AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011434.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011434.01.T01 MTR_2g104280 64.671 334 58 4 1 285 1 323 6.76e-141 403
MsG0280011434.01.T01 MTR_2g104260 67.014 288 35 4 1 239 1 277 5.10e-117 337
MsG0280011434.01.T01 MTR_2g104340 56.604 318 101 6 1 285 1 314 2.83e-113 332
MsG0280011434.01.T01 MTR_8g041270 54.489 323 107 4 2 285 3 324 2.13e-105 313
MsG0280011434.01.T01 MTR_4g055820 47.368 323 129 5 1 285 1 320 6.31e-90 271
MsG0280011434.01.T01 MTR_7g069550 41.104 326 142 9 1 285 1 317 3.01e-64 207
MsG0280011434.01.T01 MTR_5g072060 40.127 314 120 8 12 285 4 289 1.13e-53 184
MsG0280011434.01.T01 MTR_2g021800 37.101 345 147 13 1 285 1 335 3.30e-52 176
MsG0280011434.01.T01 MTR_2g021770 36.474 329 150 10 7 285 5 324 6.04e-52 175
MsG0280011434.01.T01 MTR_2g022000 37.609 343 147 14 1 285 1 334 7.53e-52 176
MsG0280011434.01.T01 MTR_4g102410 36.890 328 149 10 4 285 51 366 1.26e-51 176
MsG0280011434.01.T01 MTR_8g013000 39.557 316 142 11 5 280 1 307 1.28e-49 169
MsG0280011434.01.T01 MTR_5g096630 38.006 321 143 10 1 276 5 314 1.41e-48 167
MsG0280011434.01.T01 MTR_2g064950 37.942 311 149 10 5 280 1 302 4.26e-47 162
MsG0280011434.01.T01 MTR_5g074800 45.550 191 97 4 95 285 79 262 8.87e-47 160
MsG0280011434.01.T01 MTR_0129s0070 36.050 319 155 9 4 285 7 313 4.72e-46 160
MsG0280011434.01.T01 MTR_2g021950 36.795 337 142 16 1 286 1 317 5.90e-46 159
MsG0280011434.01.T01 MTR_0129s0050 36.254 331 160 13 1 285 1 326 1.97e-42 150
MsG0280011434.01.T01 MTR_7g079640 37.812 320 126 13 1 280 1 287 2.82e-42 149
MsG0280011434.01.T01 MTR_8g464770 35.562 329 127 14 9 286 7 301 3.34e-42 149
MsG0280011434.01.T01 MTR_5g097330 35.542 332 144 12 5 285 7 319 1.27e-41 148
MsG0280011434.01.T01 MTR_8g063440 34.242 330 134 11 6 285 4 300 2.73e-40 144
MsG0280011434.01.T01 MTR_0129s0120 33.856 319 162 9 4 285 7 313 2.76e-40 144
MsG0280011434.01.T01 MTR_5g037680 36.890 328 121 11 11 285 5 299 9.78e-40 144
MsG0280011434.01.T01 MTR_5g069390 35.030 334 142 13 8 285 20 334 1.44e-39 144
MsG0280011434.01.T01 MTR_0134s0060 34.132 334 158 10 6 285 4 329 1.59e-39 143
MsG0280011434.01.T01 MTR_5g022850 35.017 297 144 11 1 280 1 265 2.85e-39 140
MsG0280011434.01.T01 MTR_7g016930 39.262 298 127 10 8 276 10 282 3.05e-39 140
MsG0280011434.01.T01 MTR_1g007410 35.577 312 148 13 5 274 13 313 6.03e-39 141
MsG0280011434.01.T01 MTR_8g012090 36.449 321 111 11 9 285 11 282 6.72e-39 139
MsG0280011434.01.T01 MTR_5g059430 32.258 341 160 8 3 285 15 342 7.14e-39 141
MsG0280011434.01.T01 MTR_7g017170 37.059 340 127 15 3 285 5 314 1.52e-38 140
MsG0280011434.01.T01 MTR_7g017130 36.765 340 128 15 3 285 5 314 1.75e-38 140
MsG0280011434.01.T01 MTR_0054s0100 33.433 335 160 10 2 286 5 326 6.02e-38 138
MsG0280011434.01.T01 MTR_4g117550 33.770 305 119 9 5 252 8 286 6.07e-38 137
MsG0280011434.01.T01 MTR_0054s0090 33.025 324 163 8 2 280 5 319 7.23e-38 138
