Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49017.t1 | XP_013448651.1 | 58 | 181 | 75 | 1 | 1 | 181 | 125 | 304 | 9.80E-47 | 196.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49017.t1 | Q9FM94 | 27.1 | 221 | 114 | 8 | 7 | 186 | 118 | 332 | 4.1e-09 | 63.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49017.t1 | A0A072U0K8 | 58.0 | 181 | 75 | 1 | 1 | 181 | 125 | 304 | 7.1e-47 | 196.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49017.t1 | MTR_7g056433 | 58.011 | 181 | 75 | 1 | 1 | 181 | 125 | 304 | 1.88e-62 | 199 |
MS.gene49017.t1 | MTR_7g115270 | 43.784 | 185 | 94 | 4 | 6 | 181 | 134 | 317 | 6.20e-38 | 135 |
MS.gene49017.t1 | MTR_5g013500 | 46.951 | 164 | 77 | 3 | 28 | 181 | 116 | 279 | 7.96e-37 | 132 |
MS.gene49017.t1 | MTR_7g056417 | 48.344 | 151 | 70 | 4 | 5 | 148 | 4 | 153 | 9.35e-32 | 113 |
MS.gene49017.t1 | MTR_7g098570 | 41.053 | 190 | 96 | 7 | 3 | 183 | 130 | 312 | 2.09e-29 | 114 |
MS.gene49017.t1 | MTR_3g036250 | 41.143 | 175 | 80 | 6 | 5 | 174 | 121 | 277 | 3.48e-28 | 108 |
MS.gene49017.t1 | MTR_0009s0080 | 39.548 | 177 | 97 | 5 | 5 | 174 | 135 | 308 | 2.37e-27 | 107 |
MS.gene49017.t1 | MTR_7g098510 | 38.710 | 186 | 98 | 7 | 6 | 183 | 133 | 310 | 6.78e-27 | 105 |
MS.gene49017.t1 | MTR_7g056420 | 41.111 | 180 | 72 | 6 | 2 | 174 | 118 | 270 | 2.86e-26 | 105 |
MS.gene49017.t1 | MTR_7g056430 | 41.111 | 180 | 72 | 6 | 2 | 174 | 118 | 270 | 2.91e-26 | 105 |
MS.gene49017.t1 | MTR_3g040700 | 39.888 | 178 | 82 | 7 | 4 | 174 | 156 | 315 | 5.22e-26 | 104 |
MS.gene49017.t1 | MTR_7g034120 | 41.714 | 175 | 88 | 7 | 6 | 174 | 56 | 222 | 1.13e-24 | 99.0 |
MS.gene49017.t1 | MTR_5g007410 | 38.983 | 177 | 98 | 6 | 6 | 174 | 143 | 317 | 2.37e-24 | 99.8 |
MS.gene49017.t1 | MTR_7g007080 | 35.323 | 201 | 115 | 7 | 8 | 206 | 129 | 316 | 6.44e-24 | 97.8 |
MS.gene49017.t1 | MTR_1g041245 | 40.000 | 180 | 95 | 7 | 7 | 181 | 128 | 299 | 7.73e-23 | 94.7 |
MS.gene49017.t1 | MTR_5g073420 | 39.106 | 179 | 89 | 7 | 8 | 182 | 134 | 296 | 8.82e-23 | 94.7 |
MS.gene49017.t1 | MTR_7g098480 | 36.066 | 183 | 105 | 5 | 6 | 183 | 133 | 308 | 1.84e-22 | 94.7 |
MS.gene49017.t1 | MTR_6g022500 | 34.359 | 195 | 106 | 7 | 8 | 190 | 221 | 405 | 4.80e-22 | 93.6 |
MS.gene49017.t1 | MTR_1g053025 | 32.967 | 182 | 100 | 6 | 7 | 175 | 128 | 300 | 7.15e-22 | 92.4 |
MS.gene49017.t1 | MTR_7g033990 | 41.463 | 164 | 87 | 4 | 11 | 174 | 139 | 293 | 5.18e-21 | 90.1 |
