Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49776.t1 | XP_003630591.1 | 96.9 | 327 | 7 | 1 | 1 | 327 | 1 | 324 | 1.10E-153 | 552.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49776.t1 | Q9SW18 | 66.7 | 294 | 87 | 4 | 39 | 327 | 25 | 312 | 2.5e-98 | 360.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49776.t1 | G7LIT9 | 96.9 | 327 | 7 | 1 | 1 | 327 | 1 | 324 | 8.0e-154 | 552.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49776 | 0.825785 | 3.88E-54 | -1.69E-46 |
| MS.gene049171 | MS.gene49776 | 0.843413 | 1.42E-58 | -1.69E-46 |
| MS.gene049173 | MS.gene49776 | 0.838123 | 3.47E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene49776 | 0.875514 | 2.90E-68 | -1.69E-46 |
| MS.gene049222 | MS.gene49776 | 0.850825 | 1.32E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene49776 | 0.904575 | 1.06E-79 | -1.69E-46 |
| MS.gene049320 | MS.gene49776 | 0.888714 | 4.62E-73 | -1.69E-46 |
| MS.gene04939 | MS.gene49776 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene49776 | 0.839383 | 1.64E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene49776 | 0.805273 | 1.45E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene49776 | 0.863222 | 2.90E-64 | -1.69E-46 |
| MS.gene049615 | MS.gene49776 | 0.805687 | 1.18E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene49776 | 0.854435 | 1.23E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene49776 | 0.831728 | 1.42E-55 | -1.69E-46 |
| MS.gene049828 | MS.gene49776 | 0.815205 | 1.04E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene49776 | 0.823619 | 1.26E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene49776 | 0.934095 | 6.86E-96 | -1.69E-46 |
| MS.gene050165 | MS.gene49776 | 0.91848 | 1.48E-86 | -1.69E-46 |
| MS.gene050333 | MS.gene49776 | 0.893214 | 7.74E-75 | -1.69E-46 |
| MS.gene050353 | MS.gene49776 | -0.823975 | 1.04E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene49776 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene050475 | MS.gene49776 | -0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene49776 | 0.882073 | 1.41E-70 | -1.69E-46 |
| MS.gene050518 | MS.gene49776 | 0.883655 | 3.73E-71 | -1.69E-46 |
| MS.gene050577 | MS.gene49776 | 0.823099 | 1.66E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene49776 | 0.872377 | 3.33E-67 | -1.69E-46 |
| MS.gene050675 | MS.gene49776 | 0.843132 | 1.69E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene49776 | 0.870317 | 1.60E-66 | -1.69E-46 |
| MS.gene050747 | MS.gene49776 | 0.815761 | 7.84E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene49776 | 0.901028 | 4.05E-78 | -1.69E-46 |
| MS.gene050770 | MS.gene49776 | 0.901801 | 1.86E-78 | -1.69E-46 |
| MS.gene050772 | MS.gene49776 | 0.848289 | 6.74E-60 | -1.69E-46 |
| MS.gene050781 | MS.gene49776 | 0.822731 | 2.02E-53 | -1.69E-46 |
| MS.gene050783 | MS.gene49776 | 0.816647 | 4.97E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene49776 | 0.822244 | 2.63E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene49776 | 0.809451 | 1.88E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene49776 | 0.872614 | 2.78E-67 | -1.69E-46 |
| MS.gene05100 | MS.gene49776 | 0.918225 | 2.02E-86 | -1.69E-46 |
| MS.gene051228 | MS.gene49776 | 0.853353 | 2.53E-61 | -1.69E-46 |
| MS.gene051317 | MS.gene49776 | 0.807199 | 5.68E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene49776 | 0.845543 | 3.80E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene49776 | 0.822749 | 2.01E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene49776 | 0.833561 | 4.97E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene49776 | 0.893825 | 4.38E-75 | -1.69E-46 |
| MS.gene051858 | MS.gene49776 | 0.822305 | 2.54E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene49776 | 0.847188 | 1.35E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene49776 | 0.818996 | 1.46E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene49776 | 0.910496 | 1.76E-82 | -1.69E-46 |
| MS.gene052290 | MS.gene49776 | 0.854116 | 1.52E-61 | -1.69E-46 |
| MS.gene052326 | MS.gene49776 | 0.814223 | 1.72E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene49776 | 0.865005 | 8.08E-65 | -1.69E-46 |
| MS.gene052421 | MS.gene49776 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene052615 | MS.gene49776 | 0.838173 | 3.37E-57 | -1.69E-46 |
| MS.gene052670 | MS.gene49776 | 0.829623 | 4.64E-55 | -1.69E-46 |