MsG0280011434.01.T01 MTR_5g097680 34.302 344 142 14 4 275 7 338 8.45e-38 138
MsG0280011434.01.T01 MTR_4g014370 33.913 345 133 15 8 283 5 323 1.50e-37 137
MsG0280011434.01.T01 MTR_2g038680 35.099 302 128 10 4 246 6 298 5.58e-37 136
MsG0280011434.01.T01 MTR_6g090180 32.635 334 160 9 3 285 36 355 4.67e-36 134
MsG0280011434.01.T01 MTR_6g086825 32.121 330 148 9 12 285 68 377 6.54e-36 134
MsG0280011434.01.T01 MTR_2g034700 34.796 319 129 13 1 276 1 283 1.36e-35 131
MsG0280011434.01.T01 MTR_0831s0010 33.119 311 151 13 12 285 48 338 1.37e-35 132
MsG0280011434.01.T01 MTR_5g091140 33.117 308 150 11 4 276 38 324 1.45e-35 132
MsG0280011434.01.T01 MTR_5g094350 35.636 275 122 10 13 245 12 273 1.52e-35 129
MsG0280011434.01.T01 MTR_7g017040 36.391 327 137 13 1 276 1 307 2.32e-35 131
MsG0280011434.01.T01 MTR_8g046310 34.146 328 134 13 4 285 3 294 3.83e-35 130
MsG0280011434.01.T01 MTR_6g080680 34.441 331 143 12 3 285 8 312 4.49e-35 130
MsG0280011434.01.T01 MTR_3g011120 32.381 315 148 12 1 276 1 289 5.35e-35 130
MsG0280011434.01.T01 MTR_1g007450 34.877 324 157 12 4 285 2 313 2.97e-34 129
MsG0280011434.01.T01 MTR_5g097220 32.110 327 159 12 1 276 1 315 4.46e-34 128
MsG0280011434.01.T01 MTR_6g079770 31.532 333 170 10 5 285 8 334 6.33e-34 128
MsG0280011434.01.T01 MTR_8g039500 30.892 314 158 9 6 285 4 292 8.53e-34 126
MsG0280011434.01.T01 MTR_5g096910 32.198 323 141 10 12 285 15 308 1.52e-33 126
MsG0280011434.01.T01 MTR_2g066170 28.840 319 167 9 6 285 4 301 1.63e-33 126
MsG0280011434.01.T01 MTR_6g079810 33.728 338 154 14 3 285 58 380 1.88e-33 127
MsG0280011434.01.T01 MTR_2g066200 29.846 325 162 11 4 285 2 303 2.97e-33 125
MsG0280011434.01.T01 MTR_8g046200 32.386 352 152 15 4 285 3 338 5.65e-33 125
MsG0280011434.01.T01 MTR_8g467670 31.562 320 130 9 13 278 13 297 1.00e-32 124
MsG0280011434.01.T01 MTR_5g096900 32.390 318 134 12 9 273 7 296 3.33e-32 121
MsG0280011434.01.T01 MTR_5g043605 31.353 303 143 10 1 285 1 256 7.54e-32 121
MsG0280011434.01.T01 MTR_8g046220 33.934 333 136 14 12 285 15 322 1.16e-31 121
MsG0280011434.01.T01 MTR_5g097350 34.030 335 142 14 1 285 1 306 1.33e-31 121
MsG0280011434.01.T01 MTR_4g028750 33.333 321 143 14 6 276 8 307 2.70e-31 120
MsG0280011434.01.T01 MTR_8g064890 31.761 318 151 11 6 279 5 300 2.71e-31 120
MsG0280011434.01.T01 MTR_1g053510 33.138 341 154 16 1 285 1 323 3.33e-31 120
MsG0280011434.01.T01 MTR_1g007430 33.910 289 130 10 25 274 7 273 3.42e-31 119
MsG0280011434.01.T01 MTR_4g130330 33.231 325 142 12 13 285 6 307 4.40e-31 120
MsG0280011434.01.T01 MTR_2g021920 43.293 164 77 6 130 285 37 192 1.67e-30 115
MsG0280011434.01.T01 MTR_5g074850 31.805 349 144 16 1 285 22 340 4.30e-30 120
MsG0280011434.01.T01 MTR_2g065840 32.622 328 148 15 4 285 2 302 5.22e-30 117
MsG0280011434.01.T01 MTR_7g111700 33.333 333 124 13 1 285 1 283 9.16e-30 115
MsG0280011434.01.T01 MTR_8g063330 31.447 318 153 13 13 285 13 310 1.18e-29 117
