AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47772

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47772.t1 MTR_7g056433 56.303 238 96 3 32 263 153 388 6.00e-78 241
MS.gene47772.t1 MTR_7g115270 52.790 233 102 1 37 261 167 399 3.37e-74 231
MS.gene47772.t1 MTR_5g013500 49.793 241 106 5 37 263 125 364 3.95e-67 213
MS.gene47772.t1 MTR_7g098510 42.324 241 123 5 32 263 157 390 1.25e-52 176
MS.gene47772.t1 MTR_1g041245 45.570 237 112 8 37 263 156 385 8.77e-49 166
MS.gene47772.t1 MTR_7g098570 43.348 233 124 4 32 259 159 388 2.35e-48 167
MS.gene47772.t1 MTR_7g033915 42.667 225 117 5 41 263 150 364 5.07e-46 158
MS.gene47772.t1 MTR_3g036250 43.348 233 101 6 37 261 154 363 5.93e-46 157
MS.gene47772.t1 MTR_7g056420 48.035 229 103 8 41 257 134 358 2.54e-45 163
MS.gene47772.t1 MTR_7g056430 48.035 229 103 8 41 257 134 358 3.00e-45 162
MS.gene47772.t1 MTR_7g032370 40.948 232 117 7 37 263 135 351 1.80e-44 153
MS.gene47772.t1 MTR_7g098480 41.739 230 122 5 39 263 166 388 1.82e-44 156
MS.gene47772.t1 MTR_7g034120 39.095 243 118 8 33 264 85 308 1.01e-43 150
MS.gene47772.t1 MTR_7g033990 41.558 231 116 7 32 256 158 375 2.36e-43 152
MS.gene47772.t1 MTR_3g108560 40.741 243 115 6 37 263 159 388 4.26e-43 150
MS.gene47772.t1 MTR_7g032380 41.202 233 97 8 37 263 157 355 5.74e-43 149
MS.gene47772.t1 MTR_7g034115 43.119 218 112 7 37 248 156 367 5.02e-41 145
MS.gene47772.t1 MTR_0543s0010 38.095 231 129 4 39 263 227 449 4.30e-40 144
MS.gene47772.t1 MTR_7g088260 39.914 233 130 6 37 264 235 462 9.59e-39 140
MS.gene47772.t1 MTR_3g023630 38.819 237 127 6 31 262 149 372 5.60e-38 137
MS.gene47772.t1 MTR_3g087260 39.662 237 124 7 37 263 229 456 6.20e-38 138
MS.gene47772.t1 MTR_0492s0020 37.963 216 120 4 39 248 227 434 1.67e-37 137
MS.gene47772.t1 MTR_3g109982 37.387 222 126 5 37 251 247 462 1.89e-35 134
MS.gene47772.t1 MTR_3g040700 37.788 217 104 5 37 246 192 384 1.16e-34 129
MS.gene47772.t1 MTR_5g008920 35.193 233 139 6 37 264 156 381 1.11e-33 125
MS.gene47772.t1 MTR_3g082890 34.138 290 151 9 5 264 205 484 1.27e-33 127
MS.gene47772.t1 MTR_5g008950 34.615 234 138 6 37 264 141 365 7.70e-33 123
MS.gene47772.t1 MTR_3g108150 39.149 235 128 8 39 263 157 386 8.63e-33 123
MS.gene47772.t1 MTR_2g020180 36.652 221 115 6 51 264 13 215 1.27e-32 119
MS.gene47772.t1 MTR_4g080610 36.402 239 133 5 37 263 125 356 3.97e-32 121
MS.gene47772.t1 MTR_7g056277 35.808 229 138 4 37 264 408 628 7.86e-32 123
MS.gene47772.t1 MTR_3g467400 36.975 238 117 6 30 263 158 366 8.17e-32 120
MS.gene47772.t1 MTR_7g056020 36.245 229 130 3 37 257 147 367 4.59e-31 121
MS.gene47772.t1 MTR_7g081290 48.252 143 60 6 129 264 121 256 2.19e-30 114
MS.gene47772.t1 MTR_3g115430 50.000 114 51 3 151 263 16 124 3.50e-30 110
MS.gene47772.t1 MTR_5g012840 33.761 234 103 6 35 263 131 317 4.39e-30 115
