AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024169.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024169.01.T01 MTR_5g097330 58.280 314 113 7 1 299 89 399 1.06e-119 349
MsG0580024169.01.T01 MTR_7g111700 53.312 317 101 8 1 299 74 361 1.84e-97 291
MsG0580024169.01.T01 MTR_8g012090 58.392 286 74 8 1 272 80 334 1.38e-95 285
MsG0580024169.01.T01 MTR_5g097350 52.000 300 129 8 2 299 97 383 2.75e-92 279
MsG0580024169.01.T01 MTR_0129s0070 48.387 310 145 7 1 299 87 392 9.24e-89 270
MsG0580024169.01.T01 MTR_0129s0120 47.742 310 147 7 1 299 87 392 9.95e-86 263
MsG0580024169.01.T01 MTR_5g023970 65.591 186 62 2 115 299 8 192 7.34e-79 238
MsG0580024169.01.T01 MTR_5g096910 46.645 313 140 10 2 299 89 389 6.19e-77 240
MsG0580024169.01.T01 MTR_6g086825 44.828 319 152 8 1 299 142 456 2.26e-76 240
MsG0580024169.01.T01 MTR_6g079810 44.615 325 151 9 1 299 138 459 7.03e-75 237
MsG0580024169.01.T01 MTR_0054s0090 45.141 319 151 8 1 299 88 402 6.46e-74 233
MsG0580024169.01.T01 MTR_8g063440 46.689 302 151 7 2 299 84 379 1.39e-73 231
MsG0580024169.01.T01 MTR_2g066170 41.776 304 165 9 2 298 83 381 2.62e-73 230
MsG0580024169.01.T01 MTR_0054s0100 45.312 320 151 9 1 299 88 404 4.45e-73 230
MsG0580024169.01.T01 MTR_2g104340 43.082 318 156 9 2 299 80 392 2.51e-72 228
MsG0580024169.01.T01 MTR_6g080680 43.408 311 151 8 1 297 90 389 5.33e-72 227
MsG0580024169.01.T01 MTR_0129s0050 44.308 325 152 10 1 299 83 404 5.64e-72 228
MsG0580024169.01.T01 MTR_5g037680 45.741 317 130 10 2 297 85 380 1.35e-71 228
MsG0580024169.01.T01 MTR_2g038680 44.000 325 147 11 2 299 91 407 4.67e-71 225
MsG0580024169.01.T01 MTR_4g117550 44.079 304 137 8 1 297 90 367 2.06e-70 223
MsG0580024169.01.T01 MTR_4g007940 40.635 315 160 10 2 296 28 335 1.04e-69 219
MsG0580024169.01.T01 MTR_2g021800 45.886 316 145 10 2 295 97 408 1.62e-69 221
MsG0580024169.01.T01 MTR_6g090180 44.548 321 152 10 1 299 118 434 8.37e-69 220
MsG0580024169.01.T01 MTR_4g028510 42.222 315 163 9 1 299 87 398 8.48e-69 221
MsG0580024169.01.T01 MTR_6g079770 42.508 327 157 9 2 299 89 413 2.55e-68 218
MsG0580024169.01.T01 MTR_5g074800 43.312 314 148 11 2 295 33 336 2.57e-68 216
MsG0580024169.01.T01 MTR_8g041270 42.812 320 153 10 5 299 88 402 5.66e-68 217
MsG0580024169.01.T01 MTR_4g130330 45.483 321 145 13 2 299 74 387 7.64e-68 216
MsG0580024169.01.T01 MTR_4g102410 44.839 310 154 10 5 299 139 446 2.00e-67 217
MsG0580024169.01.T01 MTR_2g066200 40.645 310 164 9 2 299 83 384 4.53e-67 214
MsG0580024169.01.T01 MTR_5g097220 42.814 334 146 11 2 299 80 404 9.92e-67 214
MsG0580024169.01.T01 MTR_7g017040 42.812 320 152 12 1 299 85 394 1.78e-66 213
MsG0580024169.01.T01 MTR_4g028660 41.214 313 167 8 1 299 86 395 2.05e-66 213
MsG0580024169.01.T01 MTR_4g027450 41.214 313 167 8 1 299 86 395 2.05e-66 213
MsG0580024169.01.T01 MTR_5g096630 42.368 321 160 10 2 299 92 410 3.24e-66 213
MsG0580024169.01.T01 MTR_8g464770 43.624 298 158 8 2 297 85 374 4.01e-66 211
MsG0580024169.01.T01 MTR_2g021770 42.453 318 159 10 2 299 90 403 7.11e-66 212
MsG0580024169.01.T01 MTR_2g065860 40.514 311 164 7 2 299 82 384 1.84e-65 210
MsG0580024169.01.T01 MTR_6g078010 44.795 317 135 12 1 298 35 330 2.00e-65 209
MsG0580024169.01.T01 MTR_7g069550 41.720 314 151 12 2 295 90 391 3.95e-65 209
MsG0580024169.01.T01 MTR_3g011120 43.189 301 147 12 2 293 85 370 2.04e-64 207
MsG0580024169.01.T01 MTR_2g022000 45.118 297 139 9 7 281 101 395 2.92e-64 208
MsG0580024169.01.T01 MTR_0134s0060 41.411 326 158 11 2 297 84 406 3.23e-64 207
