AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012904.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012904.01.T01 MTR_5g096900 48.230 226 75 9 9 233 6 190 9.93e-48 161
MsG0380012904.01.T01 MTR_5g097820 43.103 232 87 6 4 233 10 198 4.33e-46 155
MsG0380012904.01.T01 MTR_5g037680 42.920 226 87 4 11 234 1 186 9.23e-44 154
MsG0380012904.01.T01 MTR_7g017130 37.449 243 102 3 1 241 1 195 1.31e-43 152
MsG0380012904.01.T01 MTR_7g017170 37.449 243 102 3 1 241 1 195 1.36e-43 152
MsG0380012904.01.T01 MTR_8g012090 42.324 241 68 6 3 232 4 184 5.88e-42 146
MsG0380012904.01.T01 MTR_5g037190 38.174 241 99 3 6 244 4 196 7.81e-42 144
MsG0380012904.01.T01 MTR_5g069390 39.916 238 96 5 2 233 10 206 9.53e-42 149
MsG0380012904.01.T01 MTR_5g059430 39.918 243 95 6 2 233 10 212 1.48e-41 147
MsG0380012904.01.T01 MTR_2g038680 42.387 243 83 6 4 240 5 196 2.12e-41 147
MsG0380012904.01.T01 MTR_5g096070 41.121 214 48 5 15 227 23 159 2.15e-40 137
MsG0380012904.01.T01 MTR_7g017040 42.081 221 75 3 16 234 14 183 2.16e-40 144
MsG0380012904.01.T01 MTR_8g013000 38.158 228 89 4 16 240 8 186 7.21e-39 140
MsG0380012904.01.T01 MTR_0129s0070 39.076 238 89 7 5 239 4 188 3.09e-38 138
MsG0380012904.01.T01 MTR_2g022000 40.517 232 83 5 15 238 13 197 5.82e-38 138
MsG0380012904.01.T01 MTR_5g096910 39.916 238 91 7 3 234 4 195 3.54e-37 135
MsG0380012904.01.T01 MTR_7g069550 36.207 232 89 6 15 240 11 189 8.60e-37 134
MsG0380012904.01.T01 MTR_5g072060 38.462 234 74 6 15 238 3 176 1.82e-36 136
MsG0380012904.01.T01 MTR_8g073570 39.286 224 80 7 9 230 1 170 4.74e-36 126
MsG0380012904.01.T01 MTR_4g102410 40.693 231 71 7 15 234 58 233 6.53e-36 133
MsG0380012904.01.T01 MTR_1g007410 37.449 243 91 5 5 240 9 197 1.12e-35 131
MsG0380012904.01.T01 MTR_2g034700 39.035 228 87 6 14 238 10 188 1.39e-35 130
MsG0380012904.01.T01 MTR_4g117550 39.831 236 85 7 9 239 8 191 1.80e-35 130
MsG0380012904.01.T01 MTR_5g096630 39.738 229 80 5 17 238 17 194 3.38e-35 130
MsG0380012904.01.T01 MTR_5g097330 39.655 232 92 8 15 241 13 201 3.80e-35 130
MsG0380012904.01.T01 MTR_4g055820 37.712 236 92 5 6 238 2 185 1.59e-34 127
MsG0380012904.01.T01 MTR_6g465360 36.145 249 88 8 4 234 45 240 7.09e-34 124
MsG0380012904.01.T01 MTR_0129s0120 37.815 238 92 7 5 239 4 188 8.14e-34 126
MsG0380012904.01.T01 MTR_5g049560 40.000 215 83 5 55 263 1 175 1.02e-33 123
MsG0380012904.01.T01 MTR_8g033090 34.818 247 99 6 1 242 1 190 1.51e-33 126
