AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022905

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022905.t1 MTR_7g056433 83.251 203 34 0 86 288 187 389 7.20e-121 351
MS.gene022905.t1 MTR_7g115270 46.154 234 117 3 59 285 168 399 1.70e-56 187
MS.gene022905.t1 MTR_5g013500 46.083 217 103 6 85 288 150 365 2.27e-49 167
MS.gene022905.t1 MTR_7g033915 43.564 202 108 4 86 287 169 364 1.59e-45 157
MS.gene022905.t1 MTR_7g056420 45.679 243 121 5 51 282 117 359 3.57e-45 163
MS.gene022905.t1 MTR_7g056430 45.679 243 121 5 51 282 117 359 4.47e-45 163
MS.gene022905.t1 MTR_7g098570 42.157 204 107 5 85 283 191 388 1.36e-42 152
MS.gene022905.t1 MTR_7g098510 41.232 211 109 6 85 288 189 391 2.70e-42 149
MS.gene022905.t1 MTR_5g008950 39.331 239 128 8 57 288 137 365 1.07e-41 147
MS.gene022905.t1 MTR_1g041245 43.396 212 102 7 86 288 184 386 1.19e-40 145
MS.gene022905.t1 MTR_7g034115 43.719 199 101 6 86 280 184 375 1.88e-39 142
MS.gene022905.t1 MTR_7g033990 42.564 195 106 5 86 280 187 375 3.19e-39 142
MS.gene022905.t1 MTR_7g032380 48.684 152 70 4 144 288 206 356 4.25e-38 137
MS.gene022905.t1 MTR_7g098480 38.647 207 116 6 85 287 189 388 3.78e-37 137
MS.gene022905.t1 MTR_7g034120 41.176 204 109 6 85 288 116 308 5.15e-37 134
MS.gene022905.t1 MTR_3g087260 40.976 205 113 4 87 287 256 456 7.03e-37 136
MS.gene022905.t1 MTR_3g036250 42.157 204 94 6 86 285 180 363 7.04e-37 134
MS.gene022905.t1 MTR_0543s0010 40.191 209 108 6 86 287 251 449 3.09e-36 134
MS.gene022905.t1 MTR_3g115430 52.308 130 52 5 164 288 1 125 8.41e-36 125
MS.gene022905.t1 MTR_3g108560 38.679 212 112 5 86 287 185 388 3.96e-35 130
MS.gene022905.t1 MTR_7g032370 48.175 137 66 3 156 288 217 352 8.02e-35 129
MS.gene022905.t1 MTR_2g020180 37.745 204 109 6 89 288 26 215 1.67e-34 124
MS.gene022905.t1 MTR_5g008920 37.719 228 132 7 65 288 160 381 4.19e-34 127
MS.gene022905.t1 MTR_0492s0020 39.487 195 101 6 86 273 251 435 1.57e-32 124
MS.gene022905.t1 MTR_3g082890 39.267 191 106 4 103 288 299 484 2.13e-32 124
MS.gene022905.t1 MTR_7g081290 47.101 138 63 4 156 288 124 256 6.60e-32 119
MS.gene022905.t1 MTR_7g088260 34.894 235 133 7 64 288 238 462 2.26e-31 121
MS.gene022905.t1 MTR_3g109982 38.974 195 109 5 86 275 273 462 1.97e-30 120
MS.gene022905.t1 MTR_7g056277 37.313 201 118 5 87 287 435 627 1.08e-27 112
MS.gene022905.t1 MTR_3g023630 34.498 229 126 9 65 288 164 373 7.90e-27 108
MS.gene022905.t1 MTR_3g082890 32.895 228 106 5 103 288 219 441 1.40e-26 108
MS.gene022905.t1 MTR_3g040700 35.294 204 106 6 86 281 218 403 1.68e-26 108
MS.gene022905.t1 MTR_2g007450 33.208 265 140 12 47 288 171 421 1.75e-26 107
MS.gene022905.t1 MTR_7g007080 35.096 208 114 7 86 285 182 376 1.12e-25 105