MsG0580024169.01.T01 MTR_2g066150 40.461 304 150 9 2 299 78 356 4.17e-64 206
MsG0580024169.01.T01 MTR_4g028680 41.401 314 166 8 1 299 86 396 4.61e-64 207
MsG0580024169.01.T01 MTR_5g069390 42.994 314 157 9 2 298 104 412 1.13e-63 209
MsG0580024169.01.T01 MTR_5g022850 39.365 315 168 8 2 299 41 349 4.65e-63 203
MsG0580024169.01.T01 MTR_5g059430 41.772 316 164 7 2 299 109 422 5.71e-63 205
MsG0580024169.01.T01 MTR_2g065840 41.270 315 157 12 2 299 82 385 6.01e-63 204
MsG0580024169.01.T01 MTR_2g021950 43.730 311 156 12 2 299 89 393 6.09e-63 204
MsG0580024169.01.T01 MTR_2g104280 40.498 321 160 11 5 299 86 401 7.88e-63 204
MsG0580024169.01.T01 MTR_6g478230 42.025 326 142 9 1 299 98 403 9.81e-63 204
MsG0580024169.01.T01 MTR_6g090250 40.936 342 155 12 1 298 81 419 2.16e-62 203
MsG0580024169.01.T01 MTR_0831s0010 40.523 306 162 9 2 299 124 417 2.33e-62 203
MsG0580024169.01.T01 MTR_6g461660 45.455 319 143 16 2 299 88 396 2.56e-62 202
MsG0580024169.01.T01 MTR_6g079790 42.857 308 150 9 14 299 2 305 2.96e-62 199
MsG0580024169.01.T01 MTR_7g017130 41.290 310 165 9 1 299 90 393 3.28e-62 202
MsG0580024169.01.T01 MTR_4g028750 41.196 301 161 8 1 288 86 383 1.02e-61 201
MsG0580024169.01.T01 MTR_4g014370 40.000 325 157 8 5 299 89 405 1.39e-61 201
MsG0580024169.01.T01 MTR_5g064700 40.533 338 155 13 1 299 34 364 9.49e-61 197
MsG0580024169.01.T01 MTR_8g039500 41.993 281 142 10 2 272 77 346 3.09e-60 195
MsG0580024169.01.T01 MTR_1g007410 43.312 314 149 10 1 295 95 398 1.26e-59 196
MsG0580024169.01.T01 MTR_4g055820 42.125 273 135 7 5 258 90 358 1.78e-59 194
MsG0580024169.01.T01 MTR_5g043605 41.216 296 150 10 12 298 54 334 3.32e-59 193
MsG0580024169.01.T01 MTR_7g017170 39.752 322 165 10 1 299 90 405 7.28e-59 194
MsG0580024169.01.T01 MTR_6g004450 47.210 233 109 6 73 299 41 265 2.05e-57 186
MsG0580024169.01.T01 MTR_8g033140 36.937 333 161 12 2 297 92 412 2.10e-57 190
MsG0580024169.01.T01 MTR_5g097680 41.124 338 157 14 1 299 89 423 5.38e-57 189
MsG0580024169.01.T01 MTR_7g079640 41.176 306 144 15 1 294 85 366 1.29e-56 187
MsG0580024169.01.T01 MTR_5g068490 39.100 289 151 9 11 298 8 272 1.42e-56 184
MsG0580024169.01.T01 MTR_5g072060 41.892 296 128 10 2 278 77 347 9.99e-56 190
MsG0580024169.01.T01 MTR_8g064890 40.728 302 162 9 7 299 91 384 1.56e-55 184
MsG0580024169.01.T01 MTR_8g046200 38.218 348 153 11 2 299 83 418 1.82e-55 185
MsG0580024169.01.T01 MTR_8g467670 39.333 300 159 11 5 296 88 372 4.52e-55 183
MsG0580024169.01.T01 MTR_1g007450 42.088 297 154 8 2 283 83 376 6.79e-55 184
MsG0580024169.01.T01 MTR_1g050312 38.742 302 147 9 2 295 16 287 1.01e-54 179
MsG0580024169.01.T01 MTR_5g086590 45.494 233 106 8 49 275 14 231 1.04e-54 178
MsG0580024169.01.T01 MTR_1g053510 36.677 319 165 9 7 298 93 401 2.32e-54 182
MsG0580024169.01.T01 MTR_8g046310 38.889 306 159 9 2 298 87 373 7.10e-54 180
MsG0580024169.01.T01 MTR_6g087620 39.088 307 144 8 2 293 1 279 1.55e-53 176
MsG0580024169.01.T01 MTR_5g092860 39.935 308 133 12 2 281 68 351 3.53e-53 178
MsG0580024169.01.T01 MTR_2g034700 42.395 309 140 14 2 296 85 369 5.42e-52 175
MsG0580024169.01.T01 MTR_1g007430 43.609 266 126 9 7 261 72 324 8.51e-52 173
MsG0580024169.01.T01 MTR_7g023800 38.188 309 139 7 2 296 34 304 1.29e-51 172
MsG0580024169.01.T01 MTR_5g092850 38.838 327 160 12 2 299 83 398 3.09e-51 174
MsG0580024169.01.T01 MTR_2g021920 46.025 239 103 9 81 299 37 269 4.59e-51 169
MsG0580024169.01.T01 MTR_5g076490 40.506 316 158 8 1 299 30 332 8.54e-51 171
