AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043036.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043036.01.T01 MTR_4g117550 57.414 263 56 4 12 255 85 310 2.89e-93 280
MsG0880043036.01.T01 MTR_0129s0070 55.094 265 85 4 12 255 82 333 1.36e-88 269
MsG0880043036.01.T01 MTR_0129s0120 54.167 264 87 4 13 255 83 333 2.52e-86 263
MsG0880043036.01.T01 MTR_0129s0050 46.931 277 94 7 16 253 82 344 7.12e-62 201
MsG0880043036.01.T01 MTR_1g007430 41.758 273 148 4 10 277 59 325 1.07e-59 192
MsG0880043036.01.T01 MTR_4g102410 40.000 280 123 9 11 261 129 392 3.83e-52 176
MsG0880043036.01.T01 MTR_8g063440 42.276 246 131 5 15 255 81 320 2.38e-51 173
MsG0880043036.01.T01 MTR_4g055820 40.659 273 124 7 18 263 87 348 1.30e-50 170
MsG0880043036.01.T01 MTR_5g096630 41.985 262 127 8 14 256 88 343 2.58e-50 171
MsG0880043036.01.T01 MTR_1g007450 42.460 252 130 6 18 255 83 333 9.92e-49 167
MsG0880043036.01.T01 MTR_5g097330 42.586 263 115 12 17 255 89 339 1.03e-48 166
MsG0880043036.01.T01 MTR_2g021800 44.444 261 110 11 18 250 97 350 1.41e-48 166
MsG0880043036.01.T01 MTR_7g069550 39.394 264 142 7 4 255 80 337 1.54e-48 166
MsG0880043036.01.T01 MTR_7g016930 44.030 268 125 10 26 279 78 334 1.85e-48 164
MsG0880043036.01.T01 MTR_5g097350 40.226 266 110 8 6 250 84 321 2.76e-48 165
MsG0880043036.01.T01 MTR_2g022000 42.481 266 118 10 18 255 96 354 8.52e-46 159
MsG0880043036.01.T01 MTR_2g104340 40.977 266 118 8 18 255 80 334 9.75e-46 158
MsG0880043036.01.T01 MTR_7g017170 41.353 266 128 9 5 255 82 334 1.00e-45 159
MsG0880043036.01.T01 MTR_7g017130 41.353 266 128 9 5 255 82 334 1.19e-45 158
MsG0880043036.01.T01 MTR_2g038680 37.333 300 113 10 15 269 88 357 2.18e-45 158
MsG0880043036.01.T01 MTR_3g011120 42.000 250 127 8 13 255 79 317 5.90e-45 155
MsG0880043036.01.T01 MTR_1g050312 39.394 264 116 10 1 255 1 229 2.75e-44 152
MsG0880043036.01.T01 MTR_2g021770 38.662 269 124 7 15 254 87 343 5.08e-44 154
MsG0880043036.01.T01 MTR_8g012090 39.338 272 89 8 14 255 77 302 1.02e-43 152
MsG0880043036.01.T01 MTR_5g037680 40.226 266 100 9 18 255 85 319 1.04e-43 154
MsG0880043036.01.T01 MTR_5g074800 38.931 262 146 8 7 255 22 282 1.35e-43 151
MsG0880043036.01.T01 MTR_8g467670 38.806 268 116 10 7 253 74 314 1.54e-43 152
MsG0880043036.01.T01 MTR_2g104280 38.745 271 121 9 19 255 84 343 1.87e-43 152
MsG0880043036.01.T01 MTR_6g086825 42.586 263 122 11 16 255 141 397 3.17e-43 153
MsG0880043036.01.T01 MTR_4g014370 35.740 277 123 7 18 255 86 346 2.02e-42 150
MsG0880043036.01.T01 MTR_4g007940 36.882 263 130 8 18 255 28 279 2.06e-42 148
MsG0880043036.01.T01 MTR_1g007410 40.210 286 114 13 15 269 93 352 2.83e-42 149
