AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47775

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47775.t1 MTR_7g115270 64.352 216 73 2 4 215 133 348 2.07e-84 256
MS.gene47775.t1 MTR_7g056420 67.580 219 42 3 1 215 118 311 7.56e-81 261
MS.gene47775.t1 MTR_7g056430 67.580 219 42 3 1 215 118 311 9.50e-81 262
MS.gene47775.t1 MTR_5g013500 54.639 194 82 3 27 214 116 309 3.06e-63 201
MS.gene47775.t1 MTR_7g056433 52.913 206 92 2 5 210 130 330 4.43e-61 196
MS.gene47775.t1 MTR_7g056417 56.442 163 59 3 1 156 1 158 1.83e-49 159
MS.gene47775.t1 MTR_7g098570 42.130 216 111 7 5 216 135 340 1.35e-39 142
MS.gene47775.t1 MTR_7g098510 41.176 221 108 9 4 216 132 338 5.72e-36 131
MS.gene47775.t1 MTR_3g036250 38.158 228 113 7 7 228 124 329 1.32e-35 129
MS.gene47775.t1 MTR_3g040700 38.767 227 116 7 7 230 162 368 1.54e-34 128
MS.gene47775.t1 MTR_7g034120 39.524 210 111 8 10 216 64 260 4.92e-34 124
MS.gene47775.t1 MTR_7g098480 39.631 217 115 8 4 216 132 336 4.12e-33 124
MS.gene47775.t1 MTR_7g033990 43.192 213 100 8 10 217 139 335 1.60e-31 119
MS.gene47775.t1 MTR_7g032370 36.019 211 108 6 7 212 108 296 3.08e-30 115
MS.gene47775.t1 MTR_3g023630 35.294 221 124 8 1 216 119 325 1.49e-29 113
MS.gene47775.t1 MTR_7g007080 36.967 211 115 7 7 211 129 327 1.62e-29 114
MS.gene47775.t1 MTR_7g033915 39.738 229 99 10 10 230 137 334 9.21e-29 111
MS.gene47775.t1 MTR_5g008950 33.645 214 124 8 4 212 110 310 5.17e-28 109
MS.gene47775.t1 MTR_1g041245 38.889 216 108 9 7 212 129 330 5.68e-28 109
MS.gene47775.t1 MTR_3g087260 38.967 213 110 8 6 211 200 399 3.02e-27 108
MS.gene47775.t1 MTR_3g087260 38.614 101 59 2 5 104 112 210 1.09e-11 63.9
MS.gene47775.t1 MTR_7g032380 35.238 210 93 8 7 212 130 300 3.72e-26 104
MS.gene47775.t1 MTR_3g082890 36.771 223 120 6 7 212 212 430 7.38e-26 104
MS.gene47775.t1 MTR_1g107385 35.780 218 120 8 7 215 166 372 8.78e-26 103
MS.gene47775.t1 MTR_5g008920 34.135 208 125 7 6 211 128 325 2.29e-25 102
MS.gene47775.t1 MTR_0492s0020 35.681 213 110 8 7 211 199 392 9.68e-25 101
MS.gene47775.t1 MTR_0543s0010 35.681 213 110 8 7 211 199 392 1.20e-24 101
MS.gene47775.t1 MTR_2g008320 33.654 208 128 5 6 211 172 371 1.50e-24 100
MS.gene47775.t1 MTR_2g007500 31.982 222 122 6 7 211 121 330 1.23e-23 97.1
MS.gene47775.t1 MTR_2g007450 32.589 224 122 7 7 210 152 366 2.70e-23 97.4
MS.gene47775.t1 MTR_3g108560 36.893 206 118 5 11 212 135 332 2.97e-23 96.7
MS.gene47775.t1 MTR_3g107100 35.945 217 124 8 1 212 126 332 4.08e-23 96.7
MS.gene47775.t1 MTR_3g105060 31.925 213 125 7 5 216 131 324 5.56e-23 95.9
MS.gene47775.t1 MTR_6g045333 33.790 219 130 6 5 215 181 392 9.44e-23 95.9