| MS.gene052916 | MS.gene49776 | 0.814068 | 1.86E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene49776 | 0.879034 | 1.73E-69 | -1.69E-46 |
| MS.gene053207 | MS.gene49776 | 0.835028 | 2.13E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene49776 | 0.881392 | 2.49E-70 | -1.69E-46 |
| MS.gene053284 | MS.gene49776 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene053285 | MS.gene49776 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene49776 | 0.880317 | 6.06E-70 | -1.69E-46 |
| MS.gene053322 | MS.gene49776 | 0.882163 | 1.31E-70 | -1.69E-46 |
| MS.gene053574 | MS.gene49776 | 0.802356 | 5.83E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene49776 | 0.883677 | 3.66E-71 | -1.69E-46 |
| MS.gene053915 | MS.gene49776 | 0.817914 | 2.58E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene49776 | 0.811826 | 5.76E-51 | -1.69E-46 |
| MS.gene054374 | MS.gene49776 | 0.80283 | 4.66E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene49776 | 0.872464 | 3.12E-67 | -1.69E-46 |
| MS.gene054408 | MS.gene49776 | 0.819563 | 1.09E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene49776 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene49776 | 0.858569 | 7.53E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene49776 | 0.904477 | 1.18E-79 | -1.69E-46 |
| MS.gene05470 | MS.gene49776 | 0.812826 | 3.49E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene49776 | 0.879138 | 1.59E-69 | -1.69E-46 |
| MS.gene054803 | MS.gene49776 | 0.878235 | 3.31E-69 | -1.69E-46 |
| MS.gene054804 | MS.gene49776 | 0.883018 | 6.40E-71 | -1.69E-46 |
| MS.gene054954 | MS.gene49776 | 0.874769 | 5.21E-68 | -1.69E-46 |
| MS.gene05505 | MS.gene49776 | 0.818719 | 1.69E-52 | -1.69E-46 |
| MS.gene055212 | MS.gene49776 | 0.80695 | 6.41E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene49776 | 0.861723 | 8.40E-64 | -1.69E-46 |
| MS.gene055362 | MS.gene49776 | 0.89022 | 1.20E-73 | -1.69E-46 |
| MS.gene055397 | MS.gene49776 | 0.912075 | 2.95E-83 | -1.69E-46 |
| MS.gene055412 | MS.gene49776 | 0.823793 | 1.14E-53 | -1.69E-46 |
| MS.gene055499 | MS.gene49776 | 0.915702 | 4.30E-85 | -1.69E-46 |
| MS.gene055502 | MS.gene49776 | 0.848032 | 7.94E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene49776 | 0.815651 | 8.29E-52 | -1.69E-46 |
| MS.gene055634 | MS.gene49776 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene49776 | 0.836918 | 7.06E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene49776 | 0.855008 | 8.41E-62 | -1.69E-46 |
| MS.gene055647 | MS.gene49776 | 0.846771 | 1.76E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene49776 | 0.827218 | 1.77E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene49776 | 0.82949 | 5.00E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene49776 | 0.824356 | 8.44E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene49776 | 0.821035 | 5.00E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene49776 | 0.812087 | 5.06E-51 | -1.69E-46 |
| MS.gene055956 | MS.gene49776 | -0.806401 | 8.37E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene49776 | 0.854395 | 1.27E-61 | -1.69E-46 |
| MS.gene056374 | MS.gene49776 | 0.889122 | 3.21E-73 | -1.69E-46 |
| MS.gene056409 | MS.gene49776 | 0.832404 | 9.64E-56 | -1.69E-46 |
| MS.gene056449 | MS.gene49776 | 0.844559 | 7.01E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene49776 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene49776 | 0.833358 | 5.58E-56 | -1.69E-46 |
| MS.gene056549 | MS.gene49776 | 0.810037 | 1.41E-50 | -1.69E-46 |
| MS.gene056610 | MS.gene49776 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene49776 | 0.896406 | 3.80E-76 | -1.69E-46 |
| MS.gene056692 | MS.gene49776 | 0.825819 | 3.81E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene49776 | 0.827993 | 1.15E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene49776 | 0.915593 | 4.89E-85 | -1.69E-46 |
| MS.gene057146 | MS.gene49776 | 0.811301 | 7.50E-51 | -1.69E-46 |
| MS.gene057246 | MS.gene49776 | 0.831359 | 1.75E-55 | -1.69E-46 |
| MS.gene057295 | MS.gene49776 | 0.820473 | 6.73E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene49776 | 0.803766 | 2.98E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene49776 | 0.864586 | 1.09E-64 | -1.69E-46 |
| MS.gene057831 | MS.gene49776 | 0.829685 | 4.48E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene49776 | 0.824544 | 7.62E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene49776 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene49776 | 0.840036 | 1.11E-57 | -1.69E-46 |
