AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026847.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026847.01.T01 MTR_2g426060 65.359 306 68 4 1 271 95 397 1.28e-130 376
MsG0580026847.01.T01 MTR_2g426020 63.208 318 66 6 1 277 96 403 5.76e-130 374
MsG0580026847.01.T01 MTR_2g425980 64.401 309 73 4 2 275 95 401 7.93e-130 374
MsG0580026847.01.T01 MTR_2g426070 62.987 308 71 5 1 273 101 400 6.02e-127 367
MsG0580026847.01.T01 MTR_2g426090 62.662 308 72 5 1 272 96 396 1.69e-124 361
MsG0580026847.01.T01 MTR_2g025420 59.807 311 81 5 3 271 104 412 3.06e-119 348
MsG0580026847.01.T01 MTR_2g028130 60.063 318 75 8 1 275 102 410 5.80e-116 339
MsG0580026847.01.T01 MTR_2g025960 59.048 315 77 6 1 271 1 307 9.95e-115 332
MsG0580026847.01.T01 MTR_2g028140 59.740 308 83 6 1 271 103 406 4.55e-112 330
MsG0580026847.01.T01 MTR_3g083010 58.307 319 81 8 1 273 104 416 5.63e-111 327
MsG0580026847.01.T01 MTR_2g028110 58.842 311 76 7 1 275 86 380 3.95e-110 323
MsG0580026847.01.T01 MTR_0667s0010 56.550 313 89 5 1 271 90 397 8.45e-110 323
MsG0580026847.01.T01 MTR_2g024100 58.333 312 84 4 1 269 92 400 4.64e-109 322
MsG0580026847.01.T01 MTR_2g021050 55.031 318 73 6 1 274 91 382 9.40e-103 305
MsG0580026847.01.T01 MTR_2g031640 54.839 310 88 6 1 273 88 382 6.43e-102 303
MsG0580026847.01.T01 MTR_2g031720 54.839 310 84 7 1 271 92 384 3.69e-101 301
MsG0580026847.01.T01 MTR_8g099460 55.627 311 90 6 1 271 89 391 1.38e-98 295
MsG0580026847.01.T01 MTR_4g070550 54.754 305 96 7 1 267 97 397 5.47e-98 293
MsG0580026847.01.T01 MTR_2g028160 52.516 318 99 7 1 273 102 412 2.23e-96 290
MsG0580026847.01.T01 MTR_1g068835 53.571 308 87 8 1 273 87 373 5.91e-95 285
MsG0580026847.01.T01 MTR_2g031680 52.614 306 95 5 1 271 87 377 4.68e-93 280
MsG0580026847.01.T01 MTR_1g068860 54.487 312 84 9 1 276 87 376 5.78e-92 277
MsG0580026847.01.T01 MTR_1g068875 53.571 308 86 8 1 273 87 372 1.89e-90 273
MsG0580026847.01.T01 MTR_2g026010 52.366 317 89 8 1 271 86 386 4.30e-89 270
MsG0580026847.01.T01 MTR_2g024110 46.535 303 95 9 3 259 91 372 1.55e-76 238
MsG0580026847.01.T01 MTR_4g006270 43.771 297 109 9 1 259 85 361 1.04e-67 216
MsG0580026847.01.T01 MTR_2g037520 66.879 157 38 2 90 238 1 151 8.19e-63 195
MsG0580026847.01.T01 MTR_1g068905 44.068 295 78 9 1 277 87 312 3.76e-59 191
MsG0580026847.01.T01 MTR_2g025440 66.923 130 34 2 148 269 2 130 1.41e-52 171
MsG0580026847.01.T01 MTR_4g133170 36.013 311 138 7 1 274 86 372 9.58e-52 174