MS.gene49017.t1 | MTR_5g058000 | 35.789 | 190 | 107 | 8 | 6 | 190 | 124 | 303 | 5.30e-21 | 89.7 |
MS.gene49017.t1 | MTR_1g085120 | 37.572 | 173 | 99 | 5 | 8 | 174 | 299 | 468 | 6.27e-21 | 90.1 |
MS.gene49017.t1 | MTR_1g085120 | 37.572 | 173 | 99 | 5 | 8 | 174 | 287 | 456 | 8.93e-21 | 90.1 |
MS.gene49017.t1 | MTR_1g085120 | 37.572 | 173 | 99 | 5 | 8 | 174 | 212 | 381 | 9.82e-21 | 89.7 |
MS.gene49017.t1 | MTR_3g023630 | 36.667 | 180 | 101 | 6 | 6 | 183 | 126 | 294 | 9.94e-21 | 89.0 |
MS.gene49017.t1 | MTR_7g033915 | 33.880 | 183 | 88 | 7 | 6 | 181 | 129 | 285 | 1.18e-20 | 88.6 |
MS.gene49017.t1 | MTR_5g008950 | 31.765 | 170 | 108 | 4 | 6 | 174 | 111 | 273 | 7.61e-20 | 86.7 |
MS.gene49017.t1 | MTR_7g088260 | 37.363 | 182 | 93 | 6 | 2 | 174 | 202 | 371 | 7.69e-20 | 87.0 |
MS.gene49017.t1 | MTR_6g045333 | 36.667 | 180 | 106 | 4 | 1 | 174 | 176 | 353 | 7.79e-20 | 87.0 |
MS.gene49017.t1 | MTR_0492s0020 | 38.012 | 171 | 93 | 5 | 7 | 174 | 198 | 358 | 2.04e-19 | 85.9 |
MS.gene49017.t1 | MTR_0543s0010 | 38.012 | 171 | 93 | 5 | 7 | 174 | 198 | 358 | 2.35e-19 | 85.5 |
MS.gene49017.t1 | MTR_1g066830 | 32.243 | 214 | 119 | 8 | 8 | 200 | 127 | 335 | 2.89e-19 | 85.1 |
MS.gene49017.t1 | MTR_3g071850 | 35.028 | 177 | 107 | 4 | 2 | 172 | 140 | 314 | 3.13e-19 | 85.5 |
MS.gene49017.t1 | MTR_7g032380 | 33.146 | 178 | 81 | 6 | 7 | 181 | 129 | 271 | 3.78e-19 | 84.3 |
MS.gene49017.t1 | MTR_5g083890 | 36.066 | 183 | 101 | 7 | 7 | 182 | 141 | 314 | 5.21e-19 | 84.7 |
MS.gene49017.t1 | MTR_2g007450 | 31.313 | 198 | 108 | 6 | 7 | 182 | 151 | 342 | 9.28e-19 | 84.0 |
MS.gene49017.t1 | MTR_5g061410 | 31.953 | 169 | 107 | 3 | 10 | 174 | 103 | 267 | 1.01e-18 | 82.0 |
MS.gene49017.t1 | MTR_7g032370 | 34.555 | 191 | 102 | 9 | 8 | 193 | 108 | 280 | 1.05e-18 | 83.2 |
MS.gene49017.t1 | MTR_5g045170 | 32.828 | 198 | 120 | 5 | 6 | 194 | 131 | 324 | 1.15e-18 | 83.6 |
MS.gene49017.t1 | MTR_6g011460 | 35.602 | 191 | 106 | 7 | 8 | 190 | 166 | 347 | 2.40e-18 | 82.8 |
MS.gene49017.t1 | MTR_5g073370 | 37.430 | 179 | 100 | 6 | 6 | 180 | 126 | 296 | 4.63e-18 | 81.6 |
MS.gene49017.t1 | MTR_3g108560 | 36.747 | 166 | 99 | 4 | 12 | 174 | 135 | 297 | 4.71e-18 | 80.9 |
MS.gene49017.t1 | MTR_2g007500 | 33.333 | 180 | 97 | 5 | 7 | 172 | 120 | 290 | 5.80e-18 | 80.9 |
MS.gene49017.t1 | MTR_3g108560 | 36.842 | 171 | 101 | 5 | 12 | 178 | 135 | 302 | 5.84e-18 | 81.3 |
