AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006127.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006127.01.T01 MTR_4g055820 51.838 272 92 1 187 419 8 279 1.19e-85 265
MsG0180006127.01.T01 MTR_2g104340 48.201 278 99 5 180 419 2 272 1.63e-73 236
MsG0180006127.01.T01 MTR_8g041270 47.552 286 100 7 179 419 2 282 2.14e-70 228
MsG0180006127.01.T01 MTR_2g104280 45.487 277 102 5 188 419 9 281 3.57e-63 209
MsG0180006127.01.T01 MTR_7g069550 43.321 277 105 6 187 419 8 276 4.23e-61 203
MsG0180006127.01.T01 MTR_8g013000 43.333 270 103 5 188 414 5 267 1.02e-54 187
MsG0180006127.01.T01 MTR_2g104260 44.322 273 103 6 187 414 8 276 4.23e-54 181
MsG0180006127.01.T01 MTR_2g021770 39.860 286 114 6 187 419 6 286 2.07e-53 183
MsG0180006127.01.T01 MTR_2g022000 36.458 288 126 6 188 419 11 297 3.63e-53 183
MsG0180006127.01.T01 MTR_2g021800 36.332 289 126 5 188 419 11 298 2.59e-52 181
MsG0180006127.01.T01 MTR_2g021950 38.028 284 116 7 184 419 7 278 1.14e-48 170
MsG0180006127.01.T01 MTR_5g072060 42.697 267 93 7 191 419 4 248 1.35e-48 175
MsG0180006127.01.T01 MTR_4g117550 39.636 275 118 7 186 419 10 277 2.54e-48 169
MsG0180006127.01.T01 MTR_2g064950 41.636 269 118 7 187 419 4 269 4.72e-47 166
MsG0180006127.01.T01 MTR_0129s0050 39.085 284 122 9 186 419 7 289 8.10e-47 166
MsG0180006127.01.T01 MTR_8g063440 39.781 274 116 7 184 419 3 265 1.29e-46 165
MsG0180006127.01.T01 MTR_4g102410 35.986 289 132 6 178 419 46 328 4.23e-46 165
MsG0180006127.01.T01 MTR_1g007410 38.768 276 121 8 188 419 17 288 1.02e-45 163
MsG0180006127.01.T01 MTR_5g059430 34.615 312 133 7 168 419 1 301 6.55e-45 161
MsG0180006127.01.T01 MTR_6g079770 38.542 288 119 7 188 419 12 297 1.74e-44 160
MsG0180006127.01.T01 MTR_0134s0060 38.435 294 119 9 184 419 3 292 2.04e-44 159
MsG0180006127.01.T01 MTR_2g038680 39.175 291 112 10 188 419 11 295 2.11e-44 159
MsG0180006127.01.T01 MTR_8g012090 37.410 278 92 5 184 419 7 244 3.39e-44 157
MsG0180006127.01.T01 MTR_6g461660 36.027 297 122 8 175 419 1 281 4.09e-44 158
MsG0180006127.01.T01 MTR_5g097220 36.913 298 119 10 183 419 3 292 4.82e-44 158
MsG0180006127.01.T01 MTR_7g017170 35.336 283 123 5 184 419 9 278 4.87e-44 158
MsG0180006127.01.T01 MTR_7g017130 35.336 283 123 5 184 419 9 278 4.87e-44 158
MsG0180006127.01.T01 MTR_7g016930 37.548 261 125 7 184 419 7 254 6.75e-44 156
MsG0180006127.01.T01 MTR_0129s0070 36.299 281 118 5 186 419 10 276 1.54e-43 157
MsG0180006127.01.T01 MTR_5g097330 36.678 289 118 6 184 419 7 283 1.67e-43 157
MsG0180006127.01.T01 MTR_6g090180 34.812 293 128 6 181 419 35 318 4.96e-43 156
MsG0180006127.01.T01 MTR_7g079640 41.455 275 87 11 187 419 8 250 5.24e-43 155
MsG0180006127.01.T01 MTR_5g037680 36.458 288 98 7 188 419 3 261 6.60e-43 156
MsG0180006127.01.T01 MTR_8g464770 37.363 273 113 6 188 419 7 262 1.00e-42 154
MsG0180006127.01.T01 MTR_5g097350 36.655 281 108 7 188 417 11 272 4.07e-42 153
MsG0180006127.01.T01 MTR_6g086825 37.234 282 115 7 191 419 68 340 5.50e-42 154
MsG0180006127.01.T01 MTR_5g096630 37.500 280 122 8 187 419 12 285 6.50e-42 153
MsG0180006127.01.T01 MTR_0831s0010 37.589 282 121 10 178 419 33 299 2.14e-41 152
MsG0180006127.01.T01 MTR_5g069390 34.202 307 135 8 168 419 1 295 3.18e-41 152
MsG0180006127.01.T01 MTR_3g011120 32.971 276 127 6 185 419 6 264 9.37e-41 149
MsG0180006127.01.T01 MTR_0129s0120 35.336 283 118 5 186 419 10 276 1.05e-40 149
MsG0180006127.01.T01 MTR_0054s0100 34.576 295 124 10 182 419 6 288 3.67e-40 148
MsG0180006127.01.T01 MTR_0054s0090 34.007 297 129 10 178 419 2 286 1.26e-39 146
MsG0180006127.01.T01 MTR_7g017040 35.294 289 118 7 184 419 7 279 3.89e-39 145
MsG0180006127.01.T01 MTR_2g066170 33.213 277 127 6 186 419 5 266 4.12e-39 145
MsG0180006127.01.T01 MTR_6g080680 35.811 296 118 9 175 419 1 275 5.04e-39 145
MsG0180006127.01.T01 MTR_8g046310 34.615 286 115 9 179 419 2 260 7.75e-39 144
MsG0180006127.01.T01 MTR_2g066200 31.802 283 129 5 184 419 3 268 1.57e-38 143
MsG0180006127.01.T01 MTR_5g094350 35.793 271 126 6 189 419 9 271 1.62e-38 140
MsG0180006127.01.T01 MTR_5g024260 33.333 288 122 8 173 412 1 266 3.20e-38 143
MsG0180006127.01.T01 MTR_2g034700 35.294 272 112 10 187 414 7 258 3.93e-38 142
MsG0180006127.01.T01 MTR_4g028660 35.395 291 122 11 179 419 5 279 5.24e-38 142
MsG0180006127.01.T01 MTR_4g027450 35.395 291 122 11 179 419 5 279 5.24e-38 142
MsG0180006127.01.T01 MTR_5g097680 33.550 307 122 10 187 419 11 309 1.38e-37 141
MsG0180006127.01.T01 MTR_5g022850 36.752 234 139 5 188 419 11 237 2.17e-37 139
MsG0180006127.01.T01 MTR_4g028680 34.680 297 117 11 179 419 5 280 4.33e-37 139
MsG0180006127.01.T01 MTR_1g098180 33.333 264 125 7 179 419 5 240 1.15e-36 137
MsG0180006127.01.T01 MTR_1g007450 35.842 279 127 7 186 419 5 276 4.86e-36 137
MsG0180006127.01.T01 MTR_8g039500 32.130 277 121 6 186 419 5 257 1.27e-35 134
MsG0180006127.01.T01 MTR_4g028510 35.714 294 120 13 179 419 5 282 3.70e-35 135
MsG0180006127.01.T01 MTR_6g079810 33.333 309 135 10 166 419 51 343 1.14e-34 134
MsG0180006127.01.T01 MTR_5g074800 40.265 226 90 8 233 419 2 221 1.29e-34 131
MsG0180006127.01.T01 MTR_4g130330 36.918 279 101 11 192 414 6 265 1.43e-34 132
MsG0180006127.01.T01 MTR_5g097820 31.786 280 123 7 179 407 7 269 1.70e-34 129
MsG0180006127.01.T01 MTR_4g028750 35.216 301 107 13 185 419 2 280 2.00e-34 132
MsG0180006127.01.T01 MTR_8g063330 33.333 285 118 9 186 419 5 268 2.30e-34 133
MsG0180006127.01.T01 MTR_8g046220 32.343 303 126 9 179 419 3 288 3.31e-34 132
MsG0180006127.01.T01 MTR_4g014370 33.987 306 114 14 186 418 4 294 1.46e-33 130
MsG0180006127.01.T01 MTR_8g064890 33.813 278 132 10 180 414 2 270 2.27e-33 129
MsG0180006127.01.T01 MTR_2g065840 29.617 287 130 6 184 419 3 268 3.32e-33 129
MsG0180006127.01.T01 MTR_1g053510 35.548 301 111 13 184 419 5 287 3.34e-33 129
MsG0180006127.01.T01 MTR_5g043605 34.241 257 127 8 168 419 2 221 4.41e-33 128
MsG0180006127.01.T01 MTR_7g104710 36.680 259 134 8 180 419 4 251 7.86e-33 126
MsG0180006127.01.T01 MTR_5g037190 33.094 278 100 8 184 409 7 250 1.97e-32 123
MsG0180006127.01.T01 MTR_2g065860 32.246 276 122 9 184 412 3 260 2.12e-32 126
MsG0180006127.01.T01 MTR_8g467670 32.443 262 116 6 192 411 13 255 4.85e-32 125
MsG0180006127.01.T01 MTR_5g074850 35.862 290 125 14 182 419 24 304 1.14e-31 128
MsG0180006127.01.T01 MTR_5g091140 31.000 300 169 9 147 419 6 294 2.21e-31 124
MsG0180006127.01.T01 MTR_1g115205 35.983 239 120 8 175 392 10 236 4.06e-31 120
MsG0180006127.01.T01 MTR_6g070880 36.885 244 92 10 184 373 23 258 5.32e-31 120
MsG0180006127.01.T01 MTR_6g071420 36.885 244 92 10 184 373 23 258 5.32e-31 120
MsG0180006127.01.T01 MTR_6g465360 33.700 273 119 9 150 367 22 287 7.66e-31 120
MsG0180006127.01.T01 MTR_8g033140 32.039 309 130 10 179 419 3 299 1.27e-30 122
MsG0180006127.01.T01 MTR_2g066150 32.700 263 106 11 186 412 5 232 1.67e-30 120
MsG0180006127.01.T01 MTR_8g033110 35.192 287 114 12 192 419 13 286 2.19e-30 121
MsG0180006127.01.T01 MTR_5g092850 33.333 279 127 10 192 419 15 285 3.64e-30 120
MsG0180006127.01.T01 MTR_3g019290 40.217 184 91 6 182 357 3 175 7.15e-30 114
MsG0180006127.01.T01 MTR_5g096900 32.872 289 116 11 185 419 4 268 7.33e-30 118
MsG0180006127.01.T01 MTR_6g478230 32.653 294 113 9 179 419 17 278 1.74e-29 119
MsG0180006127.01.T01 MTR_5g075370 35.231 281 122 11 192 419 7 280 1.80e-29 121
MsG0180006127.01.T01 MTR_8g046200 31.250 320 118 13 184 419 4 305 1.05e-28 117
MsG0180006127.01.T01 MTR_1g076810 34.413 247 104 8 184 386 9 241 4.70e-28 117
MsG0180006127.01.T01 MTR_8g032980 35.314 303 119 16 179 419 2 289 5.11e-28 115
MsG0180006127.01.T01 MTR_1g007430 32.090 268 102 8 204 419 7 246 7.03e-28 112
