AlfalfaGEDB | MS.gene72957

M. sativa cultivar XinJiangDaYe / MS.gene72957

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72957.t1	XP_013445781.1	80.7	467	85	3	1	466	1	463	3.90E-206	727.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72957.t1	Q9ZV93	27.9	463	279	17	29	463	20	455	7.4e-28	126.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72957.t1	A0A072TQY2	80.7	467	85	3	1	466	1	463	2.8e-206	727.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002108	MS.gene72957	PPI
MS.gene005794	MS.gene72957	PPI
MS.gene006692	MS.gene72957	PPI
MS.gene006725	MS.gene72957	PPI
MS.gene006727	MS.gene72957	PPI
MS.gene006730	MS.gene72957	PPI
MS.gene007794	MS.gene72957	PPI
MS.gene008827	MS.gene72957	PPI
MS.gene011054	MS.gene72957	PPI
MS.gene011055	MS.gene72957	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72957.t1	MTR_8g468810	82.869	467	75	3	1	466	1	463	0.0	775
MS.gene72957.t1	MTR_8g468810	82.400	375	61	3	1	374	1	371	0.0	613
MS.gene72957.t1	MTR_8g058970	62.680	485	154	4	1	466	1	477	0.0	566
MS.gene72957.t1	MTR_8g468810	82.075	318	53	2	1	318	1	314	0.0	519
MS.gene72957.t1	MTR_8g468810	82.075	318	53	2	1	318	1	314	0.0	519
MS.gene72957.t1	MTR_8g468810	82.075	318	53	2	1	318	1	314	0.0	518
MS.gene72957.t1	MTR_2g083840	55.485	474	186	9	1	466	1	457	1.24e-161	466
MS.gene72957.t1	MTR_4g032730	48.866	485	198	12	11	465	2	466	3.17e-135	400
MS.gene72957.t1	MTR_8g062270	50.330	455	193	12	27	465	16	453	5.26e-134	396
MS.gene72957.t1	MTR_8g468760	50.855	468	165	14	12	465	2	418	6.08e-128	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72957.t1	AT4G26340	29.759	457	265	17	27	466	2	419	3.49e-35	136
MS.gene72957.t1	AT1G16930	28.189	486	256	22	25	466	13	449	4.00e-32	128
MS.gene72957.t1	AT1G16930	28.189	486	256	22	25	466	13	449	4.00e-32	128
MS.gene72957.t1	AT1G16930	28.189	486	256	22	25	466	13	449	4.00e-32	128
MS.gene72957.t1	AT5G56420	27.371	464	272	18	24	466	3	422	1.78e-30	123
MS.gene72957.t1	AT5G56420	27.371	464	272	18	24	466	3	422	1.78e-30	123
MS.gene72957.t1	AT5G56420	27.371	464	272	18	24	466	3	422	1.78e-30	123
MS.gene72957.t1	AT1G78750	27.651	481	290	18	11	463	5	455	4.01e-30	123
MS.gene72957.t1	AT1G78750	27.651	481	290	18	11	463	5	455	4.01e-30	123
MS.gene72957.t1	AT5G56370	27.527	465	265	20	27	465	2	420	1.95e-28	117