MsG0280011434.01.T01 MTR_5g097820 34.058 276 107 13 9 231 16 269 1.98e-29 112
MsG0280011434.01.T01 MTR_8g018110 32.177 317 140 12 1 258 1 301 2.06e-29 115
MsG0280011434.01.T01 MTR_5g024260 31.098 328 160 12 4 287 11 316 3.07e-29 115
MsG0280011434.01.T01 MTR_1g098180 28.803 309 154 10 1 278 1 274 1.01e-28 113
MsG0280011434.01.T01 MTR_5g092850 31.230 317 159 9 13 285 15 316 1.38e-28 113
MsG0280011434.01.T01 MTR_2g065860 32.416 327 151 16 4 285 2 303 2.43e-28 112
MsG0280011434.01.T01 MTR_5g075370 32.229 332 144 16 13 285 7 316 1.22e-27 112
MsG0280011434.01.T01 MTR_4g028510 29.167 336 167 12 3 285 2 319 3.65e-27 110
MsG0280011434.01.T01 MTR_6g461660 38.919 185 97 5 98 282 148 316 1.04e-26 108
MsG0280011434.01.T01 MTR_6g461660 65.217 46 16 0 5 50 10 55 2.29e-11 64.3
MsG0280011434.01.T01 MTR_4g028680 32.326 331 152 14 3 280 2 313 1.82e-26 107
MsG0280011434.01.T01 MTR_8g033140 30.973 339 148 15 2 273 4 323 2.99e-26 107
MsG0280011434.01.T01 MTR_8g033110 31.419 296 140 12 1 243 1 286 4.78e-26 106
MsG0280011434.01.T01 MTR_2g066150 32.362 309 132 10 6 280 4 269 5.49e-26 105
MsG0280011434.01.T01 MTR_8g033090 30.211 331 163 14 1 274 1 320 1.95e-25 104
MsG0280011434.01.T01 MTR_4g014370 32.423 293 124 12 8 283 16 251 2.07e-25 103
MsG0280011434.01.T01 MTR_7g104710 32.432 296 153 8 5 276 8 280 2.57e-25 103
MsG0280011434.01.T01 MTR_5g064700 40.102 197 87 9 97 275 96 279 7.01e-25 102
MsG0280011434.01.T01 MTR_5g086590 36.957 184 89 8 89 271 6 163 1.36e-24 99.4
MsG0280011434.01.T01 MTR_8g032980 30.588 340 156 16 1 273 1 327 2.14e-24 102
MsG0280011434.01.T01 MTR_5g098950 37.791 172 80 7 68 224 46 205 4.27e-24 99.0
MsG0280011434.01.T01 MTR_4g028660 31.250 336 157 14 3 285 2 316 5.73e-24 100
MsG0280011434.01.T01 MTR_4g027450 31.250 336 157 14 3 285 2 316 5.73e-24 100
MsG0280011434.01.T01 MTR_1g115205 33.476 233 118 6 7 216 18 236 2.93e-23 96.3
MsG0280011434.01.T01 MTR_5g037190 32.872 289 99 11 1 233 1 250 8.83e-23 94.7
MsG0280011434.01.T01 MTR_8g073570 37.349 166 67 5 11 141 7 170 5.59e-22 90.5
MsG0280011434.01.T01 MTR_5g076490 35.263 190 103 5 98 275 63 244 9.52e-22 93.6
MsG0280011434.01.T01 MTR_6g478230 28.308 325 148 13 12 280 25 320 1.71e-21 94.0
MsG0280011434.01.T01 MTR_8g063350 26.027 292 156 11 1 274 1 250 2.92e-21 92.4
MsG0280011434.01.T01 MTR_6g004450 42.857 126 50 5 128 246 47 157 3.46e-21 90.9
MsG0280011434.01.T01 MTR_4g007940 37.908 153 75 6 98 247 79 214 4.69e-21 91.7
MsG0280011434.01.T01 MTR_6g079790 32.512 203 107 7 98 285 39 226 1.60e-20 89.7
MsG0280011434.01.T01 MTR_5g096070 41.259 143 69 6 8 138 20 159 1.80e-20 86.3
MsG0280011434.01.T01 MTR_1g076810 31.330 233 101 6 9 198 13 229 1.92e-20 91.7
MsG0280011434.01.T01 MTR_6g070880 30.328 244 111 9 9 201 27 262 6.72e-20 87.0
MsG0280011434.01.T01 MTR_6g071420 30.328 244 111 9 9 201 27 262 6.72e-20 87.0
MsG0280011434.01.T01 MTR_1g050312 33.520 179 75 6 96 274 63 197 7.17e-20 87.4