MsG0180006127.01.T01 MTR_8g033090 33.793 290 112 12 192 419 13 284 1.13e-27 114
MsG0180006127.01.T01 MTR_5g098950 40.881 159 77 5 242 400 64 205 9.04e-27 108
MsG0180006127.01.T01 MTR_0175s0020 77.027 74 13 1 1 74 82 151 9.86e-27 107
MsG0180006127.01.T01 MTR_8g018110 31.469 286 127 7 192 419 13 287 1.49e-26 110
MsG0180006127.01.T01 MTR_4g014370 34.000 250 116 11 181 418 10 222 1.81e-26 109
MsG0180006127.01.T01 MTR_8g073570 39.157 166 59 5 190 316 7 169 2.25e-26 104
MsG0180006127.01.T01 MTR_5g092860 35.484 248 114 11 211 419 20 260 3.85e-26 108
MsG0180006127.01.T01 MTR_2g021920 48.739 119 55 4 306 419 37 154 7.18e-26 105
MsG0180006127.01.T01 MTR_8g036970 33.043 230 114 7 197 413 2 204 3.83e-25 106
MsG0180006127.01.T01 MTR_1g050308 29.388 245 117 4 167 371 8 236 3.95e-25 105
MsG0180006127.01.T01 MTR_5g096910 28.620 297 125 9 182 419 6 274 1.35e-24 104
MsG0180006127.01.T01 MTR_6g079790 38.554 166 80 4 262 414 26 182 1.47e-24 103
MsG0180006127.01.T01 MTR_0414s0030 68.056 72 23 0 3 74 44 115 8.72e-23 95.9
MsG0180006127.01.T01 MTR_6g065930 40.909 176 79 5 1 158 72 240 5.49e-22 94.7
MsG0180006127.01.T01 MTR_4g007940 37.580 157 71 7 274 419 78 218 6.04e-22 96.7
MsG0180006127.01.T01 MTR_7g111700 30.375 293 102 7 181 419 3 247 8.27e-22 96.7
MsG0180006127.01.T01 MTR_8g063370 27.519 258 132 7 191 408 22 264 1.38e-21 96.3
MsG0180006127.01.T01 MTR_5g023970 53.521 71 33 0 349 419 6 76 7.16e-21 90.5
MsG0180006127.01.T01 MTR_5g086780 40.000 140 52 2 186 325 9 116 8.15e-21 90.9
MsG0180006127.01.T01 MTR_4g016000 41.322 121 53 5 278 395 2 107 1.03e-20 90.5
MsG0180006127.01.T01 MTR_6g090250 29.682 283 118 10 211 419 29 304 1.78e-20 93.2
MsG0180006127.01.T01 MTR_6g004450 42.017 119 53 4 305 419 48 154 1.88e-20 90.9
MsG0180006127.01.T01 MTR_0485s0050 68.182 66 21 0 1 66 37 102 9.78e-20 87.0
MsG0180006127.01.T01 MTR_7g101200 30.396 227 79 9 207 419 1 162 9.96e-20 88.2
MsG0180006127.01.T01 MTR_6g009350 44.068 118 48 5 304 414 6 112 1.52e-19 86.7
MsG0180006127.01.T01 MTR_5g096070 35.669 157 67 5 182 315 15 160 1.71e-19 85.5
MsG0180006127.01.T01 MTR_5g064700 37.576 165 78 7 272 419 94 250 5.92e-19 88.2
MsG0180006127.01.T01 MTR_5g086590 33.333 147 78 4 273 419 13 139 1.19e-18 85.1
MsG0180006127.01.T01 MTR_6g087620 36.250 160 53 5 266 414 41 162 1.20e-18 85.9
MsG0180006127.01.T01 MTR_8g064790 33.708 178 79 4 180 318 2 179 1.36e-18 86.7
MsG0180006127.01.T01 MTR_0090s0050 66.176 68 23 0 107 174 1 68 2.70e-18 81.3
MsG0180006127.01.T01 MTR_5g097650 36.054 147 62 5 182 296 9 155 3.36e-18 81.6
MsG0180006127.01.T01 MTR_2g059010 59.420 69 28 0 1 69 1 69 8.74e-18 77.8
MsG0180006127.01.T01 MTR_7g029380 65.152 66 23 0 1 66 37 102 9.31e-18 82.4
MsG0180006127.01.T01 MTR_8g063350 29.032 248 121 13 193 419 14 227 1.17e-17 84.0
MsG0180006127.01.T01 MTR_2g059000 57.971 69 29 0 1 69 1 69 1.26e-17 77.4
MsG0180006127.01.T01 MTR_4g045590 41.791 134 73 3 1 130 185 317 1.39e-17 83.6
MsG0180006127.01.T01 MTR_7g034010 50.000 94 41 1 1 94 1 88 1.88e-17 79.7
MsG0180006127.01.T01 MTR_8g041440 54.667 75 34 0 188 262 10 84 2.33e-17 78.2
MsG0180006127.01.T01 MTR_3g047580 41.129 124 53 4 184 287 4 127 2.47e-17 78.2
MsG0180006127.01.T01 MTR_0115s0020 28.975 283 123 11 192 419 9 268 1.93e-16 80.9
MsG0180006127.01.T01 MTR_8g465200 44.762 105 57 1 1 105 57 160 2.57e-16 77.4
MsG0180006127.01.T01 MTR_6g078010 33.117 154 62 6 273 414 86 210 5.13e-16 79.3
MsG0180006127.01.T01 MTR_7g445300 40.000 125 69 2 1 125 37 155 5.54e-16 77.4
MsG0180006127.01.T01 MTR_6g052950 60.563 71 28 0 1 71 180 250 5.63e-16 78.2
MsG0180006127.01.T01 MTR_1g050312 35.252 139 54 5 274 412 64 166 1.01e-15 77.4
MsG0180006127.01.T01 MTR_5g068490 33.793 145 59 5 272 412 43 154 1.27e-15 77.0
MsG0180006127.01.T01 MTR_2g054450 61.538 65 21 1 1 65 135 195 4.02e-15 76.3
MsG0180006127.01.T01 MTR_0860s0010 59.155 71 29 0 1 71 37 107 8.09e-15 72.4
MsG0180006127.01.T01 MTR_5g076490 33.544 158 76 5 280 419 68 214 3.07e-14 73.9
MsG0180006127.01.T01 MTR_3g018750 35.200 125 67 4 306 419 3 124 6.83e-14 71.2
MsG0180006127.01.T01 MTR_4g023130 25.532 235 130 7 187 419 3 194 1.17e-13 71.6
MsG0180006127.01.T01 MTR_8g446060 55.556 63 26 2 74 135 38 99 3.28e-13 68.6
MsG0180006127.01.T01 MTR_7g014910 62.963 54 20 0 1 54 141 194 1.75e-12 66.2
MsG0180006127.01.T01 MTR_6g090260 48.571 70 34 1 352 419 73 142 1.76e-12 67.8
MsG0180006127.01.T01 MTR_6g090260 53.333 60 27 1 184 242 10 69 4.67e-11 63.5
MsG0180006127.01.T01 MTR_4g116330 25.714 280 145 10 174 419 6 256 2.56e-12 68.2
MsG0180006127.01.T01 MTR_0667s0010 24.046 262 144 8 194 419 8 250 7.76e-12 67.0
MsG0180006127.01.T01 MTR_2g461870 50.000 66 33 0 1 66 1 66 1.25e-11 61.2
MsG0180006127.01.T01 MTR_3g036430 24.324 259 149 9 175 419 2 227 1.64e-11 65.5
MsG0180006127.01.T01 MTR_1g053420 57.627 59 24 1 1 59 1 58 3.50e-11 63.9
MsG0180006127.01.T01 MTR_5g048600 54.237 59 26 1 1 59 1 58 4.22e-11 59.3
MsG0180006127.01.T01 MTR_4g109290 36.429 140 64 6 192 320 8 133 4.37e-11 62.0
MsG0180006127.01.T01 MTR_2g071670 49.153 59 30 0 1 59 37 95 4.54e-11 59.7
MsG0180006127.01.T01 MTR_0566s0010 71.795 39 11 0 107 145 26 64 7.17e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 98 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATCCTATGAACCTTTA+TGG 0.145075 1:+100451603 MsG0180006127.01.T01:CDS
ATATAAGTGCTATTACTCTT+AGG 0.252082 1:+100446115 MsG0180006127.01.T01:CDS
GGTTATTGTCTTCGACATTA+TGG 0.255308 1:+100451551 MsG0180006127.01.T01:CDS
TTAAAATCTTTGAAACGATT+TGG 0.264900 1:+100451066 MsG0180006127.01.T01:CDS
TAGGGATGGTAAACAATTAA+AGG 0.266406 1:+100446134 MsG0180006127.01.T01:CDS
TTCCACCGGCTTCTTGTTCA+TGG 0.267579 1:-100447472 None:intergenic
ATAGACTCAATGGGACTTTC+AGG 0.281980 1:-100451425 None:intergenic
AAGAACAATGAAGGAGAGAT+AGG 0.297296 1:+100446174 MsG0180006127.01.T01:CDS
TAAGAGTAATAGCACTTATA+TGG 0.301326 1:-100446113 None:intergenic
TTCAAATCAACGATTGTATA+TGG 0.304447 1:+100451697 MsG0180006127.01.T01:CDS
CAGGAATGACATTGAATTCA+TGG 0.305272 1:-100451406 None:intergenic
GAGGAACAAGACTTGTATTA+TGG 0.325168 1:+100451372 MsG0180006127.01.T01:intron
AAACTATGATGAACATTTCT+TGG 0.334666 1:+100451751 MsG0180006127.01.T01:CDS
TTCTCCAAGAGTTATATCTT+TGG 0.348940 1:-100451637 None:intergenic
GAGAGGATATTAAAATTATT+AGG 0.359516 1:+100451504 MsG0180006127.01.T01:CDS
TGGCTATAAATCTCCCATAA+AGG 0.371505 1:-100451617 None:intergenic
GGTTGGTTTCGGTTTGGTCT+AGG 0.373028 1:-100446083 None:intergenic
AATATCCTATGAACCTTTAT+GGG 0.375214 1:+100451604 MsG0180006127.01.T01:CDS
AACACCTTGTCTTTGTTGCT+CGG 0.379758 1:-100447550 None:intergenic
TTTGATTATTCTATCTAATC+CGG 0.384214 1:+100447337 MsG0180006127.01.T01:CDS
AACAGAGAATGCAAGATGAT+TGG 0.387271 1:-100451028 None:intergenic
CGAAGACAATAACCATCTAT+TGG 0.388650 1:-100451542 None:intergenic
GTGCTTTATTCTTTGAACTT+TGG 0.398321 1:-100447528 None:intergenic
AATCTCCCATAAAGGTTCAT+AGG 0.399252 1:-100451609 None:intergenic
CATTGAATTCATGGGTAGTT+GGG 0.401152 1:-100451397 None:intergenic
TAATCCGGACTTAAATAATT+CGG 0.408383 1:+100447352 MsG0180006127.01.T01:CDS
ACATTGAATTCATGGGTAGT+TGG 0.411542 1:-100451398 None:intergenic
TTAAGGGATCAAGAGGATAG+AGG 0.425006 1:+100447214 MsG0180006127.01.T01:intron
CTTAAATAATTCGGAGGTGG+TGG 0.434147 1:+100447361 MsG0180006127.01.T01:CDS
TAAGGGATCAAGAGGATAGA+GGG 0.435689 1:+100447215 MsG0180006127.01.T01:intron
ACAGAGAATGCAAGATGATT+GGG 0.440529 1:-100451027 None:intergenic
ATAGCCAAAGATATAACTCT+TGG 0.442634 1:+100451633 MsG0180006127.01.T01:CDS
CTCACAATTACCAATATGAA+TGG 0.446018 1:+100447294 MsG0180006127.01.T01:CDS
GAGTAGGGTCATGAGTTCTA+AGG 0.448432 1:-100447274 None:intergenic
TATAAGTGCTATTACTCTTA+GGG 0.453344 1:+100446116 MsG0180006127.01.T01:CDS