MS.gene022905.t1 MTR_3g467400 35.610 205 102 5 86 288 191 367 1.57e-25 104
MS.gene022905.t1 MTR_7g056287 34.158 202 125 4 86 287 178 371 1.54e-24 101
MS.gene022905.t1 MTR_5g012840 30.357 280 169 8 11 288 63 318 2.53e-24 100
MS.gene022905.t1 MTR_4g080610 35.556 180 103 4 116 287 182 356 1.02e-23 99.4
MS.gene022905.t1 MTR_3g108150 33.865 251 143 9 52 287 144 386 1.11e-23 99.8
MS.gene022905.t1 MTR_7g114710 36.620 213 93 10 85 288 185 364 2.91e-23 98.2
MS.gene022905.t1 MTR_7g056020 34.158 202 120 3 86 281 173 367 5.12e-23 99.0
MS.gene022905.t1 MTR_4g039440 33.180 217 124 6 86 288 203 412 9.20e-23 97.4
MS.gene022905.t1 MTR_7g083740 34.272 213 115 9 86 287 168 366 1.49e-22 96.3
MS.gene022905.t1 MTR_8g085430 50.485 103 44 3 178 274 213 314 2.50e-22 95.1
MS.gene022905.t1 MTR_1g085120 32.627 236 141 8 64 288 243 471 2.54e-21 93.6
MS.gene022905.t1 MTR_3g107100 33.641 217 121 8 86 285 185 395 2.92e-21 93.2
MS.gene022905.t1 MTR_1g107385 34.742 213 111 9 86 285 223 420 3.24e-21 93.2
MS.gene022905.t1 MTR_1g085120 32.627 236 141 8 64 288 318 546 3.79e-21 93.6
MS.gene022905.t1 MTR_2g007360 31.439 264 143 12 46 285 122 371 5.86e-21 91.7
MS.gene022905.t1 MTR_5g007410 30.769 208 136 5 86 286 200 406 9.00e-21 92.0
MS.gene022905.t1 MTR_1g043170 51.220 82 37 1 207 288 10 88 9.18e-21 84.7
MS.gene022905.t1 MTR_7g026500 30.435 230 139 8 65 287 179 394 1.25e-20 91.3
MS.gene022905.t1 MTR_5g073420 33.816 207 117 8 86 287 188 379 1.91e-20 90.5
MS.gene022905.t1 MTR_2g008320 31.356 236 138 9 64 288 205 427 2.02e-20 90.9
MS.gene022905.t1 MTR_3g095630 33.735 166 99 5 116 278 18 175 7.58e-20 85.5
MS.gene022905.t1 MTR_1g053025 25.833 240 148 8 64 286 161 387 1.23e-19 88.2
MS.gene022905.t1 MTR_2g005990 33.198 247 127 11 59 285 164 392 1.75e-19 87.8
MS.gene022905.t1 MTR_3g105060 33.333 207 115 7 86 288 186 373 2.01e-19 87.4
MS.gene022905.t1 MTR_3g026920 32.287 223 115 8 85 288 200 405 4.87e-19 86.7
MS.gene022905.t1 MTR_3g107940 40.157 127 64 3 157 280 88 205 5.58e-19 85.9
MS.gene022905.t1 MTR_5g045170 31.455 213 121 7 86 285 188 388 5.60e-19 86.3
MS.gene022905.t1 MTR_6g022500 30.476 210 125 7 86 285 275 473 5.74e-19 87.0
MS.gene022905.t1 MTR_1g066830 27.273 286 159 11 43 287 109 386 8.81e-19 85.9
MS.gene022905.t1 MTR_2g008310 32.340 235 135 10 64 288 151 371 1.12e-18 85.5
MS.gene022905.t1 MTR_5g054920 31.746 189 103 6 86 260 9 185 1.15e-18 82.4
MS.gene022905.t1 MTR_7g034110 42.157 102 56 2 155 256 213 311 2.80e-18 84.0
MS.gene022905.t1 MTR_3g108140 47.436 78 41 0 210 287 70 147 3.67e-18 80.5
MS.gene022905.t1 MTR_7g055943 32.558 215 126 5 86 288 214 421 9.49e-18 83.2
MS.gene022905.t1 MTR_6g045333 30.476 210 136 5 86 287 238 445 1.04e-17 83.2
MS.gene022905.t1 MTR_2g007400 32.407 216 115 10 86 285 200 400 1.18e-17 82.8