MsG0280011434.01.T01 MTR_1g050308 28.947 228 107 7 6 195 26 236 1.38e-19 87.8
MsG0280011434.01.T01 MTR_3g019290 34.826 201 91 9 1 184 1 178 1.70e-19 84.3
MsG0280011434.01.T01 MTR_5g086780 38.710 155 58 3 1 153 1 120 2.95e-19 84.7
MsG0280011434.01.T01 MTR_5g092860 31.020 245 136 10 32 245 20 262 3.33e-19 86.7
MsG0280011434.01.T01 MTR_6g078010 30.909 220 100 6 74 285 77 252 3.47e-19 86.7
MsG0280011434.01.T01 MTR_6g465360 31.579 228 98 8 6 180 54 276 4.16e-19 85.5
MsG0280011434.01.T01 MTR_8g063370 26.923 312 164 10 1 276 15 298 2.16e-18 84.7
MsG0280011434.01.T01 MTR_8g064790 27.303 304 114 9 12 277 13 247 4.03e-18 83.6
MsG0280011434.01.T01 MTR_5g068490 30.000 210 107 7 78 278 19 197 2.35e-17 80.5
MsG0280011434.01.T01 MTR_6g090250 31.500 200 116 4 98 280 142 337 3.13e-17 81.6
MsG0280011434.01.T01 MTR_3g018750 34.682 173 78 8 129 285 2 155 3.32e-16 76.6
MsG0280011434.01.T01 MTR_5g097650 37.692 130 53 4 12 113 20 149 3.73e-15 72.0
MsG0280011434.01.T01 MTR_8g063310 24.679 312 177 10 1 273 9 301 1.90e-14 73.2
MsG0280011434.01.T01 MTR_4g023090 25.271 277 154 8 1 247 1 254 2.40e-14 72.8
MsG0280011434.01.T01 MTR_6g009350 38.655 119 57 5 130 242 8 116 6.03e-14 69.3
MsG0280011434.01.T01 MTR_5g023970 42.857 112 54 4 176 285 9 112 8.26e-14 68.9
MsG0280011434.01.T01 MTR_5g094360 35.938 128 69 7 106 231 40 156 1.23e-13 67.8
MsG0280011434.01.T01 MTR_8g433040 29.787 188 98 8 13 172 17 198 2.51e-13 69.7
MsG0280011434.01.T01 MTR_8g032380 29.787 188 98 8 13 172 17 198 2.51e-13 69.7
MsG0280011434.01.T01 MTR_0115s0020 25.952 289 145 9 13 252 9 277 3.55e-13 69.7
MsG0280011434.01.T01 MTR_4g023080 22.097 267 149 5 7 245 2 237 5.29e-13 68.9
MsG0280011434.01.T01 MTR_4g016000 34.444 180 78 10 101 274 2 147 6.23e-13 67.0
MsG0280011434.01.T01 MTR_4g133170 23.827 277 158 11 14 259 4 258 9.41e-13 68.2
MsG0280011434.01.T01 MTR_4g023130 24.691 243 131 7 7 245 2 196 1.41e-12 67.4
MsG0280011434.01.T01 MTR_6g090260 38.938 113 60 4 176 285 73 179 1.56e-12 66.6
MsG0280011434.01.T01 MTR_5g070130 29.534 193 102 6 8 172 5 191 5.58e-12 65.9
MsG0280011434.01.T01 MTR_3g007360 21.854 302 169 8 17 279 55 328 9.02e-12 65.5
MsG0280011434.01.T01 MTR_5g070080 24.028 283 142 10 13 246 9 267 9.68e-12 65.1
MsG0280011434.01.T01 MTR_4g021785 24.074 270 141 8 7 245 2 238 9.74e-12 65.1
MsG0280011434.01.T01 MTR_3g047580 35.433 127 65 3 1 110 1 127 1.40e-11 61.2
MsG0280011434.01.T01 MTR_3g034180 27.778 216 105 7 7 192 116 310 1.51e-11 64.7
MsG0280011434.01.T01 MTR_5g048160 25.517 290 150 9 13 252 3 276 2.14e-11 64.3
MsG0280011434.01.T01 MTR_2g024110 24.151 265 133 10 14 243 4 235 3.56e-11 63.5
MsG0280011434.01.T01 MTR_5g057040 26.857 175 88 5 14 154 46 214 4.17e-11 63.9
MsG0280011434.01.T01 MTR_3g007410 21.854 302 169 8 17 279 55 328 4.21e-11 63.2
MsG0280011434.01.T01 MTR_4g109290 31.061 132 85 2 13 144 8 133 4.54e-11 61.2