MsG0580024169.01.T01 MTR_2g064950 38.924 316 154 13 2 294 82 381 3.60e-50 171
MsG0580024169.01.T01 MTR_8g063330 39.777 269 141 8 2 258 89 348 3.94e-50 172
MsG0580024169.01.T01 MTR_8g032980 34.493 345 168 10 2 297 80 415 1.28e-49 170
MsG0580024169.01.T01 MTR_5g097850 50.000 186 79 4 122 299 62 241 2.62e-49 164
MsG0580024169.01.T01 MTR_5g091140 39.249 293 142 9 5 282 125 396 7.13e-49 168
MsG0580024169.01.T01 MTR_8g013000 39.711 277 143 8 2 261 84 353 1.28e-47 164
MsG0580024169.01.T01 MTR_8g046220 36.716 335 155 12 2 299 88 402 1.84e-47 164
MsG0580024169.01.T01 MTR_8g033110 36.446 332 157 14 7 297 91 409 5.05e-46 160
MsG0580024169.01.T01 MTR_5g075370 38.580 324 165 15 2 297 77 394 5.18e-46 166
MsG0580024169.01.T01 MTR_6g090260 47.312 186 92 4 118 298 75 259 8.64e-46 155
MsG0580024169.01.T01 MTR_8g033090 34.535 333 169 12 2 297 86 406 1.68e-45 159
MsG0580024169.01.T01 MTR_1g098180 35.275 309 149 9 2 297 90 360 7.78e-45 156
MsG0580024169.01.T01 MTR_5g024260 38.111 307 159 14 2 286 92 389 1.46e-44 156
MsG0580024169.01.T01 MTR_8g036970 36.585 287 122 9 1 281 70 302 3.12e-44 154
MsG0580024169.01.T01 MTR_5g074850 38.978 313 156 17 2 287 104 408 3.21e-44 161
MsG0580024169.01.T01 MTR_7g016930 40.809 272 139 8 4 263 72 333 5.81e-44 153
MsG0580024169.01.T01 MTR_8g063350 35.889 287 151 12 7 277 50 319 1.64e-41 147
MsG0580024169.01.T01 MTR_8g063310 33.007 306 170 13 10 295 99 389 6.78e-41 147
MsG0580024169.01.T01 MTR_8g063370 31.803 305 186 11 2 295 91 384 2.32e-40 145
MsG0580024169.01.T01 MTR_8g018110 33.022 321 165 12 7 297 91 391 3.08e-40 144
MsG0580024169.01.T01 MTR_8g033000 32.836 335 169 11 8 297 34 357 7.26e-40 143
MsG0580024169.01.T01 MTR_7g019250 42.534 221 93 7 80 288 223 421 7.47e-40 145
MsG0580024169.01.T01 MTR_3g018750 39.095 243 118 8 80 299 2 237 1.27e-39 139
MsG0580024169.01.T01 MTR_8g064790 34.295 312 131 10 1 299 83 333 5.87e-39 140
MsG0580024169.01.T01 MTR_5g098950 38.961 231 102 8 39 261 75 274 1.13e-38 137
MsG0580024169.01.T01 MTR_4g016000 40.284 211 94 9 53 253 2 190 2.76e-38 135
MsG0580024169.01.T01 MTR_6g009350 41.709 199 102 7 76 266 3 195 3.08e-38 134
MsG0580024169.01.T01 MTR_5g066420 49.333 150 66 3 150 291 1 148 7.57e-38 131
MsG0580024169.01.T01 MTR_5g096920 50.993 151 70 3 150 299 1 148 1.95e-37 130
MsG0580024169.01.T01 MTR_8g035690 35.075 268 131 8 62 297 41 297 3.93e-37 134
MsG0580024169.01.T01 MTR_4g014370 40.758 211 113 5 94 299 130 333 4.57e-37 135
MsG0580024169.01.T01 MTR_5g097540 50.345 145 63 5 118 261 97 233 1.07e-35 130
MsG0580024169.01.T01 MTR_1g050308 32.131 305 134 10 2 299 105 343 1.41e-34 129
MsG0580024169.01.T01 MTR_6g079730 53.030 132 61 1 168 298 14 145 3.38e-34 122
MsG0580024169.01.T01 MTR_3g030620 45.062 162 73 7 147 297 20 176 4.30e-31 115
MsG0580024169.01.T01 MTR_1g076810 45.062 162 69 6 1 151 89 241 6.32e-31 122
MsG0580024169.01.T01 MTR_7g017150 40.741 189 106 4 114 299 78 263 1.15e-30 116
MsG0580024169.01.T01 MTR_5g036250 62.105 95 35 1 201 295 10 103 2.16e-30 113
MsG0580024169.01.T01 MTR_7g101200 37.383 214 104 7 51 260 41 228 4.93e-30 114
MsG0580024169.01.T01 MTR_5g097660 52.632 114 52 2 188 299 3 116 5.22e-30 110
MsG0580024169.01.T01 MTR_7g017120 40.212 189 107 4 114 299 77 262 8.89e-30 114
MsG0580024169.01.T01 MTR_5g096900 38.976 254 106 15 1 226 81 313 1.01e-29 115
MsG0580024169.01.T01 MTR_2g104260 36.598 194 101 8 5 179 86 276 2.24e-29 113
MsG0580024169.01.T01 MTR_5g086780 46.617 133 62 4 155 279 97 228 1.25e-26 104