MS.gene49017.t1 | MTR_3g107100 | 32.323 | 198 | 108 | 7 | 7 | 198 | 131 | 308 | 1.10e-17 | 80.9 |
MS.gene49017.t1 | MTR_6g040270 | 33.000 | 200 | 108 | 8 | 11 | 194 | 130 | 319 | 1.15e-17 | 80.5 |
MS.gene49017.t1 | MTR_3g110010 | 35.644 | 202 | 108 | 8 | 3 | 194 | 215 | 404 | 1.49e-17 | 80.9 |
MS.gene49017.t1 | MTR_3g026920 | 30.256 | 195 | 92 | 7 | 7 | 182 | 163 | 332 | 2.48e-17 | 79.7 |
MS.gene49017.t1 | MTR_3g087260 | 36.158 | 177 | 97 | 6 | 5 | 175 | 198 | 364 | 2.97e-17 | 79.7 |
MS.gene49017.t1 | MTR_1089s0010 | 34.483 | 174 | 104 | 6 | 11 | 182 | 130 | 295 | 4.14e-17 | 79.0 |
MS.gene49017.t1 | MTR_5g045510 | 34.416 | 154 | 93 | 4 | 7 | 155 | 128 | 278 | 4.84e-17 | 78.6 |
MS.gene49017.t1 | MTR_7g034115 | 35.912 | 181 | 100 | 7 | 7 | 181 | 128 | 298 | 6.56e-17 | 78.2 |
MS.gene49017.t1 | MTR_7g056287 | 36.025 | 161 | 93 | 5 | 12 | 172 | 129 | 279 | 6.84e-17 | 78.2 |
MS.gene49017.t1 | MTR_1g108820 | 34.123 | 211 | 111 | 13 | 5 | 192 | 120 | 325 | 9.01e-17 | 77.8 |
MS.gene49017.t1 | MTR_7g055943 | 35.870 | 184 | 99 | 8 | 8 | 182 | 160 | 333 | 9.45e-17 | 78.2 |
MS.gene49017.t1 | MTR_7g056277 | 36.478 | 159 | 91 | 5 | 12 | 170 | 385 | 533 | 1.28e-16 | 78.2 |
MS.gene49017.t1 | MTR_5g063950 | 33.333 | 171 | 95 | 4 | 10 | 172 | 106 | 265 | 1.60e-16 | 77.0 |
MS.gene49017.t1 | MTR_1g108820 | 36.022 | 186 | 100 | 10 | 5 | 176 | 120 | 300 | 2.85e-16 | 76.3 |
MS.gene49017.t1 | MTR_7g056447 | 55.882 | 68 | 30 | 0 | 1 | 68 | 118 | 185 | 3.23e-16 | 75.5 |
MS.gene49017.t1 | MTR_5g039470 | 34.444 | 180 | 99 | 5 | 6 | 172 | 99 | 272 | 3.38e-16 | 75.9 |
MS.gene49017.t1 | MTR_5g008920 | 36.364 | 176 | 98 | 8 | 1 | 172 | 123 | 288 | 3.40e-16 | 76.3 |
MS.gene49017.t1 | MTR_2g036470 | 35.088 | 171 | 99 | 6 | 11 | 174 | 138 | 303 | 3.71e-16 | 76.3 |
MS.gene49017.t1 | MTR_2g007400 | 35.465 | 172 | 98 | 6 | 7 | 174 | 143 | 305 | 3.88e-16 | 76.3 |
MS.gene49017.t1 | MTR_3g105060 | 35.088 | 171 | 95 | 5 | 6 | 173 | 131 | 288 | 4.82e-16 | 75.9 |
MS.gene49017.t1 | MTR_7g075820 | 33.880 | 183 | 103 | 7 | 7 | 182 | 141 | 312 | 9.43e-16 | 75.1 |
MS.gene49017.t1 | MTR_5g073340 | 34.737 | 190 | 105 | 6 | 3 | 180 | 97 | 279 | 1.04e-15 | 74.3 |
MS.gene49017.t1 | MTR_4g039440 | 31.176 | 170 | 111 | 3 | 8 | 172 | 149 | 317 | 1.15e-15 | 75.1 |
MS.gene49017.t1 | MTR_1g108800 | 35.503 | 169 | 82 | 6 | 10 | 165 | 92 | 246 | 1.22e-15 | 74.3 |