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Find 109 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTACCTCATGGAG+AGG	0.640625	8.3:-41869359	None:intergenic
AAAGTGAATATAGGTCAAGT+GGG	0.636598	8.3:-41870968	None:intergenic
AAATTGTATCAGTCTGGTGA+AGG	0.607936	8.3:-41871675	None:intergenic
AAGAGATTACAACTAGACAT+TGG	0.609472	8.3:+41870153	MS.gene72957:CDS
AAGAGATTTAAATTTACTGT+AGG	0.482663	8.3:+41870291	MS.gene72957:CDS
AAGTGGGATACAAGACAATT+AGG	0.370823	8.3:-41870952	None:intergenic
ACAACTAGACATTGGTAATG+TGG	0.620834	8.3:+41870161	MS.gene72957:CDS
ACAGTTACCTCATGGAGAGG+AGG	0.634577	8.3:-41869356	None:intergenic
ACCACATCAATATGGTCTCA+CGG	0.613811	8.3:+41870912	MS.gene72957:CDS
ACGCATCTTCCGAATGTCGC+GGG	0.555891	8.3:-41869172	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAACTCGAGGAAAACT+AGG	+	chr8.3:41869730-41869749	MS.gene72957:intron	30.0%
AAAGTGAATATAGGTCAAGT+GGG	-	chr8.3:41870971-41870990	None:intergenic	30.0%
AAGAGATTACAACTAGACAT+TGG	+	chr8.3:41870153-41870172	MS.gene72957:CDS	30.0%
ACGTACCAAAAGAGATTATT+AGG	+	chr8.3:41870640-41870659	MS.gene72957:intron	30.0%
ACTTAGAAATTGTATCAGTC+TGG	-	chr8.3:41871684-41871703	None:intergenic	30.0%
AGTTGTAATCTCTTCAATGA+TGG	-	chr8.3:41870147-41870166	None:intergenic	30.0%
ATACTAGTTGTTTATCGTAG+AGG	+	chr8.3:41871648-41871667	MS.gene72957:intron	30.0%
ATGAAAAAACAGTTACCTCA+TGG	-	chr8.3:41869367-41869386	None:intergenic	30.0%
ATGGTAGTATTACCATCTTA+TGG	+	chr8.3:41871411-41871430	MS.gene72957:intron	30.0%
CAAGTTAATTACCTAGAACT+TGG	-	chr8.3:41871182-41871201	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	41868865	41871798	41868865	ID=MS.gene72957
chr8.3	mRNA	41868865	41871798	41868865	ID=MS.gene72957.t1;Parent=MS.gene72957
chr8.3	exon	41868865	41869370	41868865	ID=MS.gene72957.t1.exon1;Parent=MS.gene72957.t1
chr8.3	CDS	41868865	41869370	41868865	ID=cds.MS.gene72957.t1;Parent=MS.gene72957.t1
chr8.3	exon	41870092	41870542	41870092	ID=MS.gene72957.t1.exon2;Parent=MS.gene72957.t1
chr8.3	CDS	41870092	41870542	41870092	ID=cds.MS.gene72957.t1;Parent=MS.gene72957.t1
chr8.3	exon	41870652	41870816	41870652	ID=MS.gene72957.t1.exon3;Parent=MS.gene72957.t1
chr8.3	CDS	41870652	41870816	41870652	ID=cds.MS.gene72957.t1;Parent=MS.gene72957.t1
chr8.3	exon	41870904	41871189	41870904	ID=MS.gene72957.t1.exon4;Parent=MS.gene72957.t1
chr8.3	CDS	41870904	41871189	41870904	ID=cds.MS.gene72957.t1;Parent=MS.gene72957.t1
chr8.3	exon	41871668	41871798	41871668	ID=MS.gene72957.t1.exon5;Parent=MS.gene72957.t1
chr8.3	CDS	41871668	41871798	41871668	ID=cds.MS.gene72957.t1;Parent=MS.gene72957.t1