MsG0380012904.01.T01 MTR_8g063440 39.286 224 77 7 15 234 9 177 2.24e-33 125
MsG0380012904.01.T01 MTR_8g032980 37.118 229 85 6 13 238 11 183 3.08e-33 125
MsG0380012904.01.T01 MTR_2g021800 38.428 229 85 5 15 234 13 194 7.54e-33 124
MsG0380012904.01.T01 MTR_8g033140 35.772 246 101 7 2 242 4 197 8.16e-33 124
MsG0380012904.01.T01 MTR_5g024260 35.060 251 102 6 1 243 5 202 9.69e-33 124
MsG0380012904.01.T01 MTR_8g041270 38.596 228 87 6 16 240 13 190 1.09e-32 124
MsG0380012904.01.T01 MTR_0129s0050 38.793 232 76 7 15 238 11 184 1.61e-32 123
MsG0380012904.01.T01 MTR_5g075370 39.837 246 68 11 13 240 3 186 2.76e-32 125
MsG0380012904.01.T01 MTR_8g033110 34.274 248 99 6 1 242 1 190 2.94e-32 122
MsG0380012904.01.T01 MTR_5g074850 41.224 245 64 13 4 233 24 203 5.00e-32 124
MsG0380012904.01.T01 MTR_1g076810 36.032 247 96 6 1 240 4 195 8.55e-32 124
MsG0380012904.01.T01 MTR_7g016930 36.820 239 82 3 15 251 13 184 9.36e-32 120
MsG0380012904.01.T01 MTR_8g464770 39.013 223 82 6 15 234 9 180 9.47e-32 120
MsG0380012904.01.T01 MTR_1g053510 37.551 245 97 8 1 242 1 192 1.42e-31 120
MsG0380012904.01.T01 MTR_8g039500 35.683 227 84 7 15 238 9 176 1.51e-31 119
MsG0380012904.01.T01 MTR_8g046310 37.931 232 91 8 4 234 2 181 2.08e-31 119
MsG0380012904.01.T01 MTR_7g079640 36.161 224 84 5 17 235 12 181 2.51e-31 119
MsG0380012904.01.T01 MTR_5g097220 37.143 245 80 7 6 236 4 188 3.45e-31 119
MsG0380012904.01.T01 MTR_3g011120 36.170 235 93 7 8 238 4 185 3.59e-31 119
MsG0380012904.01.T01 MTR_6g080680 36.000 250 78 8 15 242 16 205 7.05e-31 119
MsG0380012904.01.T01 MTR_5g097650 39.091 220 61 7 8 220 5 158 7.84e-31 112
MsG0380012904.01.T01 MTR_7g111700 37.860 243 76 9 12 241 9 189 1.79e-30 117
MsG0380012904.01.T01 MTR_5g097350 35.833 240 94 8 27 260 25 210 1.86e-30 117
MsG0380012904.01.T01 MTR_6g070880 34.914 232 83 7 17 234 31 208 2.28e-30 114
MsG0380012904.01.T01 MTR_6g071420 34.914 232 83 7 17 234 31 208 2.28e-30 114
MsG0380012904.01.T01 MTR_0831s0010 36.364 242 92 7 4 240 37 221 2.54e-30 117
MsG0380012904.01.T01 MTR_2g066150 34.348 230 87 8 17 242 11 180 3.70e-30 116
MsG0380012904.01.T01 MTR_2g021950 36.036 222 90 5 16 234 14 186 1.84e-29 114
MsG0380012904.01.T01 MTR_0134s0060 35.802 243 85 8 10 234 1 190 2.11e-29 115
MsG0380012904.01.T01 MTR_5g086590 78.689 61 13 0 181 241 5 65 3.50e-29 110
MsG0380012904.01.T01 MTR_4g028680 37.247 247 85 10 1 233 1 191 4.17e-29 114
MsG0380012904.01.T01 MTR_1g007450 38.288 222 82 8 16 234 10 179 6.35e-29 114