MsG0580026847.01.T01 MTR_3g086960 50.649 154 55 5 114 255 10 154 3.48e-36 127
MsG0580026847.01.T01 MTR_7g110360 64.000 100 27 1 163 253 221 320 2.06e-34 127
MsG0580026847.01.T01 MTR_7g110360 42.697 89 39 2 1 86 125 204 9.32e-11 61.6
MsG0580026847.01.T01 MTR_2g040050 36.441 236 70 9 1 196 38 233 1.62e-32 120
MsG0580026847.01.T01 MTR_2g031700 41.615 161 46 3 1 127 87 233 7.95e-28 108
MsG0580026847.01.T01 MTR_2g031700 70.000 60 17 1 216 275 235 293 7.83e-18 81.6
MsG0580026847.01.T01 MTR_5g083940 33.459 266 89 8 1 233 64 274 2.26e-27 108
MsG0580026847.01.T01 MTR_7g110370 53.846 104 43 2 119 222 8 106 8.92e-25 99.4
MsG0580026847.01.T01 MTR_3g014570 27.817 284 147 11 3 252 121 380 2.72e-22 95.5
MsG0580026847.01.T01 MTR_2g028120 57.746 71 29 1 202 271 8 78 8.25e-20 82.0
MsG0580026847.01.T01 MTR_3g006670 28.378 222 93 8 3 187 144 336 2.20e-19 87.4
MsG0580026847.01.T01 MTR_2g021150 26.552 290 141 9 2 251 112 369 4.99e-19 86.3
MsG0580026847.01.T01 MTR_4g055060 28.283 297 137 13 2 253 124 389 1.10e-17 82.4
MsG0580026847.01.T01 MTR_3g009300 25.862 290 145 13 3 253 97 355 1.11e-17 82.0
MsG0580026847.01.T01 MTR_6g021880 25.862 290 148 11 3 251 119 382 3.08e-17 81.3
MsG0580026847.01.T01 MTR_3g013770 26.351 296 134 14 3 252 132 389 5.91e-17 80.5
MsG0580026847.01.T01 MTR_3g024130 23.368 291 150 9 2 251 57 315 6.82e-17 79.3
MsG0580026847.01.T01 MTR_3g014540 26.855 283 150 13 3 252 121 379 8.38e-17 79.7
MsG0580026847.01.T01 MTR_2g046900 25.503 298 144 11 2 253 122 387 1.55e-16 79.0
MsG0580026847.01.T01 MTR_5g057710 26.596 282 146 12 4 251 141 395 3.48e-16 78.2
MsG0580026847.01.T01 MTR_3g013740 24.490 294 144 12 3 251 147 407 9.97e-16 77.0
MsG0580026847.01.T01 MTR_3g010390 25.597 293 146 9 3 251 134 398 1.50e-15 76.3
MsG0580026847.01.T01 MTR_3g007330 26.577 222 97 8 3 187 135 327 1.72e-15 76.3
MsG0580026847.01.T01 MTR_0044s0300 25.352 284 147 14 4 251 136 390 3.21e-15 75.5
MsG0580026847.01.T01 MTR_3g036290 26.241 282 138 12 3 253 117 359 3.96e-15 74.7
MsG0580026847.01.T01 MTR_8g064790 25.105 239 148 8 16 250 121 332 8.88e-15 73.6
MsG0580026847.01.T01 MTR_3g009310 26.460 291 135 16 3 251 138 391 2.71e-14 72.4
MsG0580026847.01.T01 MTR_7g407070 25.503 298 144 13 2 251 132 399 6.48e-14 71.6
MsG0580026847.01.T01 MTR_3g436150 26.941 219 101 6 6 187 135 331 7.19e-14 71.2
MsG0580026847.01.T01 MTR_5g011200 25.346 217 104 8 3 187 115 305 1.04e-13 70.9
MsG0580026847.01.T01 MTR_4g117870 27.715 267 140 14 1 256 39 263 3.16e-13 68.6