GATCTGAAAGTGAAAAGGTT+AGG 0.455470 1:+100450995 MsG0180006127.01.T01:intron
TGAGGAAGTAGCCACCTGTT+GGG 0.458727 1:-100446043 None:intergenic
GACTTCTCAAGTACCCCAAC+AGG 0.460523 1:+100446029 MsG0180006127.01.T01:CDS
CAAGAGGAGAGATGTATCAT+TGG 0.465053 1:-100451181 None:intergenic
CATATTGGTAATTGTGAGTA+GGG 0.468022 1:-100447289 None:intergenic
TTGAGTCTATGCCACCTAAT+CGG 0.470000 1:+100451438 MsG0180006127.01.T01:CDS
ACCTCCGAATTATTTAAGTC+CGG 0.471698 1:-100447356 None:intergenic
ATATGGATGGAATTTGTCAT+TGG 0.471783 1:+100451714 MsG0180006127.01.T01:CDS
TCATAGGATATTTCATTACA+TGG 0.483734 1:-100451593 None:intergenic
ATTAGGTGGCATAGACTCAA+TGG 0.487635 1:-100451435 None:intergenic
CGGAAGTTGTTCATGAAATG+AGG 0.491682 1:-100451126 None:intergenic
GTGAAAATTAAGAACAATGA+AGG 0.501347 1:+100446165 MsG0180006127.01.T01:CDS
ATAATGATGAACGGCGGGCA+TGG 0.505987 1:+100447498 MsG0180006127.01.T01:CDS
GTGGAAAATTTGCTTTATGT+TGG 0.506118 1:+100447380 MsG0180006127.01.T01:CDS
AGAACAATGAAGGAGAGATA+GGG 0.508760 1:+100446175 MsG0180006127.01.T01:CDS
TTCATCATTATAGCTTCCAC+CGG 0.515116 1:-100447486 None:intergenic
GTAGATAATGATGGTGATGA+TGG 0.516189 1:+100447416 MsG0180006127.01.T01:CDS
GGGCAGATCTGAAAGTGAAA+AGG 0.519997 1:+100450990 MsG0180006127.01.T01:intron
TCATATTGGTAATTGTGAGT+AGG 0.526541 1:-100447290 None:intergenic
AATCAACGATTGTATATGGA+TGG 0.531976 1:+100451701 MsG0180006127.01.T01:CDS
TGTGTCAAAGACCGAGGCGG+AGG 0.537646 1:+100451202 MsG0180006127.01.T01:CDS
GAGGAGAGATGTATCATTGG+AGG 0.537943 1:-100451178 None:intergenic
TTAGGTGGCATAGACTCAAT+GGG 0.542886 1:-100451434 None:intergenic
TGGATGGAATTTGTCATTGG+TGG 0.552886 1:+100451717 MsG0180006127.01.T01:CDS
AGGAATGACATTGAATTCAT+GGG 0.552980 1:-100451405 None:intergenic
AAGCTATAATGATGAACGGC+GGG 0.563616 1:+100447493 MsG0180006127.01.T01:CDS
GTGAGGAAGTAGCCACCTGT+TGG 0.564195 1:-100446044 None:intergenic
AACCCACAGGTAGATAATGA+TGG 0.578144 1:+100447407 MsG0180006127.01.T01:CDS
AAATCAGTCTGCCGATTAGG+TGG 0.580957 1:-100451449 None:intergenic
TTATGTTGGTACTAACCCAC+AGG 0.581928 1:+100447394 MsG0180006127.01.T01:CDS
GCCTCGGTCTTTGACACAAG+AGG 0.587091 1:-100451197 None:intergenic
TGGTTTCGGTTTGGTCTAGG+AGG 0.589296 1:-100446080 None:intergenic
GGTTTGGTCTAGGAGGACTT+CGG 0.590746 1:-100446073 None:intergenic
TCACCATCATTATCTACCTG+TGG 0.592007 1:-100447410 None:intergenic
CACCATCATTATCTACCTGT+GGG 0.593746 1:-100447409 None:intergenic
GTGTGAATTAAGGGATCAAG+AGG 0.597543 1:+100447207 MsG0180006127.01.T01:intron
AGTGCTATTACTCTTAGGGA+TGG 0.599075 1:+100446120 MsG0180006127.01.T01:CDS
TCATCACGAGACCTCCGCCT+CGG 0.602880 1:-100451213 None:intergenic
GATAATGATGGTGATGATGG+TGG 0.605192 1:+100447419 MsG0180006127.01.T01:CDS
GAGGAAGTAGCCACCTGTTG+GGG 0.609217 1:-100446042 None:intergenic
GAGGACTTCGGAGGATTGTG+AGG 0.611046 1:-100446061 None:intergenic
TTGCACCATGAACAAGAAGC+CGG 0.613132 1:+100447467 MsG0180006127.01.T01:CDS
GGACTTAAATAATTCGGAGG+TGG 0.613429 1:+100447358 MsG0180006127.01.T01:CDS
TCTTCAAATAAGAGAGACCA+TGG 0.616398 1:-100451102 None:intergenic
TCCTCTTGTGTCAAAGACCG+AGG 0.618289 1:+100451196 MsG0180006127.01.T01:CDS
TTGGTCTAGGAGGACTTCGG+AGG 0.621920 1:-100446070 None:intergenic
GTATCATTGGAGGATGAGTG+AGG 0.630484 1:-100451168 None:intergenic
CACCATGAACAAGAAGCCGG+TGG 0.638929 1:+100447470 MsG0180006127.01.T01:CDS
TGATGATGGTGGTGATAAAG+CGG 0.640864 1:+100447430 MsG0180006127.01.T01:CDS
TCCGGACTTAAATAATTCGG+AGG 0.643781 1:+100447355 MsG0180006127.01.T01:CDS
GGAAGTTGTTCATGAAATGA+GGG 0.644232 1:-100451125 None:intergenic
GTGGAAGCTATAATGATGAA+CGG 0.644357 1:+100447489 MsG0180006127.01.T01:CDS
TTGGATGTGCATACAAACCA+TGG 0.645204 1:+100451085 MsG0180006127.01.T01:CDS
AGCACCGAGCAACAAAGACA+AGG 0.652531 1:+100447546 MsG0180006127.01.T01:CDS
AAGGGATCAAGAGGATAGAG+GGG 0.662301 1:+100447216 MsG0180006127.01.T01:intron
GGTGGTGATAAAGCGGAGGT+AGG 0.672594 1:+100447437 MsG0180006127.01.T01:CDS
GAATAGATATGAAATTAGTG+CGG 0.675878 1:-100451146 None:intergenic
GAAGCTATAATGATGAACGG+CGG 0.677597 1:+100447492 MsG0180006127.01.T01:CDS
AGGGTCATGAGTTCTAAGGA+AGG 0.680304 1:-100447270 None:intergenic
TTCTCAAGTACCCCAACAGG+TGG 0.682008 1:+100446032 MsG0180006127.01.T01:CDS
TCTTGTGTCAAAGACCGAGG+CGG 0.684003 1:+100451199 MsG0180006127.01.T01:CDS
TGATGGTGGTGATAAAGCGG+AGG 0.699915 1:+100447433 MsG0180006127.01.T01:CDS
GAACTATCAGTCAAACACGC+AGG 0.712977 1:-100451677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAATTA+GGG + Chr1:100446783-100446802 MsG0180006127.01.T01:intron 0.0%
!!! AAAAAAAAACTTTTTTTCTT+AGG - Chr1:100446747-100446766 None:intergenic 10.0%
!!! AAGAAAAAAAGTTTTTTTTT+TGG + Chr1:100446747-100446766 MsG0180006127.01.T01:intron 10.0%
!!! ATGATAATACTTTTTTTTTT+AGG + Chr1:100450617-100450636 MsG0180006127.01.T01:intron 10.0%
!!! TGATAATACTTTTTTTTTTA+GGG + Chr1:100450618-100450637 MsG0180006127.01.T01:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - Chr1:100450187-100450206 None:intergenic 100.0%
!! ATTAGAATCCAAAAAATAAA+AGG - Chr1:100451325-100451344 None:intergenic 15.0%
!! CTTAATTGTTAAGTTAAAAT+GGG + Chr1:100448216-100448235 MsG0180006127.01.T01:intron 15.0%
!! TTCTACACAAATTAATTTAA+TGG + Chr1:100450331-100450350 MsG0180006127.01.T01:intron 15.0%
!!! AAAAGTAATATAATTTGTGT+GGG + Chr1:100448162-100448181 MsG0180006127.01.T01:intron 15.0%
!!! AATTGCATATTTTATATTTC+AGG + Chr1:100448961-100448980 MsG0180006127.01.T01:intron 15.0%
!!! CAATTAAGTATTACATTTTA+AGG + Chr1:100450842-100450861 MsG0180006127.01.T01:intron 15.0%
!!! TAAAAGTAATATAATTTGTG+TGG + Chr1:100448161-100448180 MsG0180006127.01.T01:intron 15.0%
!!! TAATAATTTTCCATTCATAT+TGG - Chr1:100447307-100447326 None:intergenic 15.0%
!! AAACAAAAGAATAAAGTTCA+AGG - Chr1:100447864-100447883 None:intergenic 20.0%
!! AAATTAACAATTAAGCACAA+AGG - Chr1:100448505-100448524 None:intergenic 20.0%
!! AACAAAAACAATTAAATACG+TGG - Chr1:100446554-100446573 None:intergenic 20.0%
!! AACAAAAGAATAAAGTTCAA+GGG - Chr1:100447863-100447882 None:intergenic 20.0%
!! AAGAAGAAAGATTATGAAAT+AGG - Chr1:100449905-100449924 None:intergenic 20.0%
!! AATAATAATAAAAGAGCCTT+GGG - Chr1:100449857-100449876 None:intergenic 20.0%
!! AATAGCAAATGTTAATATGA+TGG - Chr1:100447083-100447102 None:intergenic 20.0%
!! AATTAACAATTAAGCACAAA+GGG - Chr1:100448504-100448523 None:intergenic 20.0%
!! ACAAAAACAATTAAATACGT+GGG - Chr1:100446553-100446572 None:intergenic 20.0%
!! AGAAGAAAGATTATGAAATA+GGG - Chr1:100449904-100449923 None:intergenic 20.0%
!! ATAGAAATTAGGGTTTAAAT+TGG - Chr1:100449425-100449444 None:intergenic 20.0%
!! GAGAGGATATTAAAATTATT+AGG + Chr1:100451504-100451523 MsG0180006127.01.T01:CDS 20.0%
!! GCTTAATTGTTAAGTTAAAA+TGG + Chr1:100448215-100448234 MsG0180006127.01.T01:intron 20.0%
!! TAAAATCTAAGCAACTATAA+GGG - Chr1:100449203-100449222 None:intergenic 20.0%
!! TAAACTATTTACGTAATGTT+AGG - Chr1:100450893-100450912 None:intergenic 20.0%
!! TACAAAACAACTTAAAACAA+GGG - Chr1:100446579-100446598 None:intergenic 20.0%
!! TGAATCTAGATTAGAAATTA+GGG - Chr1:100449452-100449471 None:intergenic 20.0%
!! TGTAGTAAAAAGATTCAAAA+AGG - Chr1:100448942-100448961 None:intergenic 20.0%
!! TTAAAATCTAAGCAACTATA+AGG - Chr1:100449204-100449223 None:intergenic 20.0%
!! TTATTGCTTACCAAAAAAAA+TGG + Chr1:100450689-100450708 MsG0180006127.01.T01:intron 20.0%
!! TTCAATTGTTAAAAAGAAAC+AGG + Chr1:100447122-100447141 MsG0180006127.01.T01:intron 20.0%
!! TTGGATTCTAATGTTATTAA+TGG + Chr1:100451333-100451352 MsG0180006127.01.T01:intron 20.0%
!! TTTGATTATTCTATCTAATC+CGG + Chr1:100447337-100447356 MsG0180006127.01.T01:CDS 20.0%
!!! AAAACCTTCCTTTTATTTTT+TGG + Chr1:100451314-100451333 MsG0180006127.01.T01:intron 20.0%
!!! AATCGTTTCAAAGATTTTAA+CGG - Chr1:100451066-100451085 None:intergenic 20.0%