MsG0880043036.01.T01 MTR_7g017040 40.000 260 126 8 17 255 85 335 5.62e-42 149
MsG0880043036.01.T01 MTR_6g461660 39.113 248 134 7 18 250 88 333 6.93e-41 145
MsG0880043036.01.T01 MTR_8g464770 38.224 259 117 8 17 256 84 318 7.41e-41 145
MsG0880043036.01.T01 MTR_8g041270 39.051 274 123 8 15 255 82 344 8.61e-41 145
MsG0880043036.01.T01 MTR_5g072060 40.310 258 127 7 9 255 68 309 1.20e-40 149
MsG0880043036.01.T01 MTR_8g013000 38.697 261 126 6 18 256 84 332 3.76e-40 144
MsG0880043036.01.T01 MTR_5g096910 38.431 255 125 9 18 255 89 328 8.76e-40 142
MsG0880043036.01.T01 MTR_6g080680 40.304 263 119 9 14 255 87 332 2.40e-39 142
MsG0880043036.01.T01 MTR_7g079640 38.800 250 119 9 17 255 85 311 2.53e-39 141
MsG0880043036.01.T01 MTR_6g079810 39.223 283 114 13 14 255 135 400 3.86e-39 142
MsG0880043036.01.T01 MTR_0054s0090 38.686 274 115 10 17 255 88 343 1.20e-38 140
MsG0880043036.01.T01 MTR_5g091140 36.194 268 94 9 18 250 122 347 3.53e-38 139
MsG0880043036.01.T01 MTR_2g021950 39.764 254 131 9 18 255 89 336 3.77e-38 138
MsG0880043036.01.T01 MTR_2g034700 38.735 253 114 11 18 255 85 311 1.27e-37 136
MsG0880043036.01.T01 MTR_8g064890 38.697 261 126 9 18 260 86 330 1.36e-37 137
MsG0880043036.01.T01 MTR_5g059430 36.226 265 139 10 18 259 109 366 2.27e-37 137
MsG0880043036.01.T01 MTR_5g022850 37.050 278 141 10 1 256 25 290 2.58e-37 135
MsG0880043036.01.T01 MTR_2g066150 37.500 248 116 8 18 255 78 296 3.22e-37 135
MsG0880043036.01.T01 MTR_2g066170 39.357 249 130 10 14 250 79 318 5.76e-37 135
MsG0880043036.01.T01 MTR_4g130330 37.828 267 124 9 18 255 74 327 6.30e-37 135
MsG0880043036.01.T01 MTR_8g033110 37.241 290 123 13 8 254 78 351 1.36e-36 135
MsG0880043036.01.T01 MTR_0054s0100 37.818 275 118 10 17 255 88 345 1.67e-36 134
MsG0880043036.01.T01 MTR_0831s0010 36.885 244 139 6 18 255 124 358 1.92e-36 134
MsG0880043036.01.T01 MTR_6g090180 40.000 260 129 9 14 250 115 370 2.78e-36 134
MsG0880043036.01.T01 MTR_8g039500 37.600 250 132 10 18 255 77 314 6.10e-36 131
MsG0880043036.01.T01 MTR_2g065860 36.154 260 128 9 18 255 82 325 9.01e-36 132
MsG0880043036.01.T01 MTR_5g068490 36.626 243 106 8 27 255 8 216 1.04e-35 129
MsG0880043036.01.T01 MTR_6g078010 40.000 260 113 11 17 255 35 272 1.77e-35 130
MsG0880043036.01.T01 MTR_6g079770 37.722 281 117 12 18 255 89 354 1.84e-35 132
MsG0880043036.01.T01 MTR_6g090250 39.223 283 126 12 17 255 81 361 2.29e-35 131
MsG0880043036.01.T01 MTR_1g053510 35.849 265 146 9 12 255 82 343 4.30e-35 130
MsG0880043036.01.T01 MTR_5g097220 35.172 290 122 11 18 261 80 349 4.39e-35 130
MsG0880043036.01.T01 MTR_0134s0060 37.545 277 123 13 18 255 84 349 5.08e-35 130
MsG0880043036.01.T01 MTR_8g033140 35.612 278 138 8 11 255 85 354 5.57e-35 130