MS.gene47772.t1 MTR_7g056287 34.498 229 141 4 37 264 152 372 7.12e-30 115
MS.gene47772.t1 MTR_6g045333 33.190 232 148 5 39 263 214 445 8.33e-30 116
MS.gene47772.t1 MTR_7g026500 32.636 239 135 9 37 263 170 394 1.45e-29 115
MS.gene47772.t1 MTR_7g083740 32.283 254 139 9 29 263 127 366 4.46e-29 113
MS.gene47772.t1 MTR_5g045170 33.188 229 147 3 37 261 162 388 7.39e-29 113
MS.gene47772.t1 MTR_3g082890 31.206 282 129 6 41 264 167 441 8.63e-29 113
MS.gene47772.t1 MTR_3g107100 33.058 242 136 8 39 261 161 395 2.38e-28 112
MS.gene47772.t1 MTR_5g054920 35.000 180 109 3 56 231 2 177 2.13e-27 104
MS.gene47772.t1 MTR_5g007410 33.659 205 127 5 39 235 176 379 4.73e-27 108
MS.gene47772.t1 MTR_3g105060 34.468 235 136 6 31 263 154 372 7.13e-27 107
MS.gene47772.t1 MTR_7g114710 33.878 245 119 9 29 263 152 363 1.13e-26 106
MS.gene47772.t1 MTR_8g085430 40.462 173 87 5 89 248 143 312 1.31e-26 105
MS.gene47772.t1 MTR_3g071850 33.333 207 129 6 38 236 176 381 1.45e-26 108
MS.gene47772.t1 MTR_2g007450 32.110 218 121 6 37 233 183 394 1.67e-26 107
MS.gene47772.t1 MTR_4g039440 30.612 245 144 7 37 264 177 412 5.40e-26 105
MS.gene47772.t1 MTR_1g066830 31.780 236 148 6 37 263 155 386 5.48e-26 105
MS.gene47772.t1 MTR_7g007080 31.933 238 132 8 37 261 156 376 1.06e-25 104
MS.gene47772.t1 MTR_3g099830 32.218 239 129 8 39 261 150 371 1.15e-25 104
MS.gene47772.t1 MTR_1g085120 29.167 240 150 4 37 264 240 471 1.64e-25 104
MS.gene47772.t1 MTR_5g063950 31.760 233 151 3 37 264 133 362 2.40e-25 103
MS.gene47772.t1 MTR_1g085120 29.167 240 150 4 37 264 315 546 2.83e-25 104
MS.gene47772.t1 MTR_5g073420 30.472 233 143 6 37 264 162 380 3.04e-25 103
MS.gene47772.t1 MTR_5g058000 32.328 232 141 6 37 263 154 374 4.59e-25 102
MS.gene47772.t1 MTR_2g008310 33.810 210 114 8 35 231 146 343 4.93e-25 102
MS.gene47772.t1 MTR_1g053025 27.869 244 140 8 39 262 160 387 6.91e-25 102
MS.gene47772.t1 MTR_2g008320 32.701 211 117 7 35 231 200 399 9.54e-25 102
MS.gene47772.t1 MTR_6g040270 29.536 237 148 6 37 264 155 381 9.74e-25 101
MS.gene47772.t1 MTR_6g022500 30.769 221 132 6 37 250 249 455 1.01e-24 102
MS.gene47772.t1 MTR_1089s0010 30.380 237 144 7 37 264 155 379 1.75e-24 101
MS.gene47772.t1 MTR_1g108800 32.489 237 134 7 37 261 117 339 2.45e-24 100
MS.gene47772.t1 MTR_1g043170 56.790 81 32 1 183 263 10 87 2.76e-23 90.9
MS.gene47772.t1 MTR_3g026920 29.461 241 135 9 41 262 179 403 3.25e-23 97.8
MS.gene47772.t1 MTR_1g107385 31.429 245 131 8 35 261 195 420 4.79e-23 97.4
MS.gene47772.t1 MTR_2g005990 32.917 240 130 9 38 261 168 392 1.21e-22 96.3
MS.gene47772.t1 MTR_2g007400 28.395 243 142 7 39 261 176 406 2.43e-22 95.5
MS.gene47772.t1 MTR_5g058100 30.172 232 153 5 37 263 156 383 3.94e-22 94.7
MS.gene47772.t1 MTR_7g075820 30.303 231 139 7 38 261 176 391 4.02e-22 94.7
MS.gene47772.t1 MTR_7g055943 30.962 239 145 7 39 264 190 421 6.07e-22 94.4