MS.gene47775.t1 MTR_5g083890 34.043 235 123 9 7 229 142 356 1.09e-22 96.3
MS.gene47775.t1 MTR_7g088260 33.790 219 129 6 5 217 206 414 1.98e-22 95.1
MS.gene47775.t1 MTR_7g056020 35.377 212 107 7 11 211 124 316 3.32e-22 95.1
MS.gene47775.t1 MTR_3g071850 31.081 222 132 4 5 215 144 355 3.76e-22 94.7
MS.gene47775.t1 MTR_7g034115 34.742 213 118 8 7 212 129 327 5.21e-22 93.2
MS.gene47775.t1 MTR_5g045170 31.797 217 132 5 5 215 131 337 6.01e-22 93.2
MS.gene47775.t1 MTR_3g026920 30.531 226 114 7 2 211 159 357 2.37e-21 91.7
MS.gene47775.t1 MTR_1g053025 29.018 224 138 6 1 212 123 337 2.75e-21 91.3
MS.gene47775.t1 MTR_5g007410 29.817 218 140 5 5 215 143 354 4.57e-21 91.3
MS.gene47775.t1 MTR_2g008310 32.692 208 129 6 6 211 118 316 7.47e-21 90.1
MS.gene47775.t1 MTR_3g109982 36.667 210 116 8 7 211 220 417 8.23e-21 90.9
MS.gene47775.t1 MTR_3g107120 34.135 208 124 6 7 211 142 339 3.82e-20 88.2
MS.gene47775.t1 MTR_7g056447 62.687 67 25 0 1 67 119 185 4.64e-20 86.7
MS.gene47775.t1 MTR_3g082890 31.923 260 119 7 7 212 132 387 5.63e-20 88.2
MS.gene47775.t1 MTR_7g081290 43.443 122 61 4 98 212 84 204 1.47e-19 84.7
MS.gene47775.t1 MTR_3g108150 34.842 221 117 8 3 211 124 329 1.67e-19 86.3
MS.gene47775.t1 MTR_7g114710 31.839 223 106 8 15 228 141 326 1.84e-19 85.9
MS.gene47775.t1 MTR_7g075820 28.947 228 136 7 7 229 142 348 1.89e-19 86.3
MS.gene47775.t1 MTR_3g467400 32.420 219 103 9 5 215 132 313 2.41e-19 85.9
MS.gene47775.t1 MTR_7g056277 32.850 207 122 8 11 216 385 575 3.27e-19 86.3
MS.gene47775.t1 MTR_7g056287 32.850 207 122 8 11 216 129 319 4.63e-19 85.1
MS.gene47775.t1 MTR_0009s0080 30.275 218 138 5 5 215 136 346 1.41e-18 84.0
MS.gene47775.t1 MTR_7g060470 31.222 221 128 9 8 212 126 338 1.61e-18 83.6
MS.gene47775.t1 MTR_5g073370 32.367 207 125 7 5 208 126 320 2.82e-18 82.8
MS.gene47775.t1 MTR_3g107160 31.905 210 116 7 7 206 134 326 3.55e-18 82.8
MS.gene47775.t1 MTR_4g098590 32.883 222 113 9 7 211 127 329 7.50e-18 81.6
MS.gene47775.t1 MTR_2g007400 32.547 212 121 8 10 211 148 347 9.50e-18 81.6
MS.gene47775.t1 MTR_6g022500 28.638 213 133 5 6 212 220 419 1.34e-17 81.3
MS.gene47775.t1 MTR_7g026500 30.876 217 127 9 4 212 139 340 2.15e-17 80.5
MS.gene47775.t1 MTR_5g012840 30.769 208 92 6 10 215 109 266 2.96e-17 79.3
MS.gene47775.t1 MTR_7g083740 31.606 193 107 7 29 211 135 312 1.17e-16 78.2
MS.gene47775.t1 MTR_4g080610 33.333 186 108 5 35 212 124 301 1.23e-16 78.2
MS.gene47775.t1 MTR_3g115430 56.452 62 26 1 151 212 11 71 1.74e-16 73.6
MS.gene47775.t1 MTR_7g034110 47.191 89 39 3 132 215 206 291 1.88e-16 77.4
MS.gene47775.t1 MTR_1g108820 29.907 214 127 7 5 206 121 323 4.29e-16 76.6