MsG0380012904.01.T01 MTR_8g018110 32.540 252 97 8 1 242 1 189 6.95e-29 113
MsG0380012904.01.T01 MTR_4g028750 35.897 234 84 8 13 233 11 191 7.51e-29 113
MsG0380012904.01.T01 MTR_4g028660 32.601 273 100 10 1 259 1 203 1.18e-28 112
MsG0380012904.01.T01 MTR_4g027450 32.601 273 100 10 1 259 1 203 1.18e-28 112
MsG0380012904.01.T01 MTR_5g097680 35.223 247 84 6 15 233 14 212 1.48e-28 112
MsG0380012904.01.T01 MTR_2g064950 34.483 232 94 4 9 240 1 174 1.58e-28 112
MsG0380012904.01.T01 MTR_4g014370 36.000 250 79 9 15 234 8 206 2.42e-28 112
MsG0380012904.01.T01 MTR_2g066200 34.061 229 94 7 15 238 9 185 3.90e-28 111
MsG0380012904.01.T01 MTR_7g104710 38.537 205 65 8 7 205 3 152 4.08e-28 110
MsG0380012904.01.T01 MTR_8g046200 35.656 244 107 8 1 242 1 196 5.03e-28 111
MsG0380012904.01.T01 MTR_6g079810 36.929 241 85 7 7 234 59 245 7.96e-28 111
MsG0380012904.01.T01 MTR_2g104340 36.889 225 74 7 16 234 12 174 1.39e-27 109
MsG0380012904.01.T01 MTR_6g086825 36.100 241 81 8 14 239 66 248 1.47e-27 110
MsG0380012904.01.T01 MTR_6g461660 37.500 240 87 8 6 234 7 194 1.68e-27 109
MsG0380012904.01.T01 MTR_2g104280 35.874 223 88 7 16 234 12 183 8.35e-27 107
MsG0380012904.01.T01 MTR_0054s0090 34.363 259 96 9 2 245 5 204 1.20e-26 107
MsG0380012904.01.T01 MTR_8g046220 35.391 243 96 6 1 242 1 183 1.22e-26 107
MsG0380012904.01.T01 MTR_2g021770 34.188 234 84 6 15 234 9 186 2.36e-26 106
MsG0380012904.01.T01 MTR_2g065860 31.276 243 98 6 17 245 11 198 4.49e-26 105
MsG0380012904.01.T01 MTR_2g065840 30.638 235 101 5 22 245 16 199 1.17e-25 104
MsG0380012904.01.T01 MTR_6g090180 33.750 240 99 7 15 244 44 233 1.25e-25 105
MsG0380012904.01.T01 MTR_5g092850 33.202 253 92 10 2 242 4 191 1.69e-25 104
MsG0380012904.01.T01 MTR_2g066170 31.579 228 99 5 15 238 9 183 2.54e-25 103
MsG0380012904.01.T01 MTR_1g050308 32.589 224 98 6 17 238 33 205 6.44e-25 101
MsG0380012904.01.T01 MTR_8g063330 33.906 233 85 8 13 234 9 183 6.46e-25 103
MsG0380012904.01.T01 MTR_6g079770 35.270 241 82 9 16 238 15 199 6.82e-25 102
MsG0380012904.01.T01 MTR_0054s0100 34.413 247 90 9 2 233 5 194 8.63e-25 102
MsG0380012904.01.T01 MTR_4g130330 35.593 236 78 9 14 233 3 180 2.87e-24 100
MsG0380012904.01.T01 MTR_8g064790 34.389 221 88 7 15 231 12 179 5.47e-24 99.0
MsG0380012904.01.T01 MTR_5g091140 35.111 225 76 6 17 240 47 202 5.90e-24 100
MsG0380012904.01.T01 MTR_4g028510 34.137 249 92 10 1 233 1 193 7.41e-24 100