MS.gene47772.t1 MTR_2g007360 27.668 253 140 8 37 261 134 371 6.77e-22 94.0
MS.gene47772.t1 MTR_1g108820 30.417 240 145 8 37 261 151 383 1.03e-21 93.6
MS.gene47772.t1 MTR_5g073370 31.707 205 118 7 37 231 155 347 1.44e-21 93.2
MS.gene47772.t1 MTR_5g083890 33.178 214 114 9 38 233 174 376 7.09e-21 92.0
MS.gene47772.t1 MTR_7g060470 32.444 225 118 11 37 238 153 366 7.35e-21 91.3
MS.gene47772.t1 MTR_5g031970 30.667 225 134 4 37 261 151 353 8.17e-21 90.5
MS.gene47772.t1 MTR_7g007340 34.146 205 108 7 39 231 140 329 2.83e-20 89.4
MS.gene47772.t1 MTR_3g107160 33.168 202 120 6 39 232 163 357 3.00e-20 89.4
MS.gene47772.t1 MTR_0009s0080 30.093 216 131 4 37 239 167 375 9.62e-20 88.2
MS.gene47772.t1 MTR_7g034110 31.000 200 92 5 35 232 156 311 1.86e-19 86.7
MS.gene47772.t1 MTR_6g011460 30.672 238 145 6 37 264 194 421 1.88e-19 87.4
MS.gene47772.t1 MTR_3g107120 32.338 201 121 5 39 231 171 364 2.19e-19 87.0
MS.gene47772.t1 MTR_3g107940 40.336 119 59 2 133 248 88 197 2.91e-19 86.3
MS.gene47772.t1 MTR_5g039470 28.095 210 122 6 37 228 130 328 3.02e-19 85.9
MS.gene47772.t1 MTR_2g036470 29.741 232 150 6 39 261 166 393 3.36e-19 86.7
MS.gene47772.t1 MTR_5g045510 26.201 229 148 2 37 261 158 369 4.59e-19 85.9
MS.gene47772.t1 MTR_6g022520 29.358 218 143 3 55 264 99 313 7.16e-19 84.7
MS.gene47772.t1 MTR_6g022360 27.004 237 152 6 39 263 180 407 1.22e-18 85.1
MS.gene47772.t1 MTR_7g022060 45.745 94 48 2 172 263 236 328 2.18e-18 83.6
MS.gene47772.t1 MTR_3g071790 30.811 185 119 6 49 225 19 202 2.72e-18 80.9
MS.gene47772.t1 MTR_5g039450 26.556 241 145 7 37 262 133 356 2.83e-18 83.6
MS.gene47772.t1 MTR_6g029350 30.556 216 120 10 60 264 2 198 4.76e-18 81.3
MS.gene47772.t1 MTR_2g007090 29.508 244 132 8 30 263 80 293 7.01e-18 81.6
MS.gene47772.t1 MTR_3g108140 45.679 81 44 0 183 263 67 147 1.50e-17 78.6
MS.gene47772.t1 MTR_7g021930 45.263 95 49 2 172 264 236 329 1.76e-17 80.9
MS.gene47772.t1 MTR_7g021970 45.263 95 49 2 172 264 236 329 1.76e-17 80.9
MS.gene47772.t1 MTR_3g095630 32.653 147 87 4 87 231 15 151 9.48e-17 76.6
MS.gene47772.t1 MTR_2g007500 32.065 184 102 7 39 206 154 330 9.87e-17 79.0
MS.gene47772.t1 MTR_2g007550 30.357 168 89 5 87 235 157 315 2.00e-16 78.2
MS.gene47772.t1 MTR_7g075800 28.464 267 134 12 35 257 174 427 3.48e-16 78.2
MS.gene47772.t1 MTR_8g062310 27.444 266 146 8 38 264 171 428 7.86e-16 77.0
MS.gene47772.t1 MTR_1g059860 27.556 225 121 7 37 224 92 311 8.26e-16 76.3
MS.gene47772.t1 MTR_7g056280 27.556 225 125 8 60 264 367 573 2.70e-15 75.5
MS.gene47772.t1 MTR_6g044572 29.060 234 136 9 37 263 177 387 3.74e-15 74.7
MS.gene47772.t1 MTR_3g094980 33.962 106 60 2 151 246 33 138 3.79e-15 71.6
MS.gene47772.t1 MTR_5g065100 27.391 230 130 6 37 263 153 348 5.01e-15 74.7
MS.gene47772.t1 MTR_6g044560 29.060 234 136 9 37 263 353 563 5.37e-15 74.7
MS.gene47772.t1 MTR_1377s0010 34.234 111 66 3 132 240 31 136 7.00e-15 70.1