MS.gene022905.t1 MTR_6g022520 30.952 210 129 6 88 287 109 312 1.52e-17 81.6
MS.gene022905.t1 MTR_6g029350 33.971 209 109 11 87 285 6 195 3.49e-17 79.3
MS.gene022905.t1 MTR_6g022360 28.230 209 138 4 86 287 204 407 3.93e-17 81.3
MS.gene022905.t1 MTR_3g107120 32.386 176 107 6 86 255 195 364 5.83e-17 80.5
MS.gene022905.t1 MTR_6g040270 35.821 134 79 3 155 285 249 378 8.37e-17 80.1
MS.gene022905.t1 MTR_7g022060 41.935 93 53 1 196 288 238 329 8.40e-17 79.7
MS.gene022905.t1 MTR_5g073370 33.333 174 105 6 86 255 181 347 1.03e-16 79.7
MS.gene022905.t1 MTR_2g007090 38.235 136 69 6 155 287 170 293 1.62e-16 78.2
MS.gene022905.t1 MTR_5g058100 30.660 212 127 8 86 287 182 383 1.75e-16 79.3
MS.gene022905.t1 MTR_2g007550 31.746 189 96 6 116 286 160 333 1.92e-16 78.6
MS.gene022905.t1 MTR_7g075820 32.195 205 120 7 86 285 201 391 2.02e-16 79.0
MS.gene022905.t1 MTR_5g083890 30.645 186 107 6 86 257 199 376 3.42e-16 79.0
MS.gene022905.t1 MTR_7g021930 41.935 93 53 1 196 288 238 329 1.57e-15 75.9
MS.gene022905.t1 MTR_7g021970 41.935 93 53 1 196 288 238 329 1.57e-15 75.9
MS.gene022905.t1 MTR_6g011460 30.516 213 127 7 86 288 220 421 2.28e-15 76.3
MS.gene022905.t1 MTR_5g008910 50.649 77 34 2 212 288 230 302 4.69e-15 74.3
MS.gene022905.t1 MTR_1g108820 29.864 221 120 10 86 285 177 383 4.77e-15 75.1
MS.gene022905.t1 MTR_1089s0010 29.327 208 133 6 86 288 181 379 5.03e-15 74.7
MS.gene022905.t1 MTR_5g039450 29.245 212 127 6 85 286 158 356 5.16e-15 74.7
MS.gene022905.t1 MTR_0009s0080 31.461 178 111 5 86 255 193 367 5.18e-15 75.1
MS.gene022905.t1 MTR_3g107160 28.774 212 127 8 86 288 187 383 1.22e-14 73.9
MS.gene022905.t1 MTR_7g034090 35.000 160 78 7 140 287 166 311 1.30e-14 73.9
MS.gene022905.t1 MTR_5g031970 28.856 201 118 5 86 285 177 353 1.48e-14 73.2
MS.gene022905.t1 MTR_3g071850 27.053 207 141 5 86 284 201 405 1.60e-14 73.9
MS.gene022905.t1 MTR_4g096730 46.835 79 37 2 211 288 15 89 2.57e-14 67.8
MS.gene022905.t1 MTR_3g099830 33.178 214 111 9 87 285 175 371 3.11e-14 72.4
MS.gene022905.t1 MTR_5g058000 30.837 227 145 7 64 287 157 374 4.21e-14 72.0
MS.gene022905.t1 MTR_8g062010 32.836 134 87 2 155 288 300 430 4.54e-14 72.4
MS.gene022905.t1 MTR_8g077460 31.111 135 87 3 154 288 247 375 5.70e-14 71.6
MS.gene022905.t1 MTR_2g036470 30.568 229 148 7 65 285 168 393 7.46e-14 71.6
MS.gene022905.t1 MTR_1g108800 31.280 211 120 6 86 285 143 339 9.44e-14 70.9
MS.gene022905.t1 MTR_5g024060 30.625 160 106 3 121 280 46 200 1.15e-13 69.7
MS.gene022905.t1 MTR_3g094980 40.476 84 46 1 176 255 34 117 1.24e-13 68.2
MS.gene022905.t1 MTR_8g062300 32.836 134 87 2 155 288 347 477 1.54e-13 70.9
MS.gene022905.t1 MTR_8g014260 33.577 137 80 4 155 288 323 451 2.86e-13 70.1