MS.gene49017.t1 | MTR_7g075800 | 29.787 | 188 | 103 | 7 | 7 | 174 | 140 | 318 | 1.68e-15 | 74.7 |
MS.gene49017.t1 | MTR_1g107385 | 35.632 | 174 | 100 | 6 | 7 | 176 | 165 | 330 | 1.94e-15 | 74.3 |
MS.gene49017.t1 | MTR_3g467400 | 35.256 | 156 | 81 | 6 | 5 | 150 | 131 | 276 | 2.70e-15 | 73.6 |
MS.gene49017.t1 | MTR_6g013160 | 30.653 | 199 | 103 | 8 | 6 | 174 | 159 | 352 | 2.74e-15 | 73.9 |
MS.gene49017.t1 | MTR_3g082890 | 31.606 | 193 | 109 | 6 | 6 | 179 | 210 | 398 | 2.88e-15 | 73.9 |
MS.gene49017.t1 | MTR_7g060470 | 29.947 | 187 | 111 | 6 | 9 | 180 | 126 | 307 | 3.61e-15 | 73.6 |
MS.gene49017.t1 | MTR_5g031970 | 32.941 | 170 | 92 | 5 | 3 | 172 | 117 | 264 | 7.52e-15 | 72.4 |
MS.gene49017.t1 | MTR_3g109982 | 34.579 | 214 | 106 | 10 | 3 | 194 | 215 | 416 | 8.63e-15 | 72.8 |
MS.gene49017.t1 | MTR_3g082890 | 32.447 | 188 | 104 | 6 | 6 | 174 | 130 | 313 | 8.98e-15 | 72.4 |
MS.gene49017.t1 | MTR_3g107120 | 32.432 | 185 | 100 | 6 | 3 | 177 | 137 | 306 | 1.88e-14 | 71.2 |
MS.gene49017.t1 | MTR_2g008320 | 32.759 | 174 | 105 | 5 | 7 | 175 | 172 | 338 | 2.06e-14 | 71.2 |
MS.gene49017.t1 | MTR_7g056020 | 34.444 | 180 | 97 | 8 | 12 | 182 | 124 | 291 | 5.68e-14 | 70.5 |
MS.gene49017.t1 | MTR_6g022360 | 32.828 | 198 | 108 | 8 | 12 | 194 | 154 | 341 | 1.42e-13 | 68.9 |
MS.gene49017.t1 | MTR_3g108150 | 34.595 | 185 | 89 | 8 | 6 | 174 | 126 | 294 | 2.23e-13 | 68.2 |
MS.gene49017.t1 | MTR_5g058100 | 31.977 | 172 | 101 | 6 | 11 | 174 | 131 | 294 | 2.24e-13 | 68.2 |
MS.gene49017.t1 | MTR_3g107160 | 30.899 | 178 | 108 | 6 | 7 | 179 | 133 | 300 | 6.42e-13 | 67.0 |
MS.gene49017.t1 | MTR_5g076150 | 33.333 | 198 | 104 | 9 | 8 | 182 | 22 | 214 | 1.87e-12 | 64.3 |
MS.gene49017.t1 | MTR_7g007370 | 31.977 | 172 | 100 | 6 | 7 | 174 | 93 | 251 | 5.03e-12 | 64.3 |
MS.gene49017.t1 | MTR_2g008310 | 31.792 | 173 | 108 | 4 | 7 | 175 | 118 | 284 | 5.66e-12 | 64.3 |
MS.gene49017.t1 | MTR_2g005990 | 33.136 | 169 | 102 | 4 | 8 | 174 | 138 | 297 | 7.49e-11 | 60.8 |
MS.gene49017.t1 | MTR_4g098590 | 33.520 | 179 | 91 | 8 | 7 | 172 | 126 | 289 | 7.85e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 36 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCACTCCTCACATCGTTTA+TGG | 0.116082 | 7.3:-48426752 | None:intergenic |
TTGATTAGAGCAAACATTTA+TGG | 0.157173 | 7.3:+48426514 | MS.gene49017:CDS |