MS.gene47772.t1 MTR_8g070950 26.259 278 141 9 38 263 168 433 4.97e-14 71.6
MS.gene47772.t1 MTR_3g106960 38.532 109 60 4 127 231 66 171 9.36e-14 69.3
MS.gene47772.t1 MTR_7g007370 32.195 205 120 6 38 233 125 319 1.63e-13 69.7
MS.gene47772.t1 MTR_4g096730 43.210 81 41 2 184 263 12 88 1.73e-13 65.5
MS.gene47772.t1 MTR_3g108560 37.500 152 66 6 37 172 159 297 1.75e-13 69.3
MS.gene47772.t1 MTR_5g024060 32.407 108 72 1 128 235 76 182 2.83e-13 68.2
MS.gene47772.t1 MTR_5g061410 32.639 144 91 2 37 176 130 271 3.63e-13 68.2
MS.gene47772.t1 MTR_4g098590 28.972 214 120 9 39 235 160 358 4.19e-13 68.6
MS.gene47772.t1 MTR_2g007530 31.111 135 68 3 128 262 226 335 9.92e-13 67.4
MS.gene47772.t1 MTR_8g077460 27.333 150 103 3 114 263 231 374 3.67e-12 65.9
MS.gene47772.t1 MTR_8g062010 29.412 136 91 3 129 263 298 429 8.00e-12 65.1
MS.gene47772.t1 MTR_3g113785 37.755 98 44 3 133 221 3 92 1.15e-11 60.1
MS.gene47772.t1 MTR_3g110010 32.877 146 85 5 37 175 247 386 1.26e-11 64.7
MS.gene47772.t1 MTR_8g469020 25.468 267 138 9 52 264 192 451 1.52e-11 64.3
MS.gene47772.t1 MTR_8g062300 29.412 136 91 3 129 263 345 476 4.65e-11 62.8
MS.gene47772.t1 MTR_5g033200 33.000 100 63 2 133 232 52 147 5.94e-11 60.5
MS.gene47772.t1 MTR_5g008910 28.049 246 117 13 57 263 77 301 7.40e-11 61.6
MS.gene47772.t1 MTR_7g022105 27.876 226 136 7 37 246 194 408 8.82e-11 62.0
MS.gene47772.t1 MTR_1g085120 29.054 148 87 3 37 172 327 468 9.53e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47772.t1 AT3G54910 26.978 278 136 11 38 263 110 372 2.06e-11 63.9
MS.gene47772.t1 AT3G54910 26.978 278 136 11 38 263 110 372 2.06e-11 63.9
MS.gene47772.t1 AT3G54910 26.978 278 136 11 38 263 110 372 2.06e-11 63.9

Find 58 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTAAATGCATGGAATT+TGG 0.120045 7.4:+47070985 MS.gene47772:CDS
AGGAGGGAGTTGTGGATAAT+TGG 0.222183 7.4:+47070902 MS.gene47772:CDS
AGCTGGGTTGAAAGGCATTC+TGG 0.263569 7.4:-47070943 None:intergenic
AATGATTAGATTTCGAAGTT+TGG 0.300529 7.4:-47070765 None:intergenic
GCTTTAAATGCATGGAATTT+GGG 0.312871 7.4:+47070986 MS.gene47772:CDS
TTTCGATGTTCTTGAAGATT+TGG 0.315877 7.4:+47070342 MS.gene47772:CDS
TTTCTCATTTGATGATTAGT+AGG 0.320115 7.4:+47070485 MS.gene47772:CDS
CTCAAAACATGTTCGCTTGA+AGG 0.330623 7.4:+47070964 MS.gene47772:CDS
ATGATTAGATTTCGAAGTTT+GGG 0.348309 7.4:-47070764 None:intergenic
TGTTAATGAAATCAGCTTCA+TGG 0.348888 7.4:+47071106 MS.gene47772:CDS
CTAGAGGAATTGCAAATAGA+TGG 0.356981 7.4:+47070391 MS.gene47772:CDS
ATGTTTGCTTTAATCAAATT+CGG 0.361688 7.4:-47070463 None:intergenic
AGGGAAGTCACTTGGTTTAG+TGG 0.375224 7.4:+47070423 MS.gene47772:CDS
AAGCTGATTTCATTAACATT+TGG 0.384691 7.4:-47071101 None:intergenic
TATTTGCAATTCCTCTAGAA+TGG 0.389646 7.4:-47070386 None:intergenic
GATTTGGTAAAGATTCTATC+AGG 0.396575 7.4:+47070358 MS.gene47772:CDS