MsG0380012904.01.T01 MTR_1g007430 35.111 225 80 9 29 244 7 174 2.51e-23 97.1
MsG0380012904.01.T01 MTR_6g478230 34.167 240 96 8 9 239 18 204 3.27e-23 98.2
MsG0380012904.01.T01 MTR_2g104260 36.957 230 76 8 16 234 12 183 5.44e-23 95.5
MsG0380012904.01.T01 MTR_1g098180 50.000 110 44 3 2 109 4 104 8.51e-23 96.3
MsG0380012904.01.T01 MTR_8g041440 51.000 100 26 1 15 114 12 88 9.72e-23 90.5
MsG0380012904.01.T01 MTR_8g467670 32.174 230 101 6 14 239 10 188 1.12e-22 96.3
MsG0380012904.01.T01 MTR_8g064890 33.884 242 104 8 1 238 1 190 1.53e-21 93.2
MsG0380012904.01.T01 MTR_4g014370 43.056 144 63 5 15 154 19 147 5.30e-21 90.9
MsG0380012904.01.T01 MTR_3g019290 46.364 110 50 3 1 109 1 102 1.22e-19 84.0
MsG0380012904.01.T01 MTR_5g094350 53.763 93 39 2 15 107 10 98 1.62e-19 85.9
MsG0380012904.01.T01 MTR_8g036970 51.042 96 33 2 22 112 2 88 7.38e-19 85.5
MsG0380012904.01.T01 MTR_6g090250 32.420 219 77 9 36 234 29 196 7.53e-17 80.1
MsG0380012904.01.T01 MTR_1g115205 43.103 116 41 3 11 123 22 115 3.09e-16 76.6
MsG0380012904.01.T01 MTR_3g047580 51.562 64 31 0 15 78 11 74 7.90e-16 72.4
MsG0380012904.01.T01 MTR_6g087660 44.444 81 43 1 1 79 1 81 3.34e-13 67.0
MsG0380012904.01.T01 MTR_5g092860 42.169 83 37 1 36 118 20 91 7.34e-13 68.2
MsG0380012904.01.T01 MTR_8g041490 41.000 100 27 2 15 114 12 79 2.23e-12 62.4
MsG0380012904.01.T01 MTR_5g086780 67.347 49 13 1 16 61 14 62 4.58e-12 64.3
MsG0380012904.01.T01 MTR_8g063310 26.222 225 99 9 15 234 19 181 2.02e-11 63.9
MsG0380012904.01.T01 MTR_6g090260 58.182 55 22 1 14 67 16 70 2.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATCTGTATTCTCTTTC+TGG 0.078612 3:+26647627 MsG0380012904.01.T01:CDS
GTGTGCCATCTGATCAATTT+TGG 0.179842 3:+26648086 MsG0380012904.01.T01:CDS
CACACGATTAGGTTAAATTT+TGG 0.190292 3:-26648068 None:intergenic
TGCCCGAGAATAATCCTTCT+TGG 0.252645 3:+26647964 MsG0380012904.01.T01:CDS
AATACAGATAATAATAAATT+TGG 0.261393 3:-26647617 None:intergenic
AAACGCTTCAAAGATTTAAA+AGG 0.279731 3:-26647441 None:intergenic
TGATCAGATGGCACACGATT+AGG 0.332494 3:-26648079 None:intergenic
CGCATCGTCAAATGTTGTTC+AGG 0.342248 3:+26647359 MsG0380012904.01.T01:CDS
TAATCCTTCTTGGTATGTTT+CGG 0.353019 3:+26647974 MsG0380012904.01.T01:CDS
AACAAGGGTTGTCAAATAAG+AGG 0.367149 3:-26647488 None:intergenic
AGAATAGAGTCAAATTAGAT+TGG 0.387136 3:+26647661 MsG0380012904.01.T01:CDS
GGTATTCTTTGTCTAAAAGC+TGG 0.408632 3:+26647876 MsG0380012904.01.T01:CDS
TCATCATCATCCTCCTCATC+TGG 0.413338 3:-26647792 None:intergenic