MsG0580026847.01.T01 MTR_4g134560 26.337 243 114 10 3 208 171 385 3.51e-13 69.7
MsG0580026847.01.T01 MTR_1g055065 24.749 299 145 12 4 251 19 288 4.84e-13 68.2
MsG0580026847.01.T01 MTR_3g007300 29.082 196 104 9 3 187 131 302 6.88e-13 68.2
MsG0580026847.01.T01 MTR_3g030250 25.296 253 130 10 31 251 155 380 7.00e-13 68.6
MsG0580026847.01.T01 MTR_6g478230 24.719 267 143 13 4 229 130 379 7.18e-13 68.6
MsG0580026847.01.T01 MTR_3g036335 26.786 280 148 15 4 251 141 395 7.48e-13 68.2
MsG0580026847.01.T01 MTR_3g010440 26.217 267 124 9 3 251 121 332 9.80e-13 67.8
MsG0580026847.01.T01 MTR_4g132560 29.091 165 104 7 91 251 104 259 1.29e-12 66.6
MsG0580026847.01.T01 MTR_2g078900 26.693 251 139 13 6 238 133 356 1.35e-12 67.4
MsG0580026847.01.T01 MTR_3g009260 25.175 286 145 13 4 251 131 385 1.57e-12 67.4
MsG0580026847.01.T01 MTR_1g097490 27.622 286 134 14 3 251 142 391 1.93e-12 67.0
MsG0580026847.01.T01 MTR_7g023800 28.452 239 136 13 5 229 66 283 1.99e-12 66.6
MsG0580026847.01.T01 MTR_1g050312 26.360 239 128 9 16 230 54 268 2.57e-12 66.2
MsG0580026847.01.T01 MTR_2g046860 24.727 275 133 10 3 234 7 250 3.00e-12 66.2
MsG0580026847.01.T01 MTR_3g009240 23.973 292 143 14 4 251 127 383 5.82e-12 65.5
MsG0580026847.01.T01 MTR_2g078870 22.968 283 153 12 4 251 56 308 5.93e-12 65.1
MsG0580026847.01.T01 MTR_3g024150 26.255 259 126 13 31 251 155 386 6.11e-12 65.5
MsG0580026847.01.T01 MTR_4g118370 27.059 255 127 14 31 257 34 257 6.13e-12 64.7
MsG0580026847.01.T01 MTR_1g094210 24.528 212 102 7 3 187 152 332 7.25e-12 65.5
MsG0580026847.01.T01 MTR_5g056990 26.009 223 120 9 62 251 30 240 7.74e-12 64.3
MsG0580026847.01.T01 MTR_1g094210 24.528 212 102 7 3 187 152 332 7.87e-12 65.5
MsG0580026847.01.T01 MTR_4g030090 23.695 249 115 9 3 201 111 334 7.94e-12 65.5
MsG0580026847.01.T01 MTR_8g012090 26.866 201 116 9 5 187 113 300 1.28e-11 64.3
MsG0580026847.01.T01 MTR_1004s0010 25.182 274 136 12 16 253 122 362 1.36e-11 64.3
MsG0580026847.01.T01 MTR_3g030240 27.668 253 119 13 31 251 158 378 1.56e-11 64.3
MsG0580026847.01.T01 MTR_2g078850 25.843 267 117 14 4 232 128 351 1.75e-11 64.3
MsG0580026847.01.T01 MTR_0760s0010 25.547 274 135 13 16 253 152 392 2.00e-11 63.9
MsG0580026847.01.T01 MTR_3g030320 22.302 278 164 13 4 251 44 299 4.36e-11 62.8
MsG0580026847.01.T01 MTR_1g115160 23.810 273 169 10 3 251 110 367 4.48e-11 62.8
MsG0580026847.01.T01 MTR_3g023940 26.554 177 110 6 84 251 219 384 5.49e-11 62.8
MsG0580026847.01.T01 MTR_3g011020 27.320 194 114 7 3 187 130 305 6.01e-11 62.8