MsG0280011434.01.T01 MTR_4g023070 20.769 260 157 5 14 246 3 240 4.79e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011434.01.T01 AT3G21120 26.715 277 131 9 13 248 2 247 1.16e-19 88.2
MsG0280011434.01.T01 AT3G21410 24.254 268 155 10 14 257 38 281 5.72e-13 68.9
MsG0280011434.01.T01 AT3G10430 27.165 254 123 10 14 237 5 226 2.53e-12 67.0
MsG0280011434.01.T01 AT3G16210 21.898 274 156 10 14 265 5 242 1.08e-11 65.1

Find 53 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTTCCAATTTGCTTTC+TGG -0.000573 2:-83934502 MsG0280011434.01.T01:intron
ATGCCTAATCATTGTGAAAT+TGG 0.174050 2:-83934047 MsG0280011434.01.T01:CDS
TTAAAATCTTTAAAACGATT+TGG 0.263626 2:-83934679 MsG0280011434.01.T01:CDS
AAGATGACTTTAAAATTATT+AGG 0.279016 2:-83934217 MsG0280011434.01.T01:CDS
TATCGAGACGTTCAAGTTCT+TGG 0.282663 2:+83934168 None:intergenic
TATGTCAGATTGTATATCTA+TGG 0.296211 2:+83933902 None:intergenic
AGGCTATAAATCTCCCATTC+AGG 0.307144 2:+83934104 None:intergenic
TTCGTTCCATGGAACATCTT+CGG 0.312103 2:+83934139 None:intergenic
TCTCGATTATTAAACATTGA+TGG 0.319085 2:-83934020 MsG0280011434.01.T01:CDS
CTTTGTATTCATTGGTAGTT+GGG 0.334591 2:+83934327 None:intergenic
TCGTTCCATGGAACATCTTC+GGG 0.339004 2:+83934140 None:intergenic
CCTATCACCAGAAAGCAAAT+TGG 0.354295 2:+83934495 None:intergenic
TCAAAAGATCTTCATGGGTT+TGG 0.356804 2:-83934254 MsG0280011434.01.T01:CDS
AGGAATGACTTTGTATTCAT+TGG 0.370307 2:+83934319 None:intergenic
TCAAGGTTGTACCACCTTAT+CGG 0.380663 2:-83934286 MsG0280011434.01.T01:CDS
GAACCAATTTCACAATGATT+AGG 0.384082 2:+83934044 None:intergenic
AATAGAGAATACAAGATCAT+TGG 0.391873 2:+83934717 None:intergenic
CTTACATGAGGATGAATTTG+AGG 0.396973 2:-83934572 MsG0280011434.01.T01:CDS
ACTTTGTATTCATTGGTAGT+TGG 0.408364 2:+83934326 None:intergenic
CAAATTCATCCTCATGTAAG+AGG 0.454275 2:+83934575 None:intergenic
TCATAAACTATTTCGTTCCA+TGG 0.455622 2:+83934128 None:intergenic
CTGGCATCAAAAGATCTTCA+TGG 0.466904 2:-83934260 MsG0280011434.01.T01:CDS
CAAGGTTGTACCACCTTATC+GGG 0.469073 2:-83934285 MsG0280011434.01.T01:CDS
ATAGAGAATACAAGATCATT+GGG 0.474204 2:+83934718 None:intergenic
ATACCATGAGATTGAAGAAA+GGG 0.477408 2:+83933824 None:intergenic
AATAGTTTATGAACCTGAAT+GGG 0.479769 2:-83934117 MsG0280011434.01.T01:CDS
AAGGAAATTCATTTGTATTG+TGG 0.480676 2:-83934352 MsG0280011434.01.T01:CDS
TACTCCAAGAGTTACACTTT+AGG 0.482039 2:+83934084 None:intergenic
GATCCCTTTCTTCAATCTCA+TGG 0.483425 2:-83933827 MsG0280011434.01.T01:CDS
AAATAGTTTATGAACCTGAA+TGG 0.484101 2:-83934118 MsG0280011434.01.T01:CDS
ATAGCCTAAAGTGTAACTCT+TGG 0.490764 2:-83934088 MsG0280011434.01.T01:CDS
TGGTACAACCTTGAGAGAGC+TGG 0.491969 2:+83934295 None:intergenic
TTTGATGCCAGCTCCCGATA+AGG 0.493000 2:+83934272 None:intergenic
GATCATAATAATCATGATCA+TGG 0.493662 2:+83934542 None:intergenic
GAGGATGAATTTGAGGTTGT+CGG 0.497067 2:-83934565 MsG0280011434.01.T01:CDS
AATACCATGAGATTGAAGAA+AGG 0.507949 2:+83933823 None:intergenic
GATTGTATATCTATGGGTAT+AGG 0.510834 2:+83933909 None:intergenic
ATGTCAGATTGTATATCTAT+GGG 0.538281 2:+83933903 None:intergenic