MS.gene47775.t1 MTR_3g099830 29.954 217 124 8 7 211 118 318 5.01e-16 76.3
MS.gene47775.t1 MTR_3g108560 37.427 171 95 5 11 177 135 297 1.76e-15 74.3
MS.gene47775.t1 MTR_1g108800 32.569 218 114 7 1 206 84 280 2.49e-15 74.3
MS.gene47775.t1 MTR_1g085120 29.665 209 130 6 11 212 291 489 2.52e-15 74.7
MS.gene47775.t1 MTR_1g085120 29.665 209 130 6 11 212 216 414 2.52e-15 74.7
MS.gene47775.t1 MTR_2g020180 32.749 171 88 5 55 212 5 161 3.37e-15 72.0
MS.gene47775.t1 MTR_7g055943 31.944 216 126 7 6 214 159 360 4.78e-15 73.9
MS.gene47775.t1 MTR_5g073420 29.493 217 125 8 1 212 127 320 2.12e-14 71.6
MS.gene47775.t1 MTR_5g073340 28.571 210 134 7 4 205 99 300 5.10e-14 70.1
MS.gene47775.t1 MTR_5g063950 27.358 212 138 6 10 215 107 308 5.61e-14 70.5
MS.gene47775.t1 MTR_4g039440 30.952 210 135 6 6 211 148 351 8.92e-14 70.1
MS.gene47775.t1 MTR_5g058100 32.195 205 116 9 10 206 131 320 1.07e-13 69.7
MS.gene47775.t1 MTR_6g013160 31.980 197 107 9 5 177 159 352 1.92e-13 68.9
MS.gene47775.t1 MTR_2g007360 28.829 222 112 8 16 211 115 316 2.00e-13 68.9
MS.gene47775.t1 MTR_5g031970 29.954 217 112 8 5 215 120 302 2.47e-13 68.6
MS.gene47775.t1 MTR_3g110010 35.714 182 100 8 7 183 220 389 2.76e-13 68.9
MS.gene47775.t1 MTR_5g039470 30.000 220 137 8 5 215 99 310 3.54e-13 67.8
MS.gene47775.t1 MTR_6g040270 27.830 212 141 7 1 212 122 321 2.17e-12 65.9
MS.gene47775.t1 MTR_2g005990 28.372 215 133 7 6 211 137 339 2.54e-12 65.9
MS.gene47775.t1 MTR_7g007340 29.384 211 126 8 7 211 108 301 2.90e-12 65.5
MS.gene47775.t1 MTR_1g108820 30.270 185 110 6 5 177 121 298 1.10e-11 63.9
MS.gene47775.t1 MTR_6g022360 28.507 221 132 7 6 215 149 354 1.18e-11 63.9
MS.gene47775.t1 MTR_1g066830 27.778 216 141 6 6 215 126 332 1.18e-11 63.9
MS.gene47775.t1 MTR_7g021950 29.902 204 130 7 7 204 164 360 1.42e-11 63.9
MS.gene47775.t1 MTR_3g113785 47.692 65 27 1 155 212 14 78 1.47e-11 59.3
MS.gene47775.t1 MTR_7g021990 29.384 211 136 7 7 211 164 367 1.51e-11 63.5
MS.gene47775.t1 MTR_7g022105 28.095 210 140 5 7 211 165 368 1.92e-11 63.2
MS.gene47775.t1 MTR_5g058000 31.163 215 118 8 5 211 124 316 2.12e-11 63.2
MS.gene47775.t1 MTR_5g061410 29.240 171 111 5 10 177 104 267 2.74e-11 62.0
MS.gene47775.t1 MTR_8g085430 53.333 60 22 2 159 212 213 272 3.04e-11 62.4
MS.gene47775.t1 MTR_1g085120 31.034 174 105 5 11 177 303 468 3.05e-11 62.8
MS.gene47775.t1 MTR_1089s0010 27.536 207 129 7 10 212 130 319 3.43e-11 62.4
MS.gene47775.t1 MTR_7g075800 23.140 242 143 8 7 215 141 372 9.41e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGCAATTCCTCTAAAA+TGG 0.161153 7.4:+47114331 None:intergenic
CTCAAAACATGCTTGCTTAA+AGG 0.172644 7.4:-47113642 MS.gene47775:CDS