MsG0880043036.01.T01 MTR_4g028660 37.358 265 126 11 17 255 86 336 8.81e-35 129
MsG0880043036.01.T01 MTR_4g027450 37.358 265 126 11 17 255 86 336 8.81e-35 129
MsG0880043036.01.T01 MTR_7g111700 40.711 253 103 13 17 250 74 298 1.23e-34 128
MsG0880043036.01.T01 MTR_4g028510 38.519 270 124 14 14 255 84 339 2.11e-34 129
MsG0880043036.01.T01 MTR_8g033090 35.517 290 126 11 8 254 78 349 2.73e-34 128
MsG0880043036.01.T01 MTR_5g069390 35.165 273 128 9 18 259 104 358 6.16e-34 129
MsG0880043036.01.T01 MTR_2g064950 38.281 256 129 8 18 255 82 326 1.85e-33 126
MsG0880043036.01.T01 MTR_5g086590 42.564 195 97 6 65 255 13 196 1.99e-33 122
MsG0880043036.01.T01 MTR_2g065840 37.402 254 132 10 18 255 82 324 2.89e-33 125
MsG0880043036.01.T01 MTR_8g046200 32.450 302 116 12 18 256 83 359 1.41e-32 124
MsG0880043036.01.T01 MTR_4g016000 38.725 204 103 8 70 269 2 187 1.64e-32 119
MsG0880043036.01.T01 MTR_8g046310 38.132 257 113 14 18 256 87 315 2.02e-32 123
MsG0880043036.01.T01 MTR_4g028750 35.821 268 115 10 17 250 86 330 8.97e-32 121
MsG0880043036.01.T01 MTR_2g066200 36.502 263 130 12 14 255 79 325 1.63e-31 120
MsG0880043036.01.T01 MTR_8g063330 32.308 260 136 8 18 255 89 330 2.16e-31 121
MsG0880043036.01.T01 MTR_5g096900 38.846 260 97 11 17 241 81 313 3.08e-31 118
MsG0880043036.01.T01 MTR_5g043605 35.088 285 133 12 24 278 50 312 4.11e-31 119
MsG0880043036.01.T01 MTR_8g046220 34.050 279 133 9 12 256 82 343 5.13e-31 119
MsG0880043036.01.T01 MTR_5g064700 33.214 280 141 8 17 255 34 308 9.92e-31 118
MsG0880043036.01.T01 MTR_4g028680 37.405 262 131 9 17 255 86 337 1.04e-30 119
MsG0880043036.01.T01 MTR_5g076490 35.507 276 109 10 17 255 30 273 1.23e-30 117
MsG0880043036.01.T01 MTR_1g050308 34.016 244 94 7 18 255 105 287 3.37e-30 116
MsG0880043036.01.T01 MTR_5g098950 40.000 190 87 5 67 255 90 253 3.55e-30 114
MsG0880043036.01.T01 MTR_5g097680 35.789 285 133 14 16 255 88 367 4.00e-30 117
MsG0880043036.01.T01 MTR_8g036970 34.351 262 78 9 17 255 70 260 7.90e-30 115
MsG0880043036.01.T01 MTR_6g070880 41.463 164 79 6 14 162 99 260 8.13e-30 113
MsG0880043036.01.T01 MTR_6g071420 41.463 164 79 6 14 162 99 260 8.13e-30 113
MsG0880043036.01.T01 MTR_5g074850 35.793 271 127 14 13 250 99 355 9.80e-30 118
MsG0880043036.01.T01 MTR_2g104260 43.038 158 74 5 15 159 80 234 2.40e-29 112
MsG0880043036.01.T01 MTR_6g079790 35.688 269 106 10 30 255 2 246 3.08e-29 113
MsG0880043036.01.T01 MTR_5g075370 34.799 273 130 14 13 250 72 331 6.24e-29 116
MsG0880043036.01.T01 MTR_6g087620 32.593 270 105 8 18 255 1 225 2.46e-28 110
MsG0880043036.01.T01 MTR_6g478230 33.818 275 120 8 16 255 97 344 2.86e-28 112
MsG0880043036.01.T01 MTR_5g092860 34.328 268 127 10 18 257 68 314 3.34e-28 111