TTCTGATTACTTTGCTTTGC+AGG | 0.228463 | 7.3:+48426560 | MS.gene49017:CDS |
GTACCAAATGATAACGAAAA+TGG | 0.328758 | 7.3:+48427129 | MS.gene49017:CDS |
TTATTAGCAATTCCTCTAGA+AGG | 0.338129 | 7.3:-48426423 | None:intergenic |
TTTCAAAGGTCTTGGACATT+TGG | 0.341353 | 7.3:+48426378 | MS.gene49017:CDS |
TGTGAATGATCTTTCTCAAT+TGG | 0.364044 | 7.3:+48426309 | MS.gene49017:CDS |
TTCATGTGTTTCAAAGGTCT+TGG | 0.380310 | 7.3:+48426370 | MS.gene49017:CDS |
GTACTTGACACTTATGCATA+TGG | 0.383404 | 7.3:-48427110 | None:intergenic |
ATGTTTGCTCTAATCAAATT+CGG | 0.410126 | 7.3:-48426508 | None:intergenic |
CTCGTAGTTCTTAATTTGAA+AGG | 0.413547 | 7.3:+48426280 | MS.gene49017:CDS |
CATTTGGTAAAGCTTCTATC+AGG | 0.415072 | 7.3:+48426394 | MS.gene49017:CDS |
AAAGATTCTGTGTGTCGAAC+TGG | 0.431230 | 7.3:+48426585 | MS.gene49017:CDS |
TAATCAGAACATTGACATTA+CGG | 0.443744 | 7.3:-48426546 | None:intergenic |
TCGTAGTTCTTAATTTGAAA+GGG | 0.476167 | 7.3:+48426281 | MS.gene49017:CDS |
CGCTAAAACAAGTGACTCGT+TGG | 0.491747 | 7.3:-48426467 | None:intergenic |
TATTAGCAATTCCTCTAGAA+GGG | 0.495133 | 7.3:-48426422 | None:intergenic |
CTATGGTTCATGTGTTTCAA+AGG | 0.504697 | 7.3:+48426364 | MS.gene49017:CDS |
CGAAAATGGCCTCGTCAACA+AGG | 0.510374 | 7.3:+48427143 | MS.gene49017:CDS |
TCTGATTACTTTGCTTTGCA+GGG | 0.530293 | 7.3:+48426561 | MS.gene49017:CDS |
GACACTTATGCATATGGAAG+AGG | 0.544193 | 7.3:-48427104 | None:intergenic |
GCTAATAAGATCGATGTATG+TGG | 0.567808 | 7.3:+48426438 | MS.gene49017:CDS |
TGCTGAGGCCCTTGTTGACG+AGG | 0.570275 | 7.3:-48427152 | None:intergenic |
GATTCTGTGAATCAAGATGA+AGG | 0.581025 | 7.3:+48426920 | MS.gene49017:CDS |
AACGATGTGAGGAGTGGCAG+TGG | 0.591226 | 7.3:+48426757 | MS.gene49017:CDS |
TCAAAAGCTTACCATTCATG+AGG | 0.595474 | 7.3:+48426812 | MS.gene49017:CDS |
ATTAGCAATTCCTCTAGAAG+GGG | 0.600999 | 7.3:-48426421 | None:intergenic |
TTTCAAATTAAGAACTACGA+GGG | 0.603370 | 7.3:-48426278 | None:intergenic |
ATCAGGATGTCCCCTTCTAG+AGG | 0.610125 | 7.3:+48426411 | MS.gene49017:CDS |
TAAGAGTTTACATGTTGCTG+AGG | 0.615278 | 7.3:-48427167 | None:intergenic |
ACCATAAACGATGTGAGGAG+TGG | 0.616401 | 7.3:+48426751 | MS.gene49017:CDS |
GAAAATGGCCTCGTCAACAA+GGG | 0.637203 | 7.3:+48427144 | MS.gene49017:CDS |
GTTTCAAAATCTAATCCACA+TGG | 0.642529 | 7.3:+48426716 | MS.gene49017:CDS |
CTTTCAAATTAAGAACTACG+AGG | 0.666866 | 7.3:-48426279 | None:intergenic |
TTACAACTGAAAATACTAGG+AGG | 0.668702 | 7.3:-48426253 | None:intergenic |
