AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32641


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32641.t1 MTR_3g107120 94.942 257 13 0 1 257 1 257 4.18e-176 491
MS.gene32641.t1 MTR_3g107160 52.569 253 103 3 9 257 10 249 2.39e-73 229
MS.gene32641.t1 MTR_3g107140 57.789 199 81 1 19 217 2 197 5.56e-68 209
MS.gene32641.t1 MTR_3g107100 52.174 253 103 4 9 257 11 249 3.15e-66 211
MS.gene32641.t1 MTR_4g098590 41.797 256 125 6 11 254 1 244 1.50e-45 156
MS.gene32641.t1 MTR_2g007450 41.818 275 127 8 1 254 8 270 5.13e-45 156
MS.gene32641.t1 MTR_1g053025 39.689 257 132 6 9 254 2 246 3.21e-39 140
MS.gene32641.t1 MTR_2g007400 38.258 264 136 6 9 257 12 263 4.68e-38 137
MS.gene32641.t1 MTR_2g007500 39.921 253 117 6 9 254 14 238 6.78e-38 135
MS.gene32641.t1 MTR_5g083890 38.433 268 132 7 9 255 6 261 2.11e-37 137
MS.gene32641.t1 MTR_1g107385 40.449 267 125 9 9 255 32 284 7.81e-36 132
MS.gene32641.t1 MTR_2g005990 34.615 260 145 6 9 255 6 253 2.76e-28 111
MS.gene32641.t1 MTR_3g026920 33.212 274 127 7 9 254 19 264 3.17e-28 111
MS.gene32641.t1 MTR_3g108150 35.827 254 133 6 7 255 11 239 4.15e-28 110
MS.gene32641.t1 MTR_2g008310 34.866 261 136 7 9 257 2 240 3.36e-27 108
MS.gene32641.t1 MTR_3g099830 32.950 261 132 7 5 257 8 233 3.88e-27 108
MS.gene32641.t1 MTR_1g041245 34.496 258 133 10 9 256 11 242 4.71e-27 107
MS.gene32641.t1 MTR_2g008320 33.708 267 149 6 2 257 45 294 1.79e-26 107
MS.gene32641.t1 MTR_7g056433 39.512 205 97 8 9 205 12 197 9.13e-26 104
MS.gene32641.t1 MTR_3g023630 39.130 207 101 5 7 207 6 193 1.03e-25 103
MS.gene32641.t1 MTR_7g034090 45.806 155 66 4 9 160 4 143 1.05e-25 104
MS.gene32641.t1 MTR_7g056447 38.140 215 108 6 1 210 1 195 4.75e-25 100
MS.gene32641.t1 MTR_2g007360 33.077 260 124 9 5 255 8 226 9.82e-25 101
MS.gene32641.t1 MTR_3g105060 34.468 235 124 7 9 235 14 226 2.10e-24 100
MS.gene32641.t1 MTR_7g075820 32.963 270 143 7 9 255 6 260 3.53e-24 100
MS.gene32641.t1 MTR_5g073420 33.725 255 135 8 9 255 11 239 6.56e-24 99.4
MS.gene32641.t1 MTR_7g075800 31.095 283 143 8 9 257 9 273 7.43e-24 100
MS.gene32641.t1 MTR_7g032380 39.234 209 94 10 9 207 11 196 1.06e-23 98.6
MS.gene32641.t1 MTR_7g026500 32.812 256 140 8 8 253 13 246 4.67e-22 94.4
MS.gene32641.t1 MTR_3g040700 37.681 207 102 7 9 207 43 230 1.25e-21 93.6
MS.gene32641.t1 MTR_7g007340 33.984 256 125 6 5 257 9 223 1.56e-21 92.4
MS.gene32641.t1 MTR_7g115270 34.016 244 123 7 9 233 12 236 1.69e-21 92.8
MS.gene32641.t1 MTR_7g098570 33.992 253 136 8 9 254 20 248 1.82e-21 93.2
MS.gene32641.t1 MTR_6g045333 34.109 258 146 8 2 253 54 293 3.45e-21 92.4
MS.gene32641.t1 MTR_7g032370 32.035 231 128 7 21 247 2 207 4.01e-21 91.3
MS.gene32641.t1 MTR_7g114710 36.893 206 99 6 9 205 13 196 7.45e-21 90.5
MS.gene32641.t1 MTR_7g056420 34.434 212 88 7 1 207 1 166 8.12e-21 92.0
MS.gene32641.t1 MTR_6g011460 34.252 254 134 9 9 253 46 275 8.37e-21 90.9
MS.gene32641.t1 MTR_1g066830 32.669 251 143 7 9 253 8 238 9.40e-21 90.5
MS.gene32641.t1 MTR_7g056430 34.434 212 88 7 1 207 1 166 1.03e-20 91.7
MS.gene32641.t1 MTR_7g098510 33.074 257 143 7 4 254 13 246 1.55e-20 90.1
MS.gene32641.t1 MTR_5g061680 37.313 201 105 6 9 204 11 195 1.70e-20 89.4
MS.gene32641.t1 MTR_7g083740 33.621 232 107 7 9 233 17 208 2.25e-20 89.4
MS.gene32641.t1 MTR_7g034110 31.250 240 134 6 7 236 9 227 2.92e-20 89.0
MS.gene32641.t1 MTR_3g450920 42.767 159 73 5 66 220 58 202 3.56e-20 86.3
MS.gene32641.t1 MTR_8g085430 34.419 215 103 7 9 207 11 203 4.52e-20 88.2
MS.gene32641.t1 MTR_5g073340 32.283 254 131 6 3 255 2 215 6.71e-20 87.4