ATGGGTTTGGTTATGACCGT+AGG 0.539562 2:-83934241 MsG0280011434.01.T01:CDS
TGGCATCAAAAGATCTTCAT+GGG 0.544834 2:-83934259 MsG0280011434.01.T01:CDS
TTGATGGAATGTCTCATTTG+TGG 0.552817 2:-83934004 MsG0280011434.01.T01:CDS
CTTGGTGCAAAGACGATTGG+TGG 0.554929 2:-83933859 MsG0280011434.01.T01:CDS
GGTACAACCTTGAGAGAGCT+GGG 0.555812 2:+83934296 None:intergenic
CATTCCTCCCAGCTCTCTCA+AGG 0.557912 2:-83934303 MsG0280011434.01.T01:CDS
TGTACCACCTTATCGGGAGC+TGG 0.557935 2:-83934279 MsG0280011434.01.T01:CDS
TGGCTTGGTGCAAAGACGAT+TGG 0.583650 2:-83933862 MsG0280011434.01.T01:CDS
TGCAACCCGAAGATGTTCCA+TGG 0.584300 2:-83934145 MsG0280011434.01.T01:CDS
GATGCCAGCTCCCGATAAGG+TGG 0.612556 2:+83934275 None:intergenic
TTGGATGCGTATGTAAACCA+TGG 0.646044 2:-83934660 MsG0280011434.01.T01:CDS
TACATATGTCCTCTTACATG+AGG 0.654403 2:-83934584 MsG0280011434.01.T01:CDS
GTATCATTGTAATCAGAGTG+AGG 0.679765 2:+83934604 None:intergenic
TGTAATCAGAGTGAGGAGTG+CGG 0.695386 2:+83934611 None:intergenic
ACAACCTTGAGAGAGCTGGG+AGG 0.790825 2:+83934299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATGACTTTAAAATTATT+AGG - Chr2:83934325-83934344 MsG0280011434.01.T01:CDS 15.0%
!!! AATCGTTTTAAAGATTTTAA+AGG + Chr2:83933863-83933882 None:intergenic 15.0%
!!! TTAAAATCTTTAAAACGATT+TGG - Chr2:83933863-83933882 MsG0280011434.01.T01:CDS 15.0%
!!! TTTAATACTTGTGATTATTT+TGG - Chr2:83934133-83934152 MsG0280011434.01.T01:CDS 15.0%
!! ATCACAAGTATTAAAATCAA+AGG + Chr2:83934128-83934147 None:intergenic 20.0%
!!! ATAGATACAGATTTTTATCT+TGG - Chr2:83934660-83934679 MsG0280011434.01.T01:CDS 20.0%
! AAATAGTTTATGAACCTGAA+TGG - Chr2:83934424-83934443 MsG0280011434.01.T01:intron 25.0%
! AAGGAAATTCATTTGTATTG+TGG - Chr2:83934190-83934209 MsG0280011434.01.T01:CDS 25.0%
! AATAGAGAATACAAGATCAT+TGG + Chr2:83933828-83933847 None:intergenic 25.0%
! AATAGTTTATGAACCTGAAT+GGG - Chr2:83934425-83934444 MsG0280011434.01.T01:intron 25.0%
! ATAGAGAATACAAGATCATT+GGG + Chr2:83933827-83933846 None:intergenic 25.0%
! ATGTCAGATTGTATATCTAT+GGG + Chr2:83934642-83934661 None:intergenic 25.0%
! CAAATGAATTTCCTTATGTA+AGG + Chr2:83934185-83934204 None:intergenic 25.0%
! CTGTAAGTGAAAAAAAGTTT+AGG - Chr2:83933792-83933811 MsG0280011434.01.T01:CDS 25.0%
! GATCATAATAATCATGATCA+TGG + Chr2:83934003-83934022 None:intergenic 25.0%
! TATGTCAGATTGTATATCTA+TGG + Chr2:83934643-83934662 None:intergenic 25.0%
! TCTCGATTATTAAACATTGA+TGG - Chr2:83934522-83934541 MsG0280011434.01.T01:CDS 25.0%
!! TTTTCAAATAAGAAAGTCCA+TGG + Chr2:83933902-83933921 None:intergenic 25.0%
!!! AAATACACCTATTTTTCACA+TGG - Chr2:83934746-83934765 MsG0280011434.01.T01:CDS 25.0%
!!! AATACACCTATTTTTCACAT+GGG - Chr2:83934747-83934766 MsG0280011434.01.T01:CDS 25.0%
!!! CTTTTTTTCACTTACAGATT+TGG + Chr2:83933789-83933808 None:intergenic 25.0%
!!! TTTTAAAGTCATCTTTCCTA+CGG + Chr2:83934320-83934339 None:intergenic 25.0%
AATACCATGAGATTGAAGAA+AGG + Chr2:83934722-83934741 None:intergenic 30.0%
