013500 54.000 200 86 3 27 220 116 315 2.46e-63 201
MS.gene39747.t1 MTR_7g056433 51.887 212 97 2 5 216 130 336 1.85e-61 197
MS.gene39747.t1 MTR_7g056417 56.442 163 59 3 1 156 1 158 1.37e-49 159
MS.gene39747.t1 MTR_7g098570 41.860 215 111 7 5 215 135 339 2.30e-38 138
MS.gene39747.t1 MTR_7g098510 40.909 220 108 9 4 215 132 337 6.61e-35 127
MS.gene39747.t1 MTR_3g036250 38.605 215 104 7 7 215 124 316 4.09e-34 125
MS.gene39747.t1 MTR_7g034120 39.806 206 108 8 10 212 64 256 1.74e-33 122
MS.gene39747.t1 MTR_3g040700 39.151 212 106 7 7 215 162 353 8.55e-33 123
MS.gene39747.t1 MTR_7g098480 39.352 216 115 8 4 215 132 335 6.84e-32 121
MS.gene39747.t1 MTR_7g033990 43.062 209 101 7 10 216 139 331 7.88e-32 120
MS.gene39747.t1 MTR_7g032370 35.814 215 111 6 7 216 108 300 3.57e-31 117
MS.gene39747.t1 MTR_7g007080 36.967 211 115 7 7 211 129 327 1.26e-29 114
MS.gene39747.t1 MTR_3g023630 35.455 220 123 8 1 215 119 324 2.47e-29 112
MS.gene39747.t1 MTR_7g033915 40.385 208 92 8 10 216 137 313 4.67e-29 112
MS.gene39747.t1 MTR_1g041245 38.636 220 111 9 7 216 129 334 7.95e-29 111
MS.gene39747.t1 MTR_5g008950 33.486 218 127 8 4 216 110 314 9.71e-29 111
MS.gene39747.t1 MTR_3g087260 38.532 218 114 8 6 216 200 404 7.86e-28 109
MS.gene39747.t1 MTR_3g087260 38.614 101 59 2 5 104 112 210 1.09e-11 63.9
MS.gene39747.t1 MTR_7g032380 35.047 214 96 8 7 216 130 304 6.31e-27 105
MS.gene39747.t1 MTR_3g082890 36.404 228 124 6 7 217 212 435 6.75e-27 107
MS.gene39747.t1 MTR_1g107385 35.780 218 120 8 7 215 166 372 1.13e-25 103
MS.gene39747.t1 MTR_5g008920 33.488 215 131 7 6 218 128 332 1.25e-25 102
MS.gene39747.t1 MTR_0492s0020 35.321 218 114 8 7 216 199 397 1.65e-25 103
MS.gene39747.t1 MTR_0543s0010 35.321 218 114 8 7 216 199 397 2.22e-25 102
MS.gene39747.t1 MTR_2g008320 33.178 214 133 5 6 217 172 377 7.15e-25 101
MS.gene39747.t1 MTR_3g108560 37.264 212 117 6 11 216 135 336 1.01e-23 97.8
MS.gene39747.t1 MTR_2g007500 31.982 222 122 6 7 211 121 330 1.25e-23 96.7
MS.gene39747.t1 MTR_2g007450 32.589 224 122 7 7 210 152 366 2.91e-23 96.7
MS.gene39747.t1 MTR_7g088260 33.023 215 131 5 5 216 206 410 5.34e-23 96.3
MS.gene39747.t1 MTR_3g107100 35.945 217 124 8 1 212 126 332 6.13e-23 95.9
MS.gene39747.t1 MTR_6g045333 33.636 220 131 6 5 216 181 393 8.18e-23 95.9
MS.gene39747.t1 MTR_7g056020 35.377 212 107 7 11 211 124 316 2.91e-22 94.7
MS.gene39747.t1 MTR_5g083890 33.937 221 123 8 7 215 142 351 4.30e-22 94.0
MS.gene39747.t1 MTR_3g071850 31.081 222 132 4 5 215 144 355 4.85e-22 94.4