MS.gene32641.t1 MTR_0009s0080 33.735 249 139 8 11 253 20 248 7.31e-20 88.6
MS.gene32641.t1 MTR_5g045510 31.325 249 140 8 11 253 14 237 1.00e-19 87.4
MS.gene32641.t1 MTR_5g058100 32.824 262 144 7 1 253 1 239 1.58e-19 87.0
MS.gene32641.t1 MTR_0492s0020 36.170 235 107 9 9 233 86 287 1.75e-19 87.4
MS.gene32641.t1 MTR_0543s0010 36.170 235 107 9 9 233 86 287 1.86e-19 87.4
MS.gene32641.t1 MTR_5g058000 33.992 253 136 9 9 253 8 237 2.33e-19 86.7
MS.gene32641.t1 MTR_5g073370 31.298 262 144 8 6 255 2 239 2.88e-19 86.3
MS.gene32641.t1 MTR_1g085120 33.071 254 142 10 9 253 179 413 6.18e-19 85.9
MS.gene32641.t1 MTR_1g085120 33.071 254 142 10 9 253 92 326 7.84e-19 85.5
MS.gene32641.t1 MTR_1g085120 33.071 254 142 10 9 253 167 401 9.09e-19 85.5
MS.gene32641.t1 MTR_7g088260 31.707 246 142 7 9 252 91 312 1.07e-18 85.1
MS.gene32641.t1 MTR_3g036250 35.897 234 121 9 9 233 5 218 1.26e-18 84.3
MS.gene32641.t1 MTR_4g134150 31.776 214 105 7 9 212 14 196 7.44e-18 80.1
MS.gene32641.t1 MTR_5g007410 31.154 260 141 11 11 257 28 262 8.27e-18 82.8
MS.gene32641.t1 MTR_7g007370 30.385 260 119 6 1 257 9 209 1.32e-17 81.3
MS.gene32641.t1 MTR_3g467400 29.588 267 149 7 9 256 3 249 1.53e-17 81.3
MS.gene32641.t1 MTR_7g055943 34.583 240 131 9 2 233 33 254 1.55e-17 81.6
MS.gene32641.t1 MTR_5g045170 30.924 249 143 7 11 253 16 241 2.17e-17 81.3
MS.gene32641.t1 MTR_3g087260 31.513 238 123 5 1 234 1 202 2.45e-17 81.3
MS.gene32641.t1 MTR_3g082890 31.250 224 118 6 5 217 93 291 3.45e-17 80.9
MS.gene32641.t1 MTR_4g039440 33.203 256 135 10 9 253 34 264 3.53e-17 80.5
MS.gene32641.t1 MTR_5g008920 30.924 249 150 6 10 256 13 241 4.24e-17 80.1
MS.gene32641.t1 MTR_3g082890 31.111 225 119 6 5 218 13 212 4.60e-17 80.5
MS.gene32641.t1 MTR_6g040270 31.034 261 142 9 5 253 4 238 9.48e-17 79.3
MS.gene32641.t1 MTR_3g108560 32.609 230 124 6 9 233 20 223 9.54e-17 78.6
MS.gene32641.t1 MTR_4g032730 30.804 224 127 7 2 211 8 217 1.58e-16 79.0
MS.gene32641.t1 MTR_3g108560 32.609 230 124 6 9 233 20 223 1.96e-16 78.2
MS.gene32641.t1 MTR_1089s0010 32.558 258 140 9 5 253 4 236 2.05e-16 78.2
MS.gene32641.t1 MTR_6g022360 34.335 233 114 9 9 233 43 244 2.48e-16 78.2
MS.gene32641.t1 MTR_7g098480 33.969 262 135 8 4 255 13 246 2.58e-16 78.2
MS.gene32641.t1 MTR_1g108820 31.250 256 147 9 9 255 8 243 4.33e-16 77.4
MS.gene32641.t1 MTR_8g468810 33.824 204 118 6 7 203 23 216 4.67e-16 76.6
MS.gene32641.t1 MTR_8g468810 33.824 204 118 6 7 203 23 216 5.72e-16 76.6
MS.gene32641.t1 MTR_8g468810 33.824 204 118 6 7 203 23 216 6.18e-16 76.6
MS.gene32641.t1 MTR_7g056287 31.855 248 153 7 9 254 3 236 6.52e-16 76.6
MS.gene32641.t1 MTR_8g468810 33.824 204 118 6 7 203 23 216 7.40e-16 76.6
MS.gene32641.t1 MTR_8g468810 33.990 203 117 6 7 202 23 215 8.37e-16 76.6
MS.gene32641.t1 MTR_7g056277 31.855 248 153 7 9 254 259 492 9.92e-16 76.6
MS.gene32641.t1 MTR_8g014160 32.692 208 115 9 9 203 41 236 1.01e-15 76.6
MS.gene32641.t1 MTR_1g108820 31.250 256 147 9 9 255 8 243 1.03e-15 75.9
MS.gene32641.t1 MTR_7g034115 35.319 235 110 10 9 231 11 215 1.36e-15 75.9
MS.gene32641.t1 MTR_2g007530 34.595 185 79 4 9 163 19 191 1.57e-15 75.5
MS.gene32641.t1 MTR_7g033990 30.627 271 132 12 9 257 11 247 3.06e-15 75.1
MS.gene32641.t1 MTR_8g058965 33.333 219 108 10 9 204 13 216 3.96e-15 74.7
MS.gene32641.t1 MTR_1g108800 31.660 259 110 7 9 256 8 210 8.98e-15 73.2
MS.gene32641.t1 MTR_8g062270 30.348 201 127 7 9 202 16 210 9.04e-15 73.6
MS.gene32641.t1 MTR_7g007080 30.435 253 155 7 9 254 4 242 1.43e-14 72.8
MS.gene32641.t1 MTR_5g084070 32.870 216 108 7 9 215 13 200 1.96e-14 72.8