MsG0580026847.01.T01 MTR_3g030330 25.087 287 145 13 3 251 118 372 6.45e-11 62.4
MsG0580026847.01.T01 MTR_5g097850 28.144 167 101 8 92 250 85 240 7.11e-11 61.6
MsG0580026847.01.T01 MTR_4g061340 23.490 298 141 13 3 251 117 376 7.90e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026847.01.T01 AT4G12560 30.201 298 137 7 3 249 91 368 3.84e-34 128
MsG0580026847.01.T01 AT4G12560 30.201 298 137 7 3 249 91 368 3.84e-34 128
MsG0580026847.01.T01 AT4G12560 30.201 298 137 7 3 249 91 368 3.84e-34 128
MsG0580026847.01.T01 AT4G22390 25.632 277 134 6 3 230 91 344 1.82e-19 87.8
MsG0580026847.01.T01 AT4G22390 25.632 277 134 6 3 230 91 344 1.85e-19 87.8
MsG0580026847.01.T01 AT3G06240 25.436 287 151 9 1 252 163 421 3.86e-17 81.3

Find 58 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTCCTGATGATAATTT+TGG 0.048307 5:+46338885 MsG0580026847.01.T01:CDS
TTAAAATCTTCAAGGCTTAT+AGG 0.203872 5:+46338717 MsG0580026847.01.T01:CDS
CTGGATTATGACTCGGAAAA+TGG 0.265916 5:+46338428 MsG0580026847.01.T01:CDS
ATCATAGCTTGATGCAAATT+AGG 0.294176 5:-46338837 None:intergenic
CGCTTCTCCTTATGTGTTCA+CGG 0.297299 5:+46338211 MsG0580026847.01.T01:CDS
ATCTGTTTCACGCATCCTTA+TGG 0.315196 5:+46338082 MsG0580026847.01.T01:CDS
AATTAAATAAAGAGCTGTTT+TGG 0.323234 5:+46338772 MsG0580026847.01.T01:CDS
TCCTTATGTGTTCACGGCTT+CGG 0.326701 5:+46338217 MsG0580026847.01.T01:CDS
CTTCACCTTTAAAATCTTCA+AGG 0.349372 5:+46338709 MsG0580026847.01.T01:CDS
AAACTACTAAAATTGATGTT+TGG 0.356359 5:+46338619 MsG0580026847.01.T01:CDS
GTTTGGGTGATGAAAGAATA+TGG 0.365045 5:+46338636 MsG0580026847.01.T01:CDS
CATTGAAAATCTCAAGTGTT+AGG 0.366829 5:-46338485 None:intergenic
GGAATAGGAAGAGGTAGAAA+AGG 0.383823 5:-46338157 None:intergenic
TCGGAGGAGTTTATAATCTC+TGG 0.391159 5:-46338254 None:intergenic
AACTACTAAAATTGATGTTT+GGG 0.401477 5:+46338620 MsG0580026847.01.T01:CDS
TTGTTGAGAATTCTCTTCAC+TGG 0.404513 5:+46338409 MsG0580026847.01.T01:CDS
ATAAACTCCTCCGAATATCT+TGG 0.408973 5:+46338263 MsG0580026847.01.T01:CDS
GTGATTTCGTTGGCGCCATA+AGG 0.420362 5:-46338097 None:intergenic
AGTTTATAATCTCTGGATAA+AGG 0.420388 5:-46338247 None:intergenic
AAGGATGCGTGAAACAGATT+TGG 0.422401 5:-46338078 None:intergenic
AACACCTATATGGCTCTTAT+CGG 0.426155 5:+46338022 None:intergenic
CCTCTTCCTGCTGAAATAGA+AGG 0.430840 5:+46338513 MsG0580026847.01.T01:CDS
TTATTCTTGTGACGGAAGTA+AGG 0.452771 5:+46338740 MsG0580026847.01.T01:CDS
TCGAGCATGATGTTAGGAAT+AGG 0.455785 5:-46338172 None:intergenic
TCAGATTCGAGCATGATGTT+AGG 0.458036 5:-46338178 None:intergenic