MS.gene39747.t1 MTR_5g045170 31.651 218 133 5 5 216 131 338 5.85e-22 92.8
MS.gene39747.t1 MTR_7g034115 34.742 213 118 8 7 212 129 327 7.07e-22 92.4
MS.gene39747.t1 MTR_3g105060 33.019 212 122 8 5 215 131 323 8.12e-22 92.4
MS.gene39747.t1 MTR_1g053025 28.821 229 142 6 1 217 123 342 1.15e-21 92.0
MS.gene39747.t1 MTR_3g109982 36.279 215 120 8 7 216 220 422 2.32e-21 92.0
MS.gene39747.t1 MTR_3g026920 30.531 226 114 7 2 211 159 357 2.48e-21 91.3
MS.gene39747.t1 MTR_5g007410 29.680 219 141 5 5 216 143 355 3.84e-21 91.3
MS.gene39747.t1 MTR_2g008310 32.692 208 129 6 6 211 118 316 7.17e-21 90.1
MS.gene39747.t1 MTR_3g082890 31.818 264 122 7 7 216 132 391 9.03e-21 90.1
MS.gene39747.t1 MTR_7g056447 62.687 67 25 0 1 67 119 185 4.81e-20 86.3
MS.gene39747.t1 MTR_3g107120 34.135 208 124 6 7 211 142 339 4.94e-20 87.8
MS.gene39747.t1 MTR_7g081290 42.857 126 64 4 98 216 84 208 8.47e-20 85.1
MS.gene39747.t1 MTR_3g108150 34.513 226 121 8 3 216 124 334 9.56e-20 86.7
MS.gene39747.t1 MTR_3g467400 32.420 219 103 9 5 215 132 313 2.29e-19 85.5
MS.gene39747.t1 MTR_7g075820 28.505 214 136 6 7 215 142 343 2.71e-19 85.5
MS.gene39747.t1 MTR_0009s0080 30.137 219 139 5 5 216 136 347 1.36e-18 83.6
MS.gene39747.t1 MTR_7g056277 33.168 202 118 8 11 211 385 570 1.68e-18 84.0
MS.gene39747.t1 MTR_7g060470 31.222 221 128 9 8 212 126 338 1.94e-18 83.2
MS.gene39747.t1 MTR_7g056287 33.168 202 118 8 11 211 129 314 2.21e-18 82.8
MS.gene39747.t1 MTR_5g073370 32.367 207 125 7 5 208 126 320 2.25e-18 82.8
MS.gene39747.t1 MTR_5g012840 31.100 209 92 6 10 216 109 267 2.59e-18 82.0
MS.gene39747.t1 MTR_7g114710 32.850 207 93 8 15 212 141 310 2.73e-18 82.4
MS.gene39747.t1 MTR_3g107160 31.905 210 116 7 7 206 134 326 3.82e-18 82.4
MS.gene39747.t1 MTR_4g098590 32.883 222 113 9 7 211 127 329 6.13e-18 81.6
MS.gene39747.t1 MTR_4g080610 33.158 190 111 5 35 216 124 305 7.67e-18 81.3
MS.gene39747.t1 MTR_2g007400 32.547 212 121 8 10 211 148 347 1.03e-17 81.3
MS.gene39747.t1 MTR_6g022500 29.808 208 137 5 6 212 220 419 1.23e-17 81.3
MS.gene39747.t1 MTR_7g026500 30.876 217 127 9 4 212 139 340 1.98e-17 80.1
MS.gene39747.t1 MTR_7g083740 31.606 193 107 7 29 211 135 312 1.57e-16 77.4
MS.gene39747.t1 MTR_3g115430 56.452 62 26 1 151 212 11 71 1.61e-16 73.2
MS.gene39747.t1 MTR_7g034110 44.554 101 47 4 121 215 194 291 1.86e-16 77.0
MS.gene39747.t1 MTR_1g108820 29.907 214 127 7 5 206 121 323 3.91e-16 76.6
MS.gene39747.t1 MTR_2g020180 32.571 175 91 5 55 216 5 165 4.69e-16 74.3
MS.gene39747.t1 MTR_3g099830 29.954 217 124 8 7 211 118 318 4.76e-16 76.3