AGGAATGACTTTGTATTCAT+TGG + Chr2:83934226-83934245 None:intergenic 30.0%
ATACCATGAGATTGAAGAAA+GGG + Chr2:83934721-83934740 None:intergenic 30.0%
ATGCCTAATCATTGTGAAAT+TGG - Chr2:83934495-83934514 MsG0280011434.01.T01:intron 30.0%
GAACCAATTTCACAATGATT+AGG + Chr2:83934501-83934520 None:intergenic 30.0%
GATTGTATATCTATGGGTAT+AGG + Chr2:83934636-83934655 None:intergenic 30.0%
TCATAAACTATTTCGTTCCA+TGG + Chr2:83934417-83934436 None:intergenic 30.0%
TCATTTCCCATGTGAAAAAT+AGG + Chr2:83934756-83934775 None:intergenic 30.0%
! ACTTTGTATTCATTGGTAGT+TGG + Chr2:83934219-83934238 None:intergenic 30.0%
! CTTTGTATTCATTGGTAGTT+GGG + Chr2:83934218-83934237 None:intergenic 30.0%
! TACAGATTTTTATCTTGGCT+TGG - Chr2:83934665-83934684 MsG0280011434.01.T01:CDS 30.0%
!! TTTTCCTCTTGAAATGGATT+TGG + Chr2:83934100-83934119 None:intergenic 30.0%
ATAGCCTAAAGTGTAACTCT+TGG - Chr2:83934454-83934473 MsG0280011434.01.T01:intron 35.0%
CAAATTCATCCTCATGTAAG+AGG + Chr2:83933970-83933989 None:intergenic 35.0%
CTTACATGAGGATGAATTTG+AGG - Chr2:83933970-83933989 MsG0280011434.01.T01:CDS 35.0%
CTTTCCAAATCCATTTCAAG+AGG - Chr2:83934093-83934112 MsG0280011434.01.T01:CDS 35.0%
GTATCATTGTAATCAGAGTG+AGG + Chr2:83933941-83933960 None:intergenic 35.0%
TACATATGTCCTCTTACATG+AGG - Chr2:83933958-83933977 MsG0280011434.01.T01:CDS 35.0%
TACTCCAAGAGTTACACTTT+AGG + Chr2:83934461-83934480 None:intergenic 35.0%
TCAAAAGATCTTCATGGGTT+TGG - Chr2:83934288-83934307 MsG0280011434.01.T01:CDS 35.0%
TGAACTATGTGCCTTACATA+AGG - Chr2:83934171-83934190 MsG0280011434.01.T01:CDS 35.0%
TGGCATCAAAAGATCTTCAT+GGG - Chr2:83934283-83934302 MsG0280011434.01.T01:CDS 35.0%
TTGATGGAATGTCTCATTTG+TGG - Chr2:83934538-83934557 MsG0280011434.01.T01:CDS 35.0%
! GAAGAGTTTTCCTCTTGAAA+TGG + Chr2:83934106-83934125 None:intergenic 35.0%
AAGGCACATAGTTCAGTAAC+AGG + Chr2:83934166-83934185 None:intergenic 40.0%
AGGCACATAGTTCAGTAACA+GGG + Chr2:83934165-83934184 None:intergenic 40.0%
AGGCTATAAATCTCCCATTC+AGG + Chr2:83934441-83934460 None:intergenic 40.0%
CCTATCACCAGAAAGCAAAT+TGG + Chr2:83934050-83934069 None:intergenic 40.0%
CTGGCATCAAAAGATCTTCA+TGG - Chr2:83934282-83934301 MsG0280011434.01.T01:CDS 40.0%
GATCCCTTTCTTCAATCTCA+TGG - Chr2:83934715-83934734 MsG0280011434.01.T01:CDS 40.0%
TCAAGGTTGTACCACCTTAT+CGG - Chr2:83934256-83934275 MsG0280011434.01.T01:CDS 40.0%
TTCGTTCCATGGAACATCTT+CGG + Chr2:83934406-83934425 None:intergenic 40.0%
TTGGATGCGTATGTAAACCA+TGG - Chr2:83933882-83933901 MsG0280011434.01.T01:CDS 40.0%
! CCAATTTGCTTTCTGGTGAT+AGG - Chr2:83934047-83934066 MsG0280011434.01.T01:CDS 40.0%
! GAGGATGAATTTGAGGTTGT+CGG - Chr2:83933977-83933996 MsG0280011434.01.T01:CDS 40.0%
! TATCGAGACGTTCAAGTTCT+TGG + Chr2:83934377-83934396 None:intergenic 40.0%
! TGCTCTTCCAATTTGCTTTC+TGG - Chr2:83934040-83934059 MsG0280011434.01.T01:CDS 40.0%
CAAGGTTGTACCACCTTATC+GGG - Chr2:83934257-83934276 MsG0280011434.01.T01:CDS 45.0%