!!! AGACTGATTTTTATTATCAT+GGG + Chr1:100451462-100451481 MsG0180006127.01.T01:CDS 20.0%
!!! ATAAGAGTTTTATACCTATT+TGG - Chr1:100446888-100446907 None:intergenic 20.0%
!!! ATTGTTCTTAATTTTCACAA+CGG - Chr1:100446163-100446182 None:intergenic 20.0%
!!! CTTGTTTTTAACGTAAAATA+TGG + Chr1:100447914-100447933 MsG0180006127.01.T01:intron 20.0%
!!! TAAAAGTAGTCCATTTTTTT+TGG - Chr1:100450702-100450721 None:intergenic 20.0%
!!! TCGATTAAGTATGATTTTTA+AGG + Chr1:100450659-100450678 MsG0180006127.01.T01:intron 20.0%
!!! TTAAAATCTTTGAAACGATT+TGG + Chr1:100451066-100451085 MsG0180006127.01.T01:CDS 20.0%
!!! TTTATTCTGAAGACTTTAAA+GGG - Chr1:100448145-100448164 None:intergenic 20.0%
!!! TTTTATTCTGAAGACTTTAA+AGG - Chr1:100448146-100448165 None:intergenic 20.0%
! AAACTATGATGAACATTTCT+TGG + Chr1:100451751-100451770 MsG0180006127.01.T01:CDS 25.0%
! AAATATCCTATGAACCTTTA+TGG + Chr1:100451603-100451622 MsG0180006127.01.T01:CDS 25.0%
! AAGAAAGATTATGAAATAGG+GGG - Chr1:100449902-100449921 None:intergenic 25.0%
! AATATCCTATGAACCTTTAT+GGG + Chr1:100451604-100451623 MsG0180006127.01.T01:CDS 25.0%
! AATTGTTAAGTTAAAATGGG+CGG + Chr1:100448219-100448238 MsG0180006127.01.T01:intron 25.0%
! ACAAAAGATGAATGTTATGA+TGG - Chr1:100449259-100449278 None:intergenic 25.0%
! AGCAACTAAAAGGATAATTA+TGG - Chr1:100448781-100448800 None:intergenic 25.0%
! ATTAACAATTAAGCACAAAG+GGG - Chr1:100448503-100448522 None:intergenic 25.0%
! ATTAATGAACTGTTATGTTG+TGG + Chr1:100447043-100447062 MsG0180006127.01.T01:intron 25.0%
! ATTAGGGTTACATAGAAATT+AGG - Chr1:100449436-100449455 None:intergenic 25.0%
! CAAAAAAGTAAAGAAACATG+AGG + Chr1:100450802-100450821 MsG0180006127.01.T01:intron 25.0%
! CAAATTCAAAGATACCAAAT+AGG + Chr1:100446871-100446890 MsG0180006127.01.T01:intron 25.0%
! CAATAATAATAAAAGAGCCT+TGG - Chr1:100449858-100449877 None:intergenic 25.0%
! CTACAAAACAACTTAAAACA+AGG - Chr1:100446580-100446599 None:intergenic 25.0%
! CTCTTATATGAAATGAAGAA+AGG + Chr1:100448553-100448572 MsG0180006127.01.T01:intron 25.0%
! GAAGAAAGATTATGAAATAG+GGG - Chr1:100449903-100449922 None:intergenic 25.0%
! GAATAGATATGAAATTAGTG+CGG - Chr1:100451149-100451168 None:intergenic 25.0%
! GAATCCAAAAAATAAAAGGA+AGG - Chr1:100451321-100451340 None:intergenic 25.0%
! GACTTAAACATCTAATTTCA+TGG - Chr1:100449795-100449814 None:intergenic 25.0%
! GATTAACAATTATCAAACTG+TGG + Chr1:100449485-100449504 MsG0180006127.01.T01:intron 25.0%
! GTGAAAATTAAGAACAATGA+AGG + Chr1:100446165-100446184 MsG0180006127.01.T01:CDS 25.0%
! GTGAATCTAGATTAGAAATT+AGG - Chr1:100449453-100449472 None:intergenic 25.0%
! TAAGAGTAATAGCACTTATA+TGG - Chr1:100446116-100446135 None:intergenic 25.0%
! TAATCATAGTATTACGATCA+GGG - Chr1:100446938-100446957 None:intergenic 25.0%
! TAATCCGGACTTAAATAATT+CGG + Chr1:100447352-100447371 MsG0180006127.01.T01:CDS 25.0%
! TATCTTTGAATTTGATGTCA+TGG - Chr1:100446865-100446884 None:intergenic 25.0%
! TCATAGGATATTTCATTACA+TGG - Chr1:100451596-100451615 None:intergenic 25.0%
! TCATTTCATATAAGAGTGAT+GGG - Chr1:100448549-100448568 None:intergenic 25.0%
! TTAATGAACTGTTATGTTGT+GGG + Chr1:100447044-100447063 MsG0180006127.01.T01:intron 25.0%
! TTAGGGTTACATAGAAATTA+GGG - Chr1:100449435-100449454 None:intergenic 25.0%
! TTCAAATCAACGATTGTATA+TGG + Chr1:100451697-100451716 MsG0180006127.01.T01:CDS 25.0%
! TTCATTTCATATAAGAGTGA+TGG - Chr1:100448550-100448569 None:intergenic 25.0%
! TTGATTCATAGTTTGAAGAT+GGG + Chr1:100450970-100450989 MsG0180006127.01.T01:intron 25.0%
! TTTCACAAAAAAACAGATGT+GGG - Chr1:100448026-100448045 None:intergenic 25.0%
! TTTGATTCATAGTTTGAAGA+TGG + Chr1:100450969-100450988 MsG0180006127.01.T01:intron 25.0%
!! AATAGCACTTATATGGTTTT+TGG - Chr1:100446109-100446128 None:intergenic 25.0%
!! ATAGCACTTATATGGTTTTT+GGG - Chr1:100446108-100446127 None:intergenic 25.0%
!! ATATAAGTGCTATTACTCTT+AGG + Chr1:100446115-100446134 MsG0180006127.01.T01:CDS 25.0%
!! GATTTTTATTATCATGGGTT+TGG + Chr1:100451467-100451486 MsG0180006127.01.T01:CDS 25.0%
!! GTGTATGAATAGGTATTTTA+AGG + Chr1:100448089-100448108 MsG0180006127.01.T01:intron 25.0%
!! TAACATTCATCTTTTGTTCT+TGG + Chr1:100449262-100449281 MsG0180006127.01.T01:intron 25.0%
!! TATAAGTGCTATTACTCTTA+GGG + Chr1:100446116-100446135 MsG0180006127.01.T01:CDS 25.0%
!! TCTTTTCTTTTGAATCATTG+AGG + Chr1:100447773-100447792 MsG0180006127.01.T01:intron 25.0%
!! TTCACTTTAAGTTCAAATCA+GGG - Chr1:100448306-100448325 None:intergenic 25.0%
!! TTGTTCTTAATTTTCACAAC+GGG - Chr1:100446162-100446181 None:intergenic 25.0%
!! TTTCACTTTAAGTTCAAATC+AGG - Chr1:100448307-100448326 None:intergenic 25.0%
!! TTTTAATATCCTCTCTAACA+TGG - Chr1:100451499-100451518 None:intergenic 25.0%
!! TTTTCACAAAAAAACAGATG+TGG - Chr1:100448027-100448046 None:intergenic 25.0%
!! TTTTCTTTGTATTCACTATG+TGG + Chr1:100451237-100451256 MsG0180006127.01.T01:CDS 25.0%
!!! AAAACTTTTTTTCTTAGGCA+CGG - Chr1:100446742-100446761 None:intergenic 25.0%
!!! CAGACTGATTTTTATTATCA+TGG + Chr1:100451461-100451480 MsG0180006127.01.T01:CDS 25.0%
!!! CTCATGTTTCTTTACTTTTT+TGG - Chr1:100450804-100450823 None:intergenic 25.0%
!!! CTTGTTTTAAGTTGTTTTGT+AGG + Chr1:100446578-100446597 MsG0180006127.01.T01:intron 25.0%
!!! TGTTTTGTTTTTATAGCAAG+AGG + Chr1:100447879-100447898 MsG0180006127.01.T01:intron 25.0%
!!! TTTTTTTCTTTGCATCATCT+TGG - Chr1:100446611-100446630 None:intergenic 25.0%
AATAAAGTTCAAGGGAGTTT+GGG - Chr1:100447855-100447874 None:intergenic 30.0%
AATCAACGATTGTATATGGA+TGG + Chr1:100451701-100451720 MsG0180006127.01.T01:CDS 30.0%
ACAACTATCTCAGATTAACT+TGG + Chr1:100450939-100450958 MsG0180006127.01.T01:intron 30.0%
ACACCTTAATTCCTAAAGAA+CGG - Chr1:100449769-100449788 None:intergenic 30.0%
ACTAGGTATTAGAGATACTA+TGG + Chr1:100446959-100446978 MsG0180006127.01.T01:intron 30.0%
AGGAATGACATTGAATTCAT+GGG - Chr1:100451408-100451427 None:intergenic 30.0%
AGTAATCATGTCAGTGAAAT+AGG + Chr1:100449683-100449702 MsG0180006127.01.T01:intron 30.0%
ATAGCCAAAGATATAACTCT+TGG + Chr1:100451633-100451652 MsG0180006127.01.T01:CDS 30.0%
ATATGGATGGAATTTGTCAT+TGG + Chr1:100451714-100451733 MsG0180006127.01.T01:CDS 30.0%
ATTGTTAAGTTAAAATGGGC+GGG + Chr1:100448220-100448239 MsG0180006127.01.T01:intron 30.0%
ATTGTTAATCCACGTTAAGA+CGG - Chr1:100449475-100449494 None:intergenic 30.0%
ATTTGAATAGAGATGAGTAG+AGG - Chr1:100447704-100447723 None:intergenic 30.0%
CATGAAATTCCATTAACACA+AGG + Chr1:100446265-100446284 MsG0180006127.01.T01:intron 30.0%
CGCTTTATGAATTGATGTTT+GGG - Chr1:100449550-100449569 None:intergenic 30.0%
CGTAATACTATGATTACACT+AGG + Chr1:100446942-100446961 MsG0180006127.01.T01:intron 30.0%
CTCACAATTACCAATATGAA+TGG + Chr1:100447294-100447313 MsG0180006127.01.T01:CDS 30.0%
CTTACTACTATTACTTCGAT+AGG + Chr1:100449984-100450003 MsG0180006127.01.T01:intron 30.0%
CTTCCTAGATTCTTAAGTTT+AGG - Chr1:100446356-100446375 None:intergenic 30.0%
GAGCAAAAATACGAAAGATT+CGG + Chr1:100449042-100449061 MsG0180006127.01.T01:intron 30.0%
GATTAGAGTGATATAATGGT+AGG + Chr1:100447147-100447166 MsG0180006127.01.T01:intron 30.0%
GGATGATTAGAGTGATATAA+TGG + Chr1:100447143-100447162 MsG0180006127.01.T01:intron 30.0%
GTAATCATAGTATTACGATC+AGG - Chr1:100446939-100446958 None:intergenic 30.0%
TAAAACTACAACAGGTACTT+GGG - Chr1:100449172-100449191 None:intergenic 30.0%
TAACGTTCATTGTAGACATA+GGG - Chr1:100449340-100449359 None:intergenic 30.0%
TACTAGAAGTAAACTCTCAT+CGG + Chr1:100449712-100449731 MsG0180006127.01.T01:intron 30.0%
TAGGGATGGTAAACAATTAA+AGG + Chr1:100446134-100446153 MsG0180006127.01.T01:CDS 30.0%
TATACCCAATCTTTCAGAAA+GGG - Chr1:100446464-100446483 None:intergenic 30.0%
TCGCTTTATGAATTGATGTT+TGG - Chr1:100449551-100449570 None:intergenic 30.0%