MS.gene39747.t1 MTR_1g108800 32.569 218 114 7 1 206 84 280 1.84e-15 74.3
MS.gene39747.t1 MTR_1g085120 29.665 209 130 6 11 212 216 414 2.64e-15 74.3
MS.gene39747.t1 MTR_3g108560 38.150 173 91 6 11 177 135 297 2.69e-15 73.6
MS.gene39747.t1 MTR_1g085120 29.665 209 130 6 11 212 291 489 2.91e-15 74.3
MS.gene39747.t1 MTR_7g055943 31.944 216 126 7 6 214 159 360 5.14e-15 73.6
MS.gene39747.t1 MTR_5g073420 29.493 217 125 8 1 212 127 320 3.08e-14 71.2
MS.gene39747.t1 MTR_5g063950 27.230 213 139 6 10 216 107 309 3.57e-14 70.9
MS.gene39747.t1 MTR_5g073340 28.571 210 134 7 4 205 99 300 6.08e-14 69.7
MS.gene39747.t1 MTR_4g039440 30.952 210 135 6 6 211 148 351 7.42e-14 70.1
MS.gene39747.t1 MTR_6g013160 31.980 197 107 9 5 177 159 352 1.38e-13 69.3
MS.gene39747.t1 MTR_5g058100 32.195 205 116 9 10 206 131 320 1.52e-13 68.9
MS.gene39747.t1 MTR_2g007360 28.829 222 112 8 16 211 115 316 1.56e-13 68.9
MS.gene39747.t1 MTR_5g031970 29.817 218 113 8 5 216 120 303 2.24e-13 68.6
MS.gene39747.t1 MTR_3g110010 35.714 182 100 8 7 183 220 389 2.85e-13 68.6
MS.gene39747.t1 MTR_5g039470 29.864 221 138 8 5 216 99 311 3.04e-13 67.8
MS.gene39747.t1 MTR_6g040270 27.830 212 141 7 1 212 122 321 1.51e-12 66.2
MS.gene39747.t1 MTR_3g113785 46.377 69 30 1 155 216 14 82 1.58e-12 62.0
MS.gene39747.t1 MTR_2g005990 28.372 215 133 7 6 211 137 339 2.42e-12 65.5
MS.gene39747.t1 MTR_7g007340 29.384 211 126 8 7 211 108 301 3.98e-12 64.7
MS.gene39747.t1 MTR_8g085430 51.562 64 25 2 159 216 213 276 5.52e-12 64.3
MS.gene39747.t1 MTR_1g108820 30.270 185 110 6 5 177 121 298 8.19e-12 63.9
MS.gene39747.t1 MTR_6g022360 28.507 221 132 7 6 215 149 354 1.02e-11 63.9
MS.gene39747.t1 MTR_1g066830 27.778 216 141 6 6 215 126 332 1.21e-11 63.5
MS.gene39747.t1 MTR_7g021990 29.384 211 136 7 7 211 164 367 1.39e-11 63.5
MS.gene39747.t1 MTR_7g021950 29.384 211 136 7 7 211 164 367 1.42e-11 63.5
MS.gene39747.t1 MTR_7g022105 28.095 210 140 5 7 211 165 368 1.66e-11 63.2
MS.gene39747.t1 MTR_5g061410 29.240 171 111 5 10 177 104 267 1.96e-11 62.4
MS.gene39747.t1 MTR_5g058000 31.019 216 119 8 5 212 124 317 2.35e-11 62.8
MS.gene39747.t1 MTR_1g085120 31.034 174 105 5 11 177 303 468 2.92e-11 62.4
MS.gene39747.t1 MTR_1089s0010 27.536 207 129 7 10 212 130 319 3.67e-11 62.0
MS.gene39747.t1 MTR_7g075800 23.140 242 143 8 7 215 141 372 9.74e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGCAATTCCTCTAAAA+TGG 0.161153 7.1:+45544091 None:intergenic
CTCAAAACATGCTTGCTTAA+AGG 0.172644 7.1:-45543402 MS.gene39747:CDS