MS.gene32641.t1 MTR_3g095600 31.200 250 124 9 9 251 4 212 2.40e-14 71.6
MS.gene32641.t1 MTR_8g062080 33.333 213 113 11 1 202 15 209 2.70e-14 72.4
MS.gene32641.t1 MTR_1g492880 36.607 112 55 2 9 117 6 104 3.54e-14 67.4
MS.gene32641.t1 MTR_5g008950 30.962 239 133 8 11 242 1 214 3.70e-14 71.6
MS.gene32641.t1 MTR_5g031970 28.679 265 143 8 2 255 10 239 4.56e-14 71.2
MS.gene32641.t1 MTR_6g044560 29.644 253 134 8 9 230 178 417 8.27e-14 71.2
MS.gene32641.t1 MTR_6g044572 29.644 253 134 8 9 230 2 241 8.90e-14 70.5
MS.gene32641.t1 MTR_3g110010 33.663 202 107 5 6 202 10 189 2.30e-13 69.7
MS.gene32641.t1 MTR_8g058970 31.278 227 122 10 9 211 19 235 2.50e-13 69.7
MS.gene32641.t1 MTR_3g109982 33.498 203 108 5 6 203 10 190 2.59e-13 69.7
MS.gene32641.t1 MTR_7g033915 32.645 242 102 13 7 233 9 204 2.79e-13 68.9
MS.gene32641.t1 MTR_8g467800 30.638 235 142 8 9 238 20 238 3.00e-13 68.9
MS.gene32641.t1 MTR_2g036470 28.352 261 158 6 2 253 7 247 3.18e-13 68.9
MS.gene32641.t1 MTR_7g033945 33.333 186 89 8 7 179 9 172 3.38e-13 66.6
MS.gene32641.t1 MTR_8g468840 33.333 231 117 10 2 218 7 214 3.63e-13 68.9
MS.gene32641.t1 MTR_7g060470 29.740 269 151 8 9 254 3 256 3.92e-13 68.9
MS.gene32641.t1 MTR_4g056040 30.041 243 136 8 1 215 1 237 5.34e-13 68.6
MS.gene32641.t1 MTR_8g467800 30.638 235 142 8 9 238 20 238 6.15e-13 68.2
MS.gene32641.t1 MTR_8g062010 30.769 208 119 10 1 200 1 191 7.63e-13 68.2
MS.gene32641.t1 MTR_8g014290 34.641 153 91 5 9 155 10 159 8.66e-13 65.1
MS.gene32641.t1 MTR_4g093690 32.512 203 107 7 9 201 18 200 9.10e-13 67.0
MS.gene32641.t1 MTR_6g022500 30.120 249 148 9 9 251 101 329 1.61e-12 67.0
MS.gene32641.t1 MTR_7g056280 33.514 185 106 4 10 190 7 178 1.95e-12 67.0
MS.gene32641.t1 MTR_1g492880 41.237 97 41 2 9 102 6 89 2.66e-12 62.0
MS.gene32641.t1 MTR_3g114200 35.484 155 75 5 8 157 18 152 2.71e-12 63.5
MS.gene32641.t1 MTR_3g106960 54.839 62 26 1 198 257 1 62 2.94e-12 65.1
MS.gene32641.t1 MTR_4g056030 31.455 213 117 6 1 203 1 194 4.70e-12 65.9
MS.gene32641.t1 MTR_5g082930 39.796 98 40 2 11 108 17 95 5.09e-12 63.9
MS.gene32641.t1 MTR_2g007550 33.540 161 71 4 9 161 14 146 6.86e-12 65.1
MS.gene32641.t1 MTR_8g062310 31.313 198 110 8 9 202 25 200 1.00e-11 64.7
MS.gene32641.t1 MTR_8g469020 31.193 218 112 9 9 202 7 210 2.53e-11 63.5
MS.gene32641.t1 MTR_7g033940 39.062 128 50 6 11 132 96 201 5.00e-11 61.2
MS.gene32641.t1 MTR_2g082800 34.091 132 65 5 6 133 24 137 7.34e-11 62.0
MS.gene32641.t1 MTR_3g113782 61.702 47 18 0 11 57 19 65 8.50e-11 57.4
MS.gene32641.t1 MTR_8g467790 30.645 248 134 13 9 240 148 373 9.04e-11 62.0
MS.gene32641.t1 MTR_5g021550 31.056 161 96 4 1 155 11 162 9.04e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32641.t1 AT4G14103 36.667 210 114 8 9 213 8 203 1.48e-21 92.8
MS.gene32641.t1 AT4G14103 36.667 210 114 8 9 213 8 203 1.48e-21 92.8
MS.gene32641.t1 AT4G14103 36.667 210 114 8 9 213 8 203 2.32e-21 92.8
MS.gene32641.t1 AT4G14096 32.900 231 136 7 9 234 8 224 2.71e-21 92.8
MS.gene32641.t1 AT4G14096 32.900 231 136 7 9 234 8 224 2.71e-21 92.8
MS.gene32641.t1 AT1G78750 31.373 204 124 5 5 203 14 206 2.27e-18 84.3
MS.gene32641.t1 AT1G78750 31.373 204 124 5 5 203 14 206 2.27e-18 84.3
MS.gene32641.t1 AT1G69630 31.500 200 120 4 9 206 18 202 3.05e-18 84.0
MS.gene32641.t1 AT3G59200 36.139 202 106 9 9 202 7 193 4.40e-17 80.1
MS.gene32641.t1 AT1G16930 32.178 202 116 3 4 202 10 193 4.48e-17 80.5
MS.gene32641.t1 AT1G16930 32.178 202 116 3 4 202 10 193 4.48e-17 80.5
MS.gene32641.t1 AT1G16930 32.178 202 116 3 4 202 10 193 4.48e-17 80.5