TGAAACAATTCATCATGCTA+GGG + Chr1:100448322-100448341 MsG0180006127.01.T01:intron 30.0%
TGTACAAGACAGATATTATG+AGG - Chr1:100448618-100448637 None:intergenic 30.0%
TTCTCCAAGAGTTATATCTT+TGG - Chr1:100451640-100451659 None:intergenic 30.0%
TTGATAAACCAATAATCCCA+AGG + Chr1:100449838-100449857 MsG0180006127.01.T01:intron 30.0%
TTTCAGGAACGAATATATGA+TGG + Chr1:100448977-100448996 MsG0180006127.01.T01:intron 30.0%
! AAACCGTTCTTTAGGAATTA+AGG + Chr1:100449763-100449782 MsG0180006127.01.T01:intron 30.0%
! AATGAAGAAAGGACTTTTCT+CGG + Chr1:100448564-100448583 MsG0180006127.01.T01:intron 30.0%
! AATTTTATTGAGGTCCATAG+TGG - Chr1:100447666-100447685 None:intergenic 30.0%
! ACTTTTATTGCTAGGAAGTT+TGG + Chr1:100447180-100447199 MsG0180006127.01.T01:intron 30.0%
! CATATTGGTAATTGTGAGTA+GGG - Chr1:100447292-100447311 None:intergenic 30.0%
! CTTTTATTGCTAGGAAGTTT+GGG + Chr1:100447181-100447200 MsG0180006127.01.T01:intron 30.0%
! GAAAGCTCACAATTTTATTG+AGG - Chr1:100447676-100447695 None:intergenic 30.0%
! GTGCTTTATTCTTTGAACTT+TGG - Chr1:100447531-100447550 None:intergenic 30.0%
! GTGGAAAATTTGCTTTATGT+TGG + Chr1:100447380-100447399 MsG0180006127.01.T01:CDS 30.0%
! TAGCACTTATATGGTTTTTG+GGG - Chr1:100446107-100446126 None:intergenic 30.0%
! TCATATTGGTAATTGTGAGT+AGG - Chr1:100447293-100447312 None:intergenic 30.0%
! TGTTCTTAATTTTCACAACG+GGG - Chr1:100446161-100446180 None:intergenic 30.0%
! TTAGGGTGATTTTGAATCTA+GGG + Chr1:100448415-100448434 MsG0180006127.01.T01:intron 30.0%
! TTTAAGTCTTGTCTAGTGAA+GGG + Chr1:100449807-100449826 MsG0180006127.01.T01:intron 30.0%
!! GAATCATCACTTTTATTGCT+AGG + Chr1:100447172-100447191 MsG0180006127.01.T01:intron 30.0%
!! GGGTTTAAATTGGTTTGTTT+AGG - Chr1:100449415-100449434 None:intergenic 30.0%
!! TTTTCCTCTTGAAATGGATT+TGG - Chr1:100451297-100451316 None:intergenic 30.0%
AAACAATTCATCATGCTAGG+GGG + Chr1:100448324-100448343 MsG0180006127.01.T01:intron 35.0%
AAATTAGGGAAGAAGATTGC+TGG + Chr1:100446797-100446816 MsG0180006127.01.T01:intron 35.0%
AACAGAGAATGCAAGATGAT+TGG - Chr1:100451031-100451050 None:intergenic 35.0%
AACGTTCATTGTAGACATAG+GGG - Chr1:100449339-100449358 None:intergenic 35.0%
AAGAACAATGAAGGAGAGAT+AGG + Chr1:100446174-100446193 MsG0180006127.01.T01:CDS 35.0%
AAGCAACTATAAGGGCTATT+CGG - Chr1:100449195-100449214 None:intergenic 35.0%
AATCCCTAACTTCCTAATTG+TGG + Chr1:100448272-100448291 MsG0180006127.01.T01:intron 35.0%
AATCTCCCATAAAGGTTCAT+AGG - Chr1:100451612-100451631 None:intergenic 35.0%
AATCTTTCAGAAAGGGACAA+TGG - Chr1:100446457-100446476 None:intergenic 35.0%
ACAGAGAATGCAAGATGATT+GGG - Chr1:100451030-100451049 None:intergenic 35.0%
ACATTGAATTCATGGGTAGT+TGG - Chr1:100451401-100451420 None:intergenic 35.0%
ACCTCCGAATTATTTAAGTC+CGG - Chr1:100447359-100447378 None:intergenic 35.0%
ACGACTCTAGACACTTTATT+AGG - Chr1:100447826-100447845 None:intergenic 35.0%
AGAACAATGAAGGAGAGATA+GGG + Chr1:100446175-100446194 MsG0180006127.01.T01:CDS 35.0%
AGTAGACACTTCTTTGTCTT+GGG + Chr1:100449363-100449382 MsG0180006127.01.T01:intron 35.0%
ATATGGAGTAGGAAATAGGT+AGG + Chr1:100447011-100447030 MsG0180006127.01.T01:intron 35.0%
ATCAATTCATAAAGCGAGAG+CGG + Chr1:100449554-100449573 MsG0180006127.01.T01:intron 35.0%
ATTTACGTAATGTTAGGCTC+AGG - Chr1:100450887-100450906 None:intergenic 35.0%
CAGGAATGACATTGAATTCA+TGG - Chr1:100451409-100451428 None:intergenic 35.0%
CATAAACTGCTCATCTAACT+TGG - Chr1:100446301-100446320 None:intergenic 35.0%
CATTGAATTCATGGGTAGTT+GGG - Chr1:100451400-100451419 None:intergenic 35.0%
CATTTATTCGATTGCTCCTT+TGG - Chr1:100447590-100447609 None:intergenic 35.0%
CCACCTAAACTTAAGAATCT+AGG + Chr1:100446350-100446369 MsG0180006127.01.T01:intron 35.0%
CCTAGATTCTTAAGTTTAGG+TGG - Chr1:100446353-100446372 None:intergenic 35.0%
CGAAGACAATAACCATCTAT+TGG - Chr1:100451545-100451564 None:intergenic 35.0%
CTAACGTTCATTGTAGACAT+AGG - Chr1:100449341-100449360 None:intergenic 35.0%
CTATACCCAATCTTTCAGAA+AGG - Chr1:100446465-100446484 None:intergenic 35.0%
CTATTCGGTAAAACTACAAC+AGG - Chr1:100449180-100449199 None:intergenic 35.0%
CTCATCAAACCTTGTGTTAA+TGG - Chr1:100446277-100446296 None:intergenic 35.0%
CTTTGAGCAAGTGTATGAAT+AGG + Chr1:100448079-100448098 MsG0180006127.01.T01:intron 35.0%
GAAAACACAAGTCTCTTTGA+AGG - Chr1:100448748-100448767 None:intergenic 35.0%
GAAACAATTCATCATGCTAG+GGG + Chr1:100448323-100448342 MsG0180006127.01.T01:intron 35.0%
GAATAAAGTTCAAGGGAGTT+TGG - Chr1:100447856-100447875 None:intergenic 35.0%
GAGGAACAAGACTTGTATTA+TGG + Chr1:100451372-100451391 MsG0180006127.01.T01:intron 35.0%
GATCTGAAAGTGAAAAGGTT+AGG + Chr1:100450995-100451014 MsG0180006127.01.T01:intron 35.0%
GATTACTAGAAGATGCATAG+AGG - Chr1:100449670-100449689 None:intergenic 35.0%
GGAAGTTGTTCATGAAATGA+GGG - Chr1:100451128-100451147 None:intergenic 35.0%
GGTTATTGTCTTCGACATTA+TGG + Chr1:100451551-100451570 MsG0180006127.01.T01:CDS 35.0%
GTAAAACTACAACAGGTACT+TGG - Chr1:100449173-100449192 None:intergenic 35.0%
GTGAAACAATTCATCATGCT+AGG + Chr1:100448321-100448340 MsG0180006127.01.T01:intron 35.0%
GTGGAAGCTATAATGATGAA+CGG + Chr1:100447489-100447508 MsG0180006127.01.T01:CDS 35.0%
TAAAAGAGCCTTGGGATTAT+TGG - Chr1:100449849-100449868 None:intergenic 35.0%
TACCTATTTCCTACTCCATA+TGG - Chr1:100447012-100447031 None:intergenic 35.0%
TAGAGTGATATAATGGTAGG+TGG + Chr1:100447150-100447169 MsG0180006127.01.T01:intron 35.0%
TATGGAGTAGGAAATAGGTA+GGG + Chr1:100447012-100447031 MsG0180006127.01.T01:intron 35.0%
TCTTCAAATAAGAGAGACCA+TGG - Chr1:100451105-100451124 None:intergenic 35.0%
TCTTGTACAAGAGCAAGAAA+AGG + Chr1:100448629-100448648 MsG0180006127.01.T01:intron 35.0%
TGGCTATAAATCTCCCATAA+AGG - Chr1:100451620-100451639 None:intergenic 35.0%
TGTTCCAAATCCATTTCAAG+AGG + Chr1:100451290-100451309 MsG0180006127.01.T01:intron 35.0%
TTATTTGTTTCATCTCGCGT+AGG - Chr1:100448377-100448396 None:intergenic 35.0%
TTCATCATTATAGCTTCCAC+CGG - Chr1:100447489-100447508 None:intergenic 35.0%
TTGAAAGAACCAATGTCCAA+AGG + Chr1:100447571-100447590 MsG0180006127.01.T01:intron 35.0%
TTTGGGTGAGTGTGAATTAA+GGG + Chr1:100447198-100447217 MsG0180006127.01.T01:intron 35.0%
! AATGGCTTTTCATTCTCCTA+TGG - Chr1:100446226-100446245 None:intergenic 35.0%
! AGGAACGAATATATGATGGA+AGG + Chr1:100448981-100449000 MsG0180006127.01.T01:intron 35.0%
! AGTTTAGGTGGCAATTTGTT+TGG - Chr1:100446341-100446360 None:intergenic 35.0%
! ATATATGATGGAAGGAGTCT+TGG + Chr1:100448989-100449008 MsG0180006127.01.T01:intron 35.0%
! ATTGTCCCTTTCTGAAAGAT+TGG + Chr1:100446456-100446475 MsG0180006127.01.T01:intron 35.0%
! CTTAGGGTGATTTTGAATCT+AGG + Chr1:100448414-100448433 MsG0180006127.01.T01:intron 35.0%
! CTTTCTGAAAGATTGGGTAT+AGG + Chr1:100446463-100446482 MsG0180006127.01.T01:intron 35.0%
! GAAGGTTTTTCCTCTTGAAA+TGG - Chr1:100451303-100451322 None:intergenic 35.0%
! GTAGATAATGATGGTGATGA+TGG + Chr1:100447416-100447435 MsG0180006127.01.T01:CDS 35.0%
! GTTTAAGTCTTGTCTAGTGA+AGG + Chr1:100449806-100449825 MsG0180006127.01.T01:intron 35.0%
! GTTTAGAGTCATTAGCTTGA+CGG - Chr1:100446510-100446529 None:intergenic 35.0%
! TAAAAATCAGTCTGCCGATT+AGG - Chr1:100451455-100451474 None:intergenic 35.0%
! TAAAGAAACATGAGGAGTAC+TGG + Chr1:100450810-100450829 MsG0180006127.01.T01:intron 35.0%
! TAGGGTGATTTTGAATCTAG+GGG + Chr1:100448416-100448435 MsG0180006127.01.T01:intron 35.0%
! TGAATTGATGTTTGGGATGA+TGG - Chr1:100449543-100449562 None:intergenic 35.0%
! TTGTCCCTTTCTGAAAGATT+GGG + Chr1:100446457-100446476 MsG0180006127.01.T01:intron 35.0%
!!! ACTTATATGGTTTTTGGGGT+TGG - Chr1:100446103-100446122 None:intergenic 35.0%
!!! ACTTTTGCTGCTTTTGCTTT+AGG + Chr1:100449146-100449165 MsG0180006127.01.T01:intron 35.0%
