AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22902


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22902.t1 MTR_7g114490 95.238 147 7 0 1 147 1 147 1.84e-99 295
MS.gene22902.t1 MTR_7g114560 89.796 147 15 0 1 147 1 147 1.17e-92 276
MS.gene22902.t1 MTR_5g076700 88.435 147 17 0 1 147 1 147 1.62e-91 273
MS.gene22902.t1 MTR_7g114550 85.714 147 21 0 1 147 1 147 1.84e-89 268
MS.gene22902.t1 MTR_7g114500 82.000 150 27 0 1 150 1 150 2.19e-88 254
MS.gene22902.t1 MTR_7g114470 84.932 146 22 0 2 147 3 148 2.61e-88 265
MS.gene22902.t1 MTR_3g051790 76.871 147 34 0 1 147 4 150 1.16e-81 238
MS.gene22902.t1 MTR_7g114520 78.912 147 30 1 2 147 3 149 5.18e-79 241
MS.gene22902.t1 MTR_0042s0230 63.889 144 52 0 6 149 5 148 1.91e-67 201
MS.gene22902.t1 MTR_1g040320 63.380 142 52 0 6 147 5 146 6.77e-63 199
MS.gene22902.t1 MTR_1g040175 61.268 142 55 0 6 147 5 146 5.36e-62 197
MS.gene22902.t1 MTR_1g040315 61.972 142 54 0 6 147 5 146 7.57e-60 191
MS.gene22902.t1 MTR_1g040215 59.155 142 58 0 6 147 5 146 2.49e-59 190
MS.gene22902.t1 MTR_8g039950 62.992 127 47 0 3 129 2 128 1.98e-58 178
MS.gene22902.t1 MTR_1g081660 60.274 146 56 2 3 147 11 155 3.47e-56 182
MS.gene22902.t1 MTR_1g040195 57.042 142 38 1 6 147 5 123 2.18e-49 164
MS.gene22902.t1 MTR_7g114417 91.304 46 4 0 98 143 38 83 1.66e-24 90.5
MS.gene22902.t1 MTR_7g114417 83.333 42 7 0 1 42 1 42 2.15e-17 72.4
MS.gene22902.t1 MTR_7g027175 35.385 130 81 2 13 142 19 145 2.37e-23 94.7
MS.gene22902.t1 MTR_8g096530 32.143 140 92 2 8 147 5 141 5.76e-22 90.9
MS.gene22902.t1 MTR_3g098980 35.971 139 84 2 10 147 14 148 2.91e-20 85.9
MS.gene22902.t1 MTR_3g112180 33.333 138 80 3 18 150 20 150 2.83e-18 80.5
MS.gene22902.t1 MTR_7g110610 37.963 108 62 1 6 113 1 103 3.21e-18 80.1
MS.gene22902.t1 MTR_4g088765 44.444 72 40 0 3 74 2 73 1.55e-17 73.6
MS.gene22902.t1 MTR_4g055170 34.351 131 80 2 17 143 19 147 1.27e-16 75.9
MS.gene22902.t1 MTR_4g013050 38.144 97 54 2 20 116 14 104 3.39e-15 71.6
MS.gene22902.t1 MTR_0502s0010 65.957 47 16 0 101 147 1 47 3.79e-15 70.1
MS.gene22902.t1 MTR_3g071320 37.838 111 67 2 9 117 4 114 2.78e-14 68.9
MS.gene22902.t1 MTR_3g465930 31.884 138 84 4 4 133 6 141 1.22e-12 64.3
MS.gene22902.t1 MTR_2g105330 32.432 111 71 3 6 116 1 107 1.74e-12 63.9
MS.gene22902.t1 MTR_4g007540 39.474 76 45 1 41 116 33 107 2.74e-12 63.5
MS.gene22902.t1 MTR_1g053315 29.932 147 90 5 8 147 24 164 7.07e-12 62.4
MS.gene22902.t1 MTR_3g026950 34.343 99 62 2 18 116 10 105 1.18e-11 61.6
MS.gene22902.t1 MTR_8g075610 32.000 100 66 2 17 116 1 98 1.44e-11 61.2
MS.gene22902.t1 MTR_3g049150 31.298 131 84 4 18 147 10 135 2.09e-11 60.8
MS.gene22902.t1 MTR_2g064495 31.532 111 72 3 6 116 1 107 3.17e-11 60.5
MS.gene22902.t1 MTR_5g084870 33.043 115 65 4 16 123 9 118 4.22e-11 60.1
MS.gene22902.t1 MTR_7g085990 32.039 103 66 3 16 116 8 108 4.54e-11 60.1
MS.gene22902.t1 MTR_7g085930 32.039 103 66 3 16 116 12 112 5.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22902.t1 AT5G17540 61.905 147 53 2 3 147 2 147 5.97e-58 187
MS.gene22902.t1 AT3G03480 58.784 148 58 2 2 147 11 157 3.31e-51 169
MS.gene22902.t1 AT3G48720 35.417 144 89 3 8 150 7 147 1.13e-23 95.5
MS.gene22902.t1 AT5G41040 36.090 133 82 2 10 142 33 162 4.27e-22 91.3
MS.gene22902.t1 AT5G41040 36.090 133 82 2 10 142 17 146 5.75e-22 90.9
MS.gene22902.t1 AT5G63560 35.862 145 84 3 10 150 9 148 8.19e-22 90.5
MS.gene22902.t1 AT1G27620 38.971 136 75 4 13 147 12 140 5.82e-21 88.2
MS.gene22902.t1 AT5G57840 36.449 107 64 2 10 115 3 106 1.04e-15 73.2
MS.gene22902.t1 AT2G40230 38.462 104 57 3 10 109 5 105 1.78e-13 67.0
MS.gene22902.t1 AT3G62160 34.234 111 67 2 6 115 1 106 2.79e-13 66.2
MS.gene22902.t1 AT5G48930 32.824 131 84 3 17 147 10 136 3.40e-13 66.2
MS.gene22902.t1 AT2G19070 34.821 112 71 1 36 147 29 138 5.43e-13 65.5
MS.gene22902.t1 AT5G07080 34.783 115 72 3 3 114 7 121 9.78e-13 64.7
MS.gene22902.t1 AT3G47170 34.513 113 69 3 8 115 10 122 1.35e-12 64.3
MS.gene22902.t1 AT1G31490 33.028 109 68 3 7 111 3 110 5.64e-11 59.7

Find 0 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATAATATGTTCC+AGG + 51736:6947-6966 MS.gene22902:intron 15.0%
! AGTGAGTATGTCAAATTTAT+TGG - 51736:6926-6945 MS.gene22902:intergenic 25.0%
! ATGTAACACTTGATCAATTT+GGG + 51736:6751-6770 MS.gene22902:CDS 25.0%
! CATGTCTAAGAACTTTAATA+GGG - 51736:6611-6630 MS.gene22902:intergenic 25.0%
GATGTAACACTTGATCAATT+TGG + 51736:6750-6769 MS.gene22902:CDS 30.0%
GCATGTCTAAGAACTTTAAT+AGG - 51736:6612-6631 MS.gene22902:intergenic 30.0%
TGACGATAGATAAACATCAT+AGG - 51736:6564-6583 MS.gene22902:intergenic 30.0%
TGTAACACTTGATCAATTTG+GGG + 51736:6752-6771 MS.gene22902:CDS 30.0%
! GATAATAGTTTAACTTCACG+AGG - 51736:6504-6523 MS.gene22902:intergenic 30.0%
!! ATAGAAGTTCTTTGAAGCAT+GGG - 51736:6797-6816 MS.gene22902:intergenic 30.0%
!! TATAGAAGTTCTTTGAAGCA+TGG - 51736:6798-6817 MS.gene22902:intergenic 30.0%
!! TCAATAATTAGTTCTGATCC+TGG - 51736:6828-6847 MS.gene22902:intergenic 30.0%
!!! GGGTTTTTTTCTTTCATTGA+CGG - 51736:6591-6610 MS.gene22902:intergenic 30.0%
ATTACTATCCATTTGCAGGA+AGG + 51736:6652-6671 MS.gene22902:CDS 35.0%
GAATGCGATAATTGAAACGT+AGG - 51736:6904-6923 MS.gene22902:intergenic 35.0%
GTGTATTACTATCCATTTGC+AGG + 51736:6648-6667 MS.gene22902:CDS 35.0%
TCTGACATAGATGATCAAGA+AGG + 51736:6522-6541 MS.gene22902:CDS 35.0%
TTTACCTGTATGAGTCGAAT+GGG - 51736:6855-6874 MS.gene22902:intergenic 35.0%
! TTTTACCTGTATGAGTCGAA+TGG - 51736:6856-6875 MS.gene22902:intergenic 35.0%
ATCCATTTGCAGGAAGGATT+AGG + 51736:6658-6677 MS.gene22902:CDS 40.0%
CACCATTATTGTTCACAGTG+CGG + 51736:6439-6458 MS.gene22902:CDS 40.0%
GAACTTCTATACGATGTTCC+AGG + 51736:6807-6826 MS.gene22902:CDS 40.0%
TCCATTTGCAGGAAGGATTA+GGG + 51736:6659-6678 MS.gene22902:CDS 40.0%
TTACCTGTATGAGTCGAATG+GGG - 51736:6854-6873 MS.gene22902:intergenic 40.0%
! TAGTTTAACTTCACGAGGAG+TGG - 51736:6499-6518 MS.gene22902:intergenic 40.0%
!! AAGTTGATGGTGGATTGTAC+TGG + 51736:6696-6715 MS.gene22902:CDS 40.0%
!! AGTTCTTTGAAGCATGGGAA+TGG - 51736:6792-6811 MS.gene22902:intergenic 40.0%
!! GTTCTTTGAAGCATGGGAAT+GGG - 51736:6791-6810 MS.gene22902:intergenic 40.0%
!! TTCTTTGAAGCATGGGAATG+GGG - 51736:6790-6809 MS.gene22902:intergenic 40.0%
ATTTGCAGGAAGGATTAGGG+AGG + 51736:6662-6681 MS.gene22902:CDS 45.0%
CATTATTGTTCACAGTGCGG+AGG + 51736:6442-6461 MS.gene22902:CDS 45.0%
CTCCGCACTGTGAACAATAA+TGG - 51736:6444-6463 MS.gene22902:intergenic 45.0%
TCCCTAATCCTTCCTGCAAA+TGG - 51736:6663-6682 MS.gene22902:intergenic 45.0%
TTTGCAGGAAGGATTAGGGA+GGG + 51736:6663-6682 MS.gene22902:CDS 45.0%
!! ATGGTGGATTGTACTGGTGA+GGG + 51736:6702-6721 MS.gene22902:CDS 45.0%
!! TCTTTGAAGCATGGGAATGG+GGG - 51736:6789-6808 MS.gene22902:intergenic 45.0%
!! GATGGTGGATTGTACTGGTG+AGG + 51736:6701-6720 MS.gene22902:CDS 50.0%
CCTGTATGAGTCGAATGGGG+CGG - 51736:6851-6870 MS.gene22902:intergenic 55.0%
!! GAAGGATTAGGGAGGGTGCT+GGG + 51736:6670-6689 MS.gene22902:CDS 55.0%
!! TGCTGGGCGTAAGTTGATGG+TGG + 51736:6686-6705 MS.gene22902:CDS 55.0%
CCGCCCCATTCGACTCATAC+AGG + 51736:6848-6867 MS.gene22902:CDS 60.0%
TCACGAGGAGTGGAAGCAGC+TGG - 51736:6489-6508 MS.gene22902:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG + 51736:6669-6688 MS.gene22902:CDS 60.0%
!! GGGTGCTGGGCGTAAGTTGA+TGG + 51736:6683-6702 MS.gene22902:CDS 60.0%
CGAGGAGTGGAAGCAGCTGG+TGG - 51736:6486-6505 MS.gene22902:intergenic 65.0%
! CTGGTGGCACCAGCTCTGGT+TGG - 51736:6470-6489 MS.gene22902:intergenic 65.0%
GCAGCTGGTGGCACCAGCTC+TGG - 51736:6474-6493 MS.gene22902:intergenic 70.0%
GCGGAGGAGCCAACCAGAGC+TGG + 51736:6458-6477 MS.gene22902:CDS 70.0%


Chromosome Type Strat End Strand Name
51736 gene 6429 6980 6429 ID=MS.gene22902
51736 mRNA 6429 6980 6429 ID=MS.gene22902.t1;Parent=MS.gene22902
51736 exon 6429 6869 6429 ID=MS.gene22902.t1.exon1;Parent=MS.gene22902.t1
51736 CDS 6429 6869 6429 ID=cds.MS.gene22902.t1;Parent=MS.gene22902.t1
51736 exon 6969 6980 6969 ID=MS.gene22902.t1.exon2;Parent=MS.gene22902.t1
51736 CDS 6969 6980 6969 ID=cds.MS.gene22902.t1;Parent=MS.gene22902.t1
Gene Sequence

>MS.gene22902

ATGACTTCAGCACCATTATTGTTCACAGTGCGGAGGAGCCAACCAGAGCTGGTGCCACCAGCTGCTTCCACTCCTCGTGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGCTTGCGTTTCAATATTCCTATGATGTTTATCTATCGTCATGAACCGTCAATGAAAGAAAAAAACCCTATTAAAGTTCTTAGACATGCACTCTCACAAGCACTTGTGTATTACTATCCATTTGCAGGAAGGATTAGGGAGGGTGCTGGGCGTAAGTTGATGGTGGATTGTACTGGTGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGGGACGCTTTGCATCCCCCATTCCCATGCTTCAAAGAACTTCTATACGATGTTCCAGGATCAGAACTAATTATTGACCGCCCCATTCGACTCATACAGGTAAAATTATGCTAGTAGATGATCATGAAAGCCTACGTTTCAATTATCGCATTCCAATAAATTTGACATACTCACTTTTTTTTTTATAATATGTTCCAGGATCTGAACTAA

Protein sequence

>MS.gene22902.t1

MTSAPLLFTVRRSQPELVPPAASTPREVKLLSDIDDQEGLRFNIPMMFIYRHEPSMKEKNPIKVLRHALSQALVYYYPFAGRIREGAGRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFPCFKELLYDVPGSELIIDRPIRLIQDLN