MS.gene32641.t1 AT3G59200 36.139 202 106 9 9 202 7 193 6.62e-17 80.1
MS.gene32641.t1 AT4G26340 35.294 204 106 6 9 206 2 185 8.66e-17 79.7
MS.gene32641.t1 AT5G22730 32.500 200 109 6 9 202 28 207 1.48e-16 79.0
MS.gene32641.t1 AT5G22730 32.500 200 109 6 9 202 28 207 1.56e-16 79.0
MS.gene32641.t1 AT5G22730 32.500 200 109 6 9 202 28 207 1.56e-16 79.0
MS.gene32641.t1 AT1G80470 32.663 199 111 6 9 202 15 195 5.58e-16 77.4
MS.gene32641.t1 AT5G56370 36.500 200 96 8 9 200 2 178 8.29e-16 76.6
MS.gene32641.t1 AT5G56370 36.500 200 96 8 9 200 2 178 8.29e-16 76.6
MS.gene32641.t1 AT5G56370 36.500 200 96 8 9 200 2 178 1.09e-15 75.9
MS.gene32641.t1 AT4G13985 28.571 210 129 5 9 210 19 215 1.77e-15 75.9
MS.gene32641.t1 AT1G66310 30.412 194 119 3 9 202 19 196 1.82e-15 75.9
MS.gene32641.t1 AT3G58860 33.981 206 113 6 5 202 3 193 1.86e-15 75.9
MS.gene32641.t1 AT3G60040 35.096 208 126 7 9 209 13 218 1.94e-15 75.9
MS.gene32641.t1 AT3G60040 35.096 208 126 7 9 209 230 435 2.54e-15 75.9
MS.gene32641.t1 AT3G60040 35.096 208 126 7 9 209 233 438 2.55e-15 75.9
MS.gene32641.t1 AT5G53635 32.143 196 113 7 10 202 1 179 2.56e-15 75.5
MS.gene32641.t1 AT3G60040 35.096 208 126 7 9 209 232 437 2.59e-15 75.5
MS.gene32641.t1 AT3G60040 35.096 208 126 7 9 209 232 437 2.80e-15 75.5
MS.gene32641.t1 AT1G78760 28.293 205 123 6 3 202 10 195 3.22e-15 75.1
MS.gene32641.t1 AT3G58900 36.279 215 110 10 9 214 2 198 3.39e-15 74.3
MS.gene32641.t1 AT3G58900 36.279 215 110 10 9 214 2 198 3.80e-15 74.3
MS.gene32641.t1 AT3G58900 36.279 215 110 10 9 214 2 198 3.80e-15 74.3
MS.gene32641.t1 AT3G58900 36.620 213 112 10 9 214 2 198 4.67e-15 74.7
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 5.93e-15 73.6
MS.gene32641.t1 AT3G59190 33.495 206 109 8 9 202 12 201 6.12e-15 73.9
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 8.59e-15 73.6
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 8.59e-15 73.6
MS.gene32641.t1 AT5G22720 31.220 205 106 6 9 202 23 203 9.61e-15 73.9
MS.gene32641.t1 AT3G59190 34.300 207 106 9 9 202 12 201 1.06e-14 73.6
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 17 241 1.16e-14 73.2
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 1.17e-14 73.2
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 1.17e-14 73.2
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 1.17e-14 73.2
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 1.17e-14 73.2
MS.gene32641.t1 AT1G06630 32.422 256 136 10 5 254 8 232 1.50e-14 73.2
MS.gene32641.t1 AT1G66290 28.718 195 114 5 9 200 29 201 1.56e-14 73.2
MS.gene32641.t1 AT5G56380 33.654 208 111 7 9 206 2 192 1.59e-14 73.2
MS.gene32641.t1 AT5G56380 33.654 208 111 7 9 206 2 192 1.59e-14 73.2
MS.gene32641.t1 AT1G55660 34.951 206 113 6 9 208 53 243 1.64e-14 73.2
MS.gene32641.t1 AT1G58310 31.532 222 132 5 6 213 5 220 1.93e-14 72.8
MS.gene32641.t1 AT5G22670 34.010 197 111 5 9 204 11 189 1.93e-14 72.8
MS.gene32641.t1 AT1G55660 34.804 204 112 6 9 206 53 241 1.94e-14 72.4
MS.gene32641.t1 AT1G51370 30.653 199 107 4 9 202 19 191 2.08e-14 72.4
MS.gene32641.t1 AT1G51370 30.653 199 107 4 9 202 19 191 2.34e-14 72.4
MS.gene32641.t1 AT1G51370 30.653 199 107 4 9 202 19 191 2.56e-14 72.4
MS.gene32641.t1 AT3G26922 32.338 201 111 5 7 202 12 192 4.72e-14 70.9
MS.gene32641.t1 AT3G26922 32.338 201 111 5 7 202 12 192 4.72e-14 70.9
MS.gene32641.t1 AT1G78840 34.804 204 104 8 7 205 3 182 5.35e-14 71.6
MS.gene32641.t1 AT1G78840 34.804 204 104 8 7 205 3 182 5.35e-14 71.6
MS.gene32641.t1 AT4G15060 33.333 231 126 10 6 230 169 377 6.49e-14 71.2