MS.gene022905.t1 MTR_3g113785 40.217 92 45 2 164 245 1 92 2.99e-13 65.1
MS.gene022905.t1 MTR_5g063950 26.423 246 137 6 65 287 137 361 5.70e-13 68.6
MS.gene022905.t1 MTR_7g056280 30.556 144 87 4 152 287 438 576 1.40e-12 68.2
MS.gene022905.t1 MTR_1377s0010 38.614 101 57 3 156 255 31 127 2.14e-12 63.5
MS.gene022905.t1 MTR_5g033200 31.515 165 100 6 116 275 13 169 2.36e-12 64.7
MS.gene022905.t1 MTR_8g014210 35.156 128 77 4 161 288 110 231 4.07e-12 65.1
MS.gene022905.t1 MTR_8g070950 29.114 158 109 2 131 288 280 434 5.85e-12 65.9
MS.gene022905.t1 MTR_3g071790 28.333 180 99 7 88 249 35 202 1.00e-11 63.2
MS.gene022905.t1 MTR_2g007530 34.307 137 65 3 152 288 226 337 1.41e-11 64.3
MS.gene022905.t1 MTR_8g058970 32.727 110 70 2 182 288 369 477 1.53e-11 64.7
MS.gene022905.t1 MTR_3g106960 34.400 125 72 5 138 255 50 171 1.83e-11 63.2
MS.gene022905.t1 MTR_7g007340 31.897 232 124 13 64 282 141 351 3.25e-11 63.5
MS.gene022905.t1 MTR_8g469020 30.435 138 87 2 154 288 320 451 6.94e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGAACGTGCATGCTTAA+AGG 0.211918 7.2:+46794150 MS.gene022905:CDS
GCATTTCAGACTTGTCTTCT+TGG 0.223215 7.2:+46793693 MS.gene022905:CDS
CTTGTCGTTCTTCAGTTGTA+TGG 0.288078 7.2:+46793443 MS.gene022905:CDS
AGTTGTGTTGAAAGGCATTC+TGG 0.305953 7.2:-46794129 None:intergenic
CAACCAGTCACCTGCTTTAC+CGG 0.317716 7.2:+46793634 MS.gene022905:CDS
TCCACTTCCCACGGCAGTTA+AGG 0.349812 7.2:-46793902 None:intergenic
GGAGGACACAAATCTGAAAA+AGG 0.352264 7.2:-46793216 None:intergenic
AAGCTAATTTCGTTATCATT+TGG 0.362113 7.2:-46794287 None:intergenic
TAATTGCAATTGCTCTAGAA+TGG 0.387207 7.2:-46793588 None:intergenic
ACTGCCGTGGGAAGTGGAAT+TGG 0.388156 7.2:+46793907 MS.gene022905:CDS
TGAAGTTGTGGATAATTTGA+TGG 0.399266 7.2:+46794092 MS.gene022905:CDS
ACCTTAACTGCCGTGGGAAG+TGG 0.414043 7.2:+46793901 MS.gene022905:CDS
TTTCGTTATCATTTGGTGCT+TGG 0.417778 7.2:-46794280 None:intergenic
ATGCTTGCTCTAATCAAATT+CGG 0.421701 7.2:-46793674 None:intergenic
GATTGACATCGTGTAAGTTA+TGG 0.423638 7.2:-46793307 None:intergenic
TCAAAATCTTACCATTCGTC+AGG 0.427789 7.2:+46793962 MS.gene022905:CDS
TAGAGCAATTGCAATTAGAA+TGG 0.432544 7.2:+46793594 MS.gene022905:CDS
CGTGGACAGGATATTGAGAT+TGG 0.435504 7.2:+46794066 MS.gene022905:intron
CGAAATTAGCTTCGTCGACA+AGG 0.451535 7.2:+46794298 MS.gene022905:CDS
TTTCTTTGCTTTGCCGGACA+AGG 0.461973 7.2:+46793729 MS.gene022905:CDS
AATTGCAATTGCTCTAGAAT+GGG 0.469494 7.2:-46793587 None:intergenic
GCAATTAGAATGGATATTTG+TGG 0.472895 7.2:+46793604 MS.gene022905:CDS
TTGTCGTTCTTCAGTTGTAT+GGG 0.483623 7.2:+46793444 MS.gene022905:CDS
TTTCCGGTAAAGCAGGTGAC+TGG 0.500075 7.2:-46793637 None:intergenic
AAGGATTCTGTATGTAGAGC+TGG 0.500198 7.2:+46793748 MS.gene022905:CDS
CTGCCGTGGGAAGTGGAATT+GGG 0.501693 7.2:+46793908 MS.gene022905:CDS
TGCCGGATATTTCGAGATTG+AGG 0.504613 7.2:-46793370 None:intergenic
CTACATACAGAATCCTTGTC+CGG 0.518060 7.2:-46793742 None:intergenic
CTACAACAGAAAATACTAGT+AGG 0.518211 7.2:-46793416 None:intergenic
GTGGAATGATCGGATGGGTA+AGG 0.519287 7.2:-46793261 None:intergenic
GACCTCAATCTCGAAATATC+CGG 0.523867 7.2:+46793368 MS.gene022905:CDS
TTCTTAACCTTAACTGCCGT+GGG 0.528995 7.2:+46793895 MS.gene022905:CDS
AACATTTGAGGTGGAATGAT+CGG 0.531612 7.2:-46793271 None:intergenic
GACTTTAGAGAAAAGTATGC+CGG 0.531878 7.2:-46793387 None:intergenic
ATTCTTAACCTTAACTGCCG+TGG 0.533952 7.2:+46793894 MS.gene022905:CDS
TAAGAGTTTACATGTTGTTG+AGG 0.546596 7.2:-46794322 None:intergenic
AGGCATTCTGGAGCAACAGT+TGG 0.548864 7.2:-46794117 None:intergenic
GATGTCTCTTGAGAGAAAGA+TGG 0.560761 7.2:-46793237 None:intergenic
GAAATTAGCTTCGTCGACAA+GGG 0.564897 7.2:+46794299 MS.gene022905:CDS
TTTGAGGTGGAATGATCGGA+TGG 0.579598 7.2:-46793267 None:intergenic
AGCGCAACGAGGAGGAATCG+AGG 0.604363 7.2:+46793346 MS.gene022905:CDS
AGATGCACTCTTAATTGTCA+TGG 0.619138 7.2:-46794241 None:intergenic
CAAGAACAAAACCTGACGAA+TGG 0.620486 7.2:-46793973 None:intergenic
TGAGATTGGAAATGAAGTTG+TGG 0.621523 7.2:+46794080 MS.gene022905:CDS
ACGTTCTGAGTTGTGTTGAA+AGG 0.632406 7.2:-46794137 None:intergenic
GTCTCTTGAGAGAAAGATGG+AGG 0.634576 7.2:-46793234 None:intergenic
TCACCCAATTCCACTTCCCA+CGG 0.638325 7.2:-46793911 None:intergenic
GTTTCAAAATCTAATCCACA+TGG 0.642529 7.2:+46793866 MS.gene022905:CDS
GGTTAAGAATAAGTTCCATG+TGG 0.650492 7.2:-46793881 None:intergenic
TTGAGGTGGAATGATCGGAT+GGG 0.654910 7.2:-46793266 None:intergenic
TACGCCGCAGCGCAACGAGG+AGG 0.656146 7.2:+46793338 MS.gene022905:CDS
TTGTAACAACATGAAATGTG+AGG 0.681761 7.2:+46794173 MS.gene022905:CDS
CATACAACTGAAGAACGACA+AGG 0.693463 7.2:-46793442 None:intergenic
GATTCCTCCTCGTTGCGCTG+CGG 0.709403 7.2:-46793342 None:intergenic
ATACAACTGAAGAACGACAA+GGG 0.710681 7.2:-46793441 None:intergenic
GTCTACGCCGCAGCGCAACG+AGG 0.717818 7.2:+46793335 MS.gene022905:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGTAAAAAATTGTTA+AGG - chr7.2:46794021-46794040 None:intergenic 10.0%
! AAGCTAATTTCGTTATCATT+TGG - chr7.2:46794290-46794309 None:intergenic 25.0%
! TAACAAAACTATTTCAATCG+TGG + chr7.2:46794048-46794067 MS.gene022905:intron 25.0%
! TGAAATAAACCCTAATTTCT+TGG - chr7.2:46793794-46793813 None:intergenic 25.0%
!! AACATAGATGAAGAGTTTTT+AGG - chr7.2:46793517-46793536 None:intergenic 25.0%
!!! AATGGTAAGATTTTGAAGTT+TGG - chr7.2:46793958-46793977 None:intergenic 25.0%
!!! ATGGTAAGATTTTGAAGTTT+GGG - chr7.2:46793957-46793976 None:intergenic 25.0%
AATGTACAACCAATTGAGAA+AGG - chr7.2:46793487-46793506 None:intergenic 30.0%
ATATGACTCTCCAAGAAATT+AGG + chr7.2:46793781-46793800 MS.gene022905:intron 30.0%
ATGCTTGCTCTAATCAAATT+CGG - chr7.2:46793677-46793696 None:intergenic 30.0%
CTACAACAGAAAATACTAGT+AGG - chr7.2:46793419-46793438 None:intergenic 30.0%
GATTAATGACCTTTCTCAAT+TGG + chr7.2:46793475-46793494 MS.gene022905:intron 30.0%
GCAATTAGAATGGATATTTG+TGG + chr7.2:46793604-46793623 MS.gene022905:CDS 30.0%
GTTTCAAAATCTAATCCACA+TGG + chr7.2:46793866-46793885 MS.gene022905:CDS 30.0%
TAAGAGTTTACATGTTGTTG+AGG - chr7.2:46794325-46794344 None:intergenic 30.0%
TAGAGCAATTGCAATTAGAA+TGG + chr7.2:46793594-46793613 MS.gene022905:CDS 30.0%
TATGACTCTCCAAGAAATTA+GGG + chr7.2:46793782-46793801 MS.gene022905:intron 30.0%
TGAAGTTGTGGATAATTTGA+TGG + chr7.2:46794092-46794111 MS.gene022905:CDS 30.0%
TTGTAACAACATGAAATGTG+AGG + chr7.2:46794173-46794192 MS.gene022905:CDS 30.0%
! AACTTTTGTATTTCACTGCA+GGG + chr7.2:46793819-46793838 MS.gene022905:intron 30.0%
! AAGAAGCTTTTGAACATTTG+AGG - chr7.2:46793286-46793305 None:intergenic 30.0%
! CTACTAGTATTTTCTGTTGT+AGG + chr7.2:46793417-46793436 MS.gene022905:CDS 30.0%
! TAACTTTTGTATTTCACTGC+AGG + chr7.2:46793818-46793837 MS.gene022905:intron 30.0%
!! AATTGCAATTGCTCTAGAAT+GGG - chr7.2:46793590-46793609 None:intergenic 30.0%
!! TAATTGCAATTGCTCTAGAA+TGG - chr7.2:46793591-46793610 None:intergenic 30.0%
!!! GGATTAGATTTTGAAACACA+GGG - chr7.2:46793863-46793882 None:intergenic 30.0%
!!! GGTAAGCATTGAAAATTTTC+CGG - chr7.2:46793656-46793675 None:intergenic 30.0%
!!! TGGATTAGATTTTGAAACAC+AGG - chr7.2:46793864-46793883 None:intergenic 30.0%
AAACTATTTCAATCGTGGAC+AGG + chr7.2:46794053-46794072 MS.gene022905:intron 35.0%
AACTCTTCATCTATGTTGTG+TGG + chr7.2:46793520-46793539 MS.gene022905:intron 35.0%
ACTCTTCATCTATGTTGTGT+GGG + chr7.2:46793521-46793540 MS.gene022905:intron 35.0%
AGATGCACTCTTAATTGTCA+TGG - chr7.2:46794244-46794263 None:intergenic 35.0%
ATACAACTGAAGAACGACAA+GGG - chr7.2:46793444-46793463 None:intergenic 35.0%
CTTTGCATAAAGCTTCTATC+AGG + chr7.2:46793560-46793579 MS.gene022905:intron 35.0%
GATTGACATCGTGTAAGTTA+TGG - chr7.2:46793310-46793329 None:intergenic 35.0%
GGTTAAGAATAAGTTCCATG+TGG - chr7.2:46793884-46793903 None:intergenic 35.0%
TCAAAATCTTACCATTCGTC+AGG + chr7.2:46793962-46793981 MS.gene022905:CDS 35.0%
TGAGATTGGAAATGAAGTTG+TGG + chr7.2:46794080-46794099 MS.gene022905:CDS 35.0%
TTGTCGTTCTTCAGTTGTAT+GGG + chr7.2:46793444-46793463 MS.gene022905:CDS 35.0%
! AACATTTGAGGTGGAATGAT+CGG - chr7.2:46793274-46793293 None:intergenic 35.0%
! AAGCTTTTGAACATTTGAGG+TGG - chr7.2:46793283-46793302 None:intergenic 35.0%
! GACTTTAGAGAAAAGTATGC+CGG - chr7.2:46793390-46793409 None:intergenic 35.0%
! TGAAAATTTTCCGGTAAAGC+AGG - chr7.2:46793647-46793666 None:intergenic 35.0%
! TTCTGTTTTCTTTGCTTTGC+CGG + chr7.2:46793723-46793742 MS.gene022905:CDS 35.0%
!! AGATGAAGAGTTTTTAGGAG+AGG - chr7.2:46793512-46793531 None:intergenic 35.0%
!! GATGAAGAGTTTTTAGGAGA+GGG - chr7.2:46793511-46793530 None:intergenic 35.0%
!! TTTCGTTATCATTTGGTGCT+TGG - chr7.2:46794283-46794302 None:intergenic 35.0%
!!! GATTTTGAAACACAGGGAAA+TGG - chr7.2:46793857-46793876 None:intergenic 35.0%
AAGGATTCTGTATGTAGAGC+TGG + chr7.2:46793748-46793767 MS.gene022905:CDS 40.0%
ATTCTTAACCTTAACTGCCG+TGG + chr7.2:46793894-46793913 MS.gene022905:CDS 40.0%
CAAGAACAAAACCTGACGAA+TGG - chr7.2:46793976-46793995 None:intergenic 40.0%
CATACAACTGAAGAACGACA+AGG - chr7.2:46793445-46793464 None:intergenic 40.0%
CTACATACAGAATCCTTGTC+CGG - chr7.2:46793745-46793764 None:intergenic 40.0%
CTTGTCGTTCTTCAGTTGTA+TGG + chr7.2:46793443-46793462 MS.gene022905:CDS 40.0%
GACCTCAATCTCGAAATATC+CGG + chr7.2:46793368-46793387 MS.gene022905:CDS 40.0%
GATGTCTCTTGAGAGAAAGA+TGG - chr7.2:46793240-46793259 None:intergenic 40.0%
GCATTTCAGACTTGTCTTCT+TGG + chr7.2:46793693-46793712 MS.gene022905:CDS 40.0%
GGAGGACACAAATCTGAAAA+AGG - chr7.2:46793219-46793238 None:intergenic 40.0%
TTCTTAACCTTAACTGCCGT+GGG + chr7.2:46793895-46793914 MS.gene022905:CDS 40.0%
! ACGTTCTGAGTTGTGTTGAA+AGG - chr7.2:46794140-46794159 None:intergenic 40.0%
! GAAATTAGCTTCGTCGACAA+GGG + chr7.2:46794299-46794318 MS.gene022905:CDS 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG - chr7.2:46794132-46794151 None:intergenic 40.0%
CGTGGACAGGATATTGAGAT+TGG + chr7.2:46794066-46794085 MS.gene022905:intron 45.0%
CTCAGAACGTGCATGCTTAA+AGG + chr7.2:46794150-46794169 MS.gene022905:CDS 45.0%
GTCTCTTGAGAGAAAGATGG+AGG - chr7.2:46793237-46793256 None:intergenic 45.0%
TGCCGGATATTTCGAGATTG+AGG - chr7.2:46793373-46793392 None:intergenic 45.0%
TTGAGGTGGAATGATCGGAT+GGG - chr7.2:46793269-46793288 None:intergenic 45.0%
TTTCTTTGCTTTGCCGGACA+AGG + chr7.2:46793729-46793748 MS.gene022905:CDS 45.0%
! CGAAATTAGCTTCGTCGACA+AGG + chr7.2:46794298-46794317 MS.gene022905:CDS 45.0%
! TTTGAGGTGGAATGATCGGA+TGG - chr7.2:46793270-46793289 None:intergenic 45.0%
CAACCAGTCACCTGCTTTAC+CGG + chr7.2:46793634-46793653 MS.gene022905:CDS 50.0%
GTGGAATGATCGGATGGGTA+AGG - chr7.2:46793264-46793283 None:intergenic 50.0%
TCACCCAATTCCACTTCCCA+CGG - chr7.2:46793914-46793933 None:intergenic 50.0%
TTTCCGGTAAAGCAGGTGAC+TGG - chr7.2:46793640-46793659 None:intergenic 50.0%
!! AGGCATTCTGGAGCAACAGT+TGG - chr7.2:46794120-46794139 None:intergenic 50.0%
ACCTTAACTGCCGTGGGAAG+TGG + chr7.2:46793901-46793920 MS.gene022905:CDS 55.0%
ACTGCCGTGGGAAGTGGAAT+TGG + chr7.2:46793907-46793926 MS.gene022905:CDS 55.0%
CTGCCGTGGGAAGTGGAATT+GGG + chr7.2:46793908-46793927 MS.gene022905:CDS 55.0%
TCCACTTCCCACGGCAGTTA+AGG - chr7.2:46793905-46793924 None:intergenic 55.0%
AGCGCAACGAGGAGGAATCG+AGG + chr7.2:46793346-46793365 MS.gene022905:CDS 60.0%
GATTCCTCCTCGTTGCGCTG+CGG - chr7.2:46793345-46793364 None:intergenic 60.0%
GTCTACGCCGCAGCGCAACG+AGG + chr7.2:46793335-46793354 MS.gene022905:CDS 70.0%
TACGCCGCAGCGCAACGAGG+AGG + chr7.2:46793338-46793357 MS.gene022905:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 46793210 46794353 46793210 ID=MS.gene022905
chr7.2 mRNA 46793210 46794353 46793210 ID=MS.gene022905.t1;Parent=MS.gene022905
chr7.2 exon 46793210 46793465 46793210 ID=MS.gene022905.t1.exon1;Parent=MS.gene022905.t1
chr7.2 CDS 46793210 46793465 46793210 ID=cds.MS.gene022905.t1;Parent=MS.gene022905.t1
chr7.2 exon 46793582 46793769 46793582 ID=MS.gene022905.t1.exon2;Parent=MS.gene022905.t1
chr7.2 CDS 46793582 46793769 46793582 ID=cds.MS.gene022905.t1;Parent=MS.gene022905.t1
chr7.2 exon 46793840 46793983 46793840 ID=MS.gene022905.t1.exon3;Parent=MS.gene022905.t1
chr7.2 CDS 46793840 46793983 46793840 ID=cds.MS.gene022905.t1;Parent=MS.gene022905.t1
chr7.2 exon 46794075 46794353 46794075 ID=MS.gene022905.t1.exon4;Parent=MS.gene022905.t1
chr7.2 CDS 46794075 46794353 46794075 ID=cds.MS.gene022905.t1;Parent=MS.gene022905.t1
Gene Sequence

>MS.gene022905

ATGACTCCTTTTTCAGATTTGTGTCCTCCATCTTTCTCTCAAGAGACATCACCTTACCCATCCGATCATTCCACCTCAAATGTTCAAAAGCTTCTTTCCATAACTTACACGATGTCAATCGATTTGTCTACGCCGCAGCGCAACGAGGAGGAATCGAGGACCTCAATCTCGAAATATCCGGCATACTTTTCTCTAAAGTCAATTTACCTACTAGTATTTTCTGTTGTAGGACCCTTGTCGTTCTTCAGTTGTATGGGTTAAAAGTGATTAATGACCTTTCTCAATTGGTTGTACATTTCCCTCTCCTAAAAACTCTTCATCTATGTTGTGTGGGATTCGAATGTCATGAACTTTGCATAAAGCTTCTATCAGGATGTCCCATTCTAGAGCAATTGCAATTAGAATGGATATTTGTGGCGAATGACAACCAGTCACCTGCTTTACCGGAAAATTTTCAATGCTTACCGAATTTGATTAGAGCAAGCATTTCAGACTTGTCTTCTTGGAAAAATGTTCTGTTTTCTTTGCTTTGCCGGACAAGGATTCTGTATGTAGAGCTGGTAAGAATATTATATGACTCTCCAAGAAATTAGGGTTTATTTCATTTCTAACTTTTGTATTTCACTGCAGGGCAATTGTTATTGCCATTTCCCTGTGTTTCAAAATCTAATCCACATGGAACTTATTCTTAACCTTAACTGCCGTGGGAAGTGGAATTGGGTGATAGAAGTGTTGAGACGCTGTCCCAAACTTCAAAATCTTACCATTCGTCAGGTTTTGTTCTTGTCTAAGATTTTCTTTTATTTTACCTTAACAATTTTTTACATATTTTATTTTATAACAAAACTATTTCAATCGTGGACAGGATATTGAGATTGGAAATGAAGTTGTGGATAATTTGATGGATCCAACTGTTGCTCCAGAATGCCTTTCAACACAACTCAGAACGTGCATGCTTAAAGGTTGTAACAACATGAAATGTGAGGTTCAATTTGCAAACTATATTATGCAGAATGCGAAAGTATTGAACACCATGACAATTAAGAGTGCATCTTACATAGATACAAATACCAAGCACCAAATGATAACGAAATTAGCTTCGTCGACAAGGGCCTCAACAACATGTAAACTCTTATTTGATTGA
Protein sequence

>MS.gene022905.t1

MTPFSDLCPPSFSQETSPYPSDHSTSNVQKLLSITYTMSIDLSTPQRNEEESRTSISKYPAYFSLKSIYLLVFSVVGPLSFFSCMGCPILEQLQLEWIFVANDNQSPALPENFQCLPNLIRASISDLSSWKNVLFSLLCRTRILYVELGNCYCHFPVFQNLIHMELILNLNCRGKWNWVIEVLRRCPKLQNLTIRQDIEIGNEVVDNLMDPTVAPECLSTQLRTCMLKGCNNMKCEVQFANYIMQNAKVLNTMTIKSASYIDTNTKHQMITKLASSTRASTTCKLLFD