!!! GCACTTTTTTCTCCAATAGA+TGG + Chr1:100451530-100451549 MsG0180006127.01.T01:CDS 35.0%
AACACCTTGTCTTTGTTGCT+CGG - Chr1:100447553-100447572 None:intergenic 40.0%
AACCCACAGGTAGATAATGA+TGG + Chr1:100447407-100447426 MsG0180006127.01.T01:CDS 40.0%
AAGCTATAATGATGAACGGC+GGG + Chr1:100447493-100447512 MsG0180006127.01.T01:CDS 40.0%
AATGCTTCTCCTAAGTGTGA+GGG + Chr1:100447798-100447817 MsG0180006127.01.T01:intron 40.0%
AATTTGTGCAGCACTGCTTA+GGG + Chr1:100448398-100448417 MsG0180006127.01.T01:intron 40.0%
ACAAGCAAGATTCAAGTGTG+GGG + Chr1:100448828-100448847 MsG0180006127.01.T01:intron 40.0%
ACCACCACAATTAGGAAGTT+AGG - Chr1:100448279-100448298 None:intergenic 40.0%
ACTTGCTCAAAGATTGCAAC+TGG - Chr1:100448071-100448090 None:intergenic 40.0%
AGACAAAGCCATGTGTGATT+TGG + Chr1:100446412-100446431 MsG0180006127.01.T01:intron 40.0%
AGATCCTATGACACAAGGTA+GGG - Chr1:100446384-100446403 None:intergenic 40.0%
ATAGACTCAATGGGACTTTC+AGG - Chr1:100451428-100451447 None:intergenic 40.0%
ATAGAGATGAGTAGAGGAAG+AGG - Chr1:100447698-100447717 None:intergenic 40.0%
ATTAGGTGGCATAGACTCAA+TGG - Chr1:100451438-100451457 None:intergenic 40.0%
CAAGAGGAGAGATGTATCAT+TGG - Chr1:100451184-100451203 None:intergenic 40.0%
CACCATATGGAGTAGGAAAT+AGG + Chr1:100447007-100447026 MsG0180006127.01.T01:intron 40.0%
CACCATCATTATCTACCTGT+GGG - Chr1:100447412-100447431 None:intergenic 40.0%
CATTCTCTCCAAATCACACA+TGG - Chr1:100446423-100446442 None:intergenic 40.0%
CCACCACAATTAGGAAGTTA+GGG - Chr1:100448278-100448297 None:intergenic 40.0%
CGGAAGTTGTTCATGAAATG+AGG - Chr1:100451129-100451148 None:intergenic 40.0%
CTAGACTTATATCTGCTTGC+AGG + Chr1:100446910-100446929 MsG0180006127.01.T01:intron 40.0%
CTTAAATAATTCGGAGGTGG+TGG + Chr1:100447361-100447380 MsG0180006127.01.T01:CDS 40.0%
CTTCTTTGTCTTGGGATTGT+TGG + Chr1:100449371-100449390 MsG0180006127.01.T01:intron 40.0%
CTTGCTCAAAGATTGCAACT+GGG - Chr1:100448070-100448089 None:intergenic 40.0%
GAAGCTATAATGATGAACGG+CGG + Chr1:100447492-100447511 MsG0180006127.01.T01:CDS 40.0%
GACAAGCAAGATTCAAGTGT+GGG + Chr1:100448827-100448846 MsG0180006127.01.T01:intron 40.0%
GAGTAGACACTTCTTTGTCT+TGG + Chr1:100449362-100449381 MsG0180006127.01.T01:intron 40.0%
GGAATTTCATGCTCATGAGA+TGG - Chr1:100446256-100446275 None:intergenic 40.0%
GGACTTAAATAATTCGGAGG+TGG + Chr1:100447358-100447377 MsG0180006127.01.T01:CDS 40.0%
GTACAAGAGCAAGAAAAGGT+TGG + Chr1:100448633-100448652 MsG0180006127.01.T01:intron 40.0%
GTGTGAATTAAGGGATCAAG+AGG + Chr1:100447207-100447226 MsG0180006127.01.T01:intron 40.0%
GTTTCAGATCCTATGACACA+AGG - Chr1:100446389-100446408 None:intergenic 40.0%
GTTTGGGTGAGTGTGAATTA+AGG + Chr1:100447197-100447216 MsG0180006127.01.T01:intron 40.0%
TAAGGGATCAAGAGGATAGA+GGG + Chr1:100447215-100447234 MsG0180006127.01.T01:intron 40.0%
TAGCTTGACGGTTTAGAAAG+TGG - Chr1:100446498-100446517 None:intergenic 40.0%
TCACCATCATTATCTACCTG+TGG - Chr1:100447413-100447432 None:intergenic 40.0%
TCATGAGATGGTGAAACGAA+TGG - Chr1:100446244-100446263 None:intergenic 40.0%
TCATGTCAGTGAAATAGGCT+TGG + Chr1:100449688-100449707 MsG0180006127.01.T01:intron 40.0%
TCCGGACTTAAATAATTCGG+AGG + Chr1:100447355-100447374 MsG0180006127.01.T01:CDS 40.0%
TGGACATAGCAGCAACTAAA+AGG - Chr1:100448791-100448810 None:intergenic 40.0%
TGGATGGAATTTGTCATTGG+TGG + Chr1:100451717-100451736 MsG0180006127.01.T01:CDS 40.0%
TGTATTCACTATGTGGTGAG+AGG + Chr1:100451244-100451263 MsG0180006127.01.T01:intron 40.0%
TTAAGGGATCAAGAGGATAG+AGG + Chr1:100447214-100447233 MsG0180006127.01.T01:intron 40.0%
TTAGGTGGCATAGACTCAAT+GGG - Chr1:100451437-100451456 None:intergenic 40.0%
TTATGTTGGTACTAACCCAC+AGG + Chr1:100447394-100447413 MsG0180006127.01.T01:CDS 40.0%
TTGAATTCACAACTCCCTAG+CGG + Chr1:100449949-100449968 MsG0180006127.01.T01:intron 40.0%
TTGAGTCTATGCCACCTAAT+CGG + Chr1:100451438-100451457 MsG0180006127.01.T01:CDS 40.0%
TTGGATGTGCATACAAACCA+TGG + Chr1:100451085-100451104 MsG0180006127.01.T01:CDS 40.0%
! AGGGTGATTTTGAATCTAGG+GGG + Chr1:100448417-100448436 MsG0180006127.01.T01:intron 40.0%
! AGTGCTATTACTCTTAGGGA+TGG + Chr1:100446120-100446139 MsG0180006127.01.T01:CDS 40.0%
! GATTTTGAATCTAGGGGGAA+AGG + Chr1:100448422-100448441 MsG0180006127.01.T01:intron 40.0%
! GTTTTGTGCCTAAATTCCAG+AGG + Chr1:100446685-100446704 MsG0180006127.01.T01:intron 40.0%
! TAATTTGTGCAGCACTGCTT+AGG + Chr1:100448397-100448416 MsG0180006127.01.T01:intron 40.0%
! TTTTCCCTACCTTGTGTCAT+AGG + Chr1:100446377-100446396 MsG0180006127.01.T01:intron 40.0%
!! ACACATTGACTTGCACCATA+TGG + Chr1:100446994-100447013 MsG0180006127.01.T01:intron 40.0%
!! AGACTGATGTTGGGTTGAAT+AGG + Chr1:100448678-100448697 MsG0180006127.01.T01:intron 40.0%
!! GATAATGATGGTGATGATGG+TGG + Chr1:100447419-100447438 MsG0180006127.01.T01:CDS 40.0%
!! TGATGATGGTGGTGATAAAG+CGG + Chr1:100447430-100447449 MsG0180006127.01.T01:CDS 40.0%
!! TGGTGTTATTGTCTTCAACG+AGG + Chr1:100451353-100451372 MsG0180006127.01.T01:intron 40.0%
!!! ATGGTTTTTGGGGTTGGTTT+CGG - Chr1:100446097-100446116 None:intergenic 40.0%
!!! TGGTTTTGACCATGTTAGAG+AGG + Chr1:100451487-100451506 MsG0180006127.01.T01:CDS 40.0%
AACCCAACATCAGTCTCAAG+TGG - Chr1:100448674-100448693 None:intergenic 45.0%
AAGGGATCAAGAGGATAGAG+GGG + Chr1:100447216-100447235 MsG0180006127.01.T01:intron 45.0%
ACCCAACATCAGTCTCAAGT+GGG - Chr1:100448673-100448692 None:intergenic 45.0%
ACCCACTTGAGACTGATGTT+GGG + Chr1:100448669-100448688 MsG0180006127.01.T01:intron 45.0%
AGAGAAAATCCAATTGGGGG+GGG - Chr1:100450209-100450228 None:intergenic 45.0%
AGGACAAGAGGTCAGAGATT+GGG - Chr1:100450054-100450073 None:intergenic 45.0%
AGTTAAAATGGGCGGGAGAA+TGG + Chr1:100448227-100448246 MsG0180006127.01.T01:intron 45.0%
ATGCTTCTCCTAAGTGTGAG+GGG + Chr1:100447799-100447818 MsG0180006127.01.T01:intron 45.0%
ATTATCCTTCCCCCACATGT+TGG - Chr1:100448255-100448274 None:intergenic 45.0%
ATTCATCATGCTAGGGGGAA+AGG + Chr1:100448329-100448348 MsG0180006127.01.T01:intron 45.0%
CAATGCTTCTCCTAAGTGTG+AGG + Chr1:100447797-100447816 MsG0180006127.01.T01:intron 45.0%
CAGATCCTATGACACAAGGT+AGG - Chr1:100446385-100446404 None:intergenic 45.0%
CCCTAACTTCCTAATTGTGG+TGG + Chr1:100448275-100448294 MsG0180006127.01.T01:intron 45.0%
CCGGAGAGAAAATCCAATTG+GGG - Chr1:100450213-100450232 None:intergenic 45.0%
CCTATGGCTTTCTCACTTTG+AGG - Chr1:100446210-100446229 None:intergenic 45.0%
CCTCAAAGTGAGAAAGCCAT+AGG + Chr1:100446207-100446226 MsG0180006127.01.T01:intron 45.0%
CGGAGAGAAAATCCAATTGG+GGG - Chr1:100450212-100450231 None:intergenic 45.0%
CTAGATTCACCGTCTTAACG+TGG + Chr1:100449463-100449482 MsG0180006127.01.T01:intron 45.0%
CTCATCGGACTTTCATCGAA+AGG + Chr1:100449727-100449746 MsG0180006127.01.T01:intron 45.0%
CTTGCTTGTCCTCAAGCAAA+AGG - Chr1:100448817-100448836 None:intergenic 45.0%
GAACTATCAGTCAAACACGC+AGG - Chr1:100451680-100451699 None:intergenic 45.0%
GAGAGAAAATCCAATTGGGG+GGG - Chr1:100450210-100450229 None:intergenic 45.0%
GAGGAGAGATGTATCATTGG+AGG - Chr1:100451181-100451200 None:intergenic 45.0%
GAGTAGGGTCATGAGTTCTA+AGG - Chr1:100447277-100447296 None:intergenic 45.0%
GCAAAAGTTATCCAGAGAGG+TGG - Chr1:100449134-100449153 None:intergenic 45.0%
GCAGCAAAAGTTATCCAGAG+AGG - Chr1:100449137-100449156 None:intergenic 45.0%
GCCGGAGAGAAAATCCAATT+GGG - Chr1:100450214-100450233 None:intergenic 45.0%
GCTAAGGGAAACCGTTCTTT+AGG + Chr1:100449755-100449774 MsG0180006127.01.T01:intron 45.0%
GGACAAGCAAGATTCAAGTG+TGG + Chr1:100448826-100448845 MsG0180006127.01.T01:intron 45.0%
GGACTTTCATCGAAAGGTGA+GGG + Chr1:100449733-100449752 MsG0180006127.01.T01:intron 45.0%
GGAGAGAAAATCCAATTGGG+GGG - Chr1:100450211-100450230 None:intergenic 45.0%
GGAGTCTTGGAGCAAAAGAA+AGG + Chr1:100449002-100449021 MsG0180006127.01.T01:intron 45.0%
GGGCAGATCTGAAAGTGAAA+AGG + Chr1:100450990-100451009 MsG0180006127.01.T01:intron 45.0%
GTATCATTGGAGGATGAGTG+AGG - Chr1:100451171-100451190 None:intergenic 45.0%
TAAATTCCAGAGGCTAGGCA+CGG + Chr1:100446695-100446714 MsG0180006127.01.T01:intron 45.0%
TCAAACTGTGGAAGCGAAAG+CGG + Chr1:100449497-100449516 MsG0180006127.01.T01:intron 45.0%
TCGATTGCTCCTTTGGACAT+TGG - Chr1:100447583-100447602 None:intergenic 45.0%
TGGAGCAAAAGAAAGGAGTC+TGG + Chr1:100449009-100449028 MsG0180006127.01.T01:intron 45.0%
TGTCCTCAAGCAAAAGGCAA+TGG - Chr1:100448811-100448830 None:intergenic 45.0%
TTCACCTCCAAAGTCCACTA+TGG + Chr1:100447649-100447668 MsG0180006127.01.T01:intron 45.0%
TTGCACCATGAACAAGAAGC+CGG + Chr1:100447467-100447486 MsG0180006127.01.T01:CDS 45.0%
! AAAGGAGTCTGGAGCTGATT+TGG + Chr1:100449020-100449039 MsG0180006127.01.T01:intron 45.0%
! AAATCAGTCTGCCGATTAGG+TGG - Chr1:100451452-100451471 None:intergenic 45.0%
! CAACTGGGTGCTTTTCTCAT+TGG - Chr1:100448055-100448074 None:intergenic 45.0%
! CCCCAATTGGATTTTCTCTC+CGG + Chr1:100450210-100450229 MsG0180006127.01.T01:intron 45.0%
! TGACTTGCACCATATGGAGT+AGG + Chr1:100447000-100447019 MsG0180006127.01.T01:intron 45.0%
! TGTCCATTGCCTTTTGCTTG+AGG + Chr1:100448805-100448824 MsG0180006127.01.T01:intron 45.0%
! TTGTGCGAAACAGACTTGCT+AGG - Chr1:100450923-100450942 None:intergenic 45.0%
!! AAGAAGAGTATCGTTCCGCT+AGG - Chr1:100449967-100449986 None:intergenic 45.0%
!! AGAAGAGTATCGTTCCGCTA+GGG - Chr1:100449966-100449985 None:intergenic 45.0%
!! AGGGTCATGAGTTCTAAGGA+AGG - Chr1:100447273-100447292 None:intergenic 45.0%
!! ATAGTGGACTTTGGAGGTGA+AGG - Chr1:100447650-100447669 None:intergenic 45.0%
!! TTGAGGTCCATAGTGGACTT+TGG - Chr1:100447659-100447678 None:intergenic 45.0%
!! TTGCGGTTTGGCTCTATCAA+CGG + Chr1:100450015-100450034 MsG0180006127.01.T01:intron 45.0%
!! TTGGGTTGAATAGGTTCACG+AGG + Chr1:100448687-100448706 MsG0180006127.01.T01:intron 45.0%
!!! TTTTGGGGTTGGTTTCGGTT+TGG - Chr1:100446092-100446111 None:intergenic 45.0%
!! CAAAAAAAAAAAAAAAAATT+AGG + Chr1:100446782-100446801 MsG0180006127.01.T01:intron 5.0%
!!! ATAAAGTTATTTTTAAAATT+TGG + Chr1:100450450-100450469 MsG0180006127.01.T01:intron 5.0%
AAAGGGGCTGCAGATGCTTA+GGG - Chr1:100448487-100448506 None:intergenic 50.0%
ACTCTAAACGAGCGCTTCGT+GGG + Chr1:100446521-100446540 MsG0180006127.01.T01:intron 50.0%
AGAAAATCCAATTGGGGGGG+GGG - Chr1:100450207-100450226 None:intergenic 50.0%
AGAATGGCACCAACATGTGG+GGG + Chr1:100448243-100448262 MsG0180006127.01.T01:intron 50.0%
AGGGAGTCACCACCACAATT+AGG - Chr1:100448287-100448306 None:intergenic 50.0%
AGTTATCCAGAGAGGTGGCA+CGG - Chr1:100449129-100449148 None:intergenic 50.0%
ATAATGATGAACGGCGGGCA+TGG + Chr1:100447498-100447517 MsG0180006127.01.T01:CDS 50.0%
CACCCACTTGAGACTGATGT+TGG + Chr1:100448668-100448687 MsG0180006127.01.T01:intron 50.0%
CATCGAAAGGTGAGGGCTAA+GGG + Chr1:100449740-100449759 MsG0180006127.01.T01:intron 50.0%
CATCGAGAAGACTTCCTGTG+AGG + Chr1:100448452-100448471 MsG0180006127.01.T01:intron 50.0%
CGCCGGAGAGAAAATCCAAT+TGG - Chr1:100450215-100450234 None:intergenic 50.0%
CGGACTTTCATCGAAAGGTG+AGG + Chr1:100449732-100449751 MsG0180006127.01.T01:intron 50.0%
GACTTCTCAAGTACCCCAAC+AGG + Chr1:100446029-100446048 MsG0180006127.01.T01:CDS 50.0%
GAGAAAATCCAATTGGGGGG+GGG - Chr1:100450208-100450227 None:intergenic 50.0%
GAGAATGGCACCAACATGTG+GGG + Chr1:100448242-100448261 MsG0180006127.01.T01:intron 50.0%
GAGGACAAGAGGTCAGAGAT+TGG - Chr1:100450055-100450074 None:intergenic 50.0%
GGAGAATGGCACCAACATGT+GGG + Chr1:100448241-100448260 MsG0180006127.01.T01:intron 50.0%
GTGCCTAAATTCCAGAGGCT+AGG + Chr1:100446690-100446709 MsG0180006127.01.T01:intron 50.0%
TAGGGGCTATCTATCCTCAC+AGG - Chr1:100448469-100448488 None:intergenic 50.0%
TATTAGGCCCCCTCACACTT+AGG - Chr1:100447810-100447829 None:intergenic 50.0%
TCATCGAAAGGTGAGGGCTA+AGG + Chr1:100449739-100449758 MsG0180006127.01.T01:intron 50.0%
TCCTCTTGTGTCAAAGACCG+AGG + Chr1:100451196-100451215 MsG0180006127.01.T01:CDS 50.0%
TCTTGTGTCAAAGACCGAGG+CGG + Chr1:100451199-100451218 MsG0180006127.01.T01:CDS 50.0%
TGAGGAAGTAGCCACCTGTT+GGG - Chr1:100446046-100446065 None:intergenic 50.0%
TGCTTCTCCTAAGTGTGAGG+GGG + Chr1:100447800-100447819 MsG0180006127.01.T01:intron 50.0%
TTCTCAAGTACCCCAACAGG+TGG + Chr1:100446032-100446051 MsG0180006127.01.T01:CDS 50.0%
! AGCACCGAGCAACAAAGACA+AGG + Chr1:100447546-100447565 MsG0180006127.01.T01:CDS 50.0%
! CTGGCTCAGATGATGATGCA+AGG + Chr1:100446816-100446835 MsG0180006127.01.T01:intron 50.0%
! GCTCAGATGATGATGCAAGG+AGG + Chr1:100446819-100446838 MsG0180006127.01.T01:intron 50.0%
! GGATTTTCTCTCCGGCGATA+AGG + Chr1:100450218-100450237 MsG0180006127.01.T01:intron 50.0%
! GGTTTGGTCTAGGAGGACTT+CGG - Chr1:100446076-100446095 None:intergenic 50.0%
! TCTCGCGTAGGAAGTCGTTT+TGG - Chr1:100448365-100448384 None:intergenic 50.0%
!! AAGCAGGGTGCCACTAAAAG+GGG - Chr1:100450158-100450177 None:intergenic 50.0%
!! AGGTCCATAGTGGACTTTGG+AGG - Chr1:100447656-100447675 None:intergenic 50.0%
!! CAAGCAGGGTGCCACTAAAA+GGG - Chr1:100450159-100450178 None:intergenic 50.0%
!! GGTTGGTTTCGGTTTGGTCT+AGG - Chr1:100446086-100446105 None:intergenic 50.0%
!! GTGCCTAGCCTCTGGAATTT+AGG - Chr1:100446696-100446715 None:intergenic 50.0%
!! TGATGGTGGTGATAAAGCGG+AGG + Chr1:100447433-100447452 MsG0180006127.01.T01:CDS 50.0%
!! TGGTTTCGGTTTGGTCTAGG+AGG - Chr1:100446083-100446102 None:intergenic 50.0%
!! TTCCACCGGCTTCTTGTTCA+TGG - Chr1:100447475-100447494 None:intergenic 50.0%
AAAATCCAATTGGGGGGGGG+GGG - Chr1:100450205-100450224 None:intergenic 55.0%
AAAGGGGGGATGGGGATGAT+TGG - Chr1:100450142-100450161 None:intergenic 55.0%
AACTGTGGAAGCGAAAGCGG+AGG + Chr1:100449500-100449519 MsG0180006127.01.T01:intron 55.0%
AAGGGGCTGCAGATGCTTAG+GGG - Chr1:100448486-100448505 None:intergenic 55.0%
ACTGGAAGCTGGAGGACAAG+AGG - Chr1:100450066-100450085 None:intergenic 55.0%
ACTGTGGAAGCGAAAGCGGA+GGG + Chr1:100449501-100449520 MsG0180006127.01.T01:intron 55.0%
CAAAGGGGCTGCAGATGCTT+AGG - Chr1:100448488-100448507 None:intergenic 55.0%
CACCATGAACAAGAAGCCGG+TGG + Chr1:100447470-100447489 MsG0180006127.01.T01:CDS 55.0%
CCCAAGTCAGAAGCTTGGCA+CGG + Chr1:100449082-100449101 MsG0180006127.01.T01:intron 55.0%
CCGTGCCAAGCTTCTGACTT+GGG - Chr1:100449085-100449104 None:intergenic 55.0%
GAAAATCCAATTGGGGGGGG+GGG - Chr1:100450206-100450225 None:intergenic 55.0%
GACTCTAAACGAGCGCTTCG+TGG + Chr1:100446520-100446539 MsG0180006127.01.T01:intron 55.0%
GAGACCGAGGAGAAGGAAAG+CGG - Chr1:100450111-100450130 None:intergenic 55.0%
GAGGAAGTAGCCACCTGTTG+GGG - Chr1:100446045-100446064 None:intergenic 55.0%
GAGGACTTCGGAGGATTGTG+AGG - Chr1:100446064-100446083 None:intergenic 55.0%
GCCTCGGTCTTTGACACAAG+AGG - Chr1:100451200-100451219 None:intergenic 55.0%
GGGAGAATGGCACCAACATG+TGG + Chr1:100448240-100448259 MsG0180006127.01.T01:intron 55.0%
GGTGGTGATAAAGCGGAGGT+AGG + Chr1:100447437-100447456 MsG0180006127.01.T01:CDS 55.0%
GTGAGGAAGTAGCCACCTGT+TGG - Chr1:100446047-100446066 None:intergenic 55.0%
TCGATGTGAGACCGAGGAGA+AGG - Chr1:100450118-100450137 None:intergenic 55.0%
TGCCACTAAAAGGGGGGATG+GGG - Chr1:100450150-100450169 None:intergenic 55.0%
TTACCGGCGTTCCTTATCGC+CGG - Chr1:100450232-100450251 None:intergenic 55.0%
TTGGTCTAGGAGGACTTCGG+AGG - Chr1:100446073-100446092 None:intergenic 55.0%
! ATCCCCATCCCCCCTTTTAG+TGG + Chr1:100450145-100450164 MsG0180006127.01.T01:intron 55.0%
! CCTTTTAGTGGCACCCTGCT+TGG + Chr1:100450157-100450176 MsG0180006127.01.T01:intron 55.0%
! CGAGAGCGGAGCTTTGATGT+TGG + Chr1:100449568-100449587 MsG0180006127.01.T01:intron 55.0%
! CGTGCCAAGCTTCTGACTTG+GGG - Chr1:100449084-100449103 None:intergenic 55.0%