MS.gene32641.t1 AT5G25860 29.817 218 134 6 3 208 6 216 6.50e-14 71.2
MS.gene32641.t1 AT3G58930 32.365 241 120 11 9 229 2 219 7.59e-14 71.2
MS.gene32641.t1 AT3G58930 32.365 241 120 11 9 229 2 219 7.59e-14 71.2
MS.gene32641.t1 AT3G58930 32.365 241 120 11 9 229 2 219 7.59e-14 71.2
MS.gene32641.t1 AT5G22610 31.651 218 114 8 9 213 18 213 9.37e-14 70.9
MS.gene32641.t1 AT2G42730 32.692 208 121 8 9 208 5 201 9.61e-14 70.9
MS.gene32641.t1 AT4G00315 32.692 208 111 6 9 206 2 190 9.71e-14 70.9
MS.gene32641.t1 AT5G56440 32.683 205 103 8 9 202 2 182 1.07e-13 70.5
MS.gene32641.t1 AT5G18770 33.168 202 115 6 6 202 21 207 1.13e-13 70.5
MS.gene32641.t1 AT5G18770 33.168 202 115 6 6 202 21 207 1.27e-13 70.1
MS.gene32641.t1 AT2G26860 33.810 210 98 8 9 202 2 186 1.45e-13 70.1
MS.gene32641.t1 AT2G26860 33.810 210 98 8 9 202 2 186 1.45e-13 70.1
MS.gene32641.t1 AT5G22610 32.850 207 104 8 9 202 18 202 2.07e-13 69.7
MS.gene32641.t1 AT5G56690 31.683 202 118 8 11 206 4 191 2.58e-13 69.3
MS.gene32641.t1 AT3G44060 31.841 201 112 6 14 206 4 187 2.63e-13 69.3
MS.gene32641.t1 AT4G15060 33.043 230 126 10 7 230 24 231 2.91e-13 69.3
MS.gene32641.t1 AT4G00160 33.484 221 123 6 9 223 16 218 3.97e-13 68.9
MS.gene32641.t1 AT1G66300 26.020 196 125 4 9 202 29 206 4.59e-13 68.9
MS.gene32641.t1 AT4G10400 34.848 198 108 8 9 202 2 182 5.62e-13 68.6
MS.gene32641.t1 AT4G10400 34.848 198 108 8 9 202 2 182 5.62e-13 68.6
MS.gene32641.t1 AT4G10400 34.848 198 108 8 9 202 2 182 5.62e-13 68.6
MS.gene32641.t1 AT5G41630 32.381 210 110 9 9 202 12 205 7.24e-13 68.2
MS.gene32641.t1 AT3G59240 27.556 225 145 6 9 229 8 218 7.47e-13 68.2
MS.gene32641.t1 AT1G78730 28.230 209 96 6 4 202 17 181 9.55e-13 67.8
MS.gene32641.t1 AT5G60610 31.527 203 109 7 9 205 2 180 1.06e-12 67.4
MS.gene32641.t1 AT5G60610 31.527 203 109 7 9 205 2 180 1.06e-12 67.4
MS.gene32641.t1 AT3G58940 31.120 241 123 10 9 230 2 218 1.28e-12 67.8
MS.gene32641.t1 AT3G58940 31.120 241 123 10 9 230 2 218 1.28e-12 67.8
MS.gene32641.t1 AT1G16940 29.469 207 115 9 7 207 9 190 1.47e-12 67.4
MS.gene32641.t1 AT5G27750 30.542 203 122 6 7 202 3 193 1.95e-12 66.6
MS.gene32641.t1 AT5G27750 30.097 206 119 7 7 202 3 193 2.17e-12 66.6
MS.gene32641.t1 AT1G48400 30.568 229 143 7 4 228 5 221 2.97e-12 66.6
MS.gene32641.t1 AT1G48400 30.568 229 143 7 4 228 5 221 3.09e-12 66.2
MS.gene32641.t1 AT4G09920 34.343 198 109 8 9 202 2 182 3.60e-12 65.5
MS.gene32641.t1 AT4G09920 34.343 198 109 8 9 202 2 182 3.60e-12 65.5
MS.gene32641.t1 AT4G09920 33.824 204 114 8 9 208 2 188 3.70e-12 65.5
MS.gene32641.t1 AT4G09920 33.824 204 114 8 9 208 2 188 3.70e-12 65.5
MS.gene32641.t1 AT4G09920 33.824 204 114 8 9 208 2 188 3.70e-12 65.5
MS.gene32641.t1 AT5G18780 29.858 211 123 7 1 206 1 191 3.83e-12 65.9
MS.gene32641.t1 AT5G18780 29.858 211 123 7 1 206 1 191 3.83e-12 65.9
MS.gene32641.t1 AT5G18780 29.858 211 123 7 1 206 1 191 4.18e-12 65.9
MS.gene32641.t1 AT5G18780 29.858 211 123 7 1 206 1 191 4.18e-12 65.9
MS.gene32641.t1 AT3G59170 31.169 231 130 7 9 216 7 231 4.25e-12 65.9
MS.gene32641.t1 AT5G41830 31.731 208 116 7 9 202 13 208 4.52e-12 65.9
MS.gene32641.t1 AT5G44490 29.703 202 115 5 9 202 17 199 4.70e-12 65.9
MS.gene32641.t1 AT3G44810 31.818 220 137 6 11 225 9 220 4.72e-12 65.9
MS.gene32641.t1 AT4G13965 28.972 214 127 6 7 216 8 200 5.17e-12 65.5
MS.gene32641.t1 AT5G44940 32.500 200 118 6 8 203 4 190 5.62e-12 65.5
MS.gene32641.t1 AT5G44490 29.703 202 115 5 9 202 17 199 5.63e-12 65.5
MS.gene32641.t1 AT2G26030 30.583 206 107 9 7 201 2 182 7.95e-12 65.1