ATATTTATTTGTACATAATA+AGG 0.228390 7.4:-47114306 MS.gene47775:CDS
ACACTTGTCTGGTGTACTTT+TGG 0.230385 7.4:-47114393 MS.gene47775:CDS
AGTTGTGTTGAAAGGCATTC+TGG 0.307205 7.4:+47113663 None:intergenic
TATATCATCCAGCTTCTATC+TGG 0.335498 7.4:-47114359 MS.gene47775:CDS
TCTCACAATGATTACGCTTA+AGG 0.361402 7.4:+47113892 None:intergenic
TCAGCATCTGCGTGCAGAAT+TGG 0.380986 7.4:-47114156 MS.gene47775:intron
TTATGCTCACTTTGCTCTGC+AGG 0.382170 7.4:-47114187 MS.gene47775:CDS
AGGCATTCTGGAATATTTGC+TGG 0.397575 7.4:+47113675 None:intergenic
AGACCTTTCTCAACTGGTTG+TGG 0.399921 7.4:-47114438 MS.gene47775:CDS
TCAAAATCTTACCATTCATC+AGG 0.400799 7.4:-47113826 MS.gene47775:intron
AGTGAAAGACCTTTCTCAAC+TGG 0.408908 7.4:-47114444 MS.gene47775:CDS
TGTTGACAGGACTTGGAGAA+TGG 0.438134 7.4:-47113726 MS.gene47775:intron
GCTTGCAATTCCTCTAAAAT+GGG 0.458474 7.4:+47114332 None:intergenic
GATTGCGGAACTTAAGATGT+TGG 0.471118 7.4:+47113934 None:intergenic
AGAGGAAGTTGTGGATAGTT+GGG 0.474055 7.4:-47113703 MS.gene47775:CDS
GAGAGGAAGTTGTGGATAGT+TGG 0.479744 7.4:-47113704 MS.gene47775:CDS
AACCTCAATCTTGAAATGTC+CGG 0.492837 7.4:-47114536 None:intergenic
AGCGTAATCATTGTGAGAAG+TGG 0.507662 7.4:-47113887 MS.gene47775:CDS
CATCAATAAAACCTGATGAA+TGG 0.519118 7.4:+47113815 None:intergenic
TGGGACATCCAGATAGAAGC+TGG 0.524755 7.4:+47114351 None:intergenic
TCGTTGTTCTTCATTTGCAA+CGG 0.536924 7.4:-47114472 MS.gene47775:CDS
AATCCACAACCAGTTGAGAA+AGG 0.541657 7.4:+47114435 None:intergenic
TATTTGTACATAATAAGGAA+TGG 0.542284 7.4:-47114301 MS.gene47775:CDS
ATCATTGTGAGAAGTGGATC+TGG 0.545999 7.4:-47113881 MS.gene47775:CDS
TATGCTCACTTTGCTCTGCA+GGG 0.565940 7.4:-47114186 MS.gene47775:CDS
CTTAAGGATAAGCTCCATGT+TGG 0.567493 7.4:+47113908 None:intergenic
GGAGAATGGAGAGGAAGTTG+TGG 0.577606 7.4:-47113712 MS.gene47775:CDS
TGCGGAACTTAAGATGTTGG+AGG 0.590690 7.4:+47113937 None:intergenic
ATGTTTGCAGTGATCAACTT+CGG 0.596642 7.4:+47114236 None:intergenic
CAATCTTGAAATGTCCGGCA+TGG 0.608926 7.4:-47114531 None:intergenic
ACGAGGTAATGTTACCATGC+CGG 0.615120 7.4:+47114517 None:intergenic
GCTCCATGTTGGTTAGATTG+CGG 0.616847 7.4:+47113919 None:intergenic
GGAAGTTGTGGATAGTTGGG+TGG 0.619960 7.4:-47113700 MS.gene47775:CDS
ACAGGACTTGGAGAATGGAG+AGG 0.667756 7.4:-47113721 MS.gene47775:intron
GTTCCGCAATCTAACCAACA+TGG 0.671128 7.4:-47113922 MS.gene47775:CDS
TTGCAAATGAAGAACAACGA+GGG 0.693329 7.4:+47114475 None:intergenic
AAGATGTTGGAGGTAACATG+TGG 0.703188 7.4:+47113947 None:intergenic
CTACAATTGAAAATGCTACG+AGG 0.748964 7.4:+47114500 None:intergenic
GACAGACTTCGATACTACAG+CGG 0.780600 7.4:-47112844 MS.gene47775:intron
GTTGCAAATGAAGAACAACG+AGG 0.797581 7.4:+47114474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATTTGTACATAATA+AGG - chr7.4:47113030-47113049 MS.gene47775:intron 10.0%
