AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030121.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030121.01.T02 MTR_5g097820 87.742 155 19 0 1 155 1 155 1.01e-97 283
MsG0580030121.01.T02 MTR_5g037680 69.853 136 37 1 18 149 3 138 6.88e-59 189
MsG0580030121.01.T02 MTR_5g069390 55.488 164 63 4 1 155 1 163 7.18e-54 177
MsG0580030121.01.T02 MTR_5g059430 50.888 169 69 3 1 155 1 169 2.46e-50 166
MsG0580030121.01.T02 MTR_8g012090 53.191 141 44 5 8 148 3 121 5.13e-37 130
MsG0580030121.01.T02 MTR_7g017130 50.735 136 54 3 16 151 13 135 6.81e-37 130
MsG0580030121.01.T02 MTR_7g017170 50.735 136 54 3 16 151 13 135 6.99e-37 131
MsG0580030121.01.T02 MTR_5g097650 46.980 149 60 4 7 155 6 135 8.40e-35 119
MsG0580030121.01.T02 MTR_5g037190 49.265 136 56 4 16 151 11 133 7.75e-34 119
MsG0580030121.01.T02 MTR_2g038680 51.034 145 54 6 8 150 5 134 3.68e-33 121
MsG0580030121.01.T02 MTR_5g096900 51.064 141 54 6 11 143 2 135 2.56e-32 117
MsG0580030121.01.T02 MTR_5g072060 49.593 123 52 3 21 143 4 116 5.80e-31 117
MsG0580030121.01.T02 MTR_7g069550 44.295 149 66 6 7 152 1 135 8.32e-30 112
MsG0580030121.01.T02 MTR_5g096630 42.857 147 68 4 7 152 6 137 1.64e-29 111
MsG0580030121.01.T02 MTR_8g013000 47.407 135 57 5 16 149 5 126 1.85e-29 111
MsG0580030121.01.T02 MTR_4g102410 45.270 148 63 7 7 152 49 180 3.51e-29 111
MsG0580030121.01.T02 MTR_4g117550 58.095 105 39 2 10 113 8 108 3.62e-29 110
MsG0580030121.01.T02 MTR_1g007410 48.889 135 59 5 22 155 21 146 6.98e-29 109
MsG0580030121.01.T02 MTR_1g076810 46.212 132 58 4 18 149 13 131 1.13e-28 110
MsG0580030121.01.T02 MTR_8g063440 44.056 143 63 6 8 150 1 126 1.19e-28 108
MsG0580030121.01.T02 MTR_1g007450 46.667 150 63 7 11 158 4 138 6.93e-28 107
MsG0580030121.01.T02 MTR_8g041440 51.485 101 30 1 15 115 7 88 1.27e-27 99.8
MsG0580030121.01.T02 MTR_8g033140 44.604 139 66 2 10 148 6 133 1.43e-27 106
MsG0580030121.01.T02 MTR_5g024260 40.278 144 66 4 8 148 7 133 1.73e-27 106
MsG0580030121.01.T02 MTR_7g017040 45.070 142 60 5 7 148 4 127 1.83e-27 105
MsG0580030121.01.T02 MTR_6g090180 44.776 134 61 4 10 143 38 158 4.23e-27 105
MsG0580030121.01.T02 MTR_6g465360 44.681 141 57 7 10 148 53 174 7.23e-27 102
MsG0580030121.01.T02 MTR_7g079640 44.444 135 61 4 16 150 9 129 1.51e-26 103
MsG0580030121.01.T02 MTR_5g097350 48.800 125 45 4 32 148 25 138 1.75e-26 103
MsG0580030121.01.T02 MTR_4g055820 43.571 140 66 4 16 155 9 135 2.50e-26 102
MsG0580030121.01.T02 MTR_0129s0070 50.467 107 51 1 7 113 1 105 3.24e-26 102
MsG0580030121.01.T02 MTR_2g022000 54.128 109 41 3 10 111 5 111 3.55e-26 102
MsG0580030121.01.T02 MTR_6g086825 41.176 136 71 1 10 145 57 183 4.29e-26 102
MsG0580030121.01.T02 MTR_5g097330 45.333 150 56 8 5 149 2 130 4.68e-26 102
MsG0580030121.01.T02 MTR_0129s0120 51.402 107 50 1 7 113 1 105 6.43e-26 101
MsG0580030121.01.T02 MTR_5g091140 42.667 150 67 6 5 148 34 170 7.59e-26 101
MsG0580030121.01.T02 MTR_6g079770 48.175 137 52 8 14 148 10 129 1.97e-25 100
MsG0580030121.01.T02 MTR_2g064950 45.185 135 58 6 16 149 5 124 3.26e-25 99.8
MsG0580030121.01.T02 MTR_6g080680 41.781 146 63 5 1 143 1 127 7.14e-25 99.0
MsG0580030121.01.T02 MTR_6g461660 43.478 138 65 3 10 147 10 134 1.81e-24 97.8
MsG0580030121.01.T02 MTR_5g097220 49.515 103 46 2 13 115 3 99 2.04e-24 97.8
MsG0580030121.01.T02 MTR_1g053510 42.537 134 66 2 10 143 5 127 2.25e-24 97.8
MsG0580030121.01.T02 MTR_2g021770 51.376 109 34 3 14 111 5 105 9.69e-24 95.9
MsG0580030121.01.T02 MTR_4g028680 39.865 148 72 4 8 153 1 133 1.17e-23 95.5
MsG0580030121.01.T02 MTR_2g034700 50.962 104 46 2 10 113 4 102 1.39e-23 95.1
MsG0580030121.01.T02 MTR_8g039500 45.283 106 46 2 8 113 1 94 1.58e-23 94.7
MsG0580030121.01.T02 MTR_7g016930 43.571 140 50 4 16 155 11 121 1.82e-23 94.4
MsG0580030121.01.T02 MTR_2g021950 40.769 130 64 3 21 149 14 131 2.15e-23 94.7
MsG0580030121.01.T02 MTR_7g104710 42.177 147 60 6 1 143 1 126 2.20e-23 94.0
MsG0580030121.01.T02 MTR_8g046220 50.000 104 50 1 10 113 4 105 2.84e-23 94.7
MsG0580030121.01.T02 MTR_0054s0090 46.429 140 53 6 10 145 8 129 3.43e-23 94.4
MsG0580030121.01.T02 MTR_5g096910 51.376 109 49 3 7 114 2 107 3.64e-23 94.4
MsG0580030121.01.T02 MTR_4g028750 39.355 155 67 6 13 158 2 138 3.74e-23 94.4
MsG0580030121.01.T02 MTR_4g028660 37.162 148 75 4 8 153 1 132 5.36e-23 93.6
MsG0580030121.01.T02 MTR_4g027450 37.162 148 75 4 8 153 1 132 5.36e-23 93.6
MsG0580030121.01.T02 MTR_1g050308 46.296 108 52 3 8 115 23 124 7.38e-23 92.8
MsG0580030121.01.T02 MTR_2g066150 44.340 106 48 2 8 113 1 95 7.42e-23 92.8
MsG0580030121.01.T02 MTR_0134s0060 42.553 141 60 6 10 148 3 124 9.50e-23 93.2
MsG0580030121.01.T02 MTR_2g104280 42.759 145 65 6 14 155 7 136 1.23e-22 92.8
MsG0580030121.01.T02 MTR_1g098180 46.078 102 52 2 10 110 5 104 1.64e-22 92.0
MsG0580030121.01.T02 MTR_8g046310 40.268 149 79 4 8 155 1 140 2.89e-22 91.7
MsG0580030121.01.T02 MTR_6g478230 42.424 132 65 3 15 145 18 139 4.66e-22 91.3
MsG0580030121.01.T02 MTR_6g079810 46.269 134 55 5 13 142 56 176 5.35e-22 91.3
MsG0580030121.01.T02 MTR_0054s0100 44.286 140 56 6 10 145 8 129 7.09e-22 90.9
MsG0580030121.01.T02 MTR_2g104340 43.262 141 58 7 7 145 1 121 7.63e-22 90.5
MsG0580030121.01.T02 MTR_8g464770 44.531 128 60 3 16 143 7 123 1.36e-21 89.7
MsG0580030121.01.T02 MTR_6g070880 40.000 125 60 3 20 142 29 140 1.46e-21 88.2
MsG0580030121.01.T02 MTR_6g071420 40.000 125 60 3 20 142 29 140 1.46e-21 88.2
MsG0580030121.01.T02 MTR_0831s0010 45.000 120 58 3 16 134 43 155 2.49e-21 89.4
MsG0580030121.01.T02 MTR_5g074850 43.333 150 50 8 6 148 21 142 2.52e-21 89.7
MsG0580030121.01.T02 MTR_0129s0050 52.525 99 42 2 16 114 9 102 3.73e-21 89.0
MsG0580030121.01.T02 MTR_2g066200 42.453 106 55 2 8 113 1 100 3.89e-21 88.6
MsG0580030121.01.T02 MTR_8g041270 49.533 107 46 4 9 114 4 103 4.88e-21 88.6
MsG0580030121.01.T02 MTR_8g063330 41.129 124 64 3 16 134 7 126 5.02e-21 88.6
MsG0580030121.01.T02 MTR_3g011120 45.545 101 47 2 16 113 7 102 8.26e-21 87.4
MsG0580030121.01.T02 MTR_7g111700 44.186 129 45 6 22 148 14 117 9.78e-21 87.4
MsG0580030121.01.T02 MTR_2g066170 37.121 132 66 4 8 137 1 117 1.01e-20 87.4
MsG0580030121.01.T02 MTR_5g096070 43.548 124 36 4 20 143 23 112 1.07e-20 83.6
MsG0580030121.01.T02 MTR_8g033090 39.855 138 71 4 16 153 7 132 1.27e-20 87.4
MsG0580030121.01.T02 MTR_2g065860 37.931 145 67 5 8 148 1 126 1.84e-20 86.7
MsG0580030121.01.T02 MTR_8g467670 45.455 99 44 2 19 113 10 102 3.55e-20 85.9
MsG0580030121.01.T02 MTR_4g014370 40.411 146 73 5 4 147 5 138 3.78e-20 85.5
MsG0580030121.01.T02 MTR_8g036970 40.769 130 70 3 27 155 2 125 4.15e-20 85.5
MsG0580030121.01.T02 MTR_8g032980 37.241 145 68 5 11 152 4 128 4.61e-20 85.9
MsG0580030121.01.T02 MTR_8g046200 42.754 138 63 6 14 143 6 135 6.98e-20 85.5
MsG0580030121.01.T02 MTR_2g021800 41.892 148 65 6 10 149 5 139 8.00e-20 85.1
MsG0580030121.01.T02 MTR_8g033110 39.844 128 68 2 16 143 7 125 8.04e-20 85.1
MsG0580030121.01.T02 MTR_2g065840 36.957 138 76 3 8 145 1 127 8.06e-20 85.1
MsG0580030121.01.T02 MTR_4g014370 41.096 146 70 6 16 159 6 137 1.00e-19 84.7
MsG0580030121.01.T02 MTR_8g073570 47.423 97 46 3 20 115 7 99 1.10e-19 80.9
MsG0580030121.01.T02 MTR_5g097680 39.869 153 84 4 8 159 6 151 1.26e-19 84.7
MsG0580030121.01.T02 MTR_8g018110 37.500 128 70 2 16 143 7 124 4.81e-19 82.8
MsG0580030121.01.T02 MTR_4g130330 41.085 129 57 5 17 143 1 112 5.26e-19 82.8
MsG0580030121.01.T02 MTR_3g047580 48.052 77 38 2 8 84 1 75 6.92e-19 77.8
MsG0580030121.01.T02 MTR_4g028510 37.857 140 69 5 8 143 1 126 1.20e-18 82.0
MsG0580030121.01.T02 MTR_5g075370 42.336 137 48 7 19 148 4 116 7.97e-18 79.7
MsG0580030121.01.T02 MTR_1g007430 44.167 120 54 6 34 151 7 115 1.15e-17 78.6
MsG0580030121.01.T02 MTR_8g064790 45.283 106 53 2 8 113 1 101 4.93e-17 76.6
MsG0580030121.01.T02 MTR_5g092850 40.984 122 53 4 22 143 15 117 6.16e-17 77.0
MsG0580030121.01.T02 MTR_3g019290 41.176 102 59 1 16 116 7 108 1.50e-16 73.2
MsG0580030121.01.T02 MTR_6g090260 51.389 72 32 1 1 72 1 69 6.86e-16 72.8
MsG0580030121.01.T02 MTR_5g094350 43.103 116 60 3 21 133 11 123 1.32e-15 72.4
MsG0580030121.01.T02 MTR_8g064890 42.308 104 57 1 8 111 1 101 1.05e-14 70.5
MsG0580030121.01.T02 MTR_6g087660 38.462 104 57 3 10 111 8 106 3.59e-14 67.0
MsG0580030121.01.T02 MTR_2g104260 40.268 149 66 7 7 150 1 131 1.69e-13 66.6
MsG0580030121.01.T02 MTR_1g115205 40.367 109 47 3 6 114 12 102 2.82e-13 65.5
MsG0580030121.01.T02 MTR_5g092860 46.053 76 30 2 41 114 20 86 5.41e-13 65.5
MsG0580030121.01.T02 MTR_5g049560 41.237 97 49 3 60 152 1 93 3.38e-12 62.8
MsG0580030121.01.T01 MTR_5g097820 74.302 179 19 2 1 153 1 178 1.16e-88 259
MsG0580030121.01.T01 MTR_5g037680 56.707 164 41 2 18 151 3 166 3.60e-51 169
MsG0580030121.01.T01 MTR_5g059430 49.735 189 55 4 1 149 1 189 2.31e-49 164
MsG0580030121.01.T01 MTR_5g069390 52.174 184 52 5 1 149 1 183 6.73e-49 164
MsG0580030121.01.T01 MTR_5g097650 49.383 162 53 3 7 150 6 156 3.12e-41 135
MsG0580030121.01.T01 MTR_8g012090 47.093 172 54 5 8 152 3 164 3.59e-37 130
MsG0580030121.01.T01 MTR_5g072060 44.521 146 62 3 21 149 4 147 8.37e-36 130
MsG0580030121.01.T01 MTR_5g096900 46.286 175 53 6 11 150 2 170 1.34e-35 125
MsG0580030121.01.T01 MTR_2g038680 46.584 161 62 4 8 148 5 161 6.57e-34 123
MsG0580030121.01.T01 MTR_2g022000 43.452 168 66 5 10 150 5 170 2.57e-33 122
MsG0580030121.01.T01 MTR_7g017130 47.297 148 56 4 16 143 13 158 1.35e-32 119
MsG0580030121.01.T01 MTR_7g017170 47.297 148 56 4 16 143 13 158 1.43e-32 119
MsG0580030121.01.T01 MTR_8g063440 42.675 157 69 4 8 148 1 152 2.77e-32 118
MsG0580030121.01.T01 MTR_8g013000 43.871 155 65 5 16 150 5 157 6.71e-32 117
MsG0580030121.01.T01 MTR_4g055820 46.000 150 63 4 16 149 9 156 2.39e-31 115
MsG0580030121.01.T01 MTR_4g102410 42.683 164 69 5 7 149 49 208 3.18e-31 116
MsG0580030121.01.T01 MTR_7g079640 41.611 149 67 2 16 147 9 154 4.30e-31 115
MsG0580030121.01.T01 MTR_1g076810 42.069 145 62 4 18 141 13 156 5.93e-31 117
MsG0580030121.01.T01 MTR_5g097220 42.484 153 64 3 13 147 3 149 9.24e-31 114
MsG0580030121.01.T01 MTR_5g096630 42.593 162 68 4 7 147 6 163 1.04e-30 114
MsG0580030121.01.T01 MTR_8g033140 39.655 174 77 3 10 155 6 179 1.21e-30 114
MsG0580030121.01.T01 MTR_2g021770 44.586 157 62 4 14 147 5 159 2.34e-30 113
MsG0580030121.01.T01 MTR_7g069550 42.331 163 71 6 7 149 1 160 2.42e-30 113
MsG0580030121.01.T01 MTR_1g007410 45.205 146 62 2 22 149 21 166 3.92e-30 112
MsG0580030121.01.T01 MTR_0129s0070 42.405 158 72 3 7 147 1 156 4.67e-30 112
MsG0580030121.01.T01 MTR_5g097350 45.139 144 53 3 32 149 25 168 7.21e-30 112
MsG0580030121.01.T01 MTR_4g117550 44.872 156 64 4 10 147 8 159 1.13e-29 111
MsG0580030121.01.T01 MTR_5g097330 41.899 179 65 8 5 152 2 172 1.85e-29 111
MsG0580030121.01.T01 MTR_2g021950 40.000 150 70 2 21 150 14 163 1.94e-29 110
MsG0580030121.01.T01 MTR_7g017040 42.073 164 68 4 7 150 4 160 5.19e-29 110
MsG0580030121.01.T01 MTR_0129s0050 43.226 155 57 5 16 149 9 153 7.78e-29 109
MsG0580030121.01.T01 MTR_5g037190 43.226 155 66 3 16 150 11 163 8.85e-29 106
MsG0580030121.01.T01 MTR_0831s0010 43.791 153 73 5 16 155 43 195 1.65e-28 108
MsG0580030121.01.T01 MTR_1g098180 42.222 135 75 2 10 143 5 137 3.81e-28 107
MsG0580030121.01.T01 MTR_6g465360 42.208 154 62 5 10 143 53 199 1.62e-27 103
MsG0580030121.01.T01 MTR_6g090180 40.625 160 69 5 10 148 38 192 2.29e-27 105
MsG0580030121.01.T01 MTR_6g086825 38.710 155 78 2 10 147 57 211 2.31e-27 106
MsG0580030121.01.T01 MTR_2g021800 41.420 169 69 5 10 150 5 171 2.31e-27 105
MsG0580030121.01.T01 MTR_0129s0120 41.772 158 73 3 7 147 1 156 4.49e-27 104
MsG0580030121.01.T01 MTR_5g024260 39.375 160 70 3 8 143 7 163 4.78e-27 104
MsG0580030121.01.T01 MTR_7g016930 46.099 141 63 5 16 150 11 144 1.02e-26 102
MsG0580030121.01.T01 MTR_0054s0090 42.675 157 61 5 10 146 8 155 4.86e-26 102
MsG0580030121.01.T01 MTR_2g104340 42.857 161 58 8 9 149 3 149 6.50e-26 101
MsG0580030121.01.T01 MTR_0134s0060 41.772 158 65 5 10 147 3 153 8.12e-26 101
MsG0580030121.01.T01 MTR_8g046310 37.572 173 81 5 8 155 1 171 9.54e-26 100
MsG0580030121.01.T01 MTR_1g053510 38.372 172 76 5 10 154 5 173 1.56e-25 100
MsG0580030121.01.T01 MTR_2g064950 44.138 145 67 7 16 150 5 145 2.71e-25 99.8
MsG0580030121.01.T01 MTR_8g464770 38.272 162 70 3 16 154 7 161 4.18e-25 99.0
MsG0580030121.01.T01 MTR_2g034700 38.286 175 73 6 11 155 5 174 1.17e-24 97.8
MsG0580030121.01.T01 MTR_5g074850 42.767 159 54 7 7 143 22 165 1.21e-24 99.4
MsG0580030121.01.T01 MTR_8g041440 60.563 71 28 0 15 85 7 77 1.47e-24 92.0
MsG0580030121.01.T01 MTR_6g070880 38.255 149 66 4 21 147 30 174 1.50e-24 95.9
MsG0580030121.01.T01 MTR_6g071420 38.255 149 66 4 21 147 30 174 1.50e-24 95.9
MsG0580030121.01.T01 MTR_0054s0100 42.138 159 61 7 10 146 8 157 1.54e-24 97.8
MsG0580030121.01.T01 MTR_6g461660 39.264 163 63 4 10 144 10 164 2.29e-24 97.4
MsG0580030121.01.T01 MTR_6g079770 44.371 151 53 7 14 141 10 152 2.85e-24 97.4
MsG0580030121.01.T01 MTR_8g032980 35.955 178 75 5 8 155 1 169 4.34e-24 96.7
MsG0580030121.01.T01 MTR_2g104280 39.490 157 68 5 14 149 7 157 5.88e-24 96.3
MsG0580030121.01.T01 MTR_5g096910 40.719 167 66 5 7 143 2 165 7.58e-24 95.9
MsG0580030121.01.T01 MTR_6g080680 40.244 164 69 6 1 143 1 156 9.72e-24 95.5
MsG0580030121.01.T01 MTR_2g066150 38.000 150 65 5 11 143 4 142 1.01e-23 95.1
MsG0580030121.01.T01 MTR_4g028680 39.355 155 69 5 8 141 1 151 1.32e-23 95.5
MsG0580030121.01.T01 MTR_8g046220 38.788 165 79 4 10 155 4 165 2.30e-23 94.7
MsG0580030121.01.T01 MTR_8g039500 37.255 153 65 4 8 141 1 141 2.52e-23 94.0
MsG0580030121.01.T01 MTR_2g066200 34.839 155 74 4 8 141 1 149 2.61e-23 94.4
MsG0580030121.01.T01 MTR_5g096070 42.336 137 65 4 20 153 23 148 2.81e-23 90.1
MsG0580030121.01.T01 MTR_1g007450 42.568 148 61 6 11 140 4 145 4.04e-23 94.4
MsG0580030121.01.T01 MTR_6g478230 41.060 151 70 5 15 147 18 167 4.43e-23 94.0
MsG0580030121.01.T01 MTR_8g041270 41.104 163 67 7 9 149 4 159 7.54e-23 93.2
MsG0580030121.01.T01 MTR_8g018110 34.940 166 81 4 16 155 7 171 8.37e-23 93.2
MsG0580030121.01.T01 MTR_6g079810 40.764 157 67 6 13 147 56 208 1.18e-22 93.2
MsG0580030121.01.T01 MTR_3g011120 36.842 152 66 4 16 143 7 152 1.33e-22 92.4
MsG0580030121.01.T01 MTR_8g036970 38.571 140 65 2 27 145 2 141 1.69e-22 92.0
MsG0580030121.01.T01 MTR_4g028510 36.646 161 75 6 8 146 1 156 2.29e-22 92.4
MsG0580030121.01.T01 MTR_7g104710 39.394 165 66 7 1 143 1 153 2.49e-22 90.9
MsG0580030121.01.T01 MTR_8g467670 36.943 157 67 5 12 143 4 153 2.83e-22 91.7
MsG0580030121.01.T01 MTR_8g033090 35.329 167 80 5 16 155 7 172 4.69e-22 91.3
MsG0580030121.01.T01 MTR_5g097680 36.464 181 73 7 8 151 6 181 7.11e-22 90.9
MsG0580030121.01.T01 MTR_4g028750 39.103 156 66 6 13 143 2 153 8.19e-22 90.5
MsG0580030121.01.T01 MTR_8g033110 35.329 167 80 5 16 155 7 172 1.26e-21 90.1
MsG0580030121.01.T01 MTR_5g075370 40.136 147 55 5 19 143 4 139 1.34e-21 90.5
MsG0580030121.01.T01 MTR_5g094350 42.520 127 69 2 21 143 11 137 1.44e-21 88.2
MsG0580030121.01.T01 MTR_1g050308 36.667 150 70 4 11 141 26 169 2.04e-21 89.0
MsG0580030121.01.T01 MTR_5g091140 45.794 107 53 2 5 110 34 136 3.31e-21 89.0
MsG0580030121.01.T01 MTR_3g019290 38.235 136 64 2 16 150 7 123 3.67e-21 85.1
MsG0580030121.01.T01 MTR_5g092850 40.426 141 64 4 17 143 10 144 4.56e-21 88.2
MsG0580030121.01.T01 MTR_4g014370 37.654 162 68 4 16 146 6 165 6.59e-21 87.8
MsG0580030121.01.T01 MTR_4g130330 36.486 148 66 5 17 144 1 140 1.40e-20 87.0
MsG0580030121.01.T01 MTR_8g073570 40.000 140 62 6 20 141 7 142 3.13e-20 82.4
MsG0580030121.01.T01 MTR_8g046200 36.872 179 70 6 14 155 6 178 3.17e-20 86.3
MsG0580030121.01.T01 MTR_3g047580 37.778 135 68 6 11 140 4 127 3.41e-20 81.3
MsG0580030121.01.T01 MTR_4g028660 34.416 154 77 5 8 141 1 150 4.20e-20 85.5
MsG0580030121.01.T01 MTR_4g027450 34.416 154 77 5 8 141 1 150 4.20e-20 85.5
MsG0580030121.01.T01 MTR_2g065860 34.395 157 73 4 8 141 1 150 2.23e-19 83.6
MsG0580030121.01.T01 MTR_2g066170 32.680 153 78 4 8 141 1 147 5.98e-19 82.4
MsG0580030121.01.T01 MTR_8g064790 37.975 158 74 5 11 149 4 156 6.89e-19 81.6
MsG0580030121.01.T01 MTR_8g064890 36.129 155 73 4 11 143 4 154 3.21e-18 80.5
MsG0580030121.01.T01 MTR_7g111700 35.802 162 58 5 22 152 14 160 4.81e-18 79.7
MsG0580030121.01.T01 MTR_8g063330 32.680 153 84 4 16 149 7 159 5.47e-17 77.0
MsG0580030121.01.T01 MTR_2g065840 31.210 157 77 4 8 140 1 150 2.19e-16 75.1
MsG0580030121.01.T01 MTR_6g090260 51.389 72 32 1 1 72 1 69 1.17e-15 72.0
MsG0580030121.01.T01 MTR_4g014370 42.202 109 59 2 4 110 5 111 2.27e-15 72.0
MsG0580030121.01.T01 MTR_2g104260 38.415 164 73 6 7 149 1 157 3.05e-15 71.2
MsG0580030121.01.T01 MTR_1g007430 38.462 130 58 5 34 144 7 133 4.45e-15 71.2
MsG0580030121.01.T01 MTR_8g063370 36.842 133 60 4 27 141 28 154 2.04e-14 69.7
MsG0580030121.01.T01 MTR_6g087660 38.235 102 56 3 10 109 8 104 2.12e-13 65.1
MsG0580030121.01.T01 MTR_5g092860 37.719 114 51 4 41 147 20 120 8.97e-13 64.7
MsG0580030121.01.T01 MTR_1g009110 33.553 152 66 6 19 144 10 152 3.87e-12 63.2
MsG0580030121.01.T01 MTR_5g049560 35.246 122 48 3 60 150 1 122 4.07e-12 62.4
MsG0580030121.01.T01 MTR_1g115205 40.000 105 45 3 6 110 12 98 6.92e-12 61.6
MsG0580030121.01.T01 MTR_8g063310 31.690 142 73 4 18 141 17 152 5.82e-11 59.7
MsG0580030121.01.T01 MTR_5g074800 33.333 105 51 3 62 149 1 103 6.71e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 34 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGATTTAATAGGCAATT+TGG 0.192938 5:+106996491 None:intergenic
AGGTGAGAGGTTTGAGAATA+GGG 0.220584 5:-106996289 MsG0580030121.01.T01:CDS
AGAAAAGATCATTAGGTATA+TGG 0.230743 5:+106996526 None:intergenic
AATCGCTTCAAAGATTTAAT+AGG 0.258645 5:+106996483 None:intergenic
CATAAAGAAGAGTATGATTC+TGG 0.287265 5:-106996222 MsG0580030121.01.T01:intron
CGATTCTGAACCTTATTGTT+GGG 0.309679 5:-106996078 MsG0580030121.01.T01:CDS
AACTTAAATTCCTTAGTAGA+TGG 0.323500 5:+106996119 None:intergenic
CAATCAAAACCCCAACAATA+AGG 0.346232 5:+106996068 None:intergenic
TCTTCTTTATGCAGATATAT+CGG 0.358814 5:+106996234 None:intergenic
ACAGATGTATCGTCATAATA+AGG 0.362168 5:+106996372 None:intergenic
GAATTGTGCGCATGTGATTA+AGG 0.392457 5:-106996583 MsG0580030121.01.T01:CDS
TAGGTGAGAGGTTTGAGAAT+AGG 0.397895 5:-106996290 MsG0580030121.01.T01:CDS
AGAATAGGGTCAAATTAGAT+TGG 0.403570 5:-106996275 MsG0580030121.01.T01:intron
ATAAAGAAGAAAAGATCATT+AGG 0.406251 5:+106996519 None:intergenic
ATTGGTTCTGGCAGTGTTCA+AGG 0.413517 5:-106996189 MsG0580030121.01.T01:intron
TCGATTCTGAACCTTATTGT+TGG 0.416908 5:-106996079 MsG0580030121.01.T01:CDS
GATCATTAGGTATATGGGAT+TGG 0.424342 5:+106996532 None:intergenic
GAAAAGATCATTAGGTATAT+GGG 0.429247 5:+106996527 None:intergenic
AATAAAGATTATCAAACAAA+AGG 0.441080 5:+106996436 None:intergenic
CACCTAAAAGAGTTTGCAAC+TGG 0.472597 5:+106996307 None:intergenic
AGGTTCAGAATCGAAAGGAC+TGG 0.520097 5:+106996088 None:intergenic
ATAAAGATTATCAAACAAAA+GGG 0.521653 5:+106996437 None:intergenic
GATTCTGAACCTTATTGTTG+GGG 0.525400 5:-106996077 MsG0580030121.01.T01:CDS
TTGCATGTGTACGCAAATCA+TGG 0.526545 5:-106996461 MsG0580030121.01.T01:CDS
ATTGTGGAATCCATCTACTA+AGG 0.530810 5:-106996129 MsG0580030121.01.T01:CDS
GGCTACAAACGAGAAGGTAA+AGG 0.542078 5:-106996562 MsG0580030121.01.T01:CDS
AAAAGAGTTTGCAACTGGCA+TGG 0.563243 5:+106996312 None:intergenic
GGTTCAGAATCGAAAGGACT+GGG 0.581650 5:+106996089 None:intergenic
CTCAAGAAAATATTATATTG+TGG 0.583417 5:-106996145 MsG0580030121.01.T01:CDS
ATCGGATCTAACTTGACACT+TGG 0.583691 5:+106996252 None:intergenic
GATTAAGGCTACAAACGAGA+AGG 0.629637 5:-106996568 MsG0580030121.01.T01:CDS
CAATAAGGTTCAGAATCGAA+AGG 0.665842 5:+106996083 None:intergenic
TCTTTGTTAAGAAAGAGTTG+CGG 0.704600 5:+106996400 None:intergenic
TCAGAATCGAAAGGACTGGG+AGG 0.731992 5:+106996092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGATTATCAAACAAA+AGG + Chr5:106996222-106996241 None:intergenic 15.0%
!! ATAAAGATTATCAAACAAAA+GGG + Chr5:106996221-106996240 None:intergenic 15.0%
!! ATAAAGAAGAAAAGATCATT+AGG + Chr5:106996139-106996158 None:intergenic 20.0%
!! CTCAAGAAAATATTATATTG+TGG - Chr5:106996510-106996529 MsG0580030121.01.T01:CDS 20.0%
!!! GATTCTGGTTTTAATATTAT+TGG - Chr5:106996448-106996467 MsG0580030121.01.T01:CDS 20.0%
! AACTTAAATTCCTTAGTAGA+TGG + Chr5:106996539-106996558 None:intergenic 25.0%
! AATCGCTTCAAAGATTTAAT+AGG + Chr5:106996175-106996194 None:intergenic 25.0%
! AGAAAAGATCATTAGGTATA+TGG + Chr5:106996132-106996151 None:intergenic 25.0%
! CAAAGATTTAATAGGCAATT+TGG + Chr5:106996167-106996186 None:intergenic 25.0%
! GAAAAGATCATTAGGTATAT+GGG + Chr5:106996131-106996150 None:intergenic 25.0%
! TCTTCTTTATGCAGATATAT+CGG + Chr5:106996424-106996443 None:intergenic 25.0%
!!! GGTTTTAATATTATTGGTTC+TGG - Chr5:106996454-106996473 MsG0580030121.01.T01:CDS 25.0%
ACAGATGTATCGTCATAATA+AGG + Chr5:106996286-106996305 None:intergenic 30.0%
AGAATAGGGTCAAATTAGAT+TGG - Chr5:106996380-106996399 MsG0580030121.01.T01:CDS 30.0%
TCTTTGTTAAGAAAGAGTTG+CGG + Chr5:106996258-106996277 None:intergenic 30.0%
! CATAAAGAAGAGTATGATTC+TGG - Chr5:106996433-106996452 MsG0580030121.01.T01:CDS 30.0%
ATTGTGGAATCCATCTACTA+AGG - Chr5:106996526-106996545 MsG0580030121.01.T01:CDS 35.0%
CAATAAGGTTCAGAATCGAA+AGG + Chr5:106996575-106996594 None:intergenic 35.0%
CAATCAAAACCCCAACAATA+AGG + Chr5:106996590-106996609 None:intergenic 35.0%
CGATTCTGAACCTTATTGTT+GGG - Chr5:106996577-106996596 MsG0580030121.01.T01:CDS 35.0%
GATCATTAGGTATATGGGAT+TGG + Chr5:106996126-106996145 None:intergenic 35.0%
GATTCTGAACCTTATTGTTG+GGG - Chr5:106996578-106996597 MsG0580030121.01.T01:CDS 35.0%
TCGATTCTGAACCTTATTGT+TGG - Chr5:106996576-106996595 MsG0580030121.01.T01:CDS 35.0%
AAAAGAGTTTGCAACTGGCA+TGG + Chr5:106996346-106996365 None:intergenic 40.0%
AGGTGAGAGGTTTGAGAATA+GGG - Chr5:106996366-106996385 MsG0580030121.01.T01:CDS 40.0%
ATCGGATCTAACTTGACACT+TGG + Chr5:106996406-106996425 None:intergenic 40.0%
CACCTAAAAGAGTTTGCAAC+TGG + Chr5:106996351-106996370 None:intergenic 40.0%
GAATTGTGCGCATGTGATTA+AGG - Chr5:106996072-106996091 MsG0580030121.01.T01:CDS 40.0%
GATTAAGGCTACAAACGAGA+AGG - Chr5:106996087-106996106 MsG0580030121.01.T01:CDS 40.0%
TAGGTGAGAGGTTTGAGAAT+AGG - Chr5:106996365-106996384 MsG0580030121.01.T01:CDS 40.0%
TTGCATGTGTACGCAAATCA+TGG - Chr5:106996194-106996213 MsG0580030121.01.T01:intron 40.0%
! TGCCAGTTGCAAACTCTTTT+AGG - Chr5:106996346-106996365 MsG0580030121.01.T01:CDS 40.0%
!! TGCAAACTCTTTTAGGTGAG+AGG - Chr5:106996353-106996372 MsG0580030121.01.T01:CDS 40.0%
AGGTTCAGAATCGAAAGGAC+TGG + Chr5:106996570-106996589 None:intergenic 45.0%
GGCTACAAACGAGAAGGTAA+AGG - Chr5:106996093-106996112 MsG0580030121.01.T01:CDS 45.0%
GGTTCAGAATCGAAAGGACT+GGG + Chr5:106996569-106996588 None:intergenic 45.0%
!! ATTGGTTCTGGCAGTGTTCA+AGG - Chr5:106996466-106996485 MsG0580030121.01.T01:CDS 45.0%
TCAGAATCGAAAGGACTGGG+AGG + Chr5:106996566-106996585 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
Chr5 gene 106996067 106996610 106996067 ID=MsG0580030121.01;Name=MsG0580030121.01
Chr5 mRNA 106996067 106996610 106996067 ID=MsG0580030121.01.T01;Parent=MsG0580030121.01;Name=MsG0580030121.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0|0|2|0|155
Chr5 exon 106996067 106996207 106996067 ID=MsG0580030121.01.T01:exon:14768;Parent=MsG0580030121.01.T01
Chr5 exon 106996284 106996610 106996284 ID=MsG0580030121.01.T01:exon:14767;Parent=MsG0580030121.01.T01
Chr5 CDS 106996284 106996610 106996284 ID=MsG0580030121.01.T01:cds;Parent=MsG0580030121.01.T01
Chr5 CDS 106996067 106996207 106996067 ID=MsG0580030121.01.T01:cds;Parent=MsG0580030121.01.T01
Chr5 mRNA 106996131 106996610 106996131 ID=MsG0580030121.01.T02;Parent=MsG0580030121.01;Name=MsG0580030121.01.T02;_AED=0.30;_eAED=0.31;_QI=0|-1|0|1|-1|0|1|0|159
Chr5 exon 106996131 106996610 106996131 ID=MsG0580030121.01.T02:exon:14769;Parent=MsG0580030121.01.T02
Chr5 CDS 106996131 106996610 106996131 ID=MsG0580030121.01.T02:cds;Parent=MsG0580030121.01.T02
Gene Sequence

>MsG0580030121.01.T02

ATGAAGAATTGTGCGCATGTGATTAAGGCTACAAACGAGAAGGTAAAGGTAAGAAACCAATCCCATATACCTAATGATCTTTTCTTCTTTATTCTCTCCAAATTGCCTATTAAATCTTTGAAGCGATTTGCATGTGTACGCAAATCATGGTCCCTTTTGTTTGATAATCTTTATTTCATGACTATGTACCGCAACTCTTTCTTAACAAAGAATCATCCTTATTATGACGATACATCTGTTCTCTTACATCAAACTTTTCATACTTATTTACAAGAACCATGCCAGTTGCAAACTCTTTTAGGTGAGAGGTTTGAGAATAGGGTCAAATTAGATTGGCCAAGTGTCAAGTTAGATCCGATATATCTGCATAAAGAAGAGTATGATTCTGGTTTTAATATTATTGGTTCTGGCAGTGTTCAAGGAACTATTTTTGTTATGTGCATCTCAAGAAAATATTATATTGTGGAATCCATCTACTAA

>MsG0580030121.01.T01

ATGAAGAATTGTGCGCATGTGATTAAGGCTACAAACGAGAAGGTAAAGGTAAGAAACCAATCCCATATACCTAATGATCTTTTCTTCTTTATTCTCTCCAAATTGCCTATTAAATCTTTGAAGCGATTTGCATGTGTACGCAAATCATGGTCCCTTTTGTTTGATAATCTTTATTTCATGACTATGTACCGCAACTCTTTCTTAACAAAGAATCATCCTTATTATGACGATACATCTGTTCTCTTACATCAAACTTTTCATACTTATTTACAAGAACCATGCCAGTTGCAAACTCTTTTAGGTGAGAGGTTTGAGAATAGGGTCAAAGTTCTGGCAGTGTTCAAGGAACTATTTTTGTTATGTGCATCTCAAGAAAATATTATATTGTGGAATCCATCTACTAAGGAATTTAAGTTGATTCCTCCCAGTCCTTTCGATTCTGAACCTTATTGTTGGGGTTTTGATTGA
Protein sequence

>MsG0580030121.01.T02

MKNCAHVIKATNEKVKVRNQSHIPNDLFFFILSKLPIKSLKRFACVRKSWSLLFDNLYFMTMYRNSFLTKNHPYYDDTSVLLHQTFHTYLQEPCQLQTLLGERFENRVKLDWPSVKLDPIYLHKEEYDSGFNIIGSGSVQGTIFVMCISRKYYIVESIY*

>MsG0580030121.01.T01

MKNCAHVIKATNEKVKVRNQSHIPNDLFFFILSKLPIKSLKRFACVRKSWSLLFDNLYFMTMYRNSFLTKNHPYYDDTSVLLHQTFHTYLQEPCQLQTLLGERFENRVKVLAVFKELFLLCASQENIILWNPSTKEFKLIPPSPFDSEPYCWGFD*