ACGATGTGAGGAGTGGCAGT+GGG | 0.695388 | 7.3:+48426758 | MS.gene49017:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCGTAAATAAAATAAAA+AGG | - | chr7.3:48426883-48426902 | None:intergenic | 10.0% |
!! | TTTCGTAAATAAAATAAAAA+GGG | - | chr7.3:48426882-48426901 | None:intergenic | 10.0% |
!! | ATATAGGTTTAAAAGAAATT+AGG | + | chr7.3:48426631-48426650 | MS.gene49017:intron | 15.0% |
!! | TATAGGTTTAAAAGAAATTA+GGG | + | chr7.3:48426632-48426651 | MS.gene49017:intron | 15.0% |
!!! | AATTTCTTTTAAACCTATAT+TGG | - | chr7.3:48426631-48426650 | None:intergenic | 15.0% |
! | ATGTTTGCTCTAATCAAATT+CGG | - | chr7.3:48426511-48426530 | None:intergenic | 25.0% |
! | ATTATATGACTCTCCAATAT+AGG | + | chr7.3:48426615-48426634 | MS.gene49017:intron | 25.0% |
! | GAAATATTTGAATTGTTGAC+AGG | + | chr7.3:48426898-48426917 | MS.gene49017:intron | 25.0% |
! | TAAAAACAAAACCTCATGAA+TGG | - | chr7.3:48426826-48426845 | None:intergenic | 25.0% |
! | TAATCAGAACATTGACATTA+CGG | - | chr7.3:48426549-48426568 | None:intergenic | 25.0% |
! | TTGATTAGAGCAAACATTTA+TGG | + | chr7.3:48426514-48426533 | MS.gene49017:CDS | 25.0% |
! | TTTCAAATTAAGAACTACGA+GGG | - | chr7.3:48426281-48426300 | None:intergenic | 25.0% |
!! | GTTTTACAACTGAAAATACT+AGG | - | chr7.3:48426259-48426278 | None:intergenic | 25.0% |
!! | TCGTAGTTCTTAATTTGAAA+GGG | + | chr7.3:48426281-48426300 | MS.gene49017:CDS | 25.0% |
!!! | ATATTTTGAGTTGTGTTGAA+AGG | - | chr7.3:48426985-48427004 | None:intergenic | 25.0% |
!!! | GGATTAGATTTTGAAACATA+GGG | - | chr7.3:48426713-48426732 | None:intergenic | 25.0% |
!!! | TGGATTAGATTTTGAAACAT+AGG | - | chr7.3:48426714-48426733 | None:intergenic | 25.0% |
AAAAGGGTTAAAAACTGTTG+AGG | - | chr7.3:48426866-48426885 | None:intergenic | 30.0% | |
CTCAAAATATGCTTGCTTAA+AGG | + | chr7.3:48426995-48427014 | MS.gene49017:intron | 30.0% | |
CTTTCAAATTAAGAACTACG+AGG | - | chr7.3:48426282-48426301 | None:intergenic | 30.0% | |
GGTTAAAAATAAGTTCCATG+TGG | - | chr7.3:48426734-48426753 | None:intergenic | 30.0% | |
GTTTCAAAATCTAATCCACA+TGG | + | chr7.3:48426716-48426735 | MS.gene49017:CDS | 30.0% | |
TCCTAAAAACTCTTCATCTA+TGG | + | chr7.3:48426347-48426366 | MS.gene49017:CDS | 30.0% | |
TGTGAATGATCTTTCTCAAT+TGG | + | chr7.3:48426309-48426328 | MS.gene49017:CDS | 30.0% | |
TTACAACTGAAAATACTAGG+AGG | - | chr7.3:48426256-48426275 | None:intergenic | 30.0% | |