CCATCATCATCCTCTTGAAA+TGG 0.419953 3:-26647822 None:intergenic
AAAGAATACCATTAAAACTA+AGG 0.435281 3:-26647863 None:intergenic
AGTGGTCTTCTCAAAACTAT+AGG 0.436461 3:-26647738 None:intergenic
AGTTTGAATTCGTTGGTAGT+TGG 0.439341 3:-26647933 None:intergenic
AATATCATCTGGTATATGAT+TGG 0.455802 3:-26647394 None:intergenic
AAATTTGGCGTCTCTCTTGT+GGG 0.462152 3:-26647602 None:intergenic
ACATCCTCGGTCAAAACCTT+TGG 0.464888 3:-26647684 None:intergenic
ATAGCCTACGCAGTAACTCT+TGG 0.465302 3:+26648116 MsG0380012904.01.T01:CDS
CCATTTCAAGAGGATGATGA+TGG 0.471596 3:+26647822 MsG0380012904.01.T01:CDS
TCGGCCGATCATTATCAAAT+CGG 0.473206 3:+26647993 MsG0380012904.01.T01:CDS
TAAATTTGGCGTCTCTCTTG+TGG 0.473870 3:-26647603 None:intergenic
TGTCTAAAAGCTGGATTCTA+CGG 0.481457 3:+26647885 MsG0380012904.01.T01:CDS
TGTATTCTCTTTCTGGTGAG+AGG 0.484321 3:+26647634 MsG0380012904.01.T01:CDS
GGATGTCTATCGACTTCAAA+AGG 0.503568 3:+26647701 MsG0380012904.01.T01:CDS
AGGAATGAGTTTGAATTCGT+TGG 0.503942 3:-26647940 None:intergenic
ATACCAAGAAGGATTATTCT+CGG 0.504259 3:-26647967 None:intergenic
CATCATCTTCTCTAAGATGT+AGG 0.507693 3:-26647578 None:intergenic
ATCTCCCAAAATTGATCAGA+TGG 0.520160 3:-26648091 None:intergenic
TTGAGAAGACCACTGGTACC+AGG 0.527358 3:+26647747 MsG0380012904.01.T01:CDS
ATAGAGAAGACAATATCATC+TGG 0.531548 3:-26647405 None:intergenic
AAGAATACCATTAAAACTAA+GGG 0.540846 3:-26647862 None:intergenic
TACCAAGAAGGATTATTCTC+GGG 0.545050 3:-26647966 None:intergenic
TTGAATGTGTACGTAAACCT+TGG 0.554355 3:+26647463 MsG0380012904.01.T01:CDS
GAAGGATTATTCTCGGGCAA+AGG 0.568316 3:-26647960 None:intergenic
TCCTCATCTGGATGAACATG+TGG 0.576591 3:-26647780 None:intergenic
CGGTACATAGTCATGAAACA+AGG 0.578691 3:-26647504 None:intergenic
ACAAGGGTTGTCAAATAAGA+GGG 0.590344 3:-26647487 None:intergenic
GCGAAACGAGAGTTGTATTG+TGG 0.596166 3:+26647907 MsG0380012904.01.T01:CDS
ACATGTGGAACAAACCATCC+TGG 0.600545 3:-26647765 None:intergenic
AGTCAAATTAGATTGGCCAA+AGG 0.619489 3:+26647668 MsG0380012904.01.T01:CDS
TCTTCCAAGAGTTACTGCGT+AGG 0.620101 3:-26648120 None:intergenic
ACATGTTCATCCAGATGAGG+AGG 0.621711 3:+26647782 MsG0380012904.01.T01:CDS
ATAACCGATTTGATAATGAT+CGG 0.624831 3:-26647997 None:intergenic
TCCACATGTTCATCCAGATG+AGG 0.627843 3:+26647779 MsG0380012904.01.T01:CDS
GTCTTCTCAAAACTATAGGA+CGG 0.629432 3:-26647734 None:intergenic
TTGAAGTCGATAGACATCCT+CGG 0.634485 3:-26647697 None:intergenic
TTGTCAAATAAGAGGGACCA+AGG 0.634881 3:-26647480 None:intergenic
