AlfalfaGEDB | MsG0680035293.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035293.01

KEGG: -
GO: GO:0005515
PFAM: PF00646 PF07734

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035293.01.T01	XP_013442600.1	95.522	402	18	0	342	743	2	403	0	788
MsG0680035293.01.T01	XP_013442600.1	91.718	326	26	1	1	325	56	381	0	611

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035293.01.T01	Q8GXC7	25.532	423	248	16	330	715	9	401	8.35E-22	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035293.01.T01	A0A072TST8	95.522	402	18	0	342	743	2	403	0.0	788

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0080048101.01	MsG0680035293.01	PPI
MsG0080048487.01	MsG0680035293.01	PPI
MsG0080048487.01	MsG0680035293.01	PPI
MsG0180000330.01	MsG0680035293.01	PPI
MsG0180000837.01	MsG0680035293.01	PPI
MsG0180000838.01	MsG0680035293.01	PPI
MsG0180001056.01	MsG0680035293.01	PPI
MsG0180001514.01	MsG0680035293.01	PPI
MsG0180002191.01	MsG0680035293.01	PPI
MsG0180002191.01	MsG0680035293.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035293.01.T01	MTR_0129s0070	95.522	402	18	0	342	743	2	403	0.0	788
MsG0680035293.01.T01	MTR_0129s0070	91.718	326	26	1	1	325	56	381	0.0	611
MsG0680035293.01.T01	MTR_0129s0120	93.687	396	25	0	342	737	2	397	0.0	758
MsG0680035293.01.T01	MTR_0129s0120	90.491	326	30	1	1	325	56	381	0.0	608
MsG0680035293.01.T01	MTR_4g117550	63.317	398	117	5	343	737	3	374	2.29e-165	481
MsG0680035293.01.T01	MTR_4g117550	58.663	329	106	6	1	325	56	358	1.22e-118	361
MsG0680035293.01.T01	MTR_0129s0050	61.951	410	131	9	347	736	4	408	5.23e-156	459
MsG0680035293.01.T01	MTR_0129s0050	56.215	354	129	10	1	333	53	401	3.87e-109	338
MsG0680035293.01.T01	MTR_8g063440	51.134	397	180	8	342	737	1	384	4.46e-121	368
MsG0680035293.01.T01	MTR_8g063440	50.000	314	145	9	1	312	51	354	2.86e-87	280

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035293.01.T01	AT3G06240	25.532	423	248	16	330	715	9	401	8.52e-23	102
MsG0680035293.01.T01	AT3G06240	27.843	255	158	10	60	312	163	393	2.23e-16	82.8
MsG0680035293.01.T01	AT3G16210	23.861	373	215	15	353	716	1	313	1.10e-17	85.9
MsG0680035293.01.T01	AT3G17530	23.100	329	212	11	360	677	9	307	5.68e-15	78.2
MsG0680035293.01.T01	AT3G17490	23.423	333	214	10	356	682	5	302	1.18e-13	73.9
MsG0680035293.01.T01	AT3G22940	24.727	275	169	9	365	629	6	252	2.41e-13	73.2
MsG0680035293.01.T01	AT5G15660	26.239	343	208	14	340	673	9	315	7.25e-13	72.0
MsG0680035293.01.T01	AT4G12560	23.280	378	235	13	360	714	7	352	6.19e-12	68.9
MsG0680035293.01.T01	AT4G12560	24.815	270	171	10	68	318	96	352	6.10e-11	65.9
MsG0680035293.01.T01	AT4G12560	23.280	378	235	13	360	714	7	352	6.19e-12	68.9