TTATTAGCAATTCCTCTAGA+AGG | - | chr7.3:48426426-48426445 | None:intergenic | 30.0% | |
! | ACCATAGATGAAGAGTTTTT+AGG | - | chr7.3:48426351-48426370 | None:intergenic | 30.0% |
! | CTCGTAGTTCTTAATTTGAA+AGG | + | chr7.3:48426280-48426299 | MS.gene49017:CDS | 30.0% |
! | GTACCAAATGATAACGAAAA+TGG | + | chr7.3:48427129-48427148 | MS.gene49017:CDS | 30.0% |
! | TAACTTTTGTATATCACTGC+AGG | + | chr7.3:48426668-48426687 | MS.gene49017:intron | 30.0% |
! | TATTAGCAATTCCTCTAGAA+GGG | - | chr7.3:48426425-48426444 | None:intergenic | 30.0% |
! | TTTTAACCATAAACGATGTG+AGG | + | chr7.3:48426746-48426765 | MS.gene49017:CDS | 30.0% |
!!! | AATGGTAAGCTTTTGAAGTT+TGG | - | chr7.3:48426808-48426827 | None:intergenic | 30.0% |
!!! | ATGGTAAGCTTTTGAAGTTT+GGG | - | chr7.3:48426807-48426826 | None:intergenic | 30.0% |
!!! | GATTTTGAAACATAGGGAAA+TGG | - | chr7.3:48426707-48426726 | None:intergenic | 30.0% |
CATTTGGTAAAGCTTCTATC+AGG | + | chr7.3:48426394-48426413 | MS.gene49017:CDS | 35.0% | |
CTATGGTTCATGTGTTTCAA+AGG | + | chr7.3:48426364-48426383 | MS.gene49017:CDS | 35.0% | |
GATTCTGTGAATCAAGATGA+AGG | + | chr7.3:48426920-48426939 | MS.gene49017:CDS | 35.0% | |
GCTAATAAGATCGATGTATG+TGG | + | chr7.3:48426438-48426457 | MS.gene49017:CDS | 35.0% | |
GTACTTGACACTTATGCATA+TGG | - | chr7.3:48427113-48427132 | None:intergenic | 35.0% | |
TCAAAAGCTTACCATTCATG+AGG | + | chr7.3:48426812-48426831 | MS.gene49017:CDS | 35.0% | |
TCTGATTACTTTGCTTTGCA+GGG | + | chr7.3:48426561-48426580 | MS.gene49017:CDS | 35.0% | |
TTCATGTGTTTCAAAGGTCT+TGG | + | chr7.3:48426370-48426389 | MS.gene49017:CDS | 35.0% | |
TTCTGATTACTTTGCTTTGC+AGG | + | chr7.3:48426560-48426579 | MS.gene49017:CDS | 35.0% | |
TTTCAAAGGTCTTGGACATT+TGG | + | chr7.3:48426378-48426397 | MS.gene49017:CDS | 35.0% | |
! | AAGATGAAGGTGTGTGTAAT+TGG | + | chr7.3:48426933-48426952 | MS.gene49017:intron | 35.0% |
! | ATTAGCAATTCCTCTAGAAG+GGG | - | chr7.3:48426424-48426443 | None:intergenic | 35.0% |
!! | AGAGGCACTCTTAATTGATA+TGG | - | chr7.3:48427089-48427108 | None:intergenic | 35.0% |
!! | AGATGAAGAGTTTTTAGGAG+AGG | - | chr7.3:48426346-48426365 | None:intergenic | 35.0% |
!! | AGGCCATTTTCGTTATCATT+TGG | - | chr7.3:48427135-48427154 | None:intergenic | 35.0% |
!! | GATGAAGAGTTTTTAGGAGA+GGG | - | chr7.3:48426345-48426364 | None:intergenic | 35.0% |