MS.gene32641.t1 AT3G49150 31.466 232 126 11 9 229 16 225 8.80e-12 65.1
MS.gene32641.t1 AT2G26030 30.583 206 107 9 7 201 2 182 8.99e-12 65.1
MS.gene32641.t1 AT2G26030 30.583 206 107 9 7 201 2 182 8.99e-12 65.1
MS.gene32641.t1 AT5G02700 31.156 199 105 7 9 202 27 198 9.00e-12 65.1
MS.gene32641.t1 AT5G56810 29.557 203 122 5 9 207 15 200 1.22e-11 64.3
MS.gene32641.t1 AT5G56810 29.557 203 122 5 9 207 15 200 1.43e-11 63.9
MS.gene32641.t1 AT5G62970 34.286 210 124 8 9 205 2 210 1.53e-11 64.3
MS.gene32641.t1 AT4G00320 32.212 208 115 7 9 202 13 208 2.12e-11 63.9
MS.gene32641.t1 AT5G41840 33.178 214 106 9 9 202 14 210 2.18e-11 63.9
MS.gene32641.t1 AT1G13780 29.245 212 115 7 7 202 8 200 2.62e-11 63.5
MS.gene32641.t1 AT1G13780 29.245 212 115 7 7 202 8 200 3.00e-11 63.2
MS.gene32641.t1 AT5G56420 29.412 204 110 6 9 202 6 185 4.40e-11 62.8
MS.gene32641.t1 AT5G56420 29.412 204 110 6 9 202 6 185 4.40e-11 62.8
MS.gene32641.t1 AT5G56420 29.412 204 110 6 9 202 6 185 4.40e-11 62.8
MS.gene32641.t1 AT3G03030 32.524 206 114 7 9 203 2 193 6.60e-11 62.4
MS.gene32641.t1 AT3G58960 29.832 238 120 9 9 229 2 209 7.25e-11 62.4
MS.gene32641.t1 AT1G66320 25.668 187 119 4 19 203 40 208 7.93e-11 62.0
MS.gene32641.t1 AT3G58880 31.455 213 126 7 9 214 3 202 8.05e-11 62.0
MS.gene32641.t1 AT3G03030 32.524 206 114 7 9 203 2 193 8.21e-11 61.6
MS.gene32641.t1 AT3G28410 30.151 199 107 8 9 202 28 199 8.23e-11 62.0
MS.gene32641.t1 AT3G59230 28.230 209 120 7 9 202 12 205 9.04e-11 62.0

Find 49 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGCAAATCTTCAAGAAT+TGG 0.312602 3.1:+84821543 None:intergenic
TTTCACCTCAAGGTTGGATA+TGG 0.342920 3.1:-84821846 MS.gene32641:CDS
GCTTTCCCAGTGTGGTCAAA+TGG 0.343728 3.1:-84821800 MS.gene32641:CDS
ACTGCACATAGAACTAAATA+AGG 0.351335 3.1:-84821382 None:intergenic
ACATTTAAAGTTCTCGCTTA+AGG 0.364984 3.1:-84821517 MS.gene32641:CDS
TTGGGAGAAAAGAGAGAATA+TGG 0.366719 3.1:+84822072 None:intergenic
CCATTGATGCTTCCATCTCT+TGG 0.395894 3.1:+84822019 None:intergenic
GGATATGGTAGTTCTTCTCT+TGG 0.411373 3.1:-84821831 MS.gene32641:CDS
TCGAGATTTAGTGTTGCTTC+TGG 0.414371 3.1:-84821574 MS.gene32641:CDS
TTAAGCTTTCACCCTCTTGA+TGG 0.416034 3.1:+84821484 None:intergenic
CAAACTCGTTAAAGCTATCA+AGG 0.420450 3.1:+84821907 None:intergenic
GTATTGCGAGGAAATCAAAT+TGG 0.423317 3.1:-84821943 MS.gene32641:CDS
GATTTAGTGTTGCTTCTGGC+TGG 0.435086 3.1:-84821570 MS.gene32641:CDS
GCTAGTGGCAACAACCTGTT+TGG 0.452698 3.1:+84822049 None:intergenic
TTGCAGTTCAAAATGCTAAC+GGG 0.462785 3.1:+84821705 None:intergenic
CTTTCCCAGTGTGGTCAAAT+GGG 0.463970 3.1:-84821799 MS.gene32641:CDS
TGGCAACAACCTGTTTGGTT+GGG 0.476497 3.1:+84822054 None:intergenic
GTACTCTTTGCATATGCTGT+TGG 0.477143 3.1:+84821971 None:intergenic
CCAAGAGATGGAAGCATCAA+TGG 0.487114 3.1:-84822019 MS.gene32641:CDS
GGAAAATGACAATAAGTGTA+AGG 0.492853 3.1:+84821432 None:intergenic
GAGAGAATATGGCTGAGATC+GGG 0.497131 3.1:+84822083 None:intergenic
AGAGAGAATATGGCTGAGAT+CGG 0.498615 3.1:+84822082 None:intergenic
GTGGCAACAACCTGTTTGGT+TGG 0.506826 3.1:+84822053 None:intergenic
TAAGCTTTCACCCTCTTGAT+GGG 0.524668 3.1:+84821485 None:intergenic
GATGCTTCCATCTCTTGGAT+AGG 0.534928 3.1:+84822024 None:intergenic
TTTGCAGTTCAAAATGCTAA+CGG 0.538139 3.1:+84821704 None:intergenic
GAAATCTAGCTCGAGCAGAA+TGG 0.544973 3.1:+84821878 None:intergenic
TTCATATCACTGTAAGTGAA+AGG 0.551600 3.1:+84821732 None:intergenic
TCAACCCATTTGACCACACT+GGG 0.554090 3.1:+84821795 None:intergenic
GTTGAAAGCACTTCATAATG+TGG 0.565738 3.1:-84821409 MS.gene32641:CDS