CTGAACAACATTTGACGATG+CGG 0.637893 3:-26647358 None:intergenic
AGAATACCATTAAAACTAAG+GGG 0.648935 3:-26647861 None:intergenic
GAAGACCACTGGTACCAGGA+TGG 0.650110 3:+26647751 MsG0380012904.01.T01:CDS
ACAAACCATCCTGGTACCAG+TGG 0.656773 3:-26647756 None:intergenic
TCGGCCGAAACATACCAAGA+AGG 0.660122 3:-26647978 None:intergenic
TGACGACGGACCATTTCAAG+AGG 0.660532 3:+26647812 MsG0380012904.01.T01:CDS
GTATCATCATAATAAGAACA+TGG 0.689910 3:-26647546 None:intergenic
GAGGAGGATGATGATGACGA+CGG 0.692169 3:+26647798 MsG0380012904.01.T01:CDS
GGTACATAGTCATGAAACAA+GGG 0.721899 3:-26647503 None:intergenic
GTCTTGTTAAAAGATAGTTG+CGG 0.724702 3:-26647524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAGATAATAATAAATT+TGG - Chr3:26647620-26647639 None:intergenic 10.0%
!! AAAGAATACCATTAAAACTA+AGG - Chr3:26647866-26647885 None:intergenic 20.0%
!! AAGAATACCATTAAAACTAA+GGG - Chr3:26647865-26647884 None:intergenic 20.0%
! AAACGCTTCAAAGATTTAAA+AGG - Chr3:26647444-26647463 None:intergenic 25.0%
! AATATCATCTGGTATATGAT+TGG - Chr3:26647397-26647416 None:intergenic 25.0%
! AGAATACCATTAAAACTAAG+GGG - Chr3:26647864-26647883 None:intergenic 25.0%
! AGAATAGAGTCAAATTAGAT+TGG + Chr3:26647661-26647680 MsG0380012904.01.T01:CDS 25.0%
! GTATCATCATAATAAGAACA+TGG - Chr3:26647549-26647568 None:intergenic 25.0%
! TATTATCTGTATTCTCTTTC+TGG + Chr3:26647627-26647646 MsG0380012904.01.T01:CDS 25.0%
!!! ATAACCGATTTGATAATGAT+CGG - Chr3:26648000-26648019 None:intergenic 25.0%
ATACCAAGAAGGATTATTCT+CGG - Chr3:26647970-26647989 None:intergenic 30.0%
ATAGAGAAGACAATATCATC+TGG - Chr3:26647408-26647427 None:intergenic 30.0%
TAATCCTTCTTGGTATGTTT+CGG + Chr3:26647974-26647993 MsG0380012904.01.T01:CDS 30.0%
! CACACGATTAGGTTAAATTT+TGG - Chr3:26648071-26648090 None:intergenic 30.0%
! GTCTTGTTAAAAGATAGTTG+CGG - Chr3:26647527-26647546 None:intergenic 30.0%
AACAAGGGTTGTCAAATAAG+AGG - Chr3:26647491-26647510 None:intergenic 35.0%
ACAAGGGTTGTCAAATAAGA+GGG - Chr3:26647490-26647509 None:intergenic 35.0%
AGGAATGAGTTTGAATTCGT+TGG - Chr3:26647943-26647962 None:intergenic 35.0%
AGTGGTCTTCTCAAAACTAT+AGG - Chr3:26647741-26647760 None:intergenic 35.0%
ATCTCCCAAAATTGATCAGA+TGG - Chr3:26648094-26648113 None:intergenic 35.0%
GGTACATAGTCATGAAACAA+GGG - Chr3:26647506-26647525 None:intergenic 35.0%
GGTATTCTTTGTCTAAAAGC+TGG + Chr3:26647876-26647895 MsG0380012904.01.T01:CDS 35.0%
GTCTTCTCAAAACTATAGGA+CGG - Chr3:26647737-26647756 None:intergenic 35.0%