GTAAACTCTTATTTAAATGA+TGG 0.404168 7.4:+47071148 MS.gene47772:CDS
ATTGATATCGTGTGAGTAAT+GGG 0.412796 7.4:-47070104 None:intergenic
TTTCATTAACATTTGGTACT+TGG 0.421097 7.4:-47071094 None:intergenic
TTGTGTTTACTTTGCTTCGC+AGG 0.442108 7.4:+47070518 MS.gene47772:CDS
AGGCATTCTGGAATAATTGT+TGG 0.444056 7.4:-47070931 None:intergenic
ATTTGCAATTCCTCTAGAAT+GGG 0.471933 7.4:-47070385 None:intergenic
TGAATTGTTGACAGAAGTCT+AGG 0.474487 7.4:+47070875 MS.gene47772:intron
TAGGATTGAGGAGGGAGTTG+TGG 0.477179 7.4:+47070894 MS.gene47772:CDS
TGCTTCAGCGCTGTGAGAAG+TGG 0.492985 7.4:+47070711 MS.gene47772:CDS
TTGACAGAAGTCTAGGATTG+AGG 0.495090 7.4:+47070882 MS.gene47772:intron
GTACTTGGCATTTAAATCTA+CGG 0.498335 7.4:-47071079 None:intergenic
TGTATCTCACTGCAGGACAT+AGG 0.498962 7.4:+47070635 MS.gene47772:intron
GATTGATATCGTGTGAGTAA+TGG 0.501484 7.4:-47070105 None:intergenic
TTGCAAATAGATGGGGTACA+TGG 0.512169 7.4:+47070400 MS.gene47772:CDS
TTTAAGGAAAACCATGCTGC+TGG 0.513860 7.4:-47070185 None:intergenic
TAGAGGAATTGCAAATAGAT+GGG 0.517788 7.4:+47070392 MS.gene47772:CDS
TGCTGGATATTTCGAGATTG+AGG 0.518337 7.4:-47070168 None:intergenic
GGCATTTAAATCTACGGAAG+AGG 0.520093 7.4:-47071073 None:intergenic
TTCTCATTTGATGATTAGTA+GGG 0.520724 7.4:+47070486 MS.gene47772:CDS
GCTTGAAGGCTTTAAATGCA+TGG 0.521098 7.4:+47070978 MS.gene47772:CDS
GTACATGGAGGGAAGTCACT+TGG 0.536365 7.4:+47070415 MS.gene47772:CDS
TGAAATCAGCTTCATGGACA+AGG 0.537194 7.4:+47071112 MS.gene47772:CDS
GAAGTTTGGGACAACGTTTG+AGG 0.540821 7.4:-47070751 None:intergenic
TCGAAATCTAATCATTCATG+AGG 0.557538 7.4:+47070772 MS.gene47772:CDS
TGTGTTTACTTTGCTTCGCA+GGG 0.569835 7.4:+47070519 MS.gene47772:CDS
AGCGCTGTGAGAAGTGGAAG+TGG 0.570952 7.4:+47070717 MS.gene47772:CDS
TCATTTGATGATTAGTAGGG+AGG 0.572505 7.4:+47070489 MS.gene47772:CDS
GGGAGTTGTGGATAATTGGA+TGG 0.585474 7.4:+47070906 MS.gene47772:CDS
GTTTCAAAATCTAATCCACA+TGG 0.586722 7.4:+47070676 MS.gene47772:CDS
CAGAAGTCTAGGATTGAGGA+GGG 0.589924 7.4:+47070886 MS.gene47772:intron
AAATAGATGGGGTACATGGA+GGG 0.592790 7.4:+47070404 MS.gene47772:CDS
CAAATAGATGGGGTACATGG+AGG 0.601670 7.4:+47070403 MS.gene47772:CDS
ACAGAAGTCTAGGATTGAGG+AGG 0.603412 7.4:+47070885 MS.gene47772:intron
GATTCCTCCTCGTTGAGCAG+AGG 0.618410 7.4:-47070140 None:intergenic
ATCAGGATGTCCCATTCTAG+AGG 0.622759 7.4:+47070375 MS.gene47772:CDS
GAAATCAGCTTCATGGACAA+GGG 0.624249 7.4:+47071113 MS.gene47772:CDS
TGTGAGTAATGGGTAGAAGC+TGG 0.640754 7.4:-47070094 None:intergenic
GCGCTGTGAGAAGTGGAAGT+GGG 0.643767 7.4:+47070718 MS.gene47772:CDS
AGAGGAATTGCAAATAGATG+GGG 0.659055 7.4:+47070393 MS.gene47772:CDS
TCTCGAAATATCCAGCAGCA+TGG 0.675557 7.4:+47070174 MS.gene47772:CDS
TATGCCTCTGCTCAACGAGG+AGG 0.681876 7.4:+47070136 MS.gene47772:CDS
GTCTATGCCTCTGCTCAACG+AGG 0.693871 7.4:+47070133 MS.gene47772:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTGAAATATTTAT+TGG - chr7.4:47070591-47070610 None:intergenic 10.0%