Gene Sequence

>MS.gene72957

ATGGAGGAAAGTTCAAAACGAAGAAAACCAGGAGAAGAAGAAAATGATGGGCAAGGCAGTAACAGTAACAGTAACAAAGACAGATTAAGCAGTCTGTCAGACTCTCTCTTGTGCCATATACTTTCCTTCCTTCCCACAAAAACAACTGTGTGTACAATGAGCCTTGTTTCTCATAGGTATCTTCATCTCTGGAAATATCTCCAAGCTTTTGATTTCTACGATGAGTACTCTCCCGGCGTCGATGGCGAGGCCGAACATTTCAAAGACTTTGCTATTTTCGTCAACGGCTTTCTCTCTTTACGAAGGACCCGCGACATTCGGAAGATGCGTCTCTCTTGCGGCCAATCTCAACTTGATAACTTCGCTGAACGCTCTGTTGACACGTGGATCCGCACTGCCGTTGGGCCCCACCTTGAGGATCTTCATCTCGCTCTCTTCTCGTCTGAGGATCAAGGCTTCAAACTCCCTCTCGCCATCCTATCATGCACTAACCTCCTCTCCATGAGGTAACTGTTTTTTCATATTTGAGTCATAACAGGATTTTAGTCTCATTTCCATTTTCAATGTTTATTTGTTACAGAGAAATAGGTACAATGGGATAACAGATGATTAAAATTATTTTATGAAAAAAGTAACAAGATTTATTGATTTTAACAATGAAAGTTGACTCAGTTGGTAAGTAGTTGACTCACCCGCAAGGTCATGAGATCAACTTCCACTATTGATGTGGGAATCTCTTTGTTGGTTGATCTGTATGTACATTAGTTGGCACTCACAGAGGGACATGCCTTGTCGCGCGGTAGCTCCTGGAGCCCAACTCACCTAAACTTTCTAAAAAAACATTTATTGATTGTTTTGTTATCTGAAAATAACTCGAGGAAAACTAGGATCCGATGGAGTAGTAATTGGTGATTTTATGATTATTATGCTAATTAAGCAAAGACATTTTCAATTAACATACCAATTAATGAAAGATATGACAAAACTCGCTAAGGAAAAGACGCTATGTCATGTTTTGTTACATTGTTACATACATTTAACATTATTAGACATTCACTTGCAAAATGGCTTTTTATTCTAAAATTGTACTGGTATTTACAAAAAATTAGTCTTTTTTAGAGCTACAAAGATATTTCAGTCATTTTTTTATTTATTATTTGCACACTTCTTCTTGTTAAATGTGACATGATAAATGATGATAACATAAGATTTGTGTAATGTACACAGTCTCTACGGTGAGATCTTTGTGGAATTGGAACAATCGTCGGCTGTTTGTTTACCATCATTGAAGAGATTACAACTAGACATTGGTAATGTGGATGTGAATGCCATTAATATCCTTCTCTCTGCCTGTCCAATCTTAGAAATTTTGGAACTTTCCTTTTCAACCGAATCTTTGGCCAAGCTTAGGGTTCCATCTTCCTTGAAGAGATTTAAATTTACTGTAGGGAATGACATTGAAGTTTGTCTTGAGATAGACACACCTGGTCTTAAGTACCTTAGCCTCGCCGATATCACACTTGGCGATGCCACTTTTGTTGGGGACTTGCACAGCGTGGAGGAAGCATATCTTGATTTAGAGTGCTCTTCTGAAAGTGATTCTGTTGACCTTTTACCCACTCTCCTGCAAGCTCTCTCTGGACTTAAACGTCTAGTGTTTAGTTGTAATTCAGCAATGGTGAGTGCAATTTTCATTATCCATGTGTATTATATATTCCATTATATATTTAGTAGTTTTGTGCTAATCCTTGTATCTCCACTTGTTGTTGTTGTGTACGTACCAAAAGAGATTATTAGGTAGTCAACCTATTATAGATTTTTCGAAAATGTACTTTTCGGAATTTCGGTGTTTACTACATCTAGAGCTCATTCTTCCTACTTTCGACCCTTTTCTGTACGACGTGCTTCAGAAATGTCCTATGCTTCAAGCTCTCATAATTCAGAATGCGAAGGTTCGTAAATAGAGTTTAACTTAAGTTTTATTGTGGGTGTGTGGTGTTTGTTTGATTATTTGGTGAGTTGTACCTTGTTTTCTGCAGGATACATCACCACATCAATATGGTCTCACGGCAAAGCCGAAAAGTGTTCCTAATTGTCTTGTATCCCACTTGACCTATATTCACTTTAAAGGATATACAGGATGTTCGCGTGAGATGGAATTTGCTAGTTATGTTTTGCATTATGGACTTGTTTTGAAGACAATGCTTATTTCTGGTTTTTTGTCGGATGAAAGCAAGAAGTCGACAAAGTACCATTTTCTCAGACAATTTTCGAATATGCCAAGGGGATCTACTGTCTGCCAAGTTAAATTTGACCAAGTTCTAGGTAATTAACTTGGTACGAAGTACCATTTTCATGCCATTTATTGTGAATTAACTTAGTAATTTTGCATTGTGAGCTTCTTTTTTTAATTAGTAATAATAGTAGTAAATCTGTGTTTGGGGGCCAGTTTTTTGCATTGTGAGCTCACTTTTAAGGTTATTGAAAAACTCTAAAAATAGGCCAGTTTTTTTTTTTTTTTTGGTTGCGTTTAACTCAATTTAACTATGGTAGTATTACCATCTTATGGGAAAGGAATAAATTTCTTATGTTCATGTATCAGTTAAGAATTTTTTAACTTCTGTTTCAATCATATTTTATATTTTCTACTTTCTACAAATGTATTTTATTTAGAAGTTATATTATGATGTGGTTGCCATTGACCAAATCTTACTGATAGAGGGTTCAAATGATAGAAATGAATGAAAATATAGGCTGGTCTTTACTGATGATCTAAAAGAATTATACTAGTTGTTTATCGTAGAGGACCTCCTTCACCAGACTGATACAATTTCTAAGTTATTCCTTACTCTGCCCCTCACCATCCTTATAACATCACTAACACAAGTCAGGACGAGTTTCATCATCTATGGCTCTCTTATTTCTGCTAACTAA

Protein sequence

>MS.gene72957.t1

MEESSKRRKPGEEENDGQGSNSNSNKDRLSSLSDSLLCHILSFLPTKTTVCTMSLVSHRYLHLWKYLQAFDFYDEYSPGVDGEAEHFKDFAIFVNGFLSLRRTRDIRKMRLSCGQSQLDNFAERSVDTWIRTAVGPHLEDLHLALFSSEDQGFKLPLAILSCTNLLSMSLYGEIFVELEQSSAVCLPSLKRLQLDIGNVDVNAINILLSACPILEILELSFSTESLAKLRVPSSLKRFKFTVGNDIEVCLEIDTPGLKYLSLADITLGDATFVGDLHSVEEAYLDLECSSESDSVDLLPTLLQALSGLKRLVFSCNSAMRLLGSQPIIDFSKMYFSEFRCLLHLELILPTFDPFLYDVLQKCPMLQALIIQNAKDTSPHQYGLTAKPKSVPNCLVSHLTYIHFKGYTGCSREMEFASYVLHYGLVLKTMLISGFLSDESKKSTKYHFLRQFSNMPRGSTVCQVKFDQVLEDLLHQTDTISKLFLTLPLTILITSLTQVRTSFIIYGSLISAN