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Find 174 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATCATTCATATACA+AGG	0.532884	6:-101588355	None:intergenic
AAAACTATCATTCATATACA+AGG	0.532884	6:-101596162	None:intergenic
AAAATAATGTCAAGTTAGAT+TGG	0.346117	6:+101587818	MsG0680035293.01.T01:CDS
AAACTATCATTCATATACAA+GGG	0.631033	6:-101588354	None:intergenic
AAACTATCATTCATATACAA+GGG	0.631033	6:-101596161	None:intergenic
AAAGCAAATATAACACATGA+AGG	0.557028	6:-101587780	None:intergenic
AAAGTACAGGTGACTCGGTA+GGG	0.549427	6:-101587984	None:intergenic
AAAGTACAGGTGACTCGGTA+GGG	0.549427	6:-101595791	None:intergenic
AAATATAACACATGAAGATT+TGG	0.367469	6:-101595582	None:intergenic
AAATATAACACATGAAGGTT+TGG	0.438386	6:-101587775	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAACTCAATCGACTAA+CGG	-	Chr6:101592181-101592200	None:intergenic	30.0%
AAATATTGATCATTCTCACC+TGG	+	Chr6:101589717-101589736	MsG0680035293.01.T01:intron	30.0%
AACCGTTTCAAAGATTTAAG+AGG	-	Chr6:101595426-101595445	None:intergenic	30.0%
AACCTATTGAATAGCATGAA+AGG	+	Chr6:101590661-101590680	MsG0680035293.01.T01:intron	30.0%
ACAATTTGACCTATGTCATA+AGG	+	Chr6:101594727-101594746	MsG0680035293.01.T01:intron	30.0%
ACATTGCATTATATATGCAG+GGG	+	Chr6:101591578-101591597	MsG0680035293.01.T01:intron	30.0%
AGAAATGGATATAGTAGAGA+CGG	+	Chr6:101593260-101593279	MsG0680035293.01.T01:intron	30.0%
ATAGATGTACTGAAAAACTC+TGG	-	Chr6:101594775-101594794	None:intergenic	30.0%
ATATCACCTTCAAAATCATC+TGG	-	Chr6:101595912-101595931	None:intergenic	30.0%
ATCAACTCATACATCTTGTA+AGG	-	Chr6:101589180-101589199	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	101587694	101596547	101587694	ID=MsG0680035293.01;Name=MsG0680035293.01
Chr6	mRNA	101587694	101596547	101587694	ID=MsG0680035293.01.T01;Parent=MsG0680035293.01;Name=MsG0680035293.01.T01;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|0.66\|0\|0\|3\|0\|743
Chr6	exon	101587694	101588626	101587694	ID=MsG0680035293.01.T01:exon:10770;Parent=MsG0680035293.01.T01
Chr6	exon	101589128	101589187	101589128	ID=MsG0680035293.01.T01:exon:10771;Parent=MsG0680035293.01.T01
Chr6	exon	101595309	101596547	101595309	ID=MsG0680035293.01.T01:exon:10772;Parent=MsG0680035293.01.T01
Chr6	CDS	101587694	101588626	101587694	ID=MsG0680035293.01.T01:cds;Parent=MsG0680035293.01.T01
Chr6	CDS	101589128	101589187	101589128	ID=MsG0680035293.01.T01:cds;Parent=MsG0680035293.01.T01
Chr6	CDS	101595309	101596547	101595309	ID=MsG0680035293.01.T01:cds;Parent=MsG0680035293.01.T01