ATATTTATTTGTACATAATA+AGG 0.228390 7.1:-45544066 MS.gene39747:CDS
ACACTTGTCTGGTGTACTTT+TGG 0.230385 7.1:-45544153 MS.gene39747:CDS
AGTTGTGTTGAAAGGCATTC+TGG 0.307205 7.1:+45543423 None:intergenic
TATATCATCCAGCTTCTATC+TGG 0.335498 7.1:-45544119 MS.gene39747:CDS
TCTCACAATGATTACGCTTA+AGG 0.361402 7.1:+45543652 None:intergenic
TCAGCATCTGCGTGCAGAAT+TGG 0.380986 7.1:-45543916 MS.gene39747:intron
TTATGCTCACTTTGCTCTGC+AGG 0.382170 7.1:-45543947 MS.gene39747:CDS
AGGCATTCTGGAATATTTGC+TGG 0.397575 7.1:+45543435 None:intergenic
AGACCTTTCTCAACTGGTTG+TGG 0.399921 7.1:-45544198 MS.gene39747:CDS
TCAAAATCTTACCATTCATC+AGG 0.400799 7.1:-45543586 MS.gene39747:intron
AGTGAAAGACCTTTCTCAAC+TGG 0.408908 7.1:-45544204 MS.gene39747:CDS
TGTTGACAGGACTTGGAGAA+TGG 0.438134 7.1:-45543486 MS.gene39747:intron
GCTTGCAATTCCTCTAAAAT+GGG 0.458474 7.1:+45544092 None:intergenic
GATTGCGGAACTTAAGATGT+TGG 0.471118 7.1:+45543694 None:intergenic
AGAGGAAGTTGTGGATAGTT+GGG 0.474055 7.1:-45543463 MS.gene39747:CDS
GAGAGGAAGTTGTGGATAGT+TGG 0.479744 7.1:-45543464 MS.gene39747:CDS
AACCTCAATCTTGAAATGTC+CGG 0.492837 7.1:-45544296 None:intergenic
AGCGTAATCATTGTGAGAAG+TGG 0.507662 7.1:-45543647 MS.gene39747:CDS
CATCAATAAAACCTGATGAA+TGG 0.519118 7.1:+45543575 None:intergenic
TGGGACATCCAGATAGAAGC+TGG 0.524755 7.1:+45544111 None:intergenic
TCGTTGTTCTTCATTTGCAA+CGG 0.536924 7.1:-45544232 MS.gene39747:CDS
AATCCACAACCAGTTGAGAA+AGG 0.541657 7.1:+45544195 None:intergenic
TATTTGTACATAATAAGGAA+TGG 0.542284 7.1:-45544061 MS.gene39747:CDS
ATCATTGTGAGAAGTGGATC+TGG 0.545999 7.1:-45543641 MS.gene39747:CDS
TATGCTCACTTTGCTCTGCA+GGG 0.565940 7.1:-45543946 MS.gene39747:CDS
CTTAAGGATAAGCTCCATGT+TGG 0.567493 7.1:+45543668 None:intergenic
GGAGAATGGAGAGGAAGTTG+TGG 0.577606 7.1:-45543472 MS.gene39747:CDS
TGCGGAACTTAAGATGTTGG+AGG 0.590690 7.1:+45543697 None:intergenic
ATGTTTGCAGTGATCAACTT+CGG 0.596642 7.1:+45543996 None:intergenic
CAATCTTGAAATGTCCGGCA+TGG 0.608926 7.1:-45544291 None:intergenic
ACGAGGTAATGTTACCATGC+CGG 0.615120 7.1:+45544277 None:intergenic
GCTCCATGTTGGTTAGATTG+CGG 0.616847 7.1:+45543679 None:intergenic
GGAAGTTGTGGATAGTTGGG+TGG 0.619960 7.1:-45543460 MS.gene39747:CDS
ACAGGACTTGGAGAATGGAG+AGG 0.667756 7.1:-45543481 MS.gene39747:intron
GTTCCGCAATCTAACCAACA+TGG 0.671128 7.1:-45543682 MS.gene39747:CDS
TTGCAAATGAAGAACAACGA+GGG 0.693329 7.1:+45544235 None:intergenic
AAGATGTTGGAGGTAACATG+TGG 0.703188 7.1:+45543707 None:intergenic
CTACAATTGAAAATGCTACG+AGG 0.748964 7.1:+45544260 None:intergenic