MsG0580024169.01.T01 MTR_5g086780 50.000 56 28 0 49 104 65 120 1.60e-11 63.2
MsG0580024169.01.T01 MTR_2g022020 48.039 102 51 1 198 299 17 116 1.05e-23 93.6
MsG0580024169.01.T01 MTR_1g047080 30.233 301 147 11 7 299 34 279 1.73e-22 95.1
MsG0580024169.01.T01 MTR_5g094350 35.610 205 103 9 1 189 85 276 2.03e-22 94.7
MsG0580024169.01.T01 MTR_5g091150 34.529 223 83 8 14 211 2 186 2.14e-22 92.8
MsG0580024169.01.T01 MTR_5g097820 36.126 191 85 8 2 172 96 269 2.18e-22 94.4
MsG0580024169.01.T01 MTR_7g104710 34.498 229 106 9 1 216 87 284 4.99e-21 91.7
MsG0580024169.01.T01 MTR_6g070880 34.969 163 81 6 2 142 103 262 1.15e-20 89.4
MsG0580024169.01.T01 MTR_6g071420 34.969 163 81 6 2 142 103 262 1.15e-20 89.4
MsG0580024169.01.T01 MTR_5g096050 46.789 109 46 2 150 246 1 109 3.24e-20 84.7
MsG0580024169.01.T01 MTR_1g068860 26.950 282 175 12 8 273 68 334 6.44e-20 89.4
MsG0580024169.01.T01 MTR_5g037190 35.263 190 80 9 1 174 88 250 1.67e-19 86.3
MsG0580024169.01.T01 MTR_1g068835 24.735 283 184 11 8 276 68 335 1.69e-19 88.2
MsG0580024169.01.T01 MTR_0064s0160 25.763 295 196 10 16 297 133 417 1.43e-18 85.9
MsG0580024169.01.T01 MTR_4g133170 25.279 269 166 11 27 276 81 333 3.72e-18 84.3
MsG0580024169.01.T01 MTR_1g068875 24.183 306 198 12 8 298 68 354 4.09e-18 84.0
MsG0580024169.01.T01 MTR_2g026010 23.973 292 189 11 12 278 60 343 1.11e-17 82.8
MsG0580024169.01.T01 MTR_2g028130 24.333 300 183 13 6 276 82 366 1.44e-17 82.8
MsG0580024169.01.T01 MTR_3g097190 55.738 61 27 0 223 283 28 88 4.45e-17 77.8
MsG0580024169.01.T01 MTR_2g028140 24.354 271 172 10 30 276 104 365 1.11e-16 80.1
MsG0580024169.01.T01 MTR_0115s0020 27.187 320 191 14 8 299 90 395 1.93e-16 79.3
MsG0580024169.01.T01 MTR_2g031720 23.938 259 175 9 31 276 94 343 2.56e-16 79.0
MsG0580024169.01.T01 MTR_1g050305 50.588 85 37 2 204 283 21 105 3.32e-16 74.3
MsG0580024169.01.T01 MTR_5g048160 24.759 311 193 13 16 299 92 388 5.88e-16 77.8
MsG0580024169.01.T01 MTR_1g115205 31.928 166 86 7 4 157 86 236 1.56e-15 75.1
MsG0580024169.01.T01 MTR_8g073570 43.478 92 50 2 2 92 80 170 2.01e-15 73.2
MsG0580024169.01.T01 MTR_2g024100 24.390 287 175 12 22 276 85 361 3.12e-15 75.9
MsG0580024169.01.T01 MTR_1g097560 25.676 296 181 14 8 297 110 372 7.82e-15 74.3
MsG0580024169.01.T01 MTR_3g024130 28.175 252 141 11 2 241 30 253 9.29e-15 73.9
MsG0580024169.01.T01 MTR_5g057710 24.303 251 158 11 2 246 114 338 1.67e-14 73.6
MsG0580024169.01.T01 MTR_3g013770 29.365 252 149 13 2 247 101 329 1.83e-14 73.6
MsG0580024169.01.T01 MTR_2g028110 24.068 295 186 14 2 276 61 337 2.53e-14 73.2
MsG0580024169.01.T01 MTR_3g083010 25.106 235 153 7 29 248 104 330 2.55e-14 73.2
MsG0580024169.01.T01 MTR_1g037540 26.909 275 154 12 1 258 110 354 2.94e-14 72.8
MsG0580024169.01.T01 MTR_4g094400 41.818 110 49 3 142 236 2 111 3.86e-14 68.6
MsG0580024169.01.T01 MTR_2g425980 23.469 294 188 12 30 298 95 376 6.78e-14 72.0
MsG0580024169.01.T01 MTR_5g057790 25.991 227 135 11 24 241 131 333 1.49e-13 70.9
MsG0580024169.01.T01 MTR_2g031640 23.574 263 173 11 30 276 89 339 1.67e-13 70.5
MsG0580024169.01.T01 MTR_3g006570 26.829 246 142 13 2 238 89 305 2.19e-13 70.1
MsG0580024169.01.T01 MTR_5g007610 26.609 233 145 9 31 250 133 352 2.56e-13 70.1
MsG0580024169.01.T01 MTR_3g009240 27.014 211 133 8 33 241 128 319 4.16e-13 69.3
MsG0580024169.01.T01 MTR_4g023130 24.138 261 157 9 49 299 77 306 5.66e-13 68.6
MsG0580024169.01.T01 MTR_0667s0010 22.772 303 184 15 8 276 71 357 7.26e-13 68.9
MsG0580024169.01.T01 MTR_3g019290 41.053 95 49 4 36 125 87 179 1.78e-12 65.1
MsG0580024169.01.T01 MTR_3g436150 27.755 245 159 8 2 239 99 332 1.90e-12 67.4
MsG0580024169.01.T01 MTR_2g021150 25.540 278 170 13 2 267 86 338 2.87e-12 67.0
MsG0580024169.01.T01 MTR_3g006500 27.805 205 114 8 36 238 128 300 3.50e-12 66.6
MsG0580024169.01.T01 MTR_2g046860 26.394 269 154 15 29 278 5 248 3.62e-12 66.2
MsG0580024169.01.T01 MTR_8g101580 25.926 270 153 13 29 275 127 372 4.63e-12 66.2
MsG0580024169.01.T01 MTR_1g054575 29.577 213 125 9 29 238 141 331 5.55e-12 66.6
MsG0580024169.01.T01 MTR_1g094210 25.869 259 152 11 29 277 150 378 7.19e-12 65.9
MsG0580024169.01.T01 MTR_1g094210 28.638 213 119 10 29 238 150 332 8.22e-12 65.5
MsG0580024169.01.T01 MTR_6g465360 38.938 113 53 6 2 100 134 244 1.06e-11 64.7
MsG0580024169.01.T01 MTR_2g046920 25.681 257 162 10 29 276 117 353 1.07e-11 65.1
MsG0580024169.01.T01 MTR_3g047540 47.761 67 31 3 118 184 6 68 1.23e-11 60.5
MsG0580024169.01.T01 MTR_3g024040 27.126 247 134 13 2 239 96 305 1.43e-11 64.7
MsG0580024169.01.T01 MTR_1g097330 25.000 260 164 11 30 278 106 345 1.61e-11 64.7
MsG0580024169.01.T01 MTR_3g007330 26.244 221 126 11 33 242 137 331 2.21e-11 64.3
MsG0580024169.01.T01 MTR_4g061340 26.754 228 120 11 33 241 119 318 2.58e-11 63.9
MsG0580024169.01.T01 MTR_3g030240 26.991 226 127 10 13 238 121 308 2.78e-11 63.9
MsG0580024169.01.T01 MTR_3g014570 26.721 247 145 8 2 239 97 316 3.17e-11 63.9
MsG0580024169.01.T01 MTR_5g022420 24.913 289 167 12 29 297 118 376 3.82e-11 63.5
MsG0580024169.01.T01 MTR_5g097210 25.430 291 183 15 20 299 89 356 3.82e-11 63.5
MsG0580024169.01.T01 MTR_3g014540 26.531 245 146 11 2 238 97 315 4.02e-11 63.5
MsG0580024169.01.T01 MTR_4g023070 22.819 298 194 10 20 299 84 363 4.02e-11 63.5
MsG0580024169.01.T01 MTR_7g077910 25.403 248 127 13 27 242 30 251 4.81e-11 63.2
MsG0580024169.01.T01 MTR_7g407070 27.869 244 163 9 2 238 100 337 5.04e-11 63.2
MsG0580024169.01.T01 MTR_2g021190 27.273 242 149 13 2 238 89 308 5.59e-11 63.2
MsG0580024169.01.T01 MTR_7g009265 24.232 293 157 14 31 278 31 303 5.89e-11 62.8
MsG0580024169.01.T01 MTR_2g046900 25.379 264 166 13 29 278 121 367 7.77e-11 62.8
MsG0580024169.01.T01 MTR_3g006670 25.191 262 167 9 2 257 117 355 8.40e-11 62.8
MsG0580024169.01.T01 MTR_2g028160 25.253 198 130 7 49 238 130 317 8.69e-11 62.8
MsG0580024169.01.T01 MTR_4g023120 21.967 305 188 10 20 299 84 363 8.80e-11 62.4
MsG0580024169.01.T01 MTR_6g065980 27.586 203 118 8 36 238 113 286 9.55e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024169.01.T01 AT4G12560 24.444 270 177 11 31 281 91 352 6.57e-16 77.8
MsG0580024169.01.T01 AT4G12560 24.444 270 177 11 31 281 91 352 6.57e-16 77.8
MsG0580024169.01.T01 AT4G12560 24.444 270 177 11 31 281 91 352 6.57e-16 77.8
MsG0580024169.01.T01 AT3G06240 26.772 254 163 9 31 280 165 399 1.44e-15 77.0
MsG0580024169.01.T01 AT4G22390 25.733 307 182 14 5 281 59 349 6.99e-13 68.9
MsG0580024169.01.T01 AT4G22390 25.733 307 182 14 5 281 59 349 8.31e-13 68.6

Find 56 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTACACATATCAATTT+TGG 0.078909 5:-1527622 MsG0580024169.01.T01:CDS
TCTTTGTATTGAACGTAATT+TGG 0.153344 5:-1528156 MsG0580024169.01.T01:CDS
AACACGTGATGAGGTTTATT+TGG 0.216600 5:-1527787 MsG0580024169.01.T01:CDS
ATTGTCTAAAAGAAGATTCT+TGG 0.253194 5:-1527908 MsG0580024169.01.T01:CDS
GCATCCTCTAGAAATGAATT+TGG 0.299212 5:+1528215 None:intergenic
AGACACTTAGACGTGTTAAA+TGG 0.301641 5:-1527681 MsG0580024169.01.T01:CDS
TGGATGAAATAGTTAGTCTA+TGG 0.305139 5:-1528136 MsG0580024169.01.T01:CDS
ACTCTTCATTGTTGGATTGT+TGG 0.346803 5:-1527568 MsG0580024169.01.T01:CDS
TACCACAAGATGGAGAGATT+TGG 0.361943 5:-1527968 MsG0580024169.01.T01:CDS
AAAATAGAGTCAAACTTGAT+TGG 0.381650 5:-1528238 MsG0580024169.01.T01:CDS
TGGACCAAACTCTTCATTGT+TGG 0.393113 5:-1527576 MsG0580024169.01.T01:CDS
GACGTGTTAAATGGATCAAT+TGG 0.398422 5:-1527672 MsG0580024169.01.T01:CDS
AATGTCTTTGACTTCCTTAG+TGG 0.399002 5:+1528106 None:intergenic
ACTTCAAGACGGTAATTTGT+AGG 0.407483 5:+1527861 None:intergenic
CCATGTTACAGATGACTATA+AGG 0.418884 5:-1528012 MsG0580024169.01.T01:CDS
CAATCCAACAATGAAGAGTT+TGG 0.421007 5:+1527572 None:intergenic
GATTGTGTTGAGCATCCTAT+TGG 0.421852 5:-1527546 MsG0580024169.01.T01:CDS
CTTTGACTTCCTTAGTGGAT+GGG 0.434737 5:+1528111 None:intergenic
TCTTTGACTTCCTTAGTGGA+TGG 0.437376 5:+1528110 None:intergenic
CCCTTCTTACCAACTCCAAT+AGG 0.449945 5:+1527531 None:intergenic
AACATATATACCTTCAATCA+TGG 0.450389 5:-1527730 MsG0580024169.01.T01:CDS
TCATAAGCAAAACGATTTGA+AGG 0.459927 5:+1528083 None:intergenic
AAGTCGGAGTGACGGAATCT+TGG 0.461269 5:-1527596 MsG0580024169.01.T01:CDS
TCTATTTATGGTTGTGTCAA+CGG 0.463750 5:-1528182 MsG0580024169.01.T01:CDS
CACGTCTAAGTGTCTAAACA+TGG 0.493876 5:+1527689 None:intergenic
TCCTATTGGAGTTGGTAAGA+AGG 0.507304 5:-1527532 MsG0580024169.01.T01:CDS
TGTTAAATGGATCAATTGGA+TGG 0.522177 5:-1527668 MsG0580024169.01.T01:CDS
ACTCAAAGAATTGAAGAGCT+TGG 0.530840 5:-1527456 MsG0580024169.01.T01:CDS
TTCCAAATCTCTCCATCTTG+TGG 0.541780 5:+1527966 None:intergenic
CCTATTGGAGTTGGTAAGAA+GGG 0.544074 5:-1527531 MsG0580024169.01.T01:CDS
ACAAATTACCGTCTTGAAGT+AGG 0.548038 5:-1527858 MsG0580024169.01.T01:CDS
AAAGTGCACATCCGTATGGC+CGG 0.548539 5:-1527428 MsG0580024169.01.T01:CDS
AAAATCATTATCCGGCCATA+CGG 0.550338 5:+1527417 None:intergenic
ACATGGATGAAGTGTGTCAC+TGG 0.551475 5:-1527824 MsG0580024169.01.T01:CDS
AGTAGGTGTTCGAGTGTACA+TGG 0.565037 5:-1527841 MsG0580024169.01.T01:CDS
TCAACATCATCCATGATTGA+AGG 0.566072 5:+1527720 None:intergenic
ATCATGGATGATGTTGACTC+TGG 0.569661 5:-1527714 MsG0580024169.01.T01:CDS
GTTGAGCATCCTATTGGAGT+TGG 0.573333 5:-1527540 MsG0580024169.01.T01:CDS
TTTGGGTGAAGTCGGAGTGA+CGG 0.580523 5:-1527604 MsG0580024169.01.T01:CDS
TCTATGGAACCCATCCACTA+AGG 0.580935 5:-1528120 MsG0580024169.01.T01:CDS
GGATGAAGTGTGTCACTGGT+GGG 0.582757 5:-1527820 MsG0580024169.01.T01:CDS
TTGGCCAAATTCATTTCTAG+AGG 0.584636 5:-1528219 MsG0580024169.01.T01:CDS
CCTTATAGTCATCTGTAACA+TGG 0.586497 5:+1528012 None:intergenic
TCAAAGCAAAACACGTGATG+AGG 0.593399 5:-1527796 MsG0580024169.01.T01:CDS
ATGAAAAGTGCACATCCGTA+TGG 0.595327 5:-1527432 MsG0580024169.01.T01:CDS
CAATATATCTCCCACGAGGT+GGG 0.606557 5:+1527927 None:intergenic
TGGATGAAGTGTGTCACTGG+TGG 0.627578 5:-1527821 MsG0580024169.01.T01:CDS
ACAATATATCTCCCACGAGG+TGG 0.628742 5:+1527926 None:intergenic
GATGAAGTGTGTCACTGGTG+GGG 0.635810 5:-1527819 MsG0580024169.01.T01:CDS
TACGTCATCATCCCACCTCG+TGG 0.644410 5:-1527938 MsG0580024169.01.T01:CDS
CTCGAACACCTACTTCAAGA+CGG 0.664259 5:+1527850 None:intergenic
ACGTCTAAGTGTCTAAACAT+GGG 0.670833 5:+1527690 None:intergenic
ACGTCATCATCCCACCTCGT+GGG 0.688256 5:-1527937 MsG0580024169.01.T01:CDS
AATCCATGAAGAGAAAACAC+AGG 0.694744 5:+1528044 None:intergenic
GTCATTTGACTTGAGCAGTG+AGG 0.725114 5:-1527763 MsG0580024169.01.T01:CDS
TAGACAATATATCTCCCACG+AGG 0.787613 5:+1527923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGATGAACTAATT+TGG - Chr5:1528170-1528189 MsG0580024169.01.T01:CDS 15.0%
!! TTTCCTTAAAAATCATTATC+CGG + Chr5:1528255-1528274 None:intergenic 20.0%
!!! ACTTTACACATATCAATTTT+GGG - Chr5:1528040-1528059 MsG0580024169.01.T01:CDS 20.0%
!!! TACTTTACACATATCAATTT+TGG - Chr5:1528039-1528058 MsG0580024169.01.T01:CDS 20.0%
! AAAATAGAGTCAAACTTGAT+TGG - Chr5:1527423-1527442 MsG0580024169.01.T01:CDS 25.0%
! AACATATATACCTTCAATCA+TGG - Chr5:1527931-1527950 MsG0580024169.01.T01:CDS 25.0%
! ATTGTCTAAAAGAAGATTCT+TGG - Chr5:1527753-1527772 MsG0580024169.01.T01:CDS 25.0%
! TCTTTGTATTGAACGTAATT+TGG - Chr5:1527505-1527524 MsG0580024169.01.T01:CDS 25.0%
!! TGCTTATGAATCTTTTCATA+GGG - Chr5:1527592-1527611 MsG0580024169.01.T01:CDS 25.0%
!! TTGCTTATGAATCTTTTCAT+AGG - Chr5:1527591-1527610 MsG0580024169.01.T01:CDS 25.0%
!!! GCATGCTATTTTTCTATTTA+TGG - Chr5:1527467-1527486 MsG0580024169.01.T01:CDS 25.0%
TCATAAGCAAAACGATTTGA+AGG + Chr5:1527581-1527600 None:intergenic 30.0%
TCTATTTATGGTTGTGTCAA+CGG - Chr5:1527479-1527498 MsG0580024169.01.T01:CDS 30.0%
TGTTAAATGGATCAATTGGA+TGG - Chr5:1527993-1528012 MsG0580024169.01.T01:CDS 30.0%
! ATAACTCTTTTACCACAAGA+TGG - Chr5:1527683-1527702 MsG0580024169.01.T01:CDS 30.0%
! TGGATGAAATAGTTAGTCTA+TGG - Chr5:1527525-1527544 MsG0580024169.01.T01:CDS 30.0%
!! ATATCAATTTTGGGTGAAGT+CGG - Chr5:1528049-1528068 MsG0580024169.01.T01:CDS 30.0%
AAAATCATTATCCGGCCATA+CGG + Chr5:1528247-1528266 None:intergenic 35.0%
AACACGTGATGAGGTTTATT+TGG - Chr5:1527874-1527893 MsG0580024169.01.T01:CDS 35.0%
AATCCATGAAGAGAAAACAC+AGG + Chr5:1527620-1527639 None:intergenic 35.0%
ACAAATTACCGTCTTGAAGT+AGG - Chr5:1527803-1527822 MsG0580024169.01.T01:CDS 35.0%
ACGTCTAAGTGTCTAAACAT+GGG + Chr5:1527974-1527993 None:intergenic 35.0%
ACTCAAAGAATTGAAGAGCT+TGG - Chr5:1528205-1528224 MsG0580024169.01.T01:CDS 35.0%
ACTCTTCATTGTTGGATTGT+TGG - Chr5:1528093-1528112 MsG0580024169.01.T01:CDS 35.0%
AGACACTTAGACGTGTTAAA+TGG - Chr5:1527980-1527999 MsG0580024169.01.T01:CDS 35.0%
CAATCCAACAATGAAGAGTT+TGG + Chr5:1528092-1528111 None:intergenic 35.0%
CCATGTTACAGATGACTATA+AGG - Chr5:1527649-1527668 MsG0580024169.01.T01:CDS 35.0%
CCTTATAGTCATCTGTAACA+TGG + Chr5:1527652-1527671 None:intergenic 35.0%
GACGTGTTAAATGGATCAAT+TGG - Chr5:1527989-1528008 MsG0580024169.01.T01:CDS 35.0%
TCAACATCATCCATGATTGA+AGG + Chr5:1527944-1527963 None:intergenic 35.0%
! AATGTCTTTGACTTCCTTAG+TGG + Chr5:1527558-1527577 None:intergenic 35.0%
! ACTTCAAGACGGTAATTTGT+AGG + Chr5:1527803-1527822 None:intergenic 35.0%
! GCATCCTCTAGAAATGAATT+TGG + Chr5:1527449-1527468 None:intergenic 35.0%
! GTGTTTTCTCTTCATGGATT+TGG - Chr5:1527620-1527639 MsG0580024169.01.T01:CDS 35.0%
! TGGCCGGATAATGATTTTTA+AGG - Chr5:1528249-1528268 MsG0580024169.01.T01:CDS 35.0%
! TTGGCCAAATTCATTTCTAG+AGG - Chr5:1527442-1527461 MsG0580024169.01.T01:CDS 35.0%
CACGTCTAAGTGTCTAAACA+TGG + Chr5:1527975-1527994 None:intergenic 40.0%
GATTGTGTTGAGCATCCTAT+TGG - Chr5:1528115-1528134 MsG0580024169.01.T01:CDS 40.0%
TACCACAAGATGGAGAGATT+TGG - Chr5:1527693-1527712 MsG0580024169.01.T01:CDS 40.0%
TAGACAATATATCTCCCACG+AGG + Chr5:1527741-1527760 None:intergenic 40.0%
TCAAAGCAAAACACGTGATG+AGG - Chr5:1527865-1527884 MsG0580024169.01.T01:CDS 40.0%
TGGACCAAACTCTTCATTGT+TGG - Chr5:1528085-1528104 MsG0580024169.01.T01:CDS 40.0%
TTCCAAATCTCTCCATCTTG+TGG + Chr5:1527698-1527717 None:intergenic 40.0%
! ATGAAAAGTGCACATCCGTA+TGG - Chr5:1528229-1528248 MsG0580024169.01.T01:CDS 40.0%
! CTTTGACTTCCTTAGTGGAT+GGG + Chr5:1527553-1527572 None:intergenic 40.0%
! GATCCTGTGTTTTCTCTTCA+TGG - Chr5:1527614-1527633 MsG0580024169.01.T01:CDS 40.0%
! TCTTTGACTTCCTTAGTGGA+TGG + Chr5:1527554-1527573 None:intergenic 40.0%
!! ATCATGGATGATGTTGACTC+TGG - Chr5:1527947-1527966 MsG0580024169.01.T01:CDS 40.0%
!! CCTATTGGAGTTGGTAAGAA+GGG - Chr5:1528130-1528149 MsG0580024169.01.T01:CDS 40.0%
!! TCCTATTGGAGTTGGTAAGA+AGG - Chr5:1528129-1528148 MsG0580024169.01.T01:CDS 40.0%
ACAATATATCTCCCACGAGG+TGG + Chr5:1527738-1527757 None:intergenic 45.0%
ACATGGATGAAGTGTGTCAC+TGG - Chr5:1527837-1527856 MsG0580024169.01.T01:CDS 45.0%
AGTAGGTGTTCGAGTGTACA+TGG - Chr5:1527820-1527839 MsG0580024169.01.T01:CDS 45.0%
CAATATATCTCCCACGAGGT+GGG + Chr5:1527737-1527756 None:intergenic 45.0%
CCCTTCTTACCAACTCCAAT+AGG + Chr5:1528133-1528152 None:intergenic 45.0%
CTCGAACACCTACTTCAAGA+CGG + Chr5:1527814-1527833 None:intergenic 45.0%
GTTGAGCATCCTATTGGAGT+TGG - Chr5:1528121-1528140 MsG0580024169.01.T01:CDS 45.0%
TCTATGGAACCCATCCACTA+AGG - Chr5:1527541-1527560 MsG0580024169.01.T01:CDS 45.0%
!! GTCATTTGACTTGAGCAGTG+AGG - Chr5:1527898-1527917 MsG0580024169.01.T01:CDS 45.0%
AAAGTGCACATCCGTATGGC+CGG - Chr5:1528233-1528252 MsG0580024169.01.T01:CDS 50.0%
TTTGGGTGAAGTCGGAGTGA+CGG - Chr5:1528057-1528076 MsG0580024169.01.T01:CDS 50.0%
! AAGTCGGAGTGACGGAATCT+TGG - Chr5:1528065-1528084 MsG0580024169.01.T01:CDS 50.0%
! GATGAAGTGTGTCACTGGTG+GGG - Chr5:1527842-1527861 MsG0580024169.01.T01:CDS 50.0%
! GGATGAAGTGTGTCACTGGT+GGG - Chr5:1527841-1527860 MsG0580024169.01.T01:CDS 50.0%
! TGGATGAAGTGTGTCACTGG+TGG - Chr5:1527840-1527859 MsG0580024169.01.T01:CDS 50.0%
ACGTCATCATCCCACCTCGT+GGG - Chr5:1527724-1527743 MsG0580024169.01.T01:CDS 55.0%
TACGTCATCATCCCACCTCG+TGG - Chr5:1527723-1527742 MsG0580024169.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1527392 1528291 1527392 ID=MsG0580024169.01;Name=MsG0580024169.01
Chr5 mRNA 1527392 1528291 1527392 ID=MsG0580024169.01.T01;Parent=MsG0580024169.01;Name=MsG0580024169.01.T01;_AED=0.20;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|299
Chr5 exon 1527392 1528291 1527392 ID=MsG0580024169.01.T01:exon:23434;Parent=MsG0580024169.01.T01
Chr5 CDS 1527392 1528291 1527392 ID=MsG0580024169.01.T01:cds;Parent=MsG0580024169.01.T01
Gene Sequence

>MsG0580024169.01.T01

ATGTTGCACTCTCTTTTTGGCGAGAATATTGAAAATAGAGTCAAACTTGATTGGCCAAATTCATTTCTAGAGGATGCATGCTATTTTTCTATTTATGGTTGTGTCAACGGCATTCTTTGTATTGAACGTAATTTGGATGAAATAGTTAGTCTATGGAACCCATCCACTAAGGAAGTCAAAGACATTCCTTCAAATCGTTTTGCTTATGAATCTTTTCATAGGGATCCTGTGTTTTCTCTTCATGGATTTGGTTATGACCATGTTACAGATGACTATAAGGTGATTCGACACATAACTCTTTTACCACAAGATGGAGAGATTTGGAAAGACGTACGTCATCATCCCACCTCGTGGGAGATATATTGTCTAAAAGAAGATTCTTGGAGAAAAGTTGATGCAGTAGATATTCCTACAAATTACCGTCTTGAAGTAGGTGTTCGAGTGTACATGGATGAAGTGTGTCACTGGTGGGGTCAAAGCAAAACACGTGATGAGGTTTATTTGGTGTCATTTGACTTGAGCAGTGAGGTATTTGTGAAAACATATATACCTTCAATCATGGATGATGTTGACTCTGGACCCATGTTTAGACACTTAGACGTGTTAAATGGATCAATTGGATGGATTTTAAATTATACAGAGACAGCTACTTTACACATATCAATTTTGGGTGAAGTCGGAGTGACGGAATCTTGGACCAAACTCTTCATTGTTGGATTGTTGGATTGTGTTGAGCATCCTATTGGAGTTGGTAAGAAGGGAGATATATTCTTTAGAAAAAAAAATGATGAACTAATTTGGTTTAATTTAAGCACTCAAAGAATTGAAGAGCTTGGTATGAAAAGTGCACATCCGTATGGCCGGATAATGATTTTTAAGGAAAGCATTCTACCTATTTAG
Protein sequence

>MsG0580024169.01.T01

MLHSLFGENIENRVKLDWPNSFLEDACYFSIYGCVNGILCIERNLDEIVSLWNPSTKEVKDIPSNRFAYESFHRDPVFSLHGFGYDHVTDDYKVIRHITLLPQDGEIWKDVRHHPTSWEIYCLKEDSWRKVDAVDIPTNYRLEVGVRVYMDEVCHWWGQSKTRDEVYLVSFDLSSEVFVKTYIPSIMDDVDSGPMFRHLDVLNGSIGWILNYTETATLHISILGEVGVTESWTKLFIVGLLDCVEHPIGVGKKGDIFFRKKNDELIWFNLSTQRIEELGMKSAHPYGRIMIFKESILPI*