Gene Sequence

>MsG0680035293.01.T01

ATGTACCGCAATTATTTCATATCCAGTACTTATGAGGAGGATGGTTCACGTCTCCTCCTACAACAGACTTTGCCATATTTACCAAACCTTCATGTGTTATATTTGCTTTTTGGTGAGAGGTTTGAAAATAATGTCAAGTTAGATTGGCCACCACCATTTCAAGAGGATAACGTAGCTATTCATATTTTAGGTCCGGTAATTAACGGTATTGTTTGTCTCTATCAAGGGCGAGAACCTATTGTTGTATTATGGAACCCAGCTACCGAGGAATACAAGGTCCTTCCTCCCAGCCCTACCGAGTCACCTGTACTTTATGAGGAAGTCTATTATTATGTTCATGGATTTGGTTATGACCATGTTAGAGATGACTACAAAGTCATTCGATACGTATCTTATAGTCTAGATGTACCTGGTGATTTTGAAGGTGATATTGATGGTGAGCCAATCAAGCTATCACGTGACAGCATGTGGGAGATATATTCCCTAAGAAGCAACTCTTGGAGAAAACTTGATCTGGATCTGCCTTGTGCTCATCACGGTTGGGTAGGTGTCTATGTCTACATGAAGGGAGTATGTCATTGGTATCAAGATGAATTTGAACATAAAGGATATTTGGTGTCATTTGACTTAAGCAATGAGGTGTTTTGTACAACACTCCTGCCCTTGTATATGAATGATAGTTTTGATTCTGTATTTTTGATGAGATACTTGATGGTATTAAATGACCACGTTGCTTTGATATCAAACTATGTAGAAATGACTACTTTTCACATATCTATTTTGGGTGAACTCGGTGTGAAGGAGTCTTGGACTAAACTCTTCGTTATAGGGCCTTTACCTTGCATTGAGCATCCTATCGGGGAGGGAAAGAATGGTGATCTATTCTTCATAAGAAAAGATGGCGAACTAGTGAGATTTGATTTAAGTACTGGAGTTAGGGGATTTCGTTTAAAGGGTTATGCAAATTGTATAAGAGAAGAGACCTTACAAGATCTTCACGAAAACCCATCTTCTGAGAAGACGATGCAATCAACAGATTCTGTTACAGCTGAAAAGGTTAGCAATCATATTCATGATGATCTTGCATTTTCCATTCTGTCCAAATTGCCTCTTAAATCTTTGAAACGGTTTAGTTGCGTATGTAAATCATGGTCTTGCTTATTTGAGAATCCTAATTTCATGAACATGTACCGTAATTATTTCATATCCAGTACTTATGAGGAGGATGGTTCACGTCTCCTCCTACAACAGACTCCGCCATATTTACCAAATCTTCATGTGTTATATTTGCTTTTTGGTGAGAGGTTTGAGAATAAGGTCAAATTAGATTGGCCACCTCTATTTCAAGAGGATAACACAGCTATTCATATTTTAGGTCCGGTTATTAACGGCATTGTTTGCCTCTATCAAGGACGAGAACCTGTTGTTATATTATGGAACCCAGCTACCGAGGAATACAAGGTCCTTCCTCCCAGCCCTACCGAGTCACCTGTACTTTATGAGGAAGTCTATTATTATGTTCATGGATTTGGTTATGACCATGTTAGAGATGACTACAAAGTCATTCGATATATATCTTATAGTCTAGATGTACCAGATGATTTTGAAGGTGATATTGATGGTGAGCCAATCAAGCTATCACGTGACAGCATGTGGGAGATATATAACCTAAGAAGCAACTCTTGGAGAAAACTTGATCTGGATCTTCCTCGTGCTCATCACGGTTGGGTAGGTGTCTATGTGTACATGAAGGGAGTGTGTCACTGGTATCAAGATGAATTTGAACATAAAGGATATTTGGTGTCATTTGACTTAAGCAAGGAGGTGTTTTGTACAACACCCCTGCCCTTGTATATGAATGATAGTTTTGATTCTGTATTTTTGTTGAGATACTTGATGGTATTAAATGACCACGTTGCTTTGATCTCAAACTATGTAGAAATGACTACTTTTCACATATCTATTTTGGGTGAACTCGGAGTGAAGGAGTCTTGGACTAAACTCTTCATTATTGGGCCTTTACCTTGCATTGAGCATCCTATTGGGGAGGGAAAGAATGGTGATTTATTCTTCAGAAGAAAAGATGGCGAACTAGTCAGATTTAATTTAAGTACTGGAGTGATTGATGAGCTTGGTCTTAAAGGGGAATTCGGTTGTTGTCAGATTGTCAATTACAAGGAAAGCTCTCTTCCTATTGGACAAATAAATGATTGCTTATGTTTATGCCAGTGA

Protein sequence

>MsG0680035293.01.T01

MYRNYFISSTYEEDGSRLLLQQTLPYLPNLHVLYLLFGERFENNVKLDWPPPFQEDNVAIHILGPVINGIVCLYQGREPIVVLWNPATEEYKVLPPSPTESPVLYEEVYYYVHGFGYDHVRDDYKVIRYVSYSLDVPGDFEGDIDGEPIKLSRDSMWEIYSLRSNSWRKLDLDLPCAHHGWVGVYVYMKGVCHWYQDEFEHKGYLVSFDLSNEVFCTTLLPLYMNDSFDSVFLMRYLMVLNDHVALISNYVEMTTFHISILGELGVKESWTKLFVIGPLPCIEHPIGEGKNGDLFFIRKDGELVRFDLSTGVRGFRLKGYANCIREETLQDLHENPSSEKTMQSTDSVTAEKVSNHIHDDLAFSILSKLPLKSLKRFSCVCKSWSCLFENPNFMNMYRNYFISSTYEEDGSRLLLQQTPPYLPNLHVLYLLFGERFENKVKLDWPPLFQEDNTAIHILGPVINGIVCLYQGREPVVILWNPATEEYKVLPPSPTESPVLYEEVYYYVHGFGYDHVRDDYKVIRYISYSLDVPDDFEGDIDGEPIKLSRDSMWEIYNLRSNSWRKLDLDLPRAHHGWVGVYVYMKGVCHWYQDEFEHKGYLVSFDLSKEVFCTTPLPLYMNDSFDSVFLLRYLMVLNDHVALISNYVEMTTFHISILGELGVKESWTKLFIIGPLPCIEHPIGEGKNGDLFFRRKDGELVRFNLSTGVIDELGLKGEFGCCQIVNYKESSLPIGQINDCLCLCQ*