CTAGCGTCCTATCCAAGAGA+TGG 0.566971 3.1:-84822031 MS.gene32641:CDS
GTCAACCCATTTGACCACAC+TGG 0.581562 3.1:+84821794 None:intergenic
GACCACACTGGGAAAGCCGC+GGG 0.583725 3.1:+84821806 None:intergenic
ATGAACAAAGTTCTAAGCGA+AGG 0.585020 3.1:+84821607 None:intergenic
AACAGCATATGCAAAGAGTA+CGG 0.590431 3.1:-84821969 MS.gene32641:CDS
TAGAAATGTCAGCAAGAACA+AGG 0.594708 3.1:-84822136 None:intergenic
ATCCCGCGGCTTTCCCAGTG+TGG 0.595316 3.1:-84821808 MS.gene32641:CDS
ACATTATGAAGTGCTTTCAA+CGG 0.609482 3.1:+84821411 None:intergenic
CAACACCACATTGTACAACA+TGG 0.623902 3.1:+84821772 None:intergenic
AAAACAAGTCGAGCACAACA+AGG 0.625104 3.1:+84821679 None:intergenic
TGACCACACTGGGAAAGCCG+CGG 0.626237 3.1:+84821805 None:intergenic
AAACTCGTTAAAGCTATCAA+GGG 0.652827 3.1:+84821908 None:intergenic
TCTCTTGGATAGGACGCTAG+TGG 0.659918 3.1:+84822034 None:intergenic
AGTTCTTCTCTTGGATCCCG+CGG 0.673679 3.1:-84821822 MS.gene32641:CDS
AACTACCATATCCAACCTTG+AGG 0.674203 3.1:+84821841 None:intergenic
AAACAAGTCGAGCACAACAA+GGG 0.676477 3.1:+84821680 None:intergenic
AAGTGAAAGGAAAGAGACGA+AGG 0.699358 3.1:+84821745 None:intergenic
AGAGTACGGAGAGTATTGCG+AGG 0.739836 3.1:-84821955 MS.gene32641:CDS
GTTGACCATGTTGTACAATG+TGG 0.757470 3.1:-84821777 MS.gene32641:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAACTCGTTAAAGCTATCAA+GGG + chr3.1:84821609-84821628 None:intergenic 30.0%
GGAAAATGACAATAAGTGTA+AGG + chr3.1:84822085-84822104 None:intergenic 30.0%
GTATGCAAATCTTCAAGAAT+TGG + chr3.1:84821974-84821993 None:intergenic 30.0%
TTCATATCACTGTAAGTGAA+AGG + chr3.1:84821785-84821804 None:intergenic 30.0%
TTTGCAGTTCAAAATGCTAA+CGG + chr3.1:84821813-84821832 None:intergenic 30.0%
! ACATTATGAAGTGCTTTCAA+CGG + chr3.1:84822106-84822125 None:intergenic 30.0%
! ACATTTAAAGTTCTCGCTTA+AGG - chr3.1:84821997-84822016 MS.gene32641:CDS 30.0%
!! CTTGTTTTCATTTAATGCGA+AGG - chr3.1:84821850-84821869 MS.gene32641:CDS 30.0%
AACAGCATATGCAAAGAGTA+CGG - chr3.1:84821545-84821564 MS.gene32641:CDS 35.0%
CAAACTCGTTAAAGCTATCA+AGG + chr3.1:84821610-84821629 None:intergenic 35.0%
GTATTGCGAGGAAATCAAAT+TGG - chr3.1:84821571-84821590 MS.gene32641:CDS 35.0%
TTGCAGTTCAAAATGCTAAC+GGG + chr3.1:84821812-84821831 None:intergenic 35.0%
TTGGGAGAAAAGAGAGAATA+TGG + chr3.1:84821445-84821464 None:intergenic 35.0%
!! ATGAACAAAGTTCTAAGCGA+AGG + chr3.1:84821910-84821929 None:intergenic 35.0%
!! GTTGAAAGCACTTCATAATG+TGG - chr3.1:84822105-84822124 MS.gene32641:CDS 35.0%
AAAACAAGTCGAGCACAACA+AGG + chr3.1:84821838-84821857 None:intergenic 40.0%
AAACAAGTCGAGCACAACAA+GGG + chr3.1:84821837-84821856 None:intergenic 40.0%
AACTACCATATCCAACCTTG+AGG + chr3.1:84821676-84821695 None:intergenic 40.0%
AAGTGAAAGGAAAGAGACGA+AGG + chr3.1:84821772-84821791 None:intergenic 40.0%
AGAGAGAATATGGCTGAGAT+CGG + chr3.1:84821435-84821454 None:intergenic 40.0%
CAACACCACATTGTACAACA+TGG + chr3.1:84821745-84821764 None:intergenic 40.0%
GGATATGGTAGTTCTTCTCT+TGG - chr3.1:84821683-84821702 MS.gene32641:CDS 40.0%
GTACTCTTTGCATATGCTGT+TGG + chr3.1:84821546-84821565 None:intergenic 40.0%
GTTGACCATGTTGTACAATG+TGG - chr3.1:84821737-84821756 MS.gene32641:CDS 40.0%
TAAGCTTTCACCCTCTTGAT+GGG + chr3.1:84822032-84822051 None:intergenic 40.0%
TTAAGCTTTCACCCTCTTGA+TGG + chr3.1:84822033-84822052 None:intergenic 40.0%
TTTCACCTCAAGGTTGGATA+TGG - chr3.1:84821668-84821687 MS.gene32641:CDS 40.0%
! AAGAGTTTTCACCTCAAGGT+TGG - chr3.1:84821662-84821681 MS.gene32641:CDS 40.0%
! CATCAAGAGTTTTCACCTCA+AGG - chr3.1:84821658-84821677 MS.gene32641:CDS 40.0%
! GACTCTTTTACCCATCAAGA+GGG - chr3.1:84822019-84822038 MS.gene32641:CDS 40.0%