GAGAGACTAACCAAGATATT+CGG 0.467213 5:-46338273 None:intergenic
GAATAGGAAGAGGTAGAAAA+GGG 0.467507 5:-46338156 None:intergenic
CTTAGCTTTGTTCCAACCGT+GGG 0.471422 5:+46338381 MsG0580026847.01.T01:intron
CTCTTCACTGGATTATGACT+CGG 0.472624 5:+46338421 MsG0580026847.01.T01:CDS
GGACAAGTTAGTTATGTTGA+AGG 0.473638 5:+46338810 MsG0580026847.01.T01:CDS
ACCGAAGCCGTGAACACATA+AGG 0.478330 5:-46338218 None:intergenic
TCCTTCCCAAAATTATCATC+AGG 0.481690 5:-46338891 None:intergenic
CCTTCTATTTCAGCAGGAAG+AGG 0.490143 5:-46338513 None:intergenic
TGACGGAAGTAAGGCTCTGT+TGG 0.497386 5:+46338749 MsG0580026847.01.T01:CDS
GTTCCAGATTGTGATTTCGT+TGG 0.498468 5:-46338107 None:intergenic
TCTTCACCTTCTATTTCAGC+AGG 0.505800 5:-46338519 None:intergenic
GCGCCAACGAAATCACAATC+TGG 0.517989 5:+46338104 MsG0580026847.01.T01:CDS
GAAGGTGAAGAGGTTAACAA+TGG 0.526838 5:+46338531 MsG0580026847.01.T01:CDS
ATGATGTTAGGAATAGGAAG+AGG 0.531411 5:-46338166 None:intergenic
GGCCTCATTGCTATCTCCAT+TGG 0.533009 5:+46338055 MsG0580026847.01.T01:CDS
GCTCTTATCGGTTCATGCAA+CGG 0.535891 5:+46338034 MsG0580026847.01.T01:CDS
CCCAAAATTATCATCAGGAA+AGG 0.539440 5:-46338886 None:intergenic
CTTATAGGTTATTCTTGTGA+CGG 0.546199 5:+46338732 MsG0580026847.01.T01:CDS
AAGGTGAAGAGGTTAACAAT+GGG 0.547467 5:+46338532 MsG0580026847.01.T01:CDS
CGTGAAACAGATTTGGCCAA+TGG 0.559767 5:-46338071 None:intergenic
TCTTAGCTTTGTTCCAACCG+TGG 0.569678 5:+46338380 MsG0580026847.01.T01:intron
AATATGGTTCTAGAGATAGT+TGG 0.584921 5:+46338652 MsG0580026847.01.T01:CDS
TGCTGAAATAGAAGGTGAAG+AGG 0.586302 5:+46338521 MsG0580026847.01.T01:CDS
AAATTATCATCAGGAAAGGA+AGG 0.598307 5:-46338882 None:intergenic
TTAGCTTTGTTCCAACCGTG+GGG 0.610084 5:+46338382 MsG0580026847.01.T01:intron
ATACGATGTTTACGAGTGTG+AGG 0.621734 5:-46338130 None:intergenic
TACGATGTTTACGAGTGTGA+GGG 0.622269 5:-46338129 None:intergenic
TAGCTTTGTTCCAACCGTGG+GGG 0.638572 5:+46338383 MsG0580026847.01.T01:intron
GTACAAGCAAGAGCAAGAGA+AGG 0.658263 5:+46338922 MsG0580026847.01.T01:CDS
TAAACGCAACAATGAAACAA+AGG 0.659209 5:-46338461 None:intergenic
TTATCATCAGGAAAGGAAGG+TGG 0.663582 5:-46338879 None:intergenic
AGACTAACCAAGATATTCGG+AGG 0.666454 5:-46338270 None:intergenic
GGCCAATGGAGATAGCAATG+AGG 0.730070 5:-46338057 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTACTAAAATTGATGTT+TGG + Chr5:46338619-46338638 MsG0580026847.01.T01:CDS 20.0%
!! AACTACTAAAATTGATGTTT+GGG + Chr5:46338620-46338639 MsG0580026847.01.T01:CDS 20.0%