GTTGCAAATGAAGAACAACG+AGG 0.797581 7.1:+45544234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATTTGTACATAATA+AGG - chr7.1:45543409-45543428 MS.gene39747:CDS 10.0%
!!! GTTAATTTTCTTTTTAATAA+AGG - chr7.1:45543595-45543614 MS.gene39747:CDS 10.0%
!! TATATATCAAATTGGAAAAT+AGG + chr7.1:45543957-45543976 None:intergenic 15.0%
!! ATAAAAATTGAATTGTTGAC+AGG - chr7.1:45543976-45543995 MS.gene39747:CDS 20.0%
!! TAAAAAGAAAAGAAAAAGCT+AGG + chr7.1:45543926-45543945 None:intergenic 20.0%
!! TATTTGTACATAATAAGGAA+TGG - chr7.1:45543414-45543433 MS.gene39747:CDS 20.0%
!! TTATTTGATTGATGAAAGTT+AGG - chr7.1:45544265-45544284 MS.gene39747:CDS 20.0%
! CAGAATTGGTAAGAATATTA+TGG - chr7.1:45543573-45543592 MS.gene39747:intron 25.0%
! TAAGAATTTACATGTTGATG+AGG + chr7.1:45544248-45544267 None:intergenic 25.0%
!! AAGCTAGTTTCATCAAAATT+TGG + chr7.1:45544213-45544232 None:intergenic 25.0%
!! TAACTTTTGTAAATCACAAC+AGG - chr7.1:45543745-45543764 MS.gene39747:intron 25.0%
!!! ATGGTAAGATTTTGAAGTTT+AGG + chr7.1:45543884-45543903 None:intergenic 25.0%
ATCCTACCTAGTATCAATAA+GGG + chr7.1:45543705-45543724 None:intergenic 30.0%
CATCAATAAAACCTGATGAA+TGG + chr7.1:45543903-45543922 None:intergenic 30.0%
CTTTAACCCTTATTGATACT+AGG - chr7.1:45543696-45543715 MS.gene39747:CDS 30.0%
TCAAAATCTTACCATTCATC+AGG - chr7.1:45543889-45543908 MS.gene39747:intron 30.0%
! AAATTGGAAAATAGGTGTTG+AGG + chr7.1:45543949-45543968 None:intergenic 30.0%
!!! ATGTTTTGAGTTGTGTTGAA+AGG + chr7.1:45544063-45544082 None:intergenic 30.0%
AACCCTTATTGATACTAGGT+AGG - chr7.1:45543700-45543719 MS.gene39747:CDS 35.0%
ATGTTTGCAGTGATCAACTT+CGG + chr7.1:45543482-45543501 None:intergenic 35.0%
ATTGAATTGTTGACAGGACT+TGG - chr7.1:45543982-45544001 MS.gene39747:CDS 35.0%
CTACAATTGAAAATGCTACG+AGG + chr7.1:45543218-45543237 None:intergenic 35.0%
CTCAAAAAACTACACTTGTC+TGG - chr7.1:45543311-45543330 MS.gene39747:intron 35.0%
CTCAAAACATGCTTGCTTAA+AGG - chr7.1:45544073-45544092 MS.gene39747:CDS 35.0%
GATCCTACCTAGTATCAATA+AGG + chr7.1:45543706-45543725 None:intergenic 35.0%
GTGCTTGACATTTGTATCTA+CGG + chr7.1:45544191-45544210 None:intergenic 35.0%
TATATCATCCAGCTTCTATC+TGG - chr7.1:45543356-45543375 MS.gene39747:intron 35.0%
TCACACATATCATACTCGAA+GGG + chr7.1:45543640-45543659 None:intergenic 35.0%
TCGTTGTTCTTCATTTGCAA+CGG - chr7.1:45543243-45543262 MS.gene39747:intron 35.0%
TCTCACAATGATTACGCTTA+AGG + chr7.1:45543826-45543845 None:intergenic 35.0%
TTGCAAATGAAGAACAACGA+GGG + chr7.1:45543243-45543262 None:intergenic 35.0%
! AGCTTGCAATTCCTCTAAAA+TGG + chr7.1:45543387-45543406 None:intergenic 35.0%