MsG0880043036.01.T01 MTR_6g004450 38.500 200 77 7 74 250 25 201 8.17e-28 108
MsG0880043036.01.T01 MTR_8g032980 30.208 288 150 11 14 255 76 358 1.22e-27 110
MsG0880043036.01.T01 MTR_5g024260 34.432 273 122 11 18 255 92 342 1.31e-27 110
MsG0880043036.01.T01 MTR_8g073570 52.632 95 44 1 15 109 77 170 3.86e-27 103
MsG0880043036.01.T01 MTR_5g092850 34.733 262 129 11 18 250 83 331 1.70e-26 107
MsG0880043036.01.T01 MTR_8g063310 30.385 260 143 9 18 255 89 332 3.90e-25 103
MsG0880043036.01.T01 MTR_8g063370 30.864 243 150 7 14 248 87 319 8.65e-25 102
MsG0880043036.01.T01 MTR_1g076810 45.963 161 65 10 17 168 89 236 9.68e-25 103
MsG0880043036.01.T01 MTR_8g064790 32.645 242 110 8 17 255 83 274 9.74e-25 101
MsG0880043036.01.T01 MTR_8g018110 32.593 270 147 10 8 255 78 334 1.79e-24 101
MsG0880043036.01.T01 MTR_8g063350 31.679 262 136 11 18 255 45 287 2.05e-24 100
MsG0880043036.01.T01 MTR_2g021920 42.045 176 84 7 98 255 37 212 1.04e-23 97.4
MsG0880043036.01.T01 MTR_8g033000 29.225 284 152 10 14 255 24 300 3.96e-22 94.7
MsG0880043036.01.T01 MTR_5g037190 43.571 140 73 5 10 145 81 218 1.17e-21 91.7
MsG0880043036.01.T01 MTR_5g097820 38.667 150 73 6 18 158 96 235 3.06e-21 90.9
MsG0880043036.01.T01 MTR_6g009350 34.211 190 71 7 95 255 5 169 1.73e-20 87.0
MsG0880043036.01.T01 MTR_7g019250 33.161 193 95 5 75 255 203 373 8.51e-20 89.0
MsG0880043036.01.T01 MTR_1g098180 31.128 257 129 11 7 256 79 294 1.68e-19 87.4
MsG0880043036.01.T01 MTR_7g023800 33.333 264 105 14 17 256 33 249 1.79e-19 86.7
MsG0880043036.01.T01 MTR_5g023970 42.647 136 61 4 132 255 2 132 2.15e-19 84.3
MsG0880043036.01.T01 MTR_6g465360 38.816 152 68 9 18 148 134 281 1.61e-17 80.9
MsG0880043036.01.T01 MTR_5g086780 32.461 191 64 4 65 255 64 189 3.20e-17 79.0
MsG0880043036.01.T01 MTR_6g090260 41.732 127 60 5 141 255 75 199 4.33e-17 79.3
MsG0880043036.01.T01 MTR_3g018750 36.207 174 84 6 98 250 3 170 6.75e-17 78.2
MsG0880043036.01.T01 MTR_5g097850 44.531 128 46 5 146 255 63 183 9.67e-17 78.2
MsG0880043036.01.T01 MTR_8g035690 32.895 228 92 9 71 255 30 239 1.98e-16 78.2
MsG0880043036.01.T01 MTR_5g097540 36.585 123 73 4 131 250 87 207 8.85e-16 76.3
MsG0880043036.01.T01 MTR_5g097660 57.812 64 27 0 202 265 3 66 1.90e-14 68.9
MsG0880043036.01.T01 MTR_5g091150 29.148 223 94 8 30 226 2 186 2.71e-14 70.5
MsG0880043036.01.T01 MTR_1g115205 34.395 157 70 6 21 165 87 222 9.95e-14 69.7
MsG0880043036.01.T01 MTR_4g014370 63.636 44 16 0 18 61 97 140 2.63e-13 69.3
MsG0880043036.01.T01 MTR_7g017150 35.766 137 53 5 135 250 76 198 3.34e-12 65.5
MsG0880043036.01.T01 MTR_7g017120 34.969 163 65 7 113 250 51 197 3.82e-12 65.5