!!! AATTAAATAAAGAGCTGTTT+TGG + Chr5:46338772-46338791 MsG0580026847.01.T01:CDS 20.0%
!!! GAATCATAAAAAAAGTTTTG+TGG - Chr5:46338298-46338317 None:intergenic 20.0%
! AGTTTATAATCTCTGGATAA+AGG - Chr5:46338250-46338269 None:intergenic 25.0%
! TTAAAATCTTCAAGGCTTAT+AGG + Chr5:46338717-46338736 MsG0580026847.01.T01:CDS 25.0%
!! ATAAGCCTTGAAGATTTTAA+AGG - Chr5:46338717-46338736 None:intergenic 25.0%
!! TTGGTGTAAACTTTTTACTT+TGG + Chr5:46338671-46338690 MsG0580026847.01.T01:CDS 25.0%
AAATTATCATCAGGAAAGGA+AGG - Chr5:46338885-46338904 None:intergenic 30.0%
ATCATAGCTTGATGCAAATT+AGG - Chr5:46338840-46338859 None:intergenic 30.0%
CATTGAAAATCTCAAGTGTT+AGG - Chr5:46338488-46338507 None:intergenic 30.0%
CTTATAGGTTATTCTTGTGA+CGG + Chr5:46338732-46338751 MsG0580026847.01.T01:CDS 30.0%
TAAACGCAACAATGAAACAA+AGG - Chr5:46338464-46338483 None:intergenic 30.0%
! AACACTTGAGATTTTCAATG+TGG + Chr5:46338488-46338507 MsG0580026847.01.T01:CDS 30.0%
! CCTTTCCTGATGATAATTTT+GGG + Chr5:46338886-46338905 MsG0580026847.01.T01:CDS 30.0%
! TCCTTTCCTGATGATAATTT+TGG + Chr5:46338885-46338904 MsG0580026847.01.T01:CDS 30.0%
!! AATATGGTTCTAGAGATAGT+TGG + Chr5:46338652-46338671 MsG0580026847.01.T01:CDS 30.0%
!! CTTCACCTTTAAAATCTTCA+AGG + Chr5:46338709-46338728 MsG0580026847.01.T01:CDS 30.0%
!!! AAAAAATGCTGTTGCTGTTT+TGG + Chr5:46338566-46338585 MsG0580026847.01.T01:CDS 30.0%
!!! AAAAATGCTGTTGCTGTTTT+GGG + Chr5:46338567-46338586 MsG0580026847.01.T01:CDS 30.0%
!!! TTTTGGTTTGATTTGAAGAG+TGG + Chr5:46338789-46338808 MsG0580026847.01.T01:CDS 30.0%
AAGGTGAAGAGGTTAACAAT+GGG + Chr5:46338532-46338551 MsG0580026847.01.T01:CDS 35.0%
ATAAACTCCTCCGAATATCT+TGG + Chr5:46338263-46338282 MsG0580026847.01.T01:CDS 35.0%
ATGATGTTAGGAATAGGAAG+AGG - Chr5:46338169-46338188 None:intergenic 35.0%
CCCAAAATTATCATCAGGAA+AGG - Chr5:46338889-46338908 None:intergenic 35.0%
GAATAGGAAGAGGTAGAAAA+GGG - Chr5:46338159-46338178 None:intergenic 35.0%
GAGAGACTAACCAAGATATT+CGG - Chr5:46338276-46338295 None:intergenic 35.0%
GGACAAGTTAGTTATGTTGA+AGG + Chr5:46338810-46338829 MsG0580026847.01.T01:CDS 35.0%
GTTTGGGTGATGAAAGAATA+TGG + Chr5:46338636-46338655 MsG0580026847.01.T01:CDS 35.0%
TCCTTCCCAAAATTATCATC+AGG - Chr5:46338894-46338913 None:intergenic 35.0%
TTGTTGAGAATTCTCTTCAC+TGG + Chr5:46338409-46338428 MsG0580026847.01.T01:CDS 35.0%
! TTATTCTTGTGACGGAAGTA+AGG + Chr5:46338740-46338759 MsG0580026847.01.T01:CDS 35.0%
!! TCAGCTCTAAAACAAATTCG+TGG + Chr5:46338332-46338351 MsG0580026847.01.T01:intron 35.0%