AAAGATTCTGTGTGTCGAAC+TGG | + | chr7.3:48426585-48426604 | MS.gene49017:CDS | 40.0% | |
AGGCATTCAGGAACAATTGT+TGG | - | chr7.3:48426965-48426984 | None:intergenic | 40.0% | |
GACACTTATGCATATGGAAG+AGG | - | chr7.3:48427107-48427126 | None:intergenic | 40.0% | |
! | CTTTTGTATATCACTGCAGG+AGG | + | chr7.3:48426671-48426690 | MS.gene49017:intron | 40.0% |
! | TGAAGGTGTGTGTAATTGGA+TGG | + | chr7.3:48426937-48426956 | MS.gene49017:intron | 40.0% |
!! | AGTTGTGTTGAAAGGCATTC+AGG | - | chr7.3:48426977-48426996 | None:intergenic | 40.0% |
!!! | CAACGAGTCACTTGTTTTAG+CGG | + | chr7.3:48426468-48426487 | MS.gene49017:CDS | 40.0% |
ACCATAAACGATGTGAGGAG+TGG | + | chr7.3:48426751-48426770 | MS.gene49017:CDS | 45.0% | |
CGCTAAAACAAGTGACTCGT+TGG | - | chr7.3:48426470-48426489 | None:intergenic | 45.0% | |
GAAAATGGCCTCGTCAACAA+GGG | + | chr7.3:48427144-48427163 | MS.gene49017:CDS | 45.0% | |
ATCAGGATGTCCCCTTCTAG+AGG | + | chr7.3:48426411-48426430 | MS.gene49017:CDS | 50.0% | |
CGAAAATGGCCTCGTCAACA+AGG | + | chr7.3:48427143-48427162 | MS.gene49017:CDS | 50.0% | |
GCCACTCCTCACATCGTTTA+TGG | - | chr7.3:48426755-48426774 | None:intergenic | 50.0% | |
AACGATGTGAGGAGTGGCAG+TGG | + | chr7.3:48426757-48426776 | MS.gene49017:CDS | 55.0% | |
ACGATGTGAGGAGTGGCAGT+GGG | + | chr7.3:48426758-48426777 | MS.gene49017:CDS | 55.0% | |
TGCTGAGGCCCTTGTTGACG+AGG | - | chr7.3:48427155-48427174 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 48426229 | 48427182 | 48426229 | ID=MS.gene49017 |
chr7.3 | mRNA | 48426229 | 48427182 | 48426229 | ID=MS.gene49017.t1;Parent=MS.gene49017 |
chr7.3 | exon | 48426229 | 48426606 | 48426229 | ID=MS.gene49017.t1.exon1;Parent=MS.gene49017.t1 |
chr7.3 | CDS | 48426229 | 48426606 | 48426229 | ID=cds.MS.gene49017.t1;Parent=MS.gene49017.t1 |
chr7.3 | exon | 48426690 | 48426833 | 48426690 | ID=MS.gene49017.t1.exon2;Parent=MS.gene49017.t1 |
chr7.3 | CDS | 48426690 | 48426833 | 48426690 | ID=cds.MS.gene49017.t1;Parent=MS.gene49017.t1 |
chr7.3 | exon | 48426920 | 48426941 | 48426920 | ID=MS.gene49017.t1.exon3;Parent=MS.gene49017.t1 |
chr7.3 | CDS | 48426920 | 48426941 | 48426920 | ID=cds.MS.gene49017.t1;Parent=MS.gene49017.t1 |
chr7.3 | exon | 48427100 | 48427182 | 48427100 | ID=MS.gene49017.t1.exon4;Parent=MS.gene49017.t1 |
chr7.3 | CDS | 48427100 | 48427182 | 48427100 | ID=cds.MS.gene49017.t1;Parent=MS.gene49017.t1 |
Gene Sequence |
Protein sequence |