!!! GTTAATTTTCTTTTTAATAA+AGG - chr7.4:47113216-47113235 MS.gene47775:intron 10.0%
!! TATATATCAAATTGGAAAAT+AGG + chr7.4:47113578-47113597 None:intergenic 15.0%
!!! TTTTTCATTTATTTTCTTAG+TGG - chr7.4:47114083-47114102 MS.gene47775:intron 15.0%
!! AAATAAATGAAAAAGTTGAG+AGG + chr7.4:47114077-47114096 None:intergenic 20.0%
!! ATAAAAATTGAATTGTTGAC+AGG - chr7.4:47113597-47113616 MS.gene47775:intron 20.0%
!! TAAAAAGAAAAGAAAAAGCT+AGG + chr7.4:47113547-47113566 None:intergenic 20.0%
!! TATTTGTACATAATAAGGAA+TGG - chr7.4:47113035-47113054 MS.gene47775:intron 20.0%
!! TTATTTGATTGATGAAAGTT+AGG - chr7.4:47113886-47113905 MS.gene47775:CDS 20.0%
!! TTTGAAAATTTAAATGTCAG+AGG + chr7.4:47114017-47114036 None:intergenic 20.0%
! AAATTTCCAACTACATAGAT+TGG - chr7.4:47114194-47114213 MS.gene47775:CDS 25.0%
! CAGAATTGGTAAGAATATTA+TGG - chr7.4:47113194-47113213 MS.gene47775:intron 25.0%
!! AAGCTAGTTTCATCAAAATT+TGG + chr7.4:47113834-47113853 None:intergenic 25.0%
!! TAACTTTTGTAAATCACAAC+AGG - chr7.4:47113366-47113385 MS.gene47775:intron 25.0%
!!! ATGGTAAGATTTTGAAGTTT+AGG + chr7.4:47113505-47113524 None:intergenic 25.0%
!!! TATATCGATGTGTCATTTTT+TGG - chr7.4:47114259-47114278 MS.gene47775:CDS 25.0%
!!! TTCATTTATTTTCTTAGTGG+TGG - chr7.4:47114086-47114105 MS.gene47775:intron 25.0%
ATCCTACCTAGTATCAATAA+GGG + chr7.4:47113326-47113345 None:intergenic 30.0%
CATCAATAAAACCTGATGAA+TGG + chr7.4:47113524-47113543 None:intergenic 30.0%
CTTTAACCCTTATTGATACT+AGG - chr7.4:47113317-47113336 MS.gene47775:intron 30.0%
GATTGAAAGTGAAAATGTGT+TGG - chr7.4:47114281-47114300 MS.gene47775:CDS 30.0%
TAAGAATTTACATGTTGACG+AGG + chr7.4:47113869-47113888 None:intergenic 30.0%
TCAAAATCTTACCATTCATC+AGG - chr7.4:47113510-47113529 MS.gene47775:intron 30.0%
! AAATTGGAAAATAGGTGTTG+AGG + chr7.4:47113570-47113589 None:intergenic 30.0%
! ATTAGCTTCTACATATGCAA+TGG - chr7.4:47113947-47113966 MS.gene47775:CDS 30.0%
! GTCTTCAATTAAAAGCATGT+CGG + chr7.4:47114232-47114251 None:intergenic 30.0%
!!! ATGTTTTGAGTTGTGTTGAA+AGG + chr7.4:47113684-47113703 None:intergenic 30.0%
!!! ATTTTTTGGTAGTCTTGTTG+TGG - chr7.4:47114144-47114163 MS.gene47775:intron 30.0%
!!! TATCGATGTCTGTCATTTTT+TGG - chr7.4:47114130-47114149 MS.gene47775:intron 30.0%
AACCCTTATTGATACTAGGT+AGG - chr7.4:47113321-47113340 MS.gene47775:intron 35.0%
ACTACACCAATCTATGTAGT+TGG + chr7.4:47114203-47114222 None:intergenic 35.0%
ATGTTTGCAGTGATCAACTT+CGG + chr7.4:47113103-47113122 None:intergenic 35.0%
ATTGAATTGTTGACAGGACT+TGG - chr7.4:47113603-47113622 MS.gene47775:intron 35.0%
CTACAATTGAAAATGCTACG+AGG + chr7.4:47112839-47112858 None:intergenic 35.0%