!! TCCTGATGATAATTTTGGGA+AGG + Chr5:46338890-46338909 MsG0580026847.01.T01:CDS 35.0%
!! TGATGATAATTTTGGGAAGG+AGG + Chr5:46338893-46338912 MsG0580026847.01.T01:CDS 35.0%
AAGGATGCGTGAAACAGATT+TGG - Chr5:46338081-46338100 None:intergenic 40.0%
AGACTAACCAAGATATTCGG+AGG - Chr5:46338273-46338292 None:intergenic 40.0%
ATACGATGTTTACGAGTGTG+AGG - Chr5:46338133-46338152 None:intergenic 40.0%
ATCTGTTTCACGCATCCTTA+TGG + Chr5:46338082-46338101 MsG0580026847.01.T01:CDS 40.0%
ATTCTCAACAAAAACCCCCA+CGG - Chr5:46338400-46338419 None:intergenic 40.0%
CTCTTCACTGGATTATGACT+CGG + Chr5:46338421-46338440 MsG0580026847.01.T01:CDS 40.0%
GAAGGTGAAGAGGTTAACAA+TGG + Chr5:46338531-46338550 MsG0580026847.01.T01:CDS 40.0%
GGAATAGGAAGAGGTAGAAA+AGG - Chr5:46338160-46338179 None:intergenic 40.0%
GTTCCAGATTGTGATTTCGT+TGG - Chr5:46338110-46338129 None:intergenic 40.0%
TACGATGTTTACGAGTGTGA+GGG - Chr5:46338132-46338151 None:intergenic 40.0%
TCAGATTCGAGCATGATGTT+AGG - Chr5:46338181-46338200 None:intergenic 40.0%
TCGAGCATGATGTTAGGAAT+AGG - Chr5:46338175-46338194 None:intergenic 40.0%
TCGGAGGAGTTTATAATCTC+TGG - Chr5:46338257-46338276 None:intergenic 40.0%
TCTTCACCTTCTATTTCAGC+AGG - Chr5:46338522-46338541 None:intergenic 40.0%
TGCTGAAATAGAAGGTGAAG+AGG + Chr5:46338521-46338540 MsG0580026847.01.T01:CDS 40.0%
TTATCATCAGGAAAGGAAGG+TGG - Chr5:46338882-46338901 None:intergenic 40.0%
! CTGGATTATGACTCGGAAAA+TGG + Chr5:46338428-46338447 MsG0580026847.01.T01:CDS 40.0%
CCTCTTCCTGCTGAAATAGA+AGG + Chr5:46338513-46338532 MsG0580026847.01.T01:CDS 45.0%
CCTTCTATTTCAGCAGGAAG+AGG - Chr5:46338516-46338535 None:intergenic 45.0%
CGCTTCTCCTTATGTGTTCA+CGG + Chr5:46338211-46338230 MsG0580026847.01.T01:CDS 45.0%
CGTGAAACAGATTTGGCCAA+TGG - Chr5:46338074-46338093 None:intergenic 45.0%
GGAACAAAGCTAAGATCGTG+CGG - Chr5:46338375-46338394 None:intergenic 45.0%
GTACAAGCAAGAGCAAGAGA+AGG + Chr5:46338922-46338941 MsG0580026847.01.T01:CDS 45.0%
TCCTTATGTGTTCACGGCTT+CGG + Chr5:46338217-46338236 MsG0580026847.01.T01:CDS 45.0%
!! CTTAGCTTTGTTCCAACCGT+GGG + Chr5:46338381-46338400 MsG0580026847.01.T01:intron 45.0%
!! GCTCTTATCGGTTCATGCAA+CGG + Chr5:46338034-46338053 MsG0580026847.01.T01:CDS 45.0%
!! TCTTAGCTTTGTTCCAACCG+TGG + Chr5:46338380-46338399 MsG0580026847.01.T01:intron 45.0%
!! TTAGCTTTGTTCCAACCGTG+GGG + Chr5:46338382-46338401 MsG0580026847.01.T01:intron 45.0%
!!! AATGCTGTTGCTGTTTTGGG+AGG + Chr5:46338570-46338589 MsG0580026847.01.T01:CDS 45.0%
ACCGAAGCCGTGAACACATA+AGG - Chr5:46338221-46338240 None:intergenic 50.0%