!! AAGCGAAGGATTTTGAGGAA+GGG + chr3.1:84821896-84821915 None:intergenic 40.0%
!! GTTCTAAGCGAAGGATTTTG+AGG + chr3.1:84821901-84821920 None:intergenic 40.0%
!! TAAGCGAAGGATTTTGAGGA+AGG + chr3.1:84821897-84821916 None:intergenic 40.0%
!! TCGAGATTTAGTGTTGCTTC+TGG - chr3.1:84821940-84821959 MS.gene32641:CDS 40.0%
CCATTGATGCTTCCATCTCT+TGG + chr3.1:84821498-84821517 None:intergenic 45.0%
CTTTCCCAGTGTGGTCAAAT+GGG - chr3.1:84821715-84821734 MS.gene32641:CDS 45.0%
GAGAGAATATGGCTGAGATC+GGG + chr3.1:84821434-84821453 None:intergenic 45.0%
GATGCTTCCATCTCTTGGAT+AGG + chr3.1:84821493-84821512 None:intergenic 45.0%
TCAACCCATTTGACCACACT+GGG + chr3.1:84821722-84821741 None:intergenic 45.0%
TGGCAACAACCTGTTTGGTT+GGG + chr3.1:84821463-84821482 None:intergenic 45.0%
! CTCTTTTCTCCCAACCAAAC+AGG - chr3.1:84821451-84821470 MS.gene32641:CDS 45.0%
! GAAATCTAGCTCGAGCAGAA+TGG + chr3.1:84821639-84821658 None:intergenic 45.0%
! GGACTCTTTTACCCATCAAG+AGG - chr3.1:84822018-84822037 MS.gene32641:CDS 45.0%
!! AGCGAAGGATTTTGAGGAAG+GGG + chr3.1:84821895-84821914 None:intergenic 45.0%
!! CCAAGAGATGGAAGCATCAA+TGG - chr3.1:84821495-84821514 MS.gene32641:CDS 45.0%
!! GATTTAGTGTTGCTTCTGGC+TGG - chr3.1:84821944-84821963 MS.gene32641:CDS 45.0%
AGTTCTTCTCTTGGATCCCG+CGG - chr3.1:84821692-84821711 MS.gene32641:CDS 50.0%
CTAGCGTCCTATCCAAGAGA+TGG - chr3.1:84821483-84821502 MS.gene32641:CDS 50.0%
GCTAGTGGCAACAACCTGTT+TGG + chr3.1:84821468-84821487 None:intergenic 50.0%
GCTTTCCCAGTGTGGTCAAA+TGG - chr3.1:84821714-84821733 MS.gene32641:CDS 50.0%
GTCAACCCATTTGACCACAC+TGG + chr3.1:84821723-84821742 None:intergenic 50.0%
GTGGCAACAACCTGTTTGGT+TGG + chr3.1:84821464-84821483 None:intergenic 50.0%
TCTCTTGGATAGGACGCTAG+TGG + chr3.1:84821483-84821502 None:intergenic 50.0%
!! AGAGTACGGAGAGTATTGCG+AGG - chr3.1:84821559-84821578 MS.gene32641:CDS 50.0%
TGACCACACTGGGAAAGCCG+CGG + chr3.1:84821712-84821731 None:intergenic 60.0%
ATCCCGCGGCTTTCCCAGTG+TGG - chr3.1:84821706-84821725 MS.gene32641:CDS 65.0%
GACCACACTGGGAAAGCCGC+GGG + chr3.1:84821711-84821730 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 84821383 84822153 84821383 ID=MS.gene32641
chr3.1 mRNA 84821383 84822153 84821383 ID=MS.gene32641.t1;Parent=MS.gene32641
chr3.1 exon 84821383 84822153 84821383 ID=MS.gene32641.t1.exon1;Parent=MS.gene32641.t1
chr3.1 CDS 84821383 84822153 84821383 ID=cds.MS.gene32641.t1;Parent=MS.gene32641.t1
Gene Sequence

>MS.gene32641

ATGTCAGCAAGAACAAGGAATTATGATGTCATCAGCAGTTTATCAGATCCCGATCTCAGCCATATTCTCTCTTTTCTCCCAACCAAACAGGTTGTTGCCACTAGCGTCCTATCCAAGAGATGGAAGCATCAATGGCGCTCAGTTATCGATATCAACTTAACCAACAGCATATGCAAAGAGTACGGAGAGTATTGCGAGGAAATCAAATTGGATAATCAATATGCCCTTGATAGCTTTAACGAGTTTGTGAACTCCATTCTGCTCGAGCTAGATTTCATCAAGAGTTTTCACCTCAAGGTTGGATATGGTAGTTCTTCTCTTGGATCCCGCGGCTTTCCCAGTGTGGTCAAATGGGTTGACCATGTTGTACAATGTGGTGTTGAGAGCCTTCGTCTCTTTCCTTTCACTTACAGTGATATGAAATTGCCCGTTAGCATTTTGAACTGCAAAACCCTTGTTGTGCTCGACTTGTTTTCATTTAATGCGAAGGATTTTTCTTCTGTTAGACTCCCCTTCCTCAAAATCCTTCGCTTAGAACTTTGTTCATTTCTAAATGATCGAGATTTAGTGTTGCTTCTGGCTGGATGTCCAATTCTTGAAGATTTGCATACAGAACATTTAAAGTTCTCGCTTAAGGACTCTTTTACCCATCAAGAGGGTGAAAGCTTAAGCTTAAGCAAGTTGACTAAAGCAGAAATGCCTTACACTTATTGTCATTTTCCGTTGAAAGCACTTCATAATGTGGAGAAACTGCACATAGAACTAAATAAG

Protein sequence

>MS.gene32641.t1

MSARTRNYDVISSLSDPDLSHILSFLPTKQVVATSVLSKRWKHQWRSVIDINLTNSICKEYGEYCEEIKLDNQYALDSFNEFVNSILLELDFIKSFHLKVGYGSSSLGSRGFPSVVKWVDHVVQCGVESLRLFPFTYSDMKLPVSILNCKTLVVLDLFSFNAKDFSSVRLPFLKILRLELCSFLNDRDLVLLLAGCPILEDLHTEHLKFSLKDSFTHQEGESLSLSKLTKAEMPYTYCHFPLKALHNVEKLHIELNK