TACCAAGAAGGATTATTCTC+GGG - Chr3:26647969-26647988 None:intergenic 35.0%
TGTCTAAAAGCTGGATTCTA+CGG + Chr3:26647885-26647904 MsG0380012904.01.T01:CDS 35.0%
TTGAATGTGTACGTAAACCT+TGG + Chr3:26647463-26647482 MsG0380012904.01.T01:CDS 35.0%
! AGTCAAATTAGATTGGCCAA+AGG + Chr3:26647668-26647687 MsG0380012904.01.T01:CDS 35.0%
! TGTGCCATCTGATCAATTTT+GGG + Chr3:26648087-26648106 MsG0380012904.01.T01:CDS 35.0%
!! AGTTTGAATTCGTTGGTAGT+TGG - Chr3:26647936-26647955 None:intergenic 35.0%
!! CATCATCTTCTCTAAGATGT+AGG - Chr3:26647581-26647600 None:intergenic 35.0%
!!! TATAGTTTTGAGAAGACCAC+TGG + Chr3:26647740-26647759 MsG0380012904.01.T01:CDS 35.0%
!!! TCACATCCCCTTAGTTTTAA+TGG + Chr3:26647855-26647874 MsG0380012904.01.T01:CDS 35.0%
AAATTTGGCGTCTCTCTTGT+GGG - Chr3:26647605-26647624 None:intergenic 40.0%
CCATCATCATCCTCTTGAAA+TGG - Chr3:26647825-26647844 None:intergenic 40.0%
CCATTTCAAGAGGATGATGA+TGG + Chr3:26647822-26647841 MsG0380012904.01.T01:CDS 40.0%
CGGTACATAGTCATGAAACA+AGG - Chr3:26647507-26647526 None:intergenic 40.0%
CTGAACAACATTTGACGATG+CGG - Chr3:26647361-26647380 None:intergenic 40.0%
TAAATTTGGCGTCTCTCTTG+TGG - Chr3:26647606-26647625 None:intergenic 40.0%
TCGGCCGATCATTATCAAAT+CGG + Chr3:26647993-26648012 MsG0380012904.01.T01:CDS 40.0%
TTGAAGTCGATAGACATCCT+CGG - Chr3:26647700-26647719 None:intergenic 40.0%
TTGTCAAATAAGAGGGACCA+AGG - Chr3:26647483-26647502 None:intergenic 40.0%
! GTGTGCCATCTGATCAATTT+TGG + Chr3:26648086-26648105 MsG0380012904.01.T01:CDS 40.0%
! TGTATTCTCTTTCTGGTGAG+AGG + Chr3:26647634-26647653 MsG0380012904.01.T01:CDS 40.0%
!! GGATGTCTATCGACTTCAAA+AGG + Chr3:26647701-26647720 MsG0380012904.01.T01:CDS 40.0%
ACATCCTCGGTCAAAACCTT+TGG - Chr3:26647687-26647706 None:intergenic 45.0%
ACATGTGGAACAAACCATCC+TGG - Chr3:26647768-26647787 None:intergenic 45.0%
ACATGTTCATCCAGATGAGG+AGG + Chr3:26647782-26647801 MsG0380012904.01.T01:CDS 45.0%
ATAGCCTACGCAGTAACTCT+TGG + Chr3:26648116-26648135 MsG0380012904.01.T01:CDS 45.0%
CGCATCGTCAAATGTTGTTC+AGG + Chr3:26647359-26647378 MsG0380012904.01.T01:CDS 45.0%
GAAGGATTATTCTCGGGCAA+AGG - Chr3:26647963-26647982 None:intergenic 45.0%
GCGAAACGAGAGTTGTATTG+TGG + Chr3:26647907-26647926 MsG0380012904.01.T01:CDS 45.0%
TCATCATCATCCTCCTCATC+TGG - Chr3:26647795-26647814 None:intergenic 45.0%
TCCACATGTTCATCCAGATG+AGG + Chr3:26647779-26647798 MsG0380012904.01.T01:CDS 45.0%
TCCTCATCTGGATGAACATG+TGG - Chr3:26647783-26647802 None:intergenic 45.0%