GCGCCAACGAAATCACAATC+TGG + Chr5:46338104-46338123 MsG0580026847.01.T01:CDS 50.0%
GGCCAATGGAGATAGCAATG+AGG - Chr5:46338060-46338079 None:intergenic 50.0%
GGCCTCATTGCTATCTCCAT+TGG + Chr5:46338055-46338074 MsG0580026847.01.T01:CDS 50.0%
GTGATTTCGTTGGCGCCATA+AGG - Chr5:46338100-46338119 None:intergenic 50.0%
TCAACAAAAACCCCCACGGT+TGG - Chr5:46338396-46338415 None:intergenic 50.0%
TGACGGAAGTAAGGCTCTGT+TGG + Chr5:46338749-46338768 MsG0580026847.01.T01:CDS 50.0%
!! TAGCTTTGTTCCAACCGTGG+GGG + Chr5:46338383-46338402 MsG0580026847.01.T01:intron 50.0%
Chromosome Type Strat End Strand Name
Chr5 gene 46338031 46338965 46338031 ID=MsG0580026847.01;Name=MsG0580026847.01
Chr5 mRNA 46338031 46338965 46338031 ID=MsG0580026847.01.T01;Parent=MsG0580026847.01;Name=MsG0580026847.01.T01;_AED=0.35;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|277
Chr5 exon 46338031 46338284 46338031 ID=MsG0580026847.01.T01:exon:1375;Parent=MsG0580026847.01.T01
Chr5 exon 46338386 46338965 46338386 ID=MsG0580026847.01.T01:exon:1376;Parent=MsG0580026847.01.T01
Chr5 CDS 46338031 46338284 46338031 ID=MsG0580026847.01.T01:cds;Parent=MsG0580026847.01.T01
Chr5 CDS 46338386 46338965 46338386 ID=MsG0580026847.01.T01:cds;Parent=MsG0580026847.01.T01
Gene Sequence

>MsG0580026847.01.T01

ATGGCTCTTATCGGTTCATGCAACGGCCTCATTGCTATCTCCATTGGCCAAATCTGTTTCACGCATCCTTATGGCGCCAACGAAATCACAATCTGGAACCCTCACACTCGTAAACATCGTATTATCCCTTTTCTACCTCTTCCTATTCCTAACATCATGCTCGAATCTGACTACATCAATCGCTTCTCCTTATGTGTTCACGGCTTCGGTTTTGATCCTTTATCCAGAGATTATAAACTCCTCCGAATATCTTGCTTTGTTCCAACCGTGGGGGTTTTTGTTGAGAATTCTCTTCACTGGATTATGACTCGGAAAATGGATGATTCACACCTTTGTTTCATTGTTGCGTTTAACCTAACACTTGAGATTTTCAATGTGGTTCCTCTTCCTGCTGAAATAGAAGGTGAAGAGGTTAACAATGGGAGTGAGAGTTTAAAAAATGCTGTTGCTGTTTTGGGAGGTTGTCTTTGTATGATTGTGAATTATGAAACTACTAAAATTGATGTTTGGGTGATGAAAGAATATGGTTCTAGAGATAGTTGGTGTAAACTTTTTACTTTGGTTGAATCGTGTTTCACTTCACCTTTAAAATCTTCAAGGCTTATAGGTTATTCTTGTGACGGAAGTAAGGCTCTGTTGGAATTAAATAAAGAGCTGTTTTGGTTTGATTTGAAGAGTGGACAAGTTAGTTATGTTGAAGGAATTCCTAATTTGCATCAAGCTATGATTTGTGTTGAAAGTCTTGTACCACCTTCCTTTCCTGATGATAATTTTGGGAAGGAGGAGAATCGTACAAGCAAGAGCAAGAGAAGGTACTTTATATTGATTATCTGA
Protein sequence

>MsG0580026847.01.T01

MALIGSCNGLIAISIGQICFTHPYGANEITIWNPHTRKHRIIPFLPLPIPNIMLESDYINRFSLCVHGFGFDPLSRDYKLLRISCFVPTVGVFVENSLHWIMTRKMDDSHLCFIVAFNLTLEIFNVVPLPAEIEGEEVNNGSESLKNAVAVLGGCLCMIVNYETTKIDVWVMKEYGSRDSWCKLFTLVESCFTSPLKSSRLIGYSCDGSKALLELNKELFWFDLKSGQVSYVEGIPNLHQAMICVESLVPPSFPDDNFGKEENRTSKSKRRYFILII*