CTCAAAAAACTACACTTGTC+TGG - chr7.4:47112932-47112951 MS.gene47775:intron 35.0%
CTCAAAACATGCTTGCTTAA+AGG - chr7.4:47113694-47113713 MS.gene47775:CDS 35.0%
GATCCTACCTAGTATCAATA+AGG + chr7.4:47113327-47113346 None:intergenic 35.0%
GTAAGATCTGATGGTTTCAA+GGG - chr7.4:47113969-47113988 MS.gene47775:intron 35.0%
GTGCTTGACATTTGTATCTA+CGG + chr7.4:47113812-47113831 None:intergenic 35.0%
TATATCATCCAGCTTCTATC+TGG - chr7.4:47112977-47112996 MS.gene47775:intron 35.0%
TATGCAATGGTAAGATCTGA+TGG - chr7.4:47113960-47113979 MS.gene47775:intron 35.0%
TCACACATATCATACTCGAA+GGG + chr7.4:47113261-47113280 None:intergenic 35.0%
TCGTTGTTCTTCATTTGCAA+CGG - chr7.4:47112864-47112883 MS.gene47775:intron 35.0%
TCTCACAATGATTACGCTTA+AGG + chr7.4:47113447-47113466 None:intergenic 35.0%
TTCGATGATTCTACTGTCAT+CGG + chr7.4:47114371-47114390 None:intergenic 35.0%
TTGCAAATGAAGAACAACGA+GGG + chr7.4:47112864-47112883 None:intergenic 35.0%
! AGCTTGCAATTCCTCTAAAA+TGG + chr7.4:47113008-47113027 None:intergenic 35.0%
! CTCGTAGCATTTTCAATTGT+AGG - chr7.4:47112837-47112856 MS.gene47775:CDS 35.0%
!! GCTTGCAATTCCTCTAAAAT+GGG + chr7.4:47113007-47113026 None:intergenic 35.0%
!!! AAGTGTAGTTTTTTGAGGAG+AGG + chr7.4:47112929-47112948 None:intergenic 35.0%
!!! AGTGGTGGTTGTTTTTTACT+TGG - chr7.4:47114101-47114120 MS.gene47775:intron 35.0%
!!! CAGACAAGTGTAGTTTTTTG+AGG + chr7.4:47112934-47112953 None:intergenic 35.0%
!!! GTGGTGGTTGTTTTTTACTT+GGG - chr7.4:47114102-47114121 MS.gene47775:intron 35.0%
AAGATGTTGGAGGTAACATG+TGG + chr7.4:47113392-47113411 None:intergenic 40.0%
AATCCACAACCAGTTGAGAA+AGG + chr7.4:47112904-47112923 None:intergenic 40.0%
AGAGGAAGTTGTGGATAGTT+GGG - chr7.4:47113633-47113652 MS.gene47775:CDS 40.0%
AGCGTAATCATTGTGAGAAG+TGG - chr7.4:47113449-47113468 MS.gene47775:intron 40.0%
AGTGAAAGACCTTTCTCAAC+TGG - chr7.4:47112892-47112911 MS.gene47775:intron 40.0%
ATCATTGTGAGAAGTGGATC+TGG - chr7.4:47113455-47113474 MS.gene47775:intron 40.0%
CAGAGGTCAAAATGAAACAG+AGG + chr7.4:47114000-47114019 None:intergenic 40.0%
CTTAAGGATAAGCTCCATGT+TGG + chr7.4:47113431-47113450 None:intergenic 40.0%
GACATTTGTATCTACGGAAG+AGG + chr7.4:47113806-47113825 None:intergenic 40.0%
GAGAAGAAGAGAGAAAGTGA+AGG - chr7.4:47114396-47114415 MS.gene47775:CDS 40.0%
GATTGCGGAACTTAAGATGT+TGG + chr7.4:47113405-47113424 None:intergenic 40.0%
GGTAAGATCTGATGGTTTCA+AGG - chr7.4:47113968-47113987 MS.gene47775:intron 40.0%
GTCACACATATCATACTCGA+AGG + chr7.4:47113262-47113281 None:intergenic 40.0%
GTTGCAAATGAAGAACAACG+AGG + chr7.4:47112865-47112884 None:intergenic 40.0%
! ACACTTGTCTGGTGTACTTT+TGG - chr7.4:47112943-47112962 MS.gene47775:intron 40.0%