MsG0880043036.01.T01 MTR_5g094350 32.547 212 85 13 17 190 85 276 5.21e-12 65.1
MsG0880043036.01.T01 MTR_5g096050 38.889 108 50 3 151 255 9 103 1.48e-11 60.8
MsG0880043036.01.T01 MTR_4g094400 61.538 52 20 0 199 250 59 110 3.23e-11 60.1
MsG0880043036.01.T01 MTR_2g021155 30.909 220 126 10 38 250 118 318 3.90e-11 63.9
MsG0880043036.01.T01 MTR_1g047080 38.182 110 50 5 17 119 28 126 8.44e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTGTTATACTTGCTTTC+TGG 0.163821 8:+17961374 MsG0880043036.01.T01:CDS
ACCTAATATTGAAAATTATT+TGG 0.195038 8:+17961691 MsG0880043036.01.T01:CDS
TTGGACTAAACTTTCATTCT+TGG 0.229534 8:+17962122 MsG0880043036.01.T01:CDS
TTGAAAATTATTTGGAAGTT+GGG 0.287234 8:+17961699 MsG0880043036.01.T01:CDS
ATTTGGAAGTTGGGCAAGTC+TGG 0.301126 8:+17961708 MsG0880043036.01.T01:CDS
CTTGACATTGAACATCCTAT+TGG 0.301852 8:+17962152 MsG0880043036.01.T01:CDS
ATTGAAAATTATTTGGAAGT+TGG 0.312555 8:+17961698 MsG0880043036.01.T01:CDS
GTACACCTAATGTTGTATTA+TGG 0.333298 8:+17961513 MsG0880043036.01.T01:CDS
TGATACATATGAGCCATTAT+TGG 0.355071 8:+17961871 MsG0880043036.01.T01:intron
GGGTTCCATAATACAACATT+AGG 0.360935 8:-17961518 None:intergenic
TGTATCGATGCTTTCTGATC+TGG 0.364354 8:+17961966 MsG0880043036.01.T01:CDS
CATTCAATTTGTTGGTAGTT+GGG 0.370305 8:-17961538 None:intergenic
AAGTATAACACATGGTGATT+AGG 0.370326 8:-17961365 None:intergenic
GGGTGTCATGTCGTTACATA+TGG 0.372083 8:+17961729 MsG0880043036.01.T01:CDS
ACATTCAATTTGTTGGTAGT+TGG 0.374011 8:-17961539 None:intergenic
AGAATAAGGTCAAATTAGAT+TGG 0.382141 8:+17961408 MsG0880043036.01.T01:CDS
GATTGGTCATTCTCTTGAAA+TGG 0.384274 8:-17961437 None:intergenic
CTGGATATGCCTCAATGTTA+TGG 0.385153 8:+17961794 MsG0880043036.01.T01:CDS
AACTTGGTGTGAAGGAATCT+TGG 0.397695 8:+17962103 MsG0880043036.01.T01:CDS
TACATCGATGCTTTCTGATC+TGG 0.406816 8:+17961927 MsG0880043036.01.T01:CDS
TTGATGACAGAGTTTGTTGT+AGG 0.411426 8:-17961338 None:intergenic
TGGATATGCCTCAATGTTAT+GGG 0.423164 8:+17961795 MsG0880043036.01.T01:CDS
TAAGTCAATGACACCAATAA+TGG 0.424497 8:-17961884 None:intergenic
CCATTACTTCCCTCTCCAAT+AGG 0.425160 8:-17962167 None:intergenic
AGGAAGGACATTCAATTTGT+TGG 0.428381 8:-17961546 None:intergenic
TATTCTAGCTCATAAAGTAC+TGG 0.430658 8:-17961587 None:intergenic
AGGATGTTCAATGTCAAGTA+AGG 0.442688 8:-17962147 None:intergenic
CAAACAATGCCGTTAATAAC+CGG 0.442912 8:-17961476 None:intergenic
CTCTTGGAGGAAAATTGATC+TGG 0.452374 8:+17961775 MsG0880043036.01.T01:CDS
ATGACAGAGTTTGTTGTAGG+AGG 0.462735 8:-17961335 None:intergenic
CAACATTAGGTGTACGTCCT+TGG 0.488749 8:-17961505 None:intergenic
ATGTGTGCTGAGATACTTGA+TGG 0.491408 8:+17962008 MsG0880043036.01.T01:CDS
ATTTGGTTATGACCATGTTA+AGG 0.491884 8:+17961625 MsG0880043036.01.T01:CDS
ATGGTATTAAATCAGTCCