Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043800.01.T01 | PNY06113.1 | 50.472 | 212 | 90 | 5 | 7 | 211 | 51 | 254 | 1.57E-56 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043800.01.T01 | A0A2K3NSW3 | 50.472 | 212 | 90 | 5 | 7 | 211 | 51 | 254 | 7.52e-57 | 194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043800.01.T01 | MTR_5g096900 | 52.195 | 205 | 88 | 5 | 7 | 210 | 49 | 244 | 3.27e-57 | 184 |
| MsG0880043800.01.T01 | MTR_5g037680 | 43.602 | 211 | 90 | 8 | 7 | 209 | 45 | 234 | 1.71e-36 | 132 |
| MsG0880043800.01.T01 | MTR_5g097820 | 38.318 | 214 | 110 | 8 | 3 | 209 | 56 | 254 | 1.27e-34 | 124 |
| MsG0880043800.01.T01 | MTR_7g017040 | 38.710 | 217 | 96 | 7 | 7 | 211 | 53 | 244 | 1.29e-34 | 127 |
| MsG0880043800.01.T01 | MTR_2g038680 | 39.914 | 233 | 87 | 9 | 7 | 208 | 53 | 263 | 4.05e-33 | 123 |
| MsG0880043800.01.T01 | MTR_7g017130 | 35.294 | 221 | 101 | 9 | 7 | 211 | 55 | 249 | 1.12e-30 | 116 |
| MsG0880043800.01.T01 | MTR_7g017170 | 35.294 | 221 | 101 | 9 | 7 | 211 | 55 | 249 | 1.19e-30 | 116 |
| MsG0880043800.01.T01 | MTR_5g097350 | 36.199 | 221 | 101 | 7 | 8 | 211 | 54 | 251 | 1.31e-30 | 116 |
| MsG0880043800.01.T01 | MTR_8g041440 | 70.886 | 79 | 8 | 1 | 7 | 85 | 52 | 115 | 1.40e-30 | 109 |
| MsG0880043800.01.T01 | MTR_5g096910 | 41.011 | 178 | 85 | 8 | 39 | 211 | 89 | 251 | 1.68e-30 | 115 |
| MsG0880043800.01.T01 | MTR_8g012090 | 39.815 | 216 | 73 | 10 | 7 | 211 | 53 | 222 | 1.97e-30 | 114 |
| MsG0880043800.01.T01 | MTR_8g063440 | 37.383 | 214 | 99 | 8 | 7 | 208 | 49 | 239 | 6.33e-30 | 114 |
| MsG0880043800.01.T01 | MTR_4g028680 | 37.069 | 232 | 101 | 11 | 3 | 211 | 44 | 253 | 5.77e-29 | 112 |
| MsG0880043800.01.T01 | MTR_2g022000 | 34.322 | 236 | 105 | 7 | 7 | 211 | 53 | 269 | 7.35e-29 | 112 |
| MsG0880043800.01.T01 | MTR_5g075370 | 35.470 | 234 | 95 | 12 | 7 | 209 | 47 | 255 | 8.30e-29 | 113 |
| MsG0880043800.01.T01 | MTR_4g055820 | 35.268 | 224 | 100 | 9 | 7 | 208 | 51 | 251 | 8.68e-29 | 110 |
| MsG0880043800.01.T01 | MTR_4g028660 | 34.375 | 224 | 104 | 8 | 7 | 211 | 53 | 252 | 3.89e-28 | 109 |
| MsG0880043800.01.T01 | MTR_4g027450 | 34.375 | 224 | 104 | 8 | 7 | 211 | 53 | 252 | 3.89e-28 | 109 |
| MsG0880043800.01.T01 | MTR_1g076810 | 36.735 | 196 | 96 | 7 | 7 | 194 | 55 | 230 | 1.17e-27 | 110 |
| MsG0880043800.01.T01 | MTR_6g086825 | 36.638 | 232 | 89 | 12 | 7 | 211 | 107 | 307 | 1.57e-27 | 108 |
| MsG0880043800.01.T01 | MTR_2g021950 | 35.185 | 216 | 107 | 7 | 7 | 208 | 53 | 249 | 1.67e-27 | 107 |
| MsG0880043800.01.T01 | MTR_3g011120 | 38.049 | 205 | 99 | 9 | 11 | 208 | 55 | 238 | 3.38e-27 | 106 |
| MsG0880043800.01.T01 | MTR_5g059430 | 35.043 | 234 | 99 | 9 | 7 | 209 | 63 | 274 | 4.42e-27 | 107 |
| MsG0880043800.01.T01 | MTR_2g021800 | 33.755 | 237 | 106 | 7 | 7 | 211 | 53 | 270 | 6.99e-27 | 106 |
| MsG0880043800.01.T01 | MTR_5g097330 | 35.371 | 229 | 95 | 10 | 7 | 208 | 53 | 255 | 8.45e-27 | 106 |
| MsG0880043800.01.T01 | MTR_8g464770 | 38.278 | 209 | 91 | 10 | 12 | 208 | 54 | 236 | 9.99e-27 | 105 |
| MsG0880043800.01.T01 | MTR_5g069390 | 35.135 | 222 | 108 | 9 | 7 | 209 | 63 | 267 | 1.81e-26 | 106 |
| MsG0880043800.01.T01 | MTR_7g079640 | 34.434 | 212 | 102 | 8 | 5 | 211 | 48 | 227 | 2.48e-26 | 104 |
| MsG0880043800.01.T01 | MTR_7g104710 | 37.799 | 209 | 78 | 11 | 7 | 209 | 54 | 216 | 5.30e-26 | 102 |
| MsG0880043800.01.T01 | MTR_8g041490 | 81.132 | 53 | 10 | 0 | 33 | 85 | 54 | 106 | 8.53e-26 | 96.7 |
| MsG0880043800.01.T01 | MTR_8g046310 | 38.249 | 217 | 91 | 10 | 7 | 211 | 53 | 238 | 1.09e-25 | 102 |
| MsG0880043800.01.T01 | MTR_4g130330 | 37.156 | 218 | 90 | 9 | 14 | 209 | 49 | 241 | 1.19e-25 | 102 |
| MsG0880043800.01.T01 | MTR_7g016930 | 35.849 | 212 | 93 | 8 | 7 | 211 | 53 | 228 | 2.91e-25 | 100 |
| MsG0880043800.01.T01 | MTR_8g013000 | 34.934 | 229 | 98 | 10 | 7 | 210 | 47 | 249 | 3.24e-25 | 102 |
| MsG0880043800.01.T01 | MTR_1g053510 | 35.714 | 238 | 99 | 9 | 7 | 211 | 52 | 268 | 3.45e-25 | 101 |
| MsG0880043800.01.T01 | MTR_7g069550 | 32.018 | 228 | 107 | 8 | 7 | 211 | 51 | 253 | 5.80e-25 | 100 |
| MsG0880043800.01.T01 | MTR_5g024260 | 34.272 | 213 | 109 | 7 | 5 | 208 | 57 | 247 | 6.68e-25 | 100 |
| MsG0880043800.01.T01 | MTR_5g074850 | 35.319 | 235 | 93 | 13 | 7 | 210 | 74 | 280 | 1.23e-24 | 101 |
| MsG0880043800.01.T01 | MTR_5g049560 | 40.252 | 159 | 75 | 3 | 7 | 156 | 1 | 148 | 1.85e-24 | 97.4 |
| MsG0880043800.01.T01 | MTR_5g064700 | 36.207 | 232 | 100 | 14 | 9 | 208 | 1 | 216 | 2.93e-24 | 98.6 |
| MsG0880043800.01.T01 | MTR_2g034700 | 34.928 | 209 | 113 | 9 | 5 | 209 | 49 | 238 | 3.47e-24 | 98.6 |
| MsG0880043800.01.T01 | MTR_8g039500 | 34.466 | 206 | 105 | 8 | 7 | 208 | 49 | 228 | 3.79e-24 | 98.2 |
| MsG0880043800.01.T01 | MTR_4g028750 | 32.883 | 222 | 107 | 9 | 7 | 209 | 53 | 251 | 3.87e-24 | 99.0 |
| MsG0880043800.01.T01 | MTR_0129s0070 | 37.387 | 222 | 93 | 12 | 7 | 208 | 54 | 249 | 5.54e-24 | 98.2 |
| MsG0880043800.01.T01 | MTR_1g007410 | 37.069 | 232 | 85 | 13 | 7 | 208 | 59 | 259 | 6.06e-24 | 98.2 |
| MsG0880043800.01.T01 | MTR_4g028510 | 33.636 | 220 | 109 | 8 | 7 | 209 | 54 | 253 | 8.59e-24 | 98.2 |
| MsG0880043800.01.T01 | MTR_2g104280 | 35.455 | 220 | 103 | 9 | 11 | 208 | 51 | 253 | 1.60e-23 | 97.1 |
| MsG0880043800.01.T01 | MTR_0831s0010 | 31.944 | 216 | 103 | 8 | 7 | 208 | 87 | 272 | 1.91e-23 | 97.1 |
| MsG0880043800.01.T01 | MTR_4g117550 | 34.956 | 226 | 95 | 11 | 7 | 208 | 54 | 251 | 2.69e-23 | 96.3 |
| MsG0880043800.01.T01 | MTR_4g102410 | 33.784 | 222 | 107 | 8 | 7 | 208 | 98 | 299 | 3.30e-23 | 96.7 |
| MsG0880043800.01.T01 | MTR_8g041270 | 36.652 | 221 | 99 | 10 | 11 | 208 | 52 | 254 | 3.82e-23 | 96.3 |
| MsG0880043800.01.T01 | MTR_6g070880 | 31.776 | 214 | 94 | 9 | 9 | 194 | 71 | 260 | 1.00e-22 | 92.8 |
| MsG0880043800.01.T01 | MTR_6g071420 | 31.776 | 214 | 94 | 9 | 9 | 194 | 71 | 260 | 1.00e-22 | 92.8 |
| MsG0880043800.01.T01 | MTR_0129s0120 | 36.937 | 222 | 94 | 12 | 7 | 208 | 54 | 249 | 1.27e-22 | 94.7 |
| MsG0880043800.01.T01 | MTR_5g097680 | 33.333 | 243 | 105 | 12 | 7 | 209 | 54 | 279 | 1.29e-22 | 94.7 |
| MsG0880043800.01.T01 | MTR_6g478230 | 36.866 | 217 | 90 | 11 | 7 | 211 | 64 | 245 | 1.40e-22 | 94.7 |
| MsG0880043800.01.T01 | MTR_6g090180 | 32.751 | 229 | 107 | 9 | 7 | 209 | 84 | 291 | 1.54e-22 | 94.7 |
| MsG0880043800.01.T01 | MTR_0054s0090 | 36.207 | 232 | 93 | 13 | 7 | 209 | 54 | 259 | 1.87e-22 | 94.4 |
| MsG0880043800.01.T01 | MTR_5g096630 | 31.839 | 223 | 110 | 6 | 7 | 208 | 55 | 256 | 9.35e-22 | 92.4 |
| MsG0880043800.01.T01 | MTR_5g097220 | 33.613 | 238 | 99 | 8 | 7 | 209 | 50 | 263 | 2.17e-21 | 91.3 |
| MsG0880043800.01.T01 | MTR_1g007430 | 37.688 | 199 | 84 | 10 | 7 | 188 | 33 | 208 | 2.66e-21 | 90.1 |
| MsG0880043800.01.T01 | MTR_6g080680 | 33.482 | 224 | 101 | 11 | 7 | 211 | 56 | 250 | 3.16e-21 | 90.9 |
| MsG0880043800.01.T01 | MTR_6g090250 | 33.195 | 241 | 103 | 10 | 7 | 209 | 48 | 268 | 4.06e-21 | 90.5 |
| MsG0880043800.01.T01 | MTR_2g104260 | 32.727 | 220 | 109 | 9 | 11 | 208 | 51 | 253 | 4.62e-21 | 88.6 |
| MsG0880043800.01.T01 | MTR_5g074800 | 31.674 | 221 | 110 | 6 | 9 | 211 | 1 | 198 | 5.61e-21 | 89.4 |
| MsG0880043800.01.T01 | MTR_5g037190 | 29.907 | 214 | 106 | 8 | 7 | 211 | 53 | 231 | 1.46e-20 | 86.7 |
| MsG0880043800.01.T01 | MTR_0054s0100 | 34.934 | 229 | 102 | 12 | 7 | 209 | 54 | 261 | 1.64e-20 | 89.0 |
| MsG0880043800.01.T01 | MTR_2g065840 | 32.227 | 211 | 119 | 7 | 7 | 209 | 49 | 243 | 1.65e-20 | 88.6 |
| MsG0880043800.01.T01 | MTR_5g092860 | 31.330 | 233 | 90 | 11 | 7 | 209 | 39 | 231 | 2.64e-20 | 87.8 |
| MsG0880043800.01.T01 | MTR_2g066170 | 33.333 | 210 | 111 | 9 | 7 | 208 | 49 | 237 | 2.76e-20 | 87.8 |
| MsG0880043800.01.T01 | MTR_2g065860 | 34.450 | 209 | 114 | 8 | 7 | 208 | 49 | 241 | 5.33e-20 | 87.0 |
| MsG0880043800.01.T01 | MTR_8g046200 | 32.432 | 259 | 106 | 13 | 3 | 211 | 44 | 283 | 7.72e-20 | 87.0 |
| MsG0880043800.01.T01 | MTR_2g021770 | 32.766 | 235 | 101 | 9 | 7 | 208 | 49 | 259 | 1.86e-19 | 85.9 |
| MsG0880043800.01.T01 | MTR_2g104340 | 33.032 | 221 | 104 | 9 | 11 | 211 | 51 | 247 | 2.36e-19 | 85.5 |
| MsG0880043800.01.T01 | MTR_0134s0060 | 33.197 | 244 | 92 | 13 | 7 | 209 | 49 | 262 | 2.86e-19 | 85.5 |
| MsG0880043800.01.T01 | MTR_4g007940 | 31.527 | 203 | 102 | 9 | 20 | 208 | 4 | 183 | 4.30e-19 | 84.3 |
| MsG0880043800.01.T01 | MTR_1g007450 | 36.000 | 225 | 101 | 11 | 7 | 211 | 49 | 250 | 4.89e-19 | 84.7 |
| MsG0880043800.01.T01 | MTR_6g078010 | 33.028 | 218 | 98 | 10 | 7 | 209 | 1 | 185 | 5.38e-19 | 84.0 |
| MsG0880043800.01.T01 | MTR_6g461660 | 34.862 | 218 | 111 | 7 | 7 | 209 | 56 | 257 | 6.25e-19 | 84.3 |
| MsG0880043800.01.T01 | MTR_4g014370 | 30.579 | 242 | 106 | 11 | 7 | 208 | 48 | 267 | 7.97e-19 | 84.0 |
| MsG0880043800.01.T01 | MTR_5g092850 | 32.751 | 229 | 100 | 12 | 7 | 210 | 53 | 252 | 8.16e-19 | 84.0 |
| MsG0880043800.01.T01 | MTR_8g467670 | 31.429 | 210 | 104 | 10 | 13 | 208 | 57 | 240 | 1.03e-18 | 83.6 |
| MsG0880043800.01.T01 | MTR_5g086590 | 39.130 | 115 | 63 | 4 | 100 | 211 | 6 | 116 | 1.19e-18 | 81.6 |
| MsG0880043800.01.T01 | MTR_8g036970 | 32.075 | 212 | 74 | 10 | 7 | 209 | 35 | 185 | 1.22e-18 | 83.2 |
| MsG0880043800.01.T01 | MTR_0129s0050 | 32.922 | 243 | 89 | 13 | 7 | 208 | 51 | 260 | 1.56e-18 | 83.2 |
| MsG0880043800.01.T01 | MTR_5g091150 | 36.842 | 171 | 62 | 9 | 51 | 211 | 2 | 136 | 1.88e-18 | 80.1 |
| MsG0880043800.01.T01 | MTR_2g066200 | 31.905 | 210 | 114 | 9 | 7 | 208 | 49 | 237 | 3.79e-18 | 82.0 |
| MsG0880043800.01.T01 | MTR_7g111700 | 37.073 | 205 | 79 | 11 | 1 | 178 | 32 | 213 | 8.84e-18 | 80.9 |
| MsG0880043800.01.T01 | MTR_8g064890 | 30.909 | 220 | 112 | 8 | 7 | 209 | 53 | 249 | 1.33e-17 | 80.5 |
| MsG0880043800.01.T01 | MTR_8g063330 | 30.000 | 220 | 109 | 11 | 7 | 208 | 51 | 243 | 3.27e-17 | 79.7 |
| MsG0880043800.01.T01 | MTR_5g072060 | 32.367 | 207 | 114 | 5 | 7 | 211 | 43 | 225 | 7.09e-17 | 79.0 |
| MsG0880043800.01.T01 | MTR_2g064950 | 30.638 | 235 | 98 | 11 | 7 | 211 | 47 | 246 | 1.17e-16 | 77.8 |
| MsG0880043800.01.T01 | MTR_8g018110 | 29.412 | 221 | 101 | 7 | 7 | 194 | 51 | 249 | 2.04e-16 | 77.0 |
| MsG0880043800.01.T01 | MTR_8g033090 | 29.362 | 235 | 114 | 7 | 7 | 210 | 51 | 264 | 5.39e-16 | 75.9 |
| MsG0880043800.01.T01 | MTR_8g033000 | 28.512 | 242 | 105 | 9 | 7 | 209 | 1 | 213 | 6.72e-16 | 75.5 |
| MsG0880043800.01.T01 | MTR_8g033110 | 29.661 | 236 | 111 | 9 | 7 | 209 | 51 | 264 | 2.93e-15 | 73.9 |
| MsG0880043800.01.T01 | MTR_1g047080 | 30.806 | 211 | 106 | 8 | 7 | 209 | 1 | 179 | 4.06e-15 | 72.8 |
| MsG0880043800.01.T01 | MTR_1g050308 | 32.804 | 189 | 96 | 9 | 7 | 188 | 71 | 235 | 8.88e-15 | 72.0 |
| MsG0880043800.01.T01 | MTR_6g079790 | 35.374 | 147 | 76 | 8 | 80 | 211 | 12 | 154 | 1.54e-14 | 71.2 |
| MsG0880043800.01.T01 | MTR_5g094350 | 30.172 | 232 | 91 | 10 | 7 | 208 | 50 | 240 | 4.20e-14 | 69.7 |
| MsG0880043800.01.T01 | MTR_6g087620 | 29.050 | 179 | 75 | 8 | 39 | 209 | 1 | 135 | 5.33e-14 | 69.3 |
| MsG0880043800.01.T01 | MTR_7g023800 | 32.547 | 212 | 84 | 12 | 9 | 209 | 1 | 164 | 1.32e-13 | 68.6 |
| MsG0880043800.01.T01 | MTR_5g043605 | 35.766 | 137 | 64 | 7 | 84 | 211 | 72 | 193 | 1.70e-13 | 68.6 |
| MsG0880043800.01.T01 | MTR_1g050312 | 33.553 | 152 | 72 | 7 | 39 | 188 | 16 | 140 | 3.60e-13 | 67.0 |
| MsG0880043800.01.T01 | MTR_8g063350 | 32.099 | 162 | 92 | 10 | 60 | 211 | 50 | 203 | 4.27e-13 | 67.4 |
| MsG0880043800.01.T01 | MTR_2g066150 | 34.000 | 150 | 72 | 7 | 7 | 155 | 49 | 172 | 6.07e-12 | 64.3 |
| MsG0880043800.01.T01 | MTR_5g068490 | 31.915 | 141 | 74 | 6 | 73 | 211 | 16 | 136 | 5.88e-11 | 60.8 |
| MsG0880043800.01.T01 | MTR_4g016000 | 35.849 | 106 | 55 | 5 | 112 | 208 | 2 | 103 | 6.75e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTCAAGTGTTTCATTC+TGG | 0.152822 | 8:-30906844 | MsG0880043800.01.T01:CDS |
| TTGGGTTCAACGAGTGTTAA+TGG | 0.252735 | 8:-30907079 | MsG0880043800.01.T01:CDS |
| CGGTGTTAAAGATGACTTTA+AGG | 0.265999 | 8:-30906903 | MsG0880043800.01.T01:CDS |
| CTTGACGTCTTGTCAGATTT+AGG | 0.270260 | 8:+30907254 | None:intergenic |
| TGTATGCATTCTTACTACTA+TGG | 0.290976 | 8:-30907049 | MsG0880043800.01.T01:CDS |
| GTGTCATCCCCATCCACTTT+TGG | 0.319083 | 8:+30907172 | None:intergenic |
| AATTATCTTGTTTGTTATAA+CGG | 0.362442 | 8:-30906923 | MsG0880043800.01.T01:CDS |
| AGAATAGAGTTAAATTAGAT+TGG | 0.362567 | 8:-30907195 | MsG0880043800.01.T01:CDS |
| TCACTCAAGTGTTTCATTCT+GGG | 0.369909 | 8:-30906843 | MsG0880043800.01.T01:CDS |
| TCATCATTGTCCTCTTGAAT+AGG | 0.370128 | 8:+30907145 | None:intergenic |
| TGATGACCCACCATATGATT+TGG | 0.370890 | 8:-30907128 | MsG0880043800.01.T01:CDS |
| CATGTGCACTTCTTCAGTTC+CGG | 0.409630 | 8:+30906754 | None:intergenic |
| AAGATGACTTTAAGGTGATT+CGG | 0.455262 | 8:-30906895 | MsG0880043800.01.T01:CDS |
| GTCTTGAGTTCATTGGTAGT+TGG | 0.461601 | 8:+30907001 | None:intergenic |
| AGGAATTGTCTTGAGTTCAT+TGG | 0.465114 | 8:+30906994 | None:intergenic |
| TAAATTAGATTGGCCAAAAG+TGG | 0.467258 | 8:-30907185 | MsG0880043800.01.T01:CDS |
| TCTTCAGTTCCGGTATAAGT+TGG | 0.492792 | 8:+30906764 | None:intergenic |
| GCATCCACTTCCAAATCATA+TGG | 0.496431 | 8:+30907118 | None:intergenic |
| ACATGGATGGGATGTCTCAT+TGG | 0.500107 | 8:-30906736 | MsG0880043800.01.T01:CDS |
| TCAGTTCCGGTATAAGTTGG+AGG | 0.510881 | 8:+30906767 | None:intergenic |
| ACCCAAAATTTCAAAACAAG+AGG | 0.521612 | 8:+30907096 | None:intergenic |
| CTTGAGTGAGGATCATCAAA+TGG | 0.523089 | 8:+30906857 | None:intergenic |
| CATATGCCTCCAACTTATAC+CGG | 0.530356 | 8:-30906773 | MsG0880043800.01.T01:CDS |
| ACTGAAGAAGTGCACATGGA+TGG | 0.532324 | 8:-30906749 | MsG0880043800.01.T01:CDS |
| TTAGATTGGCCAAAAGTGGA+TGG | 0.547025 | 8:-30907181 | MsG0880043800.01.T01:CDS |
| TAGATTGGCCAAAAGTGGAT+GGG | 0.553278 | 8:-30907180 | MsG0880043800.01.T01:CDS |
| GGATGGGATGTCTCATTGGT+TGG | 0.554386 | 8:-30906732 | MsG0880043800.01.T01:CDS |
| ACATATCATGATAATAAGAA+TGG | 0.556921 | 8:+30907284 | None:intergenic |
| TCCACTTCCAAATCATATGG+TGG | 0.579050 | 8:+30907121 | None:intergenic |
| CTGAAGAAGTGCACATGGAT+GGG | 0.586443 | 8:-30906748 | MsG0880043800.01.T01:CDS |
| CCGCAATAACTTCTTATCAA+AGG | 0.593540 | 8:-30907308 | MsG0880043800.01.T01:CDS |
| AGATTGGCCAAAAGTGGATG+GGG | 0.594772 | 8:-30907179 | MsG0880043800.01.T01:CDS |
| CGGAACTGAAGAAGTGCACA+TGG | 0.604268 | 8:-30906753 | MsG0880043800.01.T01:CDS |
| CCCACCATATGATTTGGAAG+TGG | 0.610528 | 8:-30907122 | MsG0880043800.01.T01:CDS |
| CCACTTCCAAATCATATGGT+GGG | 0.618163 | 8:+30907122 | None:intergenic |
| GAATTGAGAAACTTACCTTG+TGG | 0.631900 | 8:-30907027 | MsG0880043800.01.T01:CDS |
| TGACACACAACCTATTCAAG+AGG | 0.642214 | 8:-30907155 | MsG0880043800.01.T01:CDS |
| TGATTAACATACGACTGATG+AGG | 0.663206 | 8:+30906950 | None:intergenic |
| ATTGGTAGTTGGATTCCACA+AGG | 0.663464 | 8:+30907012 | None:intergenic |
| CCTTTGATAAGAAGTTATTG+CGG | 0.679677 | 8:+30907308 | None:intergenic |
| CAGAATGAAACACTTGAGTG+AGG | 0.680568 | 8:+30906845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCTTGTTTGTTATAA+CGG | - | Chr8:30907138-30907157 | MsG0880043800.01.T01:CDS | 15.0% |
| !! | ACATATCATGATAATAAGAA+TGG | + | Chr8:30906780-30906799 | None:intergenic | 20.0% |
| !! | AGAATAGAGTTAAATTAGAT+TGG | - | Chr8:30906866-30906885 | MsG0880043800.01.T01:CDS | 20.0% |
| !!! | ATGTTTTGTATTTGCTTTTT+GGG | - | Chr8:30906833-30906852 | MsG0880043800.01.T01:CDS | 20.0% |
| !!! | CATGTTTTGTATTTGCTTTT+TGG | - | Chr8:30906832-30906851 | MsG0880043800.01.T01:CDS | 25.0% |
| !!! | TGTTTTGTATTTGCTTTTTG+GGG | - | Chr8:30906834-30906853 | MsG0880043800.01.T01:CDS | 25.0% |
| ACCCAAAATTTCAAAACAAG+AGG | + | Chr8:30906968-30906987 | None:intergenic | 30.0% | |
| CCTTTGATAAGAAGTTATTG+CGG | + | Chr8:30906756-30906775 | None:intergenic | 30.0% | |
| TGTATGCATTCTTACTACTA+TGG | - | Chr8:30907012-30907031 | MsG0880043800.01.T01:CDS | 30.0% | |
| ! | TAAATTAGATTGGCCAAAAG+TGG | - | Chr8:30906876-30906895 | MsG0880043800.01.T01:CDS | 30.0% |
| !! | AAGATGACTTTAAGGTGATT+CGG | - | Chr8:30907166-30907185 | MsG0880043800.01.T01:CDS | 30.0% |
| !!! | GCCTCTTGTTTTGAAATTTT+GGG | - | Chr8:30906964-30906983 | MsG0880043800.01.T01:CDS | 30.0% |
| !!! | TGCCTCTTGTTTTGAAATTT+TGG | - | Chr8:30906963-30906982 | MsG0880043800.01.T01:CDS | 30.0% |
| ACACAAAAATCAGGAATGGA+AGG | + | Chr8:30907090-30907109 | None:intergenic | 35.0% | |
| AGGAATTGTCTTGAGTTCAT+TGG | + | Chr8:30907070-30907089 | None:intergenic | 35.0% | |
| AGGTACACAAAAATCAGGAA+TGG | + | Chr8:30907094-30907113 | None:intergenic | 35.0% | |
| CCGCAATAACTTCTTATCAA+AGG | - | Chr8:30906753-30906772 | MsG0880043800.01.T01:CDS | 35.0% | |
| CTCTTGGAGAAAAATTGACA+TGG | - | Chr8:30907263-30907282 | MsG0880043800.01.T01:CDS | 35.0% | |
| GAATTGAGAAACTTACCTTG+TGG | - | Chr8:30907034-30907053 | MsG0880043800.01.T01:CDS | 35.0% | |
| TCACTCAAGTGTTTCATTCT+GGG | - | Chr8:30907218-30907237 | MsG0880043800.01.T01:CDS | 35.0% | |
| TCATCATTGTCCTCTTGAAT+AGG | + | Chr8:30906919-30906938 | None:intergenic | 35.0% | |
| TGATGAGGTACACAAAAATC+AGG | + | Chr8:30907099-30907118 | None:intergenic | 35.0% | |
| TGATTAACATACGACTGATG+AGG | + | Chr8:30907114-30907133 | None:intergenic | 35.0% | |
| ! | CGGTGTTAAAGATGACTTTA+AGG | - | Chr8:30907158-30907177 | MsG0880043800.01.T01:CDS | 35.0% |
| !!! | TGTATTTGCTTTTTGGGGAA+AGG | - | Chr8:30906839-30906858 | MsG0880043800.01.T01:CDS | 35.0% |
| ATAGCCTACGCAAAAACTCT+TGG | - | Chr8:30907247-30907266 | MsG0880043800.01.T01:CDS | 40.0% | |
| CAGAATGAAACACTTGAGTG+AGG | + | Chr8:30907219-30907238 | None:intergenic | 40.0% | |
| CATATGCCTCCAACTTATAC+CGG | - | Chr8:30907288-30907307 | MsG0880043800.01.T01:CDS | 40.0% | |
| CCACTTCCAAATCATATGGT+GGG | + | Chr8:30906942-30906961 | None:intergenic | 40.0% | |
| CTCACTCAAGTGTTTCATTC+TGG | - | Chr8:30907217-30907236 | MsG0880043800.01.T01:CDS | 40.0% | |
| CTTGACGTCTTGTCAGATTT+AGG | + | Chr8:30906810-30906829 | None:intergenic | 40.0% | |
| CTTGAGTGAGGATCATCAAA+TGG | + | Chr8:30907207-30907226 | None:intergenic | 40.0% | |
| GCATCCACTTCCAAATCATA+TGG | + | Chr8:30906946-30906965 | None:intergenic | 40.0% | |
| TCCACTTCCAAATCATATGG+TGG | + | Chr8:30906943-30906962 | None:intergenic | 40.0% | |
| TCTTCAGTTCCGGTATAAGT+TGG | + | Chr8:30907300-30907319 | None:intergenic | 40.0% | |
| TGACACACAACCTATTCAAG+AGG | - | Chr8:30906906-30906925 | MsG0880043800.01.T01:CDS | 40.0% | |
| TGATGACCCACCATATGATT+TGG | - | Chr8:30906933-30906952 | MsG0880043800.01.T01:CDS | 40.0% | |
| TTGGGTTCAACGAGTGTTAA+TGG | - | Chr8:30906982-30907001 | MsG0880043800.01.T01:CDS | 40.0% | |
| ! | ATTGGTAGTTGGATTCCACA+AGG | + | Chr8:30907052-30907071 | None:intergenic | 40.0% |
| ! | GTCTTGAGTTCATTGGTAGT+TGG | + | Chr8:30907063-30907082 | None:intergenic | 40.0% |
| ! | TAGATTGGCCAAAAGTGGAT+GGG | - | Chr8:30906881-30906900 | MsG0880043800.01.T01:CDS | 40.0% |
| ! | TTAGATTGGCCAAAAGTGGA+TGG | - | Chr8:30906880-30906899 | MsG0880043800.01.T01:CDS | 40.0% |
| ! | TTCTCCAAGAGTTTTTGCGT+AGG | + | Chr8:30907254-30907273 | None:intergenic | 40.0% |
| ACATGGATGGGATGTCTCAT+TGG | - | Chr8:30907325-30907344 | MsG0880043800.01.T01:CDS | 45.0% | |
| CATGTGCACTTCTTCAGTTC+CGG | + | Chr8:30907310-30907329 | None:intergenic | 45.0% | |
| ! | ACTGAAGAAGTGCACATGGA+TGG | - | Chr8:30907312-30907331 | MsG0880043800.01.T01:CDS | 45.0% |
| ! | AGATTGGCCAAAAGTGGATG+GGG | - | Chr8:30906882-30906901 | MsG0880043800.01.T01:CDS | 45.0% |
| ! | CCCACCATATGATTTGGAAG+TGG | - | Chr8:30906939-30906958 | MsG0880043800.01.T01:CDS | 45.0% |
| ! | CTGAAGAAGTGCACATGGAT+GGG | - | Chr8:30907313-30907332 | MsG0880043800.01.T01:CDS | 45.0% |
| ! | TCAGTTCCGGTATAAGTTGG+AGG | + | Chr8:30907297-30907316 | None:intergenic | 45.0% |
| GGATGGGATGTCTCATTGGT+TGG | - | Chr8:30907329-30907348 | MsG0880043800.01.T01:CDS | 50.0% | |
| ! | CGGAACTGAAGAAGTGCACA+TGG | - | Chr8:30907308-30907327 | MsG0880043800.01.T01:CDS | 50.0% |
| ! | GTGTCATCCCCATCCACTTT+TGG | + | Chr8:30906892-30906911 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 30906724 | 30907359 | 30906724 | ID=MsG0880043800.01;Name=MsG0880043800.01 |
| Chr8 | mRNA | 30906724 | 30907359 | 30906724 | ID=MsG0880043800.01.T01;Parent=MsG0880043800.01;Name=MsG0880043800.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|211 |
| Chr8 | exon | 30906724 | 30907359 | 30906724 | ID=MsG0880043800.01.T01:exon:7464;Parent=MsG0880043800.01.T01 |
| Chr8 | CDS | 30906724 | 30907359 | 30906724 | ID=MsG0880043800.01.T01:cds;Parent=MsG0880043800.01.T01 |
| Gene Sequence |
| Protein sequence |