!! TTTGTTAATAAAAAATAAAG+AGG - chr7.4:47070850-47070869 None:intergenic 10.0%
!! AAAAATTATGTGTCTAATGT+TGG + chr7.4:47070543-47070562 MS.gene47772:CDS 20.0%
!! ATGTTTGCTTTAATCAAATT+CGG - chr7.4:47070466-47070485 None:intergenic 20.0%
!!! ATTGTCAATTATTTTCTCTT+TGG + chr7.4:47070802-47070821 MS.gene47772:intron 20.0%
! AATGATTAGATTTCGAAGTT+TGG - chr7.4:47070768-47070787 None:intergenic 25.0%
! ATGATTAGATTTCGAAGTTT+GGG - chr7.4:47070767-47070786 None:intergenic 25.0%
! TTTCATTAACATTTGGTACT+TGG - chr7.4:47071097-47071116 None:intergenic 25.0%
!! AAGCTGATTTCATTAACATT+TGG - chr7.4:47071104-47071123 None:intergenic 25.0%
!! TAGTAGGTAAATTGACTTTA+AGG - chr7.4:47070204-47070223 None:intergenic 25.0%
!! TTCTCATTTGATGATTAGTA+GGG + chr7.4:47070486-47070505 MS.gene47772:CDS 25.0%
!! TTTCTCATTTGATGATTAGT+AGG + chr7.4:47070485-47070504 MS.gene47772:CDS 25.0%
!!! GATTTTGAAACAAAGGAAAA+TGG - chr7.4:47070667-47070686 None:intergenic 25.0%
!!! TGGATTAGATTTTGAAACAA+AGG - chr7.4:47070674-47070693 None:intergenic 25.0%
AAAGAGGTGAAAAAATGTTG+AGG - chr7.4:47070834-47070853 None:intergenic 30.0%
ATTGATATCGTGTGAGTAAT+GGG - chr7.4:47070107-47070126 None:intergenic 30.0%
CCTAAAAACTCTTCATCTAA+GGG + chr7.4:47070312-47070331 MS.gene47772:CDS 30.0%
GTACTTGGCATTTAAATCTA+CGG - chr7.4:47071082-47071101 None:intergenic 30.0%
GTTTCAAAATCTAATCCACA+TGG + chr7.4:47070676-47070695 MS.gene47772:CDS 30.0%
TAGAGGAATTGCAAATAGAT+GGG + chr7.4:47070392-47070411 MS.gene47772:CDS 30.0%
TCCTAAAAACTCTTCATCTA+AGG + chr7.4:47070311-47070330 MS.gene47772:CDS 30.0%
TCGAAATCTAATCATTCATG+AGG + chr7.4:47070772-47070791 MS.gene47772:CDS 30.0%
TGTTAATGAAATCAGCTTCA+TGG + chr7.4:47071106-47071125 MS.gene47772:CDS 30.0%
TTGTCGTTCTTCATTTGAAA+GGG + chr7.4:47070245-47070264 MS.gene47772:intron 30.0%
TTTCAAATGAAGAACGACAA+GGG - chr7.4:47070245-47070264 None:intergenic 30.0%
TTTCGATGTTCTTGAAGATT+TGG + chr7.4:47070342-47070361 MS.gene47772:CDS 30.0%
! GATTTGGTAAAGATTCTATC+AGG + chr7.4:47070358-47070377 MS.gene47772:CDS 30.0%
! GCTTTAAATGCATGGAATTT+GGG + chr7.4:47070986-47071005 MS.gene47772:CDS 30.0%
! TATTTGCAATTCCTCTAGAA+TGG - chr7.4:47070389-47070408 None:intergenic 30.0%
!! ATTTGCAATTCCTCTAGAAT+GGG - chr7.4:47070388-47070407 None:intergenic 30.0%
AGAGGAATTGCAAATAGATG+GGG + chr7.4:47070393-47070412 MS.gene47772:CDS 35.0%
CTACAGCTGAAAATACTAGT+AGG - chr7.4:47070220-47070239 None:intergenic 35.0%
CTAGAGGAATTGCAAATAGA+TGG + chr7.4:47070391-47070410 MS.gene47772:CDS 35.0%
CTTGTCGTTCTTCATTTGAA+AGG + chr7.4:47070244-47070263 MS.gene47772:intron 35.0%
CTTTCAAATGAAGAACGACA+AGG - chr7.4:47070246-47070265 None:intergenic 35.0%
GATTGATATCGTGTGAGTAA+TGG - chr7.4:47070108-47070127 None:intergenic 35.0%
GCATAAAAAGAAGTTCCATG+TGG - chr7.4:47070694-47070713 None:intergenic 35.0%
TGAATTGTTGACAGAAGTCT+AGG + chr7.4:47070875-47070894 MS.gene47772:intron 35.0%
! CCCTTAGATGAAGAGTTTTT+AGG - chr7.4:47070315-47070334 None:intergenic 35.0%
! CTACTAGTATTTTCAGCTGT+AGG + chr7.4:47070218-47070237 MS.gene47772:intron 35.0%
! TAACTTTTGTATCTCACTGC+AGG + chr7.4:47070628-47070647 MS.gene47772:intron 35.0%
! TCATTTGATGATTAGTAGGG+AGG + chr7.4:47070489-47070508 MS.gene47772:CDS 35.0%
!! AGATGAAGAGTTTTTAGGAG+AGG - chr7.4:47070310-47070329 None:intergenic 35.0%
!! AGGCATTCTGGAATAATTGT+TGG - chr7.4:47070934-47070953 None:intergenic 35.0%
!! GATGAAGAGTTTTTAGGAGA+GGG - chr7.4:47070309-47070328 None:intergenic 35.0%
!! GGCTTTAAATGCATGGAATT+TGG + chr7.4:47070985-47071004 MS.gene47772:CDS 35.0%
AAATAGATGGGGTACATGGA+GGG + chr7.4:47070404-47070423 MS.gene47772:CDS 40.0%
CTCAAAACATGTTCGCTTGA+AGG + chr7.4:47070964-47070983 MS.gene47772:CDS 40.0%
GAAATCAGCTTCATGGACAA+GGG + chr7.4:47071113-47071132 MS.gene47772:CDS 40.0%
GGCATTTAAATCTACGGAAG+AGG - chr7.4:47071076-47071095 None:intergenic 40.0%
TGAAATCAGCTTCATGGACA+AGG + chr7.4:47071112-47071131 MS.gene47772:CDS 40.0%
TGCTGGATATTTCGAGATTG+AGG - chr7.4:47070171-47070190 None:intergenic 40.0%
TGTGTTTACTTTGCTTCGCA+GGG + chr7.4:47070519-47070538 MS.gene47772:CDS 40.0%
TTGCAAATAGATGGGGTACA+TGG + chr7.4:47070400-47070419 MS.gene47772:CDS 40.0%
TTGTGTTTACTTTGCTTCGC+AGG + chr7.4:47070518-47070537 MS.gene47772:CDS 40.0%
TTTAAGGAAAACCATGCTGC+TGG - chr7.4:47070188-47070207 None:intergenic 40.0%
! TTGACAGAAGTCTAGGATTG+AGG + chr7.4:47070882-47070901 MS.gene47772:intron 40.0%
!! AAGCGAACATGTTTTGAGCT+GGG - chr7.4:47070962-47070981 None:intergenic 40.0%
!! ATGTTTTGAGCTGGGTTGAA+AGG - chr7.4:47070954-47070973 None:intergenic 40.0%
!! GCTTGAAGGCTTTAAATGCA+TGG + chr7.4:47070978-47070997 MS.gene47772:CDS 40.0%
AGGAGGGAGTTGTGGATAAT+TGG + chr7.4:47070902-47070921 MS.gene47772:CDS 45.0%
AGGGAAGTCACTTGGTTTAG+TGG + chr7.4:47070423-47070442 MS.gene47772:CDS 45.0%
ATCAGGATGTCCCATTCTAG+AGG + chr7.4:47070375-47070394 MS.gene47772:CDS 45.0%
CAAATAGATGGGGTACATGG+AGG + chr7.4:47070403-47070422 MS.gene47772:CDS 45.0%
GGGAGTTGTGGATAATTGGA+TGG + chr7.4:47070906-47070925 MS.gene47772:CDS 45.0%
TCTCGAAATATCCAGCAGCA+TGG + chr7.4:47070174-47070193 MS.gene47772:CDS 45.0%
TGTATCTCACTGCAGGACAT+AGG + chr7.4:47070635-47070654 MS.gene47772:intron 45.0%
! ACAGAAGTCTAGGATTGAGG+AGG + chr7.4:47070885-47070904 MS.gene47772:intron 45.0%
! CAGAAGTCTAGGATTGAGGA+GGG + chr7.4:47070886-47070905 MS.gene47772:intron 45.0%
! GAAGTTTGGGACAACGTTTG+AGG - chr7.4:47070754-47070773 None:intergenic 45.0%
!! CAAGCGAACATGTTTTGAGC+TGG - chr7.4:47070963-47070982 None:intergenic 45.0%
!! TGTGAGTAATGGGTAGAAGC+TGG - chr7.4:47070097-47070116 None:intergenic 45.0%
GTACATGGAGGGAAGTCACT+TGG + chr7.4:47070415-47070434 MS.gene47772:CDS 50.0%
TAGGATTGAGGAGGGAGTTG+TGG + chr7.4:47070894-47070913 MS.gene47772:CDS 50.0%