! ATCTGGATGTCCCATTTTAG+AGG - chr7.4:47112994-47113013 MS.gene47775:intron 40.0%
! GAAACTAGCTTCGTGTACAA+GGG - chr7.4:47113843-47113862 MS.gene47775:CDS 40.0%
! TGAAACTAGCTTCGTGTACA+AGG - chr7.4:47113842-47113861 MS.gene47775:CDS 40.0%
!! AGGCATTCTGGAATATTTGC+TGG + chr7.4:47113664-47113683 None:intergenic 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG + chr7.4:47113676-47113695 None:intergenic 40.0%
!! TAGTCTTGTTGTGGACTTGT+GGG - chr7.4:47114153-47114172 MS.gene47775:intron 40.0%
ACGAGGTAATGTTACCATGC+CGG + chr7.4:47112822-47112841 None:intergenic 45.0%
AGACCTTTCTCAACTGGTTG+TGG - chr7.4:47112898-47112917 MS.gene47775:intron 45.0%
ATCTGATGGTTTCAAGGGCA+TGG - chr7.4:47113974-47113993 MS.gene47775:intron 45.0%
GACAGACTTCGATACTACAG+CGG - chr7.4:47114492-47114511 MS.gene47775:CDS 45.0%
GAGAGGAAGTTGTGGATAGT+TGG - chr7.4:47113632-47113651 MS.gene47775:CDS 45.0%
GTTCCGCAATCTAACCAACA+TGG - chr7.4:47113414-47113433 MS.gene47775:intron 45.0%
TATGCTCACTTTGCTCTGCA+GGG - chr7.4:47113150-47113169 MS.gene47775:intron 45.0%
TGCGGAACTTAAGATGTTGG+AGG + chr7.4:47113402-47113421 None:intergenic 45.0%
TGTTGACAGGACTTGGAGAA+TGG - chr7.4:47113610-47113629 MS.gene47775:intron 45.0%
TTATGCTCACTTTGCTCTGC+AGG - chr7.4:47113149-47113168 MS.gene47775:intron 45.0%
! GCTCCATGTTGGTTAGATTG+CGG + chr7.4:47113420-47113439 None:intergenic 45.0%
! TTGCTACTTAAGCCTCTACC+AGG + chr7.4:47114317-47114336 None:intergenic 45.0%
!! GTAGTCTTGTTGTGGACTTG+TGG - chr7.4:47114152-47114171 MS.gene47775:intron 45.0%
!!! AATTTTTATATATATCAAAT+TGG + chr7.4:47113586-47113605 None:intergenic 5.0%
ACAGGACTTGGAGAATGGAG+AGG - chr7.4:47113615-47113634 MS.gene47775:intron 50.0%
CGATACATAGCTGTCACAGC+AGG + chr7.4:47114473-47114492 None:intergenic 50.0%
GGAAGTTGTGGATAGTTGGG+TGG - chr7.4:47113636-47113655 MS.gene47775:CDS 50.0%
GGACTTGTGGGAAGGAGTAA+TGG - chr7.4:47114165-47114184 MS.gene47775:CDS 50.0%
GGAGAATGGAGAGGAAGTTG+TGG - chr7.4:47113624-47113643 MS.gene47775:intron 50.0%
TCAGCATCTGCGTGCAGAAT+TGG - chr7.4:47113180-47113199 MS.gene47775:intron 50.0%
TGGGACATCCAGATAGAAGC+TGG + chr7.4:47112988-47113007 None:intergenic 50.0%
! CTTGTTGTGGACTTGTGGGA+AGG - chr7.4:47114157-47114176 MS.gene47775:CDS 50.0%
! TGTGTTGGCACTTTACGACC+TGG - chr7.4:47114296-47114315 MS.gene47775:CDS 50.0%
GGCACTTTACGACCTGGTAG+AGG - chr7.4:47114302-47114321 MS.gene47775:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 47112815 47114543 47112815 ID=MS.gene47775
chr7.4 mRNA 47112815 47114543 47112815 ID=MS.gene47775.t1;Parent=MS.gene47775
chr7.4 exon 47114157 47114543 47114157 ID=MS.gene47775.t1.exon1;Parent=MS.gene47775.t1