! CTCGTAGCATTTTCAATTGT+AGG - chr7.1:45543216-45543235 MS.gene39747:intron 35.0%
!! GCTTGCAATTCCTCTAAAAT+GGG + chr7.1:45543386-45543405 None:intergenic 35.0%
!!! AAGTGTAGTTTTTTGAGGAG+AGG + chr7.1:45543308-45543327 None:intergenic 35.0%
!!! CAGACAAGTGTAGTTTTTTG+AGG + chr7.1:45543313-45543332 None:intergenic 35.0%
AAGATGTTGGAGGTAACATG+TGG + chr7.1:45543771-45543790 None:intergenic 40.0%
AATCCACAACCAGTTGAGAA+AGG + chr7.1:45543283-45543302 None:intergenic 40.0%
AGAGGAAGTTGTGGATAGTT+GGG - chr7.1:45544012-45544031 MS.gene39747:CDS 40.0%
AGCGTAATCATTGTGAGAAG+TGG - chr7.1:45543828-45543847 MS.gene39747:intron 40.0%
AGTGAAAGACCTTTCTCAAC+TGG - chr7.1:45543271-45543290 MS.gene39747:intron 40.0%
ATCATTGTGAGAAGTGGATC+TGG - chr7.1:45543834-45543853 MS.gene39747:intron 40.0%
CTTAAGGATAAGCTCCATGT+TGG + chr7.1:45543810-45543829 None:intergenic 40.0%
GACATTTGTATCTACGGAAG+AGG + chr7.1:45544185-45544204 None:intergenic 40.0%
GATTGCGGAACTTAAGATGT+TGG + chr7.1:45543784-45543803 None:intergenic 40.0%
GTCACACATATCATACTCGA+AGG + chr7.1:45543641-45543660 None:intergenic 40.0%
GTTGCAAATGAAGAACAACG+AGG + chr7.1:45543244-45543263 None:intergenic 40.0%
! ACACTTGTCTGGTGTACTTT+TGG - chr7.1:45543322-45543341 MS.gene39747:intron 40.0%
! ATCTGGATGTCCCATTTTAG+AGG - chr7.1:45543373-45543392 MS.gene39747:intron 40.0%
! GAAACTAGCTTCGTGTACAA+GGG - chr7.1:45544222-45544241 MS.gene39747:CDS 40.0%
! TGAAACTAGCTTCGTGTACA+AGG - chr7.1:45544221-45544240 MS.gene39747:CDS 40.0%
!! AGGCATTCTGGAATATTTGC+TGG + chr7.1:45544043-45544062 None:intergenic 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG + chr7.1:45544055-45544074 None:intergenic 40.0%
ACGAGGTAATGTTACCATGC+CGG + chr7.1:45543201-45543220 None:intergenic 45.0%
AGACCTTTCTCAACTGGTTG+TGG - chr7.1:45543277-45543296 MS.gene39747:intron 45.0%
GAGAGGAAGTTGTGGATAGT+TGG - chr7.1:45544011-45544030 MS.gene39747:CDS 45.0%
GTTCCGCAATCTAACCAACA+TGG - chr7.1:45543793-45543812 MS.gene39747:intron 45.0%
TATGCTCACTTTGCTCTGCA+GGG - chr7.1:45543529-45543548 MS.gene39747:intron 45.0%
TGCGGAACTTAAGATGTTGG+AGG + chr7.1:45543781-45543800 None:intergenic 45.0%
TGTTGACAGGACTTGGAGAA+TGG - chr7.1:45543989-45544008 MS.gene39747:CDS 45.0%
TTATGCTCACTTTGCTCTGC+AGG - chr7.1:45543528-45543547 MS.gene39747:intron 45.0%
! GCTCCATGTTGGTTAGATTG+CGG + chr7.1:45543799-45543818 None:intergenic 45.0%
!!! AATTTTTATATATATCAAAT+TGG + chr7.1:45543965-45543984 None:intergenic 5.0%
ACAGGACTTGGAGAATGGAG+AGG - chr7.1:45543994-45544013 MS.gene39747:CDS 50.0%
GGAAGTTGTGGATAGTTGGG+TGG - chr7.1:45544015-45544034 MS.gene39747:CDS 50.0%
GGAGAATGGAGAGGAAGTTG+TGG - chr7.1:45544003-45544022 MS.gene39747:CDS 50.0%
TCAGCATCTGCGTGCAGAAT+TGG - chr7.1:45543559-45543578 MS.gene39747:intron 50.0%
TGGGACATCCAGATAGAAGC+TGG + chr7.1:45543367-45543386 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 45543194 45544303 45543194 ID=MS.gene39747
chr7.1 mRNA 45543194 45544303 45543194 ID=MS.gene39747.t1;Parent=MS.gene39747
chr7.1 exon 45543917 45544303 45543917 ID=MS.gene39747.t1.exon1;Parent=MS.gene39747.t1
chr7.1 CDS 45543917 45544303 45543917 ID=cds.MS.gene39747.t1;Parent=MS.gene39747.t1
chr7.1 exon 45543587 45543730 45543587 ID=MS.gene39747.t1.exon2;Parent=MS.gene39747.t1
chr7.1 CDS 45543587 45543730 45543587 ID=cds.MS.gene39747.t1;Parent=MS.gene39747.t1
chr7.1 exon 45543385 45543499 45543385 ID=MS.gene39747.t1.exon3;Parent=MS.gene39747.t1
chr7.1 CDS 45543385 45543499 45543385 ID=cds.MS.gene39747.t1;Parent=MS.gene39747.t1
chr7.1 exon 45543194 45543210 45543194 ID=MS.gene39747.t1.exon4;Parent=MS.gene39747.t1
chr7.1 CDS 45543194 45543210 45543194 ID=cds.MS.gene39747.t1;Parent=MS.gene39747.t1
Gene Sequence

>MS.gene39747

ATGTCCGGCATGGTAACATTACCTCGTAGCATTTTCAATTGTAGGACCCTCGTTGTTCTTCATTTGCAACGGATTACAGTGAAAGACCTTTCTCAACTGGTTGTGGATTTTCCTCTCCTCAAAAAACTACACTTGTCTGGTGTACTTTTGGAACGTGCTGAATATATCATCCAGCTTCTATCTGGATGTCCCATTTTAGAGGAATTGCAAGCTGAATATTTATTTGTACATAATAAGGAATGGCTTGTTTCAATGAATTTTATACGAGAAAAGCTTCGAAGCTTACCGAAGTTGATCACTGCAAACATTACTAAATCGACTCATTCTTTGACGTTTATGCTCACTTTGCTCTGCAGGGCAGAGTCTCAGCATCTGCGTGCAGAATTGGTAAGAATATTATGGTTAATTTTCTTTTTAATAAAGGTTGTTAATTATAGTTTTTGCCCTTCGAGTATGATATGTGTGACGATTCTGTGTTACGAATTTGAGTTATGATCTTGCACTTTAACCCTTATTGATACTAGGTAGGATCTAGTTTTCGAGCGTATTTCTAACTTTTGTAAATCACAACAGGCCACATGTTACCTCCAACATCTTAAGTTCCGCAATCTAACCAACATGGAGCTTATCCTTAAGCGTAATCATTGTGAGAAGTGGATCTGGTTGCTAGAAGTGCTGAAACGTTGTCCTAAACTTCAAAATCTTACCATTCATCAGGTTTTATTGATGCCTAGCTTTTTCTTTTCTTTTTACCTCAACACCTATTTTCCAATTTGATATATATAAAAATTGAATTGTTGACAGGACTTGGAGAATGGAGAGGAAGTTGTGGATAGTTGGGTGGATCCAGCAAATATTCCAGAATGCCTTTCAACACAACTCAAAACATGCTTGCTTAAAGGCTATAAATGCACAGAATGTGAGCTTCAATTTGCAAAATATATTATGCATAATTCAAAAGTACTGAACACAATTTCAATCAAGAGTGCCTCTTCCGTAGATACAAATGTCAAGCACCAAATTTTGATGAAACTAGCTTCGTGTACAAGGGCCTCATCAACATGTAAATTCTTATTTGATTGATGAAAGTTAGGTCATAGTTTACAATAG
Protein sequence

>MS.gene39747.t1

MSGMVTLPRSIFNCRTLVVLHLQRITVKDLSQLVVDFPLLKKLHLSGVLLERAEYIIQLLSGCPILEELQAEYLFVHNKEWLVSMNFIREKLRSLPKLITANITKSTHSLTFMLTLLCRAESQHLRAELATCYLQHLKFRNLTNMELILKRNHCEKWIWLLEVLKRCPKLQNLTIHQDLENGEEVVDSWVDPANIPECLSTQLKTCLLKGYKCTECHSLQ