! GTGCCACTAAAAGGGGGGAT+GGG - Chr1:100450151-100450170 None:intergenic 55.0%
!! AGCAGGGTGCCACTAAAAGG+GGG - Chr1:100450157-100450176 None:intergenic 55.0%
!! ATTGGCTCGATGTGAGACCG+AGG - Chr1:100450124-100450143 None:intergenic 55.0%
!! CCAAGCAGGGTGCCACTAAA+AGG - Chr1:100450160-100450179 None:intergenic 55.0%
!! GTGCCAAGCTTCTGACTTGG+GGG - Chr1:100449083-100449102 None:intergenic 55.0%
AAATCCAATTGGGGGGGGGG+GGG - Chr1:100450204-100450223 None:intergenic 60.0%
AGCGAGCGAGAGACTGAGAG+AGG - Chr1:100450285-100450304 None:intergenic 60.0%
CTAAACGAGCGCTTCGTGGG+AGG + Chr1:100446524-100446543 MsG0180006127.01.T01:intron 60.0%
GAGCCCCCAAGTCAGAAGCT+TGG + Chr1:100449077-100449096 MsG0180006127.01.T01:intron 60.0%
GCCGTGCCAAGCTTCTGACT+TGG - Chr1:100449086-100449105 None:intergenic 60.0%
GGAGAAGGAAAGCGGCGACA+AGG - Chr1:100450103-100450122 None:intergenic 60.0%
TCATCACGAGACCTCCGCCT+CGG - Chr1:100451216-100451235 None:intergenic 60.0%
TCTCCGGCGATAAGGAACGC+CGG + Chr1:100450226-100450245 MsG0180006127.01.T01:intron 60.0%
TGGCACCAACATGTGGGGGA+AGG + Chr1:100448247-100448266 MsG0180006127.01.T01:intron 60.0%
TGTGTCAAAGACCGAGGCGG+AGG + Chr1:100451202-100451221 MsG0180006127.01.T01:CDS 60.0%
! GTCGCCGCTTTCCTTCTCCT+CGG + Chr1:100450104-100450123 MsG0180006127.01.T01:intron 60.0%
!! GCAGGGTGCCACTAAAAGGG+GGG - Chr1:100450156-100450175 None:intergenic 60.0%
!! GGTGCCACTAAAAGGGGGGA+TGG - Chr1:100450152-100450171 None:intergenic 60.0%
AACGCCGGTAAGCCTGCCTG+CGG + Chr1:100450241-100450260 MsG0180006127.01.T01:intron 65.0%
AAGCGGCGACAAGGCGATCG+AGG - Chr1:100450094-100450113 None:intergenic 65.0%
AAGGCGATCGAGGTCGGGAC+TGG - Chr1:100450084-100450103 None:intergenic 65.0%
AATCCAATTGGGGGGGGGGG+GGG - Chr1:100450203-100450222 None:intergenic 65.0%
ACCACCGCAGGCAGGCTTAC+CGG - Chr1:100450248-100450267 None:intergenic 65.0%
AGGTCGGGACTGGAAGCTGG+AGG - Chr1:100450074-100450093 None:intergenic 65.0%
CGGCCGTGCCAACCTTAGCA+CGG - Chr1:100449109-100449128 None:intergenic 65.0%
GCGACAAGGCGATCGAGGTC+GGG - Chr1:100450089-100450108 None:intergenic 65.0%
GGCCCGTGCTAAGGTTGGCA+CGG + Chr1:100449103-100449122 MsG0180006127.01.T01:intron 65.0%
GGCCGTGCCAACCTTAGCAC+GGG - Chr1:100449108-100449127 None:intergenic 65.0%
GGCGACAAGGCGATCGAGGT+CGG - Chr1:100450090-100450109 None:intergenic 65.0%
TCGAGGTCGGGACTGGAAGC+TGG - Chr1:100450077-100450096 None:intergenic 65.0%
AGGCACGGCCGTGCCACCAT+AGG - Chr1:100446727-100446746 None:intergenic 70.0%
ATCCAATTGGGGGGGGGGGG+GGG - Chr1:100450202-100450221 None:intergenic 70.0%
CCTGCACAACCACCGCAGGC+AGG - Chr1:100450256-100450275 None:intergenic 70.0%
CCTGCCTGCGGTGGTTGTGC+AGG + Chr1:100450253-100450272 MsG0180006127.01.T01:intron 70.0%
CGGCCGTGCCACCATAGGCA+CGG - Chr1:100446722-100446741 None:intergenic 70.0%
CTAGGCACGGCCCGTGCCTA+TGG + Chr1:100446708-100446727 MsG0180006127.01.T01:intron 70.0%
CTCGCCTGCACAACCACCGC+AGG - Chr1:100450260-100450279 None:intergenic 70.0%
GCTTGGCACGGCCCGTGCTA+AGG + Chr1:100449094-100449113 MsG0180006127.01.T01:intron 70.0%
GGCACGGCCCGTGCTAAGGT+TGG + Chr1:100449098-100449117 MsG0180006127.01.T01:intron 70.0%
GGCCCGTGCCTATGGTGGCA+CGG + Chr1:100446716-100446735 MsG0180006127.01.T01:intron 70.0%
GGCCGTGCCACCATAGGCAC+GGG - Chr1:100446721-100446740 None:intergenic 70.0%
CACGGGCCGTGCCTAGCCTC+TGG - Chr1:100446704-100446723 None:intergenic 75.0%
GCACGGCCGTGCCACCTCTC+TGG + Chr1:100449120-100449139 MsG0180006127.01.T01:intron 75.0%
GCCGGTAAGCCTGCCTGCGG+TGG + Chr1:100450244-100450263 MsG0180006127.01.T01:intron 75.0%
GGCACGGCCCGTGCCTATGG+TGG + Chr1:100446711-100446730 MsG0180006127.01.T01:intron 75.0%
GGGGGGAAGGGGGCCAAGCA+GGG - Chr1:100450173-100450192 None:intergenic 75.0%
TCCAATTGGGGGGGGGGGGG+GGG - Chr1:100450201-100450220 None:intergenic 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG - Chr1:100450198-100450217 None:intergenic 80.0%
! CAATTGGGGGGGGGGGGGGG+GGG - Chr1:100450199-100450218 None:intergenic 80.0%
! CCAATTGGGGGGGGGGGGGG+GGG - Chr1:100450200-100450219 None:intergenic 80.0%
! GGGGGGGAAGGGGGCCAAGC+AGG - Chr1:100450174-100450193 None:intergenic 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - Chr1:100450197-100450216 None:intergenic 85.0%
! CCCCCCCCCCCCCCCCCAAT+TGG + Chr1:100450197-100450216 MsG0180006127.01.T01:intron 85.0%
! GGGGGGGGGGGGGGGGAAGG+GGG - Chr1:100450183-100450202 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGAAG+GGG - Chr1:100450184-100450203 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGAA+GGG - Chr1:100450185-100450204 None:intergenic 90.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - Chr1:100450196-100450215 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGGA+AGG - Chr1:100450186-100450205 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - Chr1:100450195-100450214 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100446015 100451823 100446015 ID=MsG0180006127.01;Name=MsG0180006127.01
Chr1 mRNA 100446015 100451823 100446015 ID=MsG0180006127.01.T01;Parent=MsG0180006127.01;Name=MsG0180006127.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|419
Chr1 exon 100446015 100446213 100446015 ID=MsG0180006127.01.T01:exon:12723;Parent=MsG0180006127.01.T01
Chr1 exon 100447219 100447567 100447219 ID=MsG0180006127.01.T01:exon:12724;Parent=MsG0180006127.01.T01
Chr1 exon 100450996 100451258 100450996 ID=MsG0180006127.01.T01:exon:12725;Parent=MsG0180006127.01.T01
Chr1 exon 100451375 100451823 100451375 ID=MsG0180006127.01.T01:exon:12726;Parent=MsG0180006127.01.T01
Chr1 CDS 100446015 100446213 100446015 ID=MsG0180006127.01.T01:cds;Parent=MsG0180006127.01.T01
Chr1 CDS 100447219 100447567 100447219 ID=MsG0180006127.01.T01:cds;Parent=MsG0180006127.01.T01
Chr1 CDS 100450996 100451258 100450996 ID=MsG0180006127.01.T01:cds;Parent=MsG0180006127.01.T01
Chr1 CDS 100451375 100451823 100451375 ID=MsG0180006127.01.T01:cds;Parent=MsG0180006127.01.T01
Gene Sequence

>MsG0180006127.01.T01

ATGCATGAGACTCAGACTTCTCAAGTACCCCAACAGGTGGCTACTTCCTCACAATCCTCCGAAGTCCTCCTAGACCAAACCGAAACCAACCCCAAAAACCATATAAGTGCTATTACTCTTAGGGATGGTAAACAATTAAAGGACCCCGTTGTGAAAATTAAGAACAATGAAGGAGAGATAGGGAGTGATGAGCCTCAAAGGATCAAGAGGATAGAGGGGAACTATTATCTAGACTTATATACTACTTTGTCCTTCCTTAGAACTCATGACCCTACTCACAATTACCAATATGAATGGAAAATTATTAGAGCTTATTGTTTGATTATTCTATCTAATCCGGACTTAAATAATTCGGAGGTGGTGGAAAATTTGCTTTATGTTGGTACTAACCCACAGGTAGATAATGATGGTGATGATGGTGGTGATAAAGCGGAGGTAGGTGCAAACTTGCACCATGAACAAGAAGCCGGTGGAAGCTATAATGATGAACGGCGGGCATGGATGCAAACCAAAGTTCAAAGAATAAAGCACCGAGCAACAAAGACAAGATCTGAAAGTGAAAAGGTTAGGAATCACATACCCAATCATCTTGCATTCTCTGTTTTGTCAAAACTTCCGTTAAAATCTTTGAAACGATTTGGATGTGCATACAAACCATGGTCTCTCTTATTTGAAGACCCTCATTTCATGAACAACTTCCGCACTAATTTCATATCTATTCCTCACTCATCCTCCAATGATACATCTCTCCTCTTGTGTCAAAGACCGAGGCGGAGGTCTCGTGATGACTTTTCTTTGTATTCACTATGTGGAACAAGACTTGTATTATGGAACCCAACTACCCATGAATTCAATGTCATTCCTGAAAGTCCCATTGAGTCTATGCCACCTAATCGGCAGACTGATTTTTATTATCATGGGTTTGGTTTTGACCATGTTAGAGAGGATATTAAAATTATTAGGCGTGCACTTTTTTCTCCAATAGATGGTTATTGTCTTCGACATTATGGTGTGCAACTGAAAGATGTGCCATGTAATGAAATATCCTATGAACCTTTATGGGAGATTTATAGCCAAAGATATAACTCTTGGAGAATACTTGATGTTAATATGCCTGCGTGTTTGACTGATAGTTCAAATCAACGATTGTATATGGATGGAATTTGTCATTGGTGGTCTGAAAGTGAAAACTATGATGAACATTTCTTGGTGTCATTTAACTTGAGCAATGAGTTGTTTTTACAACAATCATACCCTTAG
Protein sequence

>MsG0180006127.01.T01

MHETQTSQVPQQVATSSQSSEVLLDQTETNPKNHISAITLRDGKQLKDPVVKIKNNEGEIGSDEPQRIKRIEGNYYLDLYTTLSFLRTHDPTHNYQYEWKIIRAYCLIILSNPDLNNSEVVENLLYVGTNPQVDNDGDDGGDKAEVGANLHHEQEAGGSYNDERRAWMQTKVQRIKHRATKTRSESEKVRNHIPNHLAFSVLSKLPLKSLKRFGCAYKPWSLLFEDPHFMNNFRTNFISIPHSSSNDTSLLLCQRPRRRSRDDFSLYSLCGTRLVLWNPTTHEFNVIPESPIESMPPNRQTDFYYHGFGFDHVREDIKIIRRALFSPIDGYCLRHYGVQLKDVPCNEISYEPLWEIYSQRYNSWRILDVNMPACLTDSSNQRLYMDGICHWWSESENYDEHFLVSFNLSNELFLQQSYP*