chr7.4 CDS 47114157 47114543 47114157 ID=cds.MS.gene47775.t1;Parent=MS.gene47775.t1
chr7.4 exon 47113827 47113970 47113827 ID=MS.gene47775.t1.exon2;Parent=MS.gene47775.t1
chr7.4 CDS 47113827 47113970 47113827 ID=cds.MS.gene47775.t1;Parent=MS.gene47775.t1
chr7.4 exon 47113625 47113739 47113625 ID=MS.gene47775.t1.exon3;Parent=MS.gene47775.t1
chr7.4 CDS 47113625 47113739 47113625 ID=cds.MS.gene47775.t1;Parent=MS.gene47775.t1
chr7.4 exon 47112815 47112861 47112815 ID=MS.gene47775.t1.exon4;Parent=MS.gene47775.t1
chr7.4 CDS 47112815 47112861 47112815 ID=cds.MS.gene47775.t1;Parent=MS.gene47775.t1
Gene Sequence

>MS.gene47775

ATGTCCGGCATGGTAACATTACCTCGTAGCATTTTCAATTGTAGGACCCTCGTTGTTCTTCATTTGCAACGGATTACAGTGAAAGACCTTTCTCAACTGGTTGTGGATTTTCCTCTCCTCAAAAAACTACACTTGTCTGGTGTACTTTTGGAACGTGCTGAATATATCATCCAGCTTCTATCTGGATGTCCCATTTTAGAGGAATTGCAAGCTGAATATTTATTTGTACATAATAAGGAATGGCTTGTTTCAATGAATTTTATACGAGAAAAGCTTCGAAGCTTACCGAAGTTGATCACTGCAAACATTACTAAATCGACTCATTCTTTGACGTTTATGCTCACTTTGCTCTGCAGGGCAGAGTCTCAGCATCTGCGTGCAGAATTGGTAAGAATATTATGGTTAATTTTCTTTTTAATAAAGGTTGTTAATTATAGTTTTTGCCCTTCGAGTATGATATGTGTGACGATTCTGTGTTACGAATTTGAGTTATGATCTTGCACTTTAACCCTTATTGATACTAGGTAGGATCTAGTTTTCGAGCGTATTTCTAACTTTTGTAAATCACAACAGGCCACATGTTACCTCCAACATCTTAAGTTCCGCAATCTAACCAACATGGAGCTTATCCTTAAGCGTAATCATTGTGAGAAGTGGATCTGGTTGCTAGAAGTGCTGAAACGTTGTCCTAAACTTCAAAATCTTACCATTCATCAGGTTTTATTGATGCCTAGCTTTTTCTTTTCTTTTTACCTCAACACCTATTTTCCAATTTGATATATATAAAAATTGAATTGTTGACAGGACTTGGAGAATGGAGAGGAAGTTGTGGATAGTTGGGTGGATCCAGCAAATATTCCAGAATGCCTTTCAACACAACTCAAAACATGCTTGCTTAAAGGCTATAAATGCACAGAATGTGAGCTTCAATTTGCAAAATATATTATGCATAATTCAAAAGTACTGAACACAATTTCAATCAAGAGTGCCTCTTCCGTAGATACAAATGTCAAGCACCAAATTTTGATGAAACTAGCTTCGTGTACAAGGGCCTCGTCAACATGTAAATTCTTATTTGATTGATGAAAGTTAGGTCATAGTTTACAATAGCTCTTACATGTCTACTTTTTATATTAGCTTCTACATATGCAATGGTAAGATCTGATGGTTTCAAGGGCATGGCCTCTGTTTCATTTTGACCTCTGACATTTAAATTTTCAAATATATATTGACTTTCACGTAATTAATTAATGCTAGATCCTCTCAACTTTTTCATTTATTTTCTTAGTGGTGGTTGTTTTTTACTTGGGAATTATATCGATGTCTGTCATTTTTTGGTAGTCTTGTTGTGGACTTGTGGGAAGGAGTAATGGATATCAAAATTTCCAACTACATAGATTGGTGTAGTAGAAAGCCGACATGCTTTTAATTGAAGACATGTTACTATATCGATGTGTCATTTTTTGGATTGAAAGTGAAAATGTGTTGGCACTTTACGACCTGGTAGAGGCTTAAGTAGCAACTCTCGATAAACTCTTCTACTACTACTTTTGCCGATGACAGTAGAATCATCGAAATAAAGAGAAGAAGAGAGAAAGTGAAGGTCGTTGTTGAAGCAATAGCTATTGATGCTTGCTTGCTTGCTAACTTTAGAACCTGCTGTGACAGCTATGTATCGACAGACTTCGATACTACAGCGGTAGTAGATCGCCAACATGCTATCAGTTGA
Protein sequence

>MS.gene47775.t1

MSGMVTLPRSIFNCRTLVVLHLQRITVKDLSQLVVDFPLLKKLHLSGVLLERAEYIIQLLSGCPILEELQAEYLFVHNKEWLVSMNFIREKLRSLPKLITANITKSTHSLTFMLTLLCRAESQHLRAELATCYLQHLKFRNLTNMELILKRNHCEKWIWLLEVLKRCPKLQNLTIHQDLENGEEVVDSWVDPANIPECLSTQLKTCLLKGYKCTEYFDTTAVVDRQHAIS