TCGTTCCATGGAACATCTTC+GGG + Chr2:83934405-83934424 None:intergenic 45.0%
TGTAATCAGAGTGAGGAGTG+CGG + Chr2:83933934-83933953 None:intergenic 45.0%
! ATGGGTTTGGTTATGACCGT+AGG - Chr2:83934301-83934320 MsG0280011434.01.T01:CDS 45.0%
GGTACAACCTTGAGAGAGCT+GGG + Chr2:83934249-83934268 None:intergenic 50.0%
TGCAACCCGAAGATGTTCCA+TGG - Chr2:83934397-83934416 MsG0280011434.01.T01:intron 50.0%
TGGTACAACCTTGAGAGAGC+TGG + Chr2:83934250-83934269 None:intergenic 50.0%
TTTGATGCCAGCTCCCGATA+AGG + Chr2:83934273-83934292 None:intergenic 50.0%
! CTTGGTGCAAAGACGATTGG+TGG - Chr2:83934683-83934702 MsG0280011434.01.T01:CDS 50.0%
!! TGGCTTGGTGCAAAGACGAT+TGG - Chr2:83934680-83934699 MsG0280011434.01.T01:CDS 50.0%
ACAACCTTGAGAGAGCTGGG+AGG + Chr2:83934246-83934265 None:intergenic 55.0%
CATTCCTCCCAGCTCTCTCA+AGG - Chr2:83934239-83934258 MsG0280011434.01.T01:CDS 55.0%
TGTACCACCTTATCGGGAGC+TGG - Chr2:83934263-83934282 MsG0280011434.01.T01:CDS 55.0%
GATGCCAGCTCCCGATAAGG+TGG + Chr2:83934270-83934289 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 83933782 83934782 83933782 ID=MsG0280011434.01;Name=MsG0280011434.01
Chr2 mRNA 83933782 83934782 83933782 ID=MsG0280011434.01.T01;Parent=MsG0280011434.01;Name=MsG0280011434.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|289
Chr2 exon 83934503 83934782 83934503 ID=MsG0280011434.01.T01:exon:12868;Parent=MsG0280011434.01.T01
Chr2 exon 83933782 83934371 83933782 ID=MsG0280011434.01.T01:exon:12867;Parent=MsG0280011434.01.T01
Chr2 CDS 83934503 83934782 83934503 ID=MsG0280011434.01.T01:cds;Parent=MsG0280011434.01.T01
Chr2 CDS 83933782 83934371 83933782 ID=MsG0280011434.01.T01:cds;Parent=MsG0280011434.01.T01
Gene Sequence

>MsG0280011434.01.T01

ATGGCCAAATCTGTAAGTGAAAAAAAGTTTAGGAATCACATACCCAATGATCTTGTATTCTCTATTCTGTCAAAACTTCCTTTAAAATCTTTAAAACGATTTGGATGCGTATGTAAACCATGGACTTTCTTATTTGAAAACTCTTGTTTCCGCACTCCTCACTCTGATTACAATGATACATATGTCCTCTTACATGAGGATGAATTTGAGGTTGTCGGCCATGATCATGATTATTATGATCATGATTTTTCTATTCATTGCTCTTCCAATTTGCTTTCTGGAAATTCATTTGTATTGTGGAACCCAACTACCAATGAATACAAAGTCATTCCTCCCAGCTCTCTCAAGGTTGTACCACCTTATCGGGAGCTGGCATCAAAAGATCTTCATGGGTTTGGTTATGACCGTAGGAAAGATGACTTTAAAATTATTAGGTACATGCGATTTACTACAGTAAGTGACCAAGAACTTGAACGTCTCGATATGCAACCCGAAGATGTTCCATGGAACGAAATAGTTTATGAACCTGAATGGGAGATTTATAGCCTAAAGTGTAACTCTTGGAGTACACTTGATATCAATATGCCTAATCATTGTGAAATTGGTTCATCTCGATTATTAAACATTGATGGAATGTCTCATTTGTGGTATGAAAGTGAAAATCGTGACGAACATATTTTAGTTTCATTTGACTTTAGCAATGAGATGTTTGTTACAACACCTATACCCATAGATATACAATCTGACATAGATACAGATTTTTATCTTGGCTTGGTGCAAAGACGATTGGTGGTGCTTAATAGATCCCTTTCTTCAATCTCATGGTATTATTCAAATACACCTATTTTTCACATGGGAAATGATATTTGA
Protein sequence

>MsG0280011434.01.T01

MAKSVSEKKFRNHIPNDLVFSILSKLPLKSLKRFGCVCKPWTFLFENSCFRTPHSDYNDTYVLLHEDEFEVVGHDHDYYDHDFSIHCSSNLLSGNSFVLWNPTTNEYKVIPPSSLKVVPPYRELASKDLHGFGYDRRKDDFKIIRYMRFTTVSDQELERLDMQPEDVPWNEIVYEPEWEIYSLKCNSWSTLDINMPNHCEIGSSRLLNIDGMSHLWYESENRDEHILVSFDFSNEMFVTTPIPIDIQSDIDTDFYLGLVQRRLVVLNRSLSSISWYYSNTPIFHMGNDI*