!! AGCTGGGTTGAAAGGCATTC+TGG - chr7.4:47070946-47070965 None:intergenic 50.0%
AGCGCTGTGAGAAGTGGAAG+TGG + chr7.4:47070717-47070736 MS.gene47772:CDS 55.0%
GATTCCTCCTCGTTGAGCAG+AGG - chr7.4:47070143-47070162 None:intergenic 55.0%
GCGCTGTGAGAAGTGGAAGT+GGG + chr7.4:47070718-47070737 MS.gene47772:CDS 55.0%
GTCTATGCCTCTGCTCAACG+AGG + chr7.4:47070133-47070152 MS.gene47772:CDS 55.0%
TATGCCTCTGCTCAACGAGG+AGG + chr7.4:47070136-47070155 MS.gene47772:CDS 55.0%
TGCTTCAGCGCTGTGAGAAG+TGG + chr7.4:47070711-47070730 MS.gene47772:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 47070087 47071167 47070087 ID=MS.gene47772
chr7.4 mRNA 47070087 47071167 47070087 ID=MS.gene47772.t1;Parent=MS.gene47772
chr7.4 exon 47070087 47070195 47070087 ID=MS.gene47772.t1.exon1;Parent=MS.gene47772.t1
chr7.4 CDS 47070087 47070195 47070087 ID=cds.MS.gene47772.t1;Parent=MS.gene47772.t1
chr7.4 exon 47070302 47070564 47070302 ID=MS.gene47772.t1.exon2;Parent=MS.gene47772.t1
chr7.4 CDS 47070302 47070564 47070302 ID=cds.MS.gene47772.t1;Parent=MS.gene47772.t1
chr7.4 exon 47070650 47070793 47070650 ID=MS.gene47772.t1.exon3;Parent=MS.gene47772.t1
chr7.4 CDS 47070650 47070793 47070650 ID=cds.MS.gene47772.t1;Parent=MS.gene47772.t1
chr7.4 exon 47070889 47071167 47070889 ID=MS.gene47772.t1.exon4;Parent=MS.gene47772.t1
chr7.4 CDS 47070889 47071167 47070889 ID=cds.MS.gene47772.t1;Parent=MS.gene47772.t1
Gene Sequence

>MS.gene47772

ATGTTCACCAGCTTCTACCCATTACTCACACGATATCAATCGATTTGTCTATGCCTCTGCTCAACGAGGAGGAATCGAGAGCCTCAATCTCGAAATATCCAGCAGCATGGTTTTCCTTAAAGTCAATTTACCTACTAGTATTTTCAGCTGTAGGACCCTTGTCGTTCTTCATTTGAAAGGGTTAAGAGTGAATGATCTTTCTCAATTGATTGTAGATTTCCCTCTCCTAAAAACTCTTCATCTAAGGGTTATGCGTTTCGATGTTCTTGAAGATTTGGTAAAGATTCTATCAGGATGTCCCATTCTAGAGGAATTGCAAATAGATGGGGTACATGGAGGGAAGTCACTTGGTTTAGTGGAAAATTCTCAAAGCTTACCGAATTTGATTAAAGCAAACATTTCTCATTTGATGATTAGTAGGGAGGCGAGTGTTGTGTTTACTTTGCTTCGCAGGGCAAAAATTATGTGTCTAATGTTGGTAAGAATATTATATGACTCTCTCCAATAAATATTTCAATGAAATTAGTGTTTATTTCATTTCTAACTTTTGTATCTCACTGCAGGACATAGGTTATATCCATTTTCCTTTGTTTCAAAATCTAATCCACATGGAACTTCTTTTTATGCTTCAGCGCTGTGAGAAGTGGAAGTGGGTTATAGAAGTCCTCAAACGTTGTCCCAAACTTCGAAATCTAATCATTCATGAGGTTTTGTTATTGTCAATTATTTTCTCTTTGGTTTTTACCTCAACATTTTTTCACCTCTTTATTTTTTATTAACAAAATATTTGAATTGTTGACAGAAGTCTAGGATTGAGGAGGGAGTTGTGGATAATTGGATGGATCCAACAATTATTCCAGAATGCCTTTCAACCCAGCTCAAAACATGTTCGCTTGAAGGCTTTAAATGCATGGAATTTGGGATTCAATTTGCAAAATATATTATGCAGAATTCAAAAGTACTGAACATCATGTCAATCAAGAGTGCCTCTTCCGTAGATTTAAATGCCAAGTACCAAATGTTAATGAAATCAGCTTCATGGACAAGGGCTTCTACAAAATGTAAACTCTTATTTAAATGA
Protein sequence

>MS.gene47772.t1

MFTSFYPLLTRYQSICLCLCSTRRNREPQSRNIQQHDFPLLKTLHLRVMRFDVLEDLVKILSGCPILEELQIDGVHGGKSLGLVENSQSLPNLIKANISHLMISREASVVFTLLRRAKIMCLMLDIGYIHFPLFQNLIHMELLFMLQRCEKWKWVIEVLKRCPKLRNLIIHEKSRIEEGVVDNWMDPTIIPECLSTQLKTCSLEGFKCMEFGIQFAKYIMQNSKVLNIMSIKSASSVDLNAKYQMLMKSASWTRASTKCKLLFK