TCTTCCAAGAGTTACTGCGT+AGG - Chr3:26648123-26648142 None:intergenic 45.0%
TGATCAGATGGCACACGATT+AGG - Chr3:26648082-26648101 None:intergenic 45.0%
TGCCCGAGAATAATCCTTCT+TGG + Chr3:26647964-26647983 MsG0380012904.01.T01:CDS 45.0%
ACAAACCATCCTGGTACCAG+TGG - Chr3:26647759-26647778 None:intergenic 50.0%
TCGGCCGAAACATACCAAGA+AGG - Chr3:26647981-26648000 None:intergenic 50.0%
TGACGACGGACCATTTCAAG+AGG + Chr3:26647812-26647831 MsG0380012904.01.T01:CDS 50.0%
TTGAGAAGACCACTGGTACC+AGG + Chr3:26647747-26647766 MsG0380012904.01.T01:CDS 50.0%
! GAGGAGGATGATGATGACGA+CGG + Chr3:26647798-26647817 MsG0380012904.01.T01:CDS 50.0%
!! TTGGCCAAAGGTTTTGACCG+AGG + Chr3:26647680-26647699 MsG0380012904.01.T01:CDS 50.0%
GAAGACCACTGGTACCAGGA+TGG + Chr3:26647751-26647770 MsG0380012904.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 26647351 26648148 26647351 ID=MsG0380012904.01;Name=MsG0380012904.01
Chr3 mRNA 26647351 26648148 26647351 ID=MsG0380012904.01.T01;Parent=MsG0380012904.01;Name=MsG0380012904.01.T01;_AED=0.31;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|265
Chr3 exon 26647351 26648148 26647351 ID=MsG0380012904.01.T01:exon:8230;Parent=MsG0380012904.01.T01
Chr3 CDS 26647351 26648148 26647351 ID=MsG0380012904.01.T01:cds;Parent=MsG0380012904.01.T01
Gene Sequence

>MsG0380012904.01.T01

ATGTCATCCGCATCGTCAAATGTTGTTCAGGTTAGCAGCAATGCCAATCATATACCAGATGATATTGTCTTCTCTATTCTCTCTAAACTTCCTTTTAAATCTTTGAAGCGTTTTGAATGTGTACGTAAACCTTGGTCCCTCTTATTTGACAACCCTTGTTTCATGACTATGTACCGCAACTATCTTTTAACAAGACCATGTTCTTATTATGATGATACATCTCTTCTCCTACATCTTAGAGAAGATGATGACCCACAAGAGAGACGCCAAATTTATTATTATCTGTATTCTCTTTCTGGTGAGAGGTTTGAGAATAGAGTCAAATTAGATTGGCCAAAGGTTTTGACCGAGGATGTCTATCGACTTCAAAAGGAACAGTGTGTCCGTCCTATAGTTTTGAGAAGACCACTGGTACCAGGATGGTTTGTTCCACATGTTCATCCAGATGAGGAGGATGATGATGACGACGGACCATTTCAAGAGGATGATGATGGTTTTGAAATTTCACATCCCCTTAGTTTTAATGGTATTCTTTGTCTAAAAGCTGGATTCTACGGCGAAACGAGAGTTGTATTGTGGAATCCAACTACCAACGAATTCAAACTCATTCCTTTGCCCGAGAATAATCCTTCTTGGTATGTTTCGGCCGATCATTATCAAATCGGTTATGATCATGTTAAAGATGATTATAAGATGATTCGCTGCACATATTATTCTCCAAAATTTAACCTAATCGTGTGCCATCTGATCAATTTTGGGAGATCTATAGCCTACGCAGTAACTCTTGGAAGAAATTAA
Protein sequence

>MsG0380012904.01.T01

MSSASSNVVQVSSNANHIPDDIVFSILSKLPFKSLKRFECVRKPWSLLFDNPCFMTMYRNYLLTRPCSYYDDTSLLLHLREDDDPQERRQIYYYLYSLSGERFENRVKLDWPKVLTEDVYRLQKEQCVRPIVLRRPLVPGWFVPHVHPDEEDDDDDGPFQEDDDGFEISHPLSFNGILCLKAGFYGETRVVLWNPTTNEFKLIPLPENNPSWYVSADHYQIGYDHVKDDYKMIRCTYYSPKFNLIVCHLINFGRSIAYAVTLGRN*