| MS.gene058419 | MS.gene49776 | 0.883398 | 4.64E-71 | -1.69E-46 |
| MS.gene058544 | MS.gene49776 | 0.839683 | 1.37E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene49776 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene49776 | 0.85481 | 9.61E-62 | -1.69E-46 |
| MS.gene058773 | MS.gene49776 | 0.872657 | 2.69E-67 | -1.69E-46 |
| MS.gene05883 | MS.gene49776 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene058903 | MS.gene49776 | 0.814463 | 1.52E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene49776 | 0.888283 | 6.77E-73 | -1.69E-46 |
| MS.gene059023 | MS.gene49776 | 0.82449 | 7.85E-54 | -1.69E-46 |
| MS.gene059029 | MS.gene49776 | 0.861691 | 8.59E-64 | -1.69E-46 |
| MS.gene059102 | MS.gene49776 | -0.827254 | 1.73E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene49776 | 0.808205 | 3.47E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene49776 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene49776 | 0.908677 | 1.32E-81 | -1.69E-46 |
| MS.gene059718 | MS.gene49776 | 0.876767 | 1.07E-68 | -1.69E-46 |
| MS.gene059756 | MS.gene49776 | 0.841557 | 4.42E-58 | -1.69E-46 |
| MS.gene059801 | MS.gene49776 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene059858 | MS.gene49776 | 0.861446 | 1.02E-63 | -1.69E-46 |
| MS.gene059865 | MS.gene49776 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene49776 | 0.820427 | 6.90E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene49776 | 0.892973 | 9.68E-75 | -1.69E-46 |
| MS.gene060193 | MS.gene49776 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene060341 | MS.gene49776 | 0.809388 | 1.94E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene49776 | 0.842998 | 1.84E-58 | -1.69E-46 |
| MS.gene060703 | MS.gene49776 | 0.818754 | 1.66E-52 | -1.69E-46 |
| MS.gene060728 | MS.gene49776 | 0.815943 | 7.13E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene49776 | 0.841274 | 5.25E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene49776 | 0.849004 | 4.27E-60 | -1.69E-46 |
| MS.gene06092 | MS.gene49776 | 0.825818 | 3.81E-54 | -1.69E-46 |
| MS.gene061134 | MS.gene49776 | 0.815271 | 1.01E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene49776 | 0.903891 | 2.17E-79 | -1.69E-46 |
| MS.gene061171 | MS.gene49776 | 0.857348 | 1.74E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene49776 | 0.910647 | 1.48E-82 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49776.t1 | MTR_8g100120 | 96.942 | 327 | 7 | 1 | 1 | 327 | 1 | 324 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49776.t1 | AT4G25080 | 73.469 | 294 | 67 | 4 | 39 | 327 | 39 | 326 | 3.66e-154 | 435 |
| MS.gene49776.t1 | AT4G25080 | 73.469 | 294 | 67 | 4 | 39 | 327 | 25 | 312 | 5.89e-154 | 434 |
| MS.gene49776.t1 | AT4G25080 | 73.469 | 294 | 67 | 4 | 39 | 327 | 25 | 312 | 5.89e-154 | 434 |
| MS.gene49776.t1 | AT4G25080 | 73.469 | 294 | 67 | 4 | 39 | 327 | 25 | 312 | 5.89e-154 | 434 |
| MS.gene49776.t1 | AT4G25080 | 73.469 | 294 | 67 | 4 | 39 | 327 | 25 | 312 | 5.89e-154 | 434 |
| MS.gene49776.t1 | AT4G25080 | 77.689 | 251 | 50 | 2 | 77 | 327 | 1 | 245 | 6.72e-144 | 406 |
Find 104 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGCTCACCTTGCTTCTT+TGG | 0.174968 | 4.4:+7180775 | MS.gene49776:CDS |
| TGTTCGCGTCGTCGTCTTTC+CGG | 0.201498 | 4.4:-7179256 | None:intergenic |
| CTACTTGTGTCCAGTGAAAA+TGG | 0.269974 | 4.4:+7180632 | MS.gene49776:CDS |
| GGTGAGTGATTTAGAGAGTT+TGG | 0.296867 | 4.4:+7180682 | MS.gene49776:CDS |
| TTTGTTGTGGGTGGCGGGAG+AGG | 0.307225 | 4.4:-7179092 | None:intergenic |
| ATAGAGTTCAACGGGATATT+AGG | 0.312977 | 4.4:+7179383 | MS.gene49776:CDS |
| TGTGATGCTGGTTGTGGTAC+TGG | 0.330850 | 4.4:+7179481 | MS.gene49776:CDS |
| GGCGATTGTTGTGCCGTCTA+TGG | 0.335739 | 4.4:-7179179 | None:intergenic |
| GCATCATAATAAAATGTCTT+AGG | 0.351793 | 4.4:-7180827 | None:intergenic |
| GAAAGATGAAGGGCGACTTC+AGG | 0.355366 | 4.4:+7179447 | MS.gene49776:CDS |
| CAACGATGGAAGAAGATTTA+CGG | 0.365499 | 4.4:+7179343 | MS.gene49776:CDS |
| GTTCGCGTCGTCGTCTTTCC+GGG | 0.385307 | 4.4:-7179255 | None:intergenic |
| TTGTGGGTGGCGGGAGAGGA+GGG | 0.387295 | 4.4:-7179088 | None:intergenic |
| GGAAAGACGACGACGCGAAC+AGG | 0.395017 | 4.4:+7179258 | MS.gene49776:CDS |
| GCAACAGCCGCCGACGTTAC+CGG | 0.402705 | 4.4:+7179154 | MS.gene49776:CDS |
| GTTGTGGGTGGCGGGAGAGG+AGG | 0.411029 | 4.4:-7179089 | None:intergenic |
| GGTGTTACTATTTGTGATGC+TGG | 0.416395 | 4.4:+7179469 | MS.gene49776:CDS |
| AAAGGGCGTTGCGCAAGGTT+GGG | 0.417723 | 4.4:+7180927 | MS.gene49776:CDS |
| GGTTGCTGAAGCTGAGAAAC+AGG | 0.419084 | 4.4:+7179570 | MS.gene49776:CDS |
| TAAGAGTTTGTTGTGGGTGG+CGG | 0.431253 | 4.4:-7179098 | None:intergenic |
| AGGGTTGGAGAGTTGTTCCC+TGG | 0.435316 | 4.4:+7180857 | MS.gene49776:CDS |
| ACAAACAACGGCACCTTCCT+TGG | 0.445026 | 4.4:-7179524 | None:intergenic |
| GTAAGCGGTGGCTTCGTCGC+TGG | 0.445724 | 4.4:+7179205 | MS.gene49776:CDS |
| TTACAGATGTTGAAAGATGA+AGG | 0.450243 | 4.4:+7179436 | MS.gene49776:CDS |
| AAATCACTCACCACAAACTT+TGG | 0.452354 | 4.4:-7180671 | None:intergenic |
| AAAGATGAAGGGCGACTTCA+GGG | 0.465610 | 4.4:+7179448 | MS.gene49776:CDS |
| CTGGGCCTTCCAAGGCAACC+AGG | 0.466683 | 4.4:+7180876 | MS.gene49776:CDS |
| TGATGTTAATAGAGTTCAAC+GGG | 0.468337 | 4.4:+7179375 | MS.gene49776:CDS |
| ACTATTTGTGATGCTGGTTG+TGG | 0.469095 | 4.4:+7179475 | MS.gene49776:CDS |
| GAAAGGGCGTTGCGCAAGGT+TGG | 0.471715 | 4.4:+7180926 | MS.gene49776:CDS |
| CTGGTTGCCTTGGAAGGCCC+AGG | 0.472074 | 4.4:-7180875 | None:intergenic |
| AGTGATTTAGAGAGTTTGGA+TGG | 0.476634 | 4.4:+7180686 | MS.gene49776:CDS |
| GGGAGTATTTCAACAACAAC+GGG | 0.479355 | 4.4:+7179317 | MS.gene49776:CDS |
| GTCGTCTTTCCGGGTCTGAA+AGG | 0.481970 | 4.4:-7179246 | None:intergenic |
| AAGAGTTTGTTGTGGGTGGC+GGG | 0.483942 | 4.4:-7179097 | None:intergenic |
| GGTTGTTAAGAGTTTGTTGT+GGG | 0.485748 | 4.4:-7179104 | None:intergenic |
| GTTCAACGGGATATTAGGTT+GGG | 0.491602 | 4.4:+7179388 | MS.gene49776:CDS |
| AGTTCAACGGGATATTAGGT+TGG | 0.497728 | 4.4:+7179387 | MS.gene49776:CDS |
| TTTATTATGATGCACTAAAG+AGG | 0.498288 | 4.4:+7180837 | MS.gene49776:CDS |
| TTACTTTGCCAAGCTTATTG+AGG | 0.499395 | 4.4:+7180988 | MS.gene49776:CDS |
| TTCTGAAGCAGATGTTGAAA+GGG | 0.501417 | 4.4:+7180910 | MS.gene49776:CDS |
| TCGTCTTTCCGGGTCTGAAA+GGG | 0.501629 | 4.4:-7179245 | None:intergenic |
| ACCACAAACTTTGGCATCGC+AGG | 0.503004 | 4.4:-7180662 | None:intergenic |
| AAGATATGCCCTGGTTGCCT+TGG | 0.503839 | 4.4:-7180885 | None:intergenic |
| TGGTTCTCTTTCGATTCCGT+TGG | 0.504285 | 4.4:+7179501 | MS.gene49776:CDS |
| ACGACGACGCGAACAGGCGG+AGG | 0.509203 | 4.4:+7179264 | MS.gene49776:CDS |
| TCGATTCCGTTGGCCAAGGA+AGG | 0.510765 | 4.4:+7179511 | MS.gene49776:CDS |
| ACCTGCGATGCCAAAGTTTG+TGG | 0.512251 | 4.4:+7180661 | MS.gene49776:CDS |
| GGTAACGTCGGCGGCTGTTG+CGG | 0.517328 | 4.4:-7179152 | None:intergenic |
| ATTCTGAAGCAGATGTTGAA+AGG | 0.518414 | 4.4:+7180909 | MS.gene49776:CDS |
| TATGCCCTGGTTGCCTTGGA+AGG | 0.522393 | 4.4:-7180881 | None:intergenic |
| ACTTCTCTCCCTTTCAGACC+CGG | 0.523310 | 4.4:+7179237 | MS.gene49776:CDS |
| TAAAGCGTTCTCAACAGTCT+TGG | 0.523882 | 4.4:-7179416 | None:intergenic |
| TATGATGCACTAAAGAGGGT+TGG | 0.524966 | 4.4:+7180842 | MS.gene49776:CDS |
| GTTGTTCCCTGGGCCTTCCA+AGG | 0.535217 | 4.4:+7180868 | MS.gene49776:CDS |
| GGGCGTTGCGCAAGGTTGGG+TGG | 0.537359 | 4.4:+7180930 | MS.gene49776:CDS |
| GTCTATGGCGCCGGTAACGT+CGG | 0.538591 | 4.4:-7179164 | None:intergenic |
| GCGGCTGTTGCGGTTGAGAG+TGG | 0.540172 | 4.4:-7179142 | None:intergenic |
| TTATTATGATGCACTAAAGA+GGG | 0.543982 | 4.4:+7180838 | MS.gene49776:CDS |
| GCTGTTGCGGTTGAGAGTGG+AGG | 0.545699 | 4.4:-7179139 | None:intergenic |
| CGCGAACAGGCGGAGGAAGT+AGG | 0.545859 | 4.4:+7179271 | MS.gene49776:CDS |
| TCCCATCTGCTTTACTCTGA+GGG | 0.551667 | 4.4:-7180751 | None:intergenic |
| TTTCTCAGCTTCAGCAACCA+TGG | 0.556058 | 4.4:-7179566 | None:intergenic |
| GGGTTGGAGAGTTGTTCCCT+GGG | 0.560240 | 4.4:+7180858 | MS.gene49776:CDS |
| AGGAACAGCCTCAATAAGCT+TGG | 0.560754 | 4.4:-7180996 | None:intergenic |
| TGTTGAAAGGGCGTTGCGCA+AGG | 0.560806 | 4.4:+7180922 | MS.gene49776:CDS |
| TCTTTCGATTCCGTTGGCCA+AGG | 0.564426 | 4.4:+7179507 | MS.gene49776:CDS |
| AAGACGACGACGCGAACAGG+CGG | 0.569936 | 4.4:+7179261 | MS.gene49776:CDS |
| TGGTTGCCTTGGAAGGCCCA+GGG | 0.570031 | 4.4:-7180874 | None:intergenic |
| TGTTGTGCCGTCTATGGCGC+CGG | 0.571715 | 4.4:-7179173 | None:intergenic |
| TGGGCCTTCCAAGGCAACCA+GGG | 0.571898 | 4.4:+7180877 | MS.gene49776:CDS |
| TGGTTGTTAAGAGTTTGTTG+TGG | 0.572241 | 4.4:-7179105 | None:intergenic |
| GACGTTACCGGCGCCATAGA+CGG | 0.574011 | 4.4:+7179166 | MS.gene49776:CDS |
| ACAACAACGGGTTTCAACGA+TGG | 0.574622 | 4.4:+7179329 | MS.gene49776:CDS |
| TGTTAAGAGTTTGTTGTGGG+TGG | 0.574727 | 4.4:-7179101 | None:intergenic |
| GAGTGGAGGGATGGCGAATG+TGG | 0.575620 | 4.4:-7179125 | None:intergenic |
| AGGGAGAGAATGTAGCGAAA+CGG | 0.590209 | 4.4:-7179069 | None:intergenic |
| GACGAAGCCACCGCTTACGA+CGG | 0.590883 | 4.4:-7179200 | None:intergenic |
| TACCCTCAGAGTAAAGCAGA+TGG | 0.593009 | 4.4:+7180749 | MS.gene49776:CDS |
| ATCCCATCTGCTTTACTCTG+AGG | 0.595461 | 4.4:-7180752 | None:intergenic |
| TACAGATGTTGAAAGATGAA+GGG | 0.602628 | 4.4:+7179437 | MS.gene49776:CDS |
| CTGTTGCGGTTGAGAGTGGA+GGG | 0.608229 | 4.4:-7179138 | None:intergenic |
| ACGGCACCTTCCTTGGCCAA+CGG | 0.611174 | 4.4:-7179517 | None:intergenic |
| GGGTGGACGATAAAGAAGAA+AGG | 0.614466 | 4.4:+7180947 | MS.gene49776:CDS |
| TATGGCGCCGGTAACGTCGG+CGG | 0.621518 | 4.4:-7179161 | None:intergenic |
| TAGTGATATATCAGCTGCCA+TGG | 0.622099 | 4.4:+7179549 | MS.gene49776:CDS |
| ACAACAATCGCCGTCGTAAG+CGG | 0.623303 | 4.4:+7179190 | MS.gene49776:CDS |
| AGGGAGTATTTCAACAACAA+CGG | 0.626963 | 4.4:+7179316 | MS.gene49776:CDS |
| ACCCTCAGAGTAAAGCAGAT+GGG | 0.629699 | 4.4:+7180750 | MS.gene49776:CDS |
| GTGATGACAAAGAAGTTGTG+AGG | 0.636702 | 4.4:+7179296 | MS.gene49776:CDS |
| TGCGGTTGAGAGTGGAGGGA+TGG | 0.637524 | 4.4:-7179134 | None:intergenic |
| AACAAAGAGAGAAGACCACA+TGG | 0.638571 | 4.4:-7179026 | None:intergenic |
| ATGATGTTAATAGAGTTCAA+CGG | 0.639280 | 4.4:+7179374 | MS.gene49776:CDS |
| TTCAGAATGAAGATATGCCC+TGG | 0.639551 | 4.4:-7180894 | None:intergenic |
| TGATGACAAAGAAGTTGTGA+GGG | 0.644653 | 4.4:+7179297 | MS.gene49776:CDS |
| ATCCTCTGGACTCACTACAT+AGG | 0.659752 | 4.4:-7181016 | None:intergenic |
| ACAATCGCCGTCGTAAGCGG+TGG | 0.659960 | 4.4:+7179193 | MS.gene49776:CDS |
| GTCTGAAAGGGAGAGAAGTG+CGG | 0.675558 | 4.4:-7179233 | None:intergenic |
| GGATGGATTGTACGATACAG+TGG | 0.678861 | 4.4:+7180703 | MS.gene49776:CDS |
| GAACAGGCGGAGGAAGTAGG+CGG | 0.681114 | 4.4:+7179274 | MS.gene49776:CDS |
| TATATCACTAGCACAAACAA+CGG | 0.690655 | 4.4:-7179536 | None:intergenic |
| TGGCGTTCTCATCATCCATG+TGG | 0.707884 | 4.4:+7179011 | MS.gene49776:CDS |
| AAAGGGAGAGAAGTGCGGTG+AGG | 0.719705 | 4.4:-7179228 | None:intergenic |
| GGTAATGAATCATAACATCG+AGG | 0.752533 | 4.4:-7180730 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAACATAAATATCAA+AGG | - | chr4.4:7179610-7179629 | None:intergenic | 15.0% |
| !! | TTATATAAATAGGAAGATTA+TGG | + | chr4.4:7180054-7180073 | MS.gene49776:intron | 15.0% |
| !! | AGAGAAGGATTTATATAAAT+AGG | + | chr4.4:7180044-7180063 | MS.gene49776:intron | 20.0% |
| !! | GACAATAATAATGTAATCAT+TGG | + | chr4.4:7180430-7180449 | MS.gene49776:intron | 20.0% |
| !!! | ATTTTATCCTATCTAAGTTT+TGG | - | chr4.4:7179719-7179738 | None:intergenic | 20.0% |
| ! | ACGATATTCAATTTAGTACA+CGG | - | chr4.4:7179785-7179804 | None:intergenic | 25.0% |
| ! | ATGATGTTAATAGAGTTCAA+CGG | + | chr4.4:7179374-7179393 | MS.gene49776:CDS | 25.0% |
| ! | CAATTGATGTTTGTAAACAT+CGG | - | chr4.4:7179940-7179959 | None:intergenic | 25.0% |
| ! | GCATCATAATAAAATGTCTT+AGG | - | chr4.4:7180830-7180849 | None:intergenic | 25.0% |
| ! | TTATTATGATGCACTAAAGA+GGG | + | chr4.4:7180838-7180857 | MS.gene49776:CDS | 25.0% |
| ! | TTATTGTCAGACATTGTAAA+AGG | - | chr4.4:7180418-7180437 | None:intergenic | 25.0% |
| ! | TTTATTATGATGCACTAAAG+AGG | + | chr4.4:7180837-7180856 | MS.gene49776:CDS | 25.0% |
| !! | CGTGAATATCATTTTGTAAA+CGG | - | chr4.4:7179913-7179932 | None:intergenic | 25.0% |
| !! | TTTAGACAATTTGAAATACC+CGG | - | chr4.4:7180513-7180532 | None:intergenic | 25.0% |
| !!! | AGTCGCAACTTTTTTTTTTA+GGG | - | chr4.4:7180140-7180159 | None:intergenic | 25.0% |
| !!! | GTTTTGAATGAATTTGACTT+TGG | - | chr4.4:7180537-7180556 | None:intergenic | 25.0% |
| !!! | TATGTTGTTTTTGTTAGAGA+AGG | + | chr4.4:7180029-7180048 | MS.gene49776:intron | 25.0% |
| !!! | TGCTTTGATAAAAAGTGTTT+TGG | - | chr4.4:7180282-7180301 | None:intergenic | 25.0% |
| !!! | TTGATAAAAAGTGTTTTGGT+AGG | - | chr4.4:7180278-7180297 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTAGGGGAATAG+AGG | - | chr4.4:7180131-7180150 | None:intergenic | 25.0% |
| ATCATGTTAGAGGTTAGAAT+AGG | + | chr4.4:7179990-7180009 | MS.gene49776:intron | 30.0% | |
| GTCATGGGTCAAATTTAATA+GGG | - | chr4.4:7180329-7180348 | None:intergenic | 30.0% | |
| TACAGATGTTGAAAGATGAA+GGG | + | chr4.4:7179437-7179456 | MS.gene49776:CDS | 30.0% | |
| TATATCACTAGCACAAACAA+CGG | - | chr4.4:7179539-7179558 | None:intergenic | 30.0% | |
| TCATGTTAGAGGTTAGAATA+GGG | + | chr4.4:7179991-7180010 | MS.gene49776:intron | 30.0% | |
| TGAATATCGTAGAACAATAG+CGG | + | chr4.4:7179795-7179814 | MS.gene49776:intron | 30.0% | |
| TGATGTTAATAGAGTTCAAC+GGG | + | chr4.4:7179375-7179394 | MS.gene49776:CDS | 30.0% | |
| TTACAGATGTTGAAAGATGA+AGG | + | chr4.4:7179436-7179455 | MS.gene49776:CDS | 30.0% | |
| TTCAAACACACAAACTAACA+CGG | + | chr4.4:7180577-7180596 | MS.gene49776:intron | 30.0% | |
| TTCTGTTCCATTCAATTCTT+AGG | + | chr4.4:7180232-7180251 | MS.gene49776:intron | 30.0% | |
| ! | ATTGACTCCAAAACTTAGAT+AGG | + | chr4.4:7179709-7179728 | MS.gene49776:intron | 30.0% |
| !!! | GAGTCGCAACTTTTTTTTTT+AGG | - | chr4.4:7180141-7180160 | None:intergenic | 30.0% |
| !!! | GTCGCAACTTTTTTTTTTAG+GGG | - | chr4.4:7180139-7180158 | None:intergenic | 30.0% |
| AAATCACTCACCACAAACTT+TGG | - | chr4.4:7180674-7180693 | None:intergenic | 35.0% | |
| AACCTCTAACATGATGTGTT+AGG | - | chr4.4:7179985-7180004 | None:intergenic | 35.0% | |
| AGTGATTTAGAGAGTTTGGA+TGG | + | chr4.4:7180686-7180705 | MS.gene49776:CDS | 35.0% | |
| ATAGAGTTCAACGGGATATT+AGG | + | chr4.4:7179383-7179402 | MS.gene49776:CDS | 35.0% | |
| ATGAGAGAATCTCTCCTTAA+AGG | - | chr4.4:7180180-7180199 | None:intergenic | 35.0% | |
| ATTAAATTTGACCCATGACC+AGG | + | chr4.4:7180330-7180349 | MS.gene49776:intron | 35.0% | |
| CAACGATGGAAGAAGATTTA+CGG | + | chr4.4:7179343-7179362 | MS.gene49776:CDS | 35.0% | |
| GGTAATGAATCATAACATCG+AGG | - | chr4.4:7180733-7180752 | None:intergenic | 35.0% | |
| GGTCATGGGTCAAATTTAAT+AGG | - | chr4.4:7180330-7180349 | None:intergenic | 35.0% | |
| TGATGACAAAGAAGTTGTGA+GGG | + | chr4.4:7179297-7179316 | MS.gene49776:CDS | 35.0% | |
| TGTCAGACATTGTAAAAGGA+GGG | - | chr4.4:7180414-7180433 | None:intergenic | 35.0% | |
| TTAAATTTGACCCATGACCA+GGG | + | chr4.4:7180331-7180350 | MS.gene49776:intron | 35.0% | |
| TTACTTTGCCAAGCTTATTG+AGG | + | chr4.4:7180988-7181007 | MS.gene49776:CDS | 35.0% | |
| TTAGGGACCTAAGAATTGAA+TGG | - | chr4.4:7180242-7180261 | None:intergenic | 35.0% | |
| TTCCTAACACATCATGTTAG+AGG | + | chr4.4:7179980-7179999 | MS.gene49776:intron | 35.0% | |
| TTGTCAGACATTGTAAAAGG+AGG | - | chr4.4:7180415-7180434 | None:intergenic | 35.0% | |
| TTGTGAAAGGGAAACCTTTA+AGG | + | chr4.4:7180163-7180182 | MS.gene49776:intron | 35.0% | |
| ! | AAGTGTGTTTTTCACTTTGC+AGG | + | chr4.4:7180601-7180620 | MS.gene49776:intron | 35.0% |
| ! | TGTGTTAGGAAGCACAATTA+CGG | - | chr4.4:7179971-7179990 | None:intergenic | 35.0% |
| !! | AGGGAGTATTTCAACAACAA+CGG | + | chr4.4:7179316-7179335 | MS.gene49776:CDS | 35.0% |
| !! | ATTCTGAAGCAGATGTTGAA+AGG | + | chr4.4:7180909-7180928 | MS.gene49776:CDS | 35.0% |
| !! | GGTTGTTAAGAGTTTGTTGT+GGG | - | chr4.4:7179107-7179126 | None:intergenic | 35.0% |
| !! | TGGTTGTTAAGAGTTTGTTG+TGG | - | chr4.4:7179108-7179127 | None:intergenic | 35.0% |
| !! | TTCTGAAGCAGATGTTGAAA+GGG | + | chr4.4:7180910-7180929 | MS.gene49776:CDS | 35.0% |
| !!! | CAACTCATTTTGAAGTGGAA+GGG | + | chr4.4:7179867-7179886 | MS.gene49776:intron | 35.0% |
| !!! | CGAAACGGTTAGTTTTGTTT+GGG | - | chr4.4:7179057-7179076 | None:intergenic | 35.0% |
| AACAAAGAGAGAAGACCACA+TGG | - | chr4.4:7179029-7179048 | None:intergenic | 40.0% | |
| AGTTCAACGGGATATTAGGT+TGG | + | chr4.4:7179387-7179406 | MS.gene49776:CDS | 40.0% | |
| AGTTGCGACTCTATTGTGAA+AGG | + | chr4.4:7180150-7180169 | MS.gene49776:intron | 40.0% | |
| CCAGACAAATTTGGTCTCTA+AGG | - | chr4.4:7180362-7180381 | None:intergenic | 40.0% | |
| CCTTAGAGACCAAATTTGTC+TGG | + | chr4.4:7180359-7180378 | MS.gene49776:intron | 40.0% | |
| CCTTTCAGGATCAGAACTAA+GGG | - | chr4.4:7180469-7180488 | None:intergenic | 40.0% | |
| CTACTTGTGTCCAGTGAAAA+TGG | + | chr4.4:7180632-7180651 | MS.gene49776:CDS | 40.0% | |
| CTTTCAGGATCAGAACTAAG+GGG | - | chr4.4:7180468-7180487 | None:intergenic | 40.0% | |
| GAACACACACCAGACAAATT+TGG | - | chr4.4:7180371-7180390 | None:intergenic | 40.0% | |
| GGTGAGTGATTTAGAGAGTT+TGG | + | chr4.4:7180682-7180701 | MS.gene49776:CDS | 40.0% | |
| GTCAGACATTGTAAAAGGAG+GGG | - | chr4.4:7180413-7180432 | None:intergenic | 40.0% | |
| GTGATGACAAAGAAGTTGTG+AGG | + | chr4.4:7179296-7179315 | MS.gene49776:CDS | 40.0% | |
| GTTCAACGGGATATTAGGTT+GGG | + | chr4.4:7179388-7179407 | MS.gene49776:CDS | 40.0% | |
| GTTGCGACTCTATTGTGAAA+GGG | + | chr4.4:7180151-7180170 | MS.gene49776:intron | 40.0% | |
| TAGTGATATATCAGCTGCCA+TGG | + | chr4.4:7179549-7179568 | MS.gene49776:CDS | 40.0% | |
| TATGATGCACTAAAGAGGGT+TGG | + | chr4.4:7180842-7180861 | MS.gene49776:CDS | 40.0% | |
| TTCAGAATGAAGATATGCCC+TGG | - | chr4.4:7180897-7180916 | None:intergenic | 40.0% | |
| ! | ACTATTTGTGATGCTGGTTG+TGG | + | chr4.4:7179475-7179494 | MS.gene49776:CDS | 40.0% |
| ! | TAAAGCGTTCTCAACAGTCT+TGG | - | chr4.4:7179419-7179438 | None:intergenic | 40.0% |
| !! | GCTTGCAACTCATTTTGAAG+TGG | + | chr4.4:7179862-7179881 | MS.gene49776:intron | 40.0% |
| !! | GGGAGTATTTCAACAACAAC+GGG | + | chr4.4:7179317-7179336 | MS.gene49776:CDS | 40.0% |
| !! | GGTGTTACTATTTGTGATGC+TGG | + | chr4.4:7179469-7179488 | MS.gene49776:CDS | 40.0% |
| !! | TGTTAAGAGTTTGTTGTGGG+TGG | - | chr4.4:7179104-7179123 | None:intergenic | 40.0% |
| !!! | CGGTTAGTTTTGTTTGGGTT+TGG | - | chr4.4:7179052-7179071 | None:intergenic | 40.0% |
| !!! | GCAACTCATTTTGAAGTGGA+AGG | + | chr4.4:7179866-7179885 | MS.gene49776:intron | 40.0% |
| !!! | GCGAAACGGTTAGTTTTGTT+TGG | - | chr4.4:7179058-7179077 | None:intergenic | 40.0% |
| AAAGATGAAGGGCGACTTCA+GGG | + | chr4.4:7179448-7179467 | MS.gene49776:CDS | 45.0% | |
| ACCCTCAGAGTAAAGCAGAT+GGG | + | chr4.4:7180750-7180769 | MS.gene49776:CDS | 45.0% | |
| AGGAACAGCCTCAATAAGCT+TGG | - | chr4.4:7180999-7181018 | None:intergenic | 45.0% | |
| AGGGAGAGAATGTAGCGAAA+CGG | - | chr4.4:7179072-7179091 | None:intergenic | 45.0% | |
| ATCCCATCTGCTTTACTCTG+AGG | - | chr4.4:7180755-7180774 | None:intergenic | 45.0% | |
| GATTGCTCACCTTGCTTCTT+TGG | + | chr4.4:7180775-7180794 | MS.gene49776:CDS | 45.0% | |
| GCCTTTCAGGATCAGAACTA+AGG | - | chr4.4:7180470-7180489 | None:intergenic | 45.0% | |
| GGAAGATTATGGAGTCAGAG+AGG | + | chr4.4:7180065-7180084 | MS.gene49776:intron | 45.0% | |
| GGGTGGACGATAAAGAAGAA+AGG | + | chr4.4:7180947-7180966 | MS.gene49776:CDS | 45.0% | |
| GGTGTGTGTTCTGTCAACTA+AGG | + | chr4.4:7180380-7180399 | MS.gene49776:intron | 45.0% | |
| TAAGGTTTCACCCTGGTCAT+GGG | - | chr4.4:7180344-7180363 | None:intergenic | 45.0% | |
| TACCCTCAGAGTAAAGCAGA+TGG | + | chr4.4:7180749-7180768 | MS.gene49776:CDS | 45.0% | |
| TAGGCACGAATGGCATGTTA+GGG | - | chr4.4:7180259-7180278 | None:intergenic | 45.0% | |
| TCCCATCTGCTTTACTCTGA+GGG | - | chr4.4:7180754-7180773 | None:intergenic | 45.0% | |
| TGGTTCTCTTTCGATTCCGT+TGG | + | chr4.4:7179501-7179520 | MS.gene49776:CDS | 45.0% | |
| TTTCTCAGCTTCAGCAACCA+TGG | - | chr4.4:7179569-7179588 | None:intergenic | 45.0% | |
| ! | ACAACAACGGGTTTCAACGA+TGG | + | chr4.4:7179329-7179348 | MS.gene49776:CDS | 45.0% |
| ! | AGGTGACACTCCATTTTCAC+TGG | - | chr4.4:7180645-7180664 | None:intergenic | 45.0% |
| ! | GCTTTTCTGCCAAAGAAGCA+AGG | - | chr4.4:7180787-7180806 | None:intergenic | 45.0% |
| !! | CCCTTAGTTCTGATCCTGAA+AGG | + | chr4.4:7180466-7180485 | MS.gene49776:intron | 45.0% |
| !! | GGATGGATTGTACGATACAG+TGG | + | chr4.4:7180703-7180722 | MS.gene49776:CDS | 45.0% |
| !! | TAAGAGTTTGTTGTGGGTGG+CGG | - | chr4.4:7179101-7179120 | None:intergenic | 45.0% |
| !!! | AGTGTTTTGGTAGGCACGAA+TGG | - | chr4.4:7180269-7180288 | None:intergenic | 45.0% |
| AAGATATGCCCTGGTTGCCT+TGG | - | chr4.4:7180888-7180907 | None:intergenic | 50.0% | |
| ACAAACAACGGCACCTTCCT+TGG | - | chr4.4:7179527-7179546 | None:intergenic | 50.0% | |
| ACAACAATCGCCGTCGTAAG+CGG | + | chr4.4:7179190-7179209 | MS.gene49776:CDS | 50.0% | |
| ACCACAAACTTTGGCATCGC+AGG | - | chr4.4:7180665-7180684 | None:intergenic | 50.0% | |
| ACCTGCGATGCCAAAGTTTG+TGG | + | chr4.4:7180661-7180680 | MS.gene49776:CDS | 50.0% | |
| ACTTCTCTCCCTTTCAGACC+CGG | + | chr4.4:7179237-7179256 | MS.gene49776:CDS | 50.0% | |
| CTAAGGTTTCACCCTGGTCA+TGG | - | chr4.4:7180345-7180364 | None:intergenic | 50.0% | |
| GAAAGATGAAGGGCGACTTC+AGG | + | chr4.4:7179447-7179466 | MS.gene49776:CDS | 50.0% | |
| GGTTGCTGAAGCTGAGAAAC+AGG | + | chr4.4:7179570-7179589 | MS.gene49776:CDS | 50.0% | |
| GTAGGCACGAATGGCATGTT+AGG | - | chr4.4:7180260-7180279 | None:intergenic | 50.0% | |
| GTCTGAAAGGGAGAGAAGTG+CGG | - | chr4.4:7179236-7179255 | None:intergenic | 50.0% | |
| TCGTCTTTCCGGGTCTGAAA+GGG | - | chr4.4:7179248-7179267 | None:intergenic | 50.0% | |
| TCTTTCGATTCCGTTGGCCA+AGG | + | chr4.4:7179507-7179526 | MS.gene49776:CDS | 50.0% | |
| TGGCGTTCTCATCATCCATG+TGG | + | chr4.4:7179011-7179030 | MS.gene49776:CDS | 50.0% | |
| ! | TGTGATGCTGGTTGTGGTAC+TGG | + | chr4.4:7179481-7179500 | MS.gene49776:CDS | 50.0% |
| !! | AAGAGTTTGTTGTGGGTGGC+GGG | - | chr4.4:7179100-7179119 | None:intergenic | 50.0% |
| !! | TGGTCTCTAAGGTTTCACCC+TGG | - | chr4.4:7180351-7180370 | None:intergenic | 50.0% |
| AAATACCCGGATCTTGCGCC+GGG | - | chr4.4:7180500-7180519 | None:intergenic | 55.0% | |
| AGGGTTGGAGAGTTGTTCCC+TGG | + | chr4.4:7180857-7180876 | MS.gene49776:CDS | 55.0% | |
| CTGTTGCGGTTGAGAGTGGA+GGG | - | chr4.4:7179141-7179160 | None:intergenic | 55.0% | |
| GAAATACCCGGATCTTGCGC+CGG | - | chr4.4:7180501-7180520 | None:intergenic | 55.0% | |
| GGCGATTGTTGTGCCGTCTA+TGG | - | chr4.4:7179182-7179201 | None:intergenic | 55.0% | |
| GGGTTGGAGAGTTGTTCCCT+GGG | + | chr4.4:7180858-7180877 | MS.gene49776:CDS | 55.0% | |
| GTCGTCTTTCCGGGTCTGAA+AGG | - | chr4.4:7179249-7179268 | None:intergenic | 55.0% | |
| TATGCCCTGGTTGCCTTGGA+AGG | - | chr4.4:7180884-7180903 | None:intergenic | 55.0% | |
| TCCTGAAAGGCGAAAGAGCC+CGG | + | chr4.4:7180479-7180498 | MS.gene49776:intron | 55.0% | |
| TCGATTCCGTTGGCCAAGGA+AGG | + | chr4.4:7179511-7179530 | MS.gene49776:CDS | 55.0% | |
| TGTTCGCGTCGTCGTCTTTC+CGG | - | chr4.4:7179259-7179278 | None:intergenic | 55.0% | |
| ! | AAAGGGAGAGAAGTGCGGTG+AGG | - | chr4.4:7179231-7179250 | None:intergenic | 55.0% |
| !! | AAAGGGCGTTGCGCAAGGTT+GGG | + | chr4.4:7180927-7180946 | MS.gene49776:CDS | 55.0% |
| !! | TGTTGAAAGGGCGTTGCGCA+AGG | + | chr4.4:7180922-7180941 | MS.gene49776:CDS | 55.0% |
| AAAGAGCCCGGCGCAAGATC+CGG | + | chr4.4:7180491-7180510 | MS.gene49776:intron | 60.0% | |
| AAGACGACGACGCGAACAGG+CGG | + | chr4.4:7179261-7179280 | MS.gene49776:CDS | 60.0% | |
| ACAATCGCCGTCGTAAGCGG+TGG | + | chr4.4:7179193-7179212 | MS.gene49776:CDS | 60.0% | |
| ACGGCACCTTCCTTGGCCAA+CGG | - | chr4.4:7179520-7179539 | None:intergenic | 60.0% | |
| GAACAGGCGGAGGAAGTAGG+CGG | + | chr4.4:7179274-7179293 | MS.gene49776:CDS | 60.0% | |
| GACGAAGCCACCGCTTACGA+CGG | - | chr4.4:7179203-7179222 | None:intergenic | 60.0% | |
| GACGTTACCGGCGCCATAGA+CGG | + | chr4.4:7179166-7179185 | MS.gene49776:CDS | 60.0% | |
| GAGTGGAGGGATGGCGAATG+TGG | - | chr4.4:7179128-7179147 | None:intergenic | 60.0% | |
| GCTGTTGCGGTTGAGAGTGG+AGG | - | chr4.4:7179142-7179161 | None:intergenic | 60.0% | |
| GGAAAGACGACGACGCGAAC+AGG | + | chr4.4:7179258-7179277 | MS.gene49776:CDS | 60.0% | |
| GTTCGCGTCGTCGTCTTTCC+GGG | - | chr4.4:7179258-7179277 | None:intergenic | 60.0% | |
| GTTGTTCCCTGGGCCTTCCA+AGG | + | chr4.4:7180868-7180887 | MS.gene49776:CDS | 60.0% | |
| TGCGGTTGAGAGTGGAGGGA+TGG | - | chr4.4:7179137-7179156 | None:intergenic | 60.0% | |
| TGGGCCTTCCAAGGCAACCA+GGG | + | chr4.4:7180877-7180896 | MS.gene49776:CDS | 60.0% | |
| TGGTTGCCTTGGAAGGCCCA+GGG | - | chr4.4:7180877-7180896 | None:intergenic | 60.0% | |
| TGTTGTGCCGTCTATGGCGC+CGG | - | chr4.4:7179176-7179195 | None:intergenic | 60.0% | |
| !! | GAAAGGGCGTTGCGCAAGGT+TGG | + | chr4.4:7180926-7180945 | MS.gene49776:CDS | 60.0% |
| !! | GTCTATGGCGCCGGTAACGT+CGG | - | chr4.4:7179167-7179186 | None:intergenic | 60.0% |
| !! | TTTGTTGTGGGTGGCGGGAG+AGG | - | chr4.4:7179095-7179114 | None:intergenic | 60.0% |
| AAGAGCCCGGCGCAAGATCC+GGG | + | chr4.4:7180492-7180511 | MS.gene49776:intron | 65.0% | |
| CGCGAACAGGCGGAGGAAGT+AGG | + | chr4.4:7179271-7179290 | MS.gene49776:CDS | 65.0% | |
| CTGGGCCTTCCAAGGCAACC+AGG | + | chr4.4:7180876-7180895 | MS.gene49776:CDS | 65.0% | |
| CTGGTTGCCTTGGAAGGCCC+AGG | - | chr4.4:7180878-7180897 | None:intergenic | 65.0% | |
| GCAACAGCCGCCGACGTTAC+CGG | + | chr4.4:7179154-7179173 | MS.gene49776:CDS | 65.0% | |
| GCCGGGCTCTTTCGCCTTTC+AGG | - | chr4.4:7180483-7180502 | None:intergenic | 65.0% | |
| GCGGCTGTTGCGGTTGAGAG+TGG | - | chr4.4:7179145-7179164 | None:intergenic | 65.0% | |
| GGTAACGTCGGCGGCTGTTG+CGG | - | chr4.4:7179155-7179174 | None:intergenic | 65.0% | |
| GTAAGCGGTGGCTTCGTCGC+TGG | + | chr4.4:7179205-7179224 | MS.gene49776:CDS | 65.0% | |
| !! | TATGGCGCCGGTAACGTCGG+CGG | - | chr4.4:7179164-7179183 | None:intergenic | 65.0% |
| !! | TTGTGGGTGGCGGGAGAGGA+GGG | - | chr4.4:7179091-7179110 | None:intergenic | 65.0% |
| ACGACGACGCGAACAGGCGG+AGG | + | chr4.4:7179264-7179283 | MS.gene49776:CDS | 70.0% | |
| ! | GGGCGTTGCGCAAGGTTGGG+TGG | + | chr4.4:7180930-7180949 | MS.gene49776:CDS | 70.0% |
| !! | GTTGTGGGTGGCGGGAGAGG+AGG | - | chr4.4:7179092-7179111 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 7179010 | 7181024 | 7179010 | ID=MS.gene49776 |
| chr4.4 | mRNA | 7179010 | 7181024 | 7179010 | ID=MS.gene49776.t1;Parent=MS.gene49776 |
| chr4.4 | exon | 7179010 | 7179591 | 7179010 | ID=MS.gene49776.t1.exon1;Parent=MS.gene49776.t1 |
| chr4.4 | CDS | 7179010 | 7179591 | 7179010 | ID=cds.MS.gene49776.t1;Parent=MS.gene49776.t1 |
| chr4.4 | exon | 7180623 | 7181024 | 7180623 | ID=MS.gene49776.t1.exon2;Parent=MS.gene49776.t1 |
| chr4.4 | CDS | 7180623 | 7181024 | 7180623 | ID=cds.MS.gene49776.t1;Parent=MS.gene49776.t1 |
| Gene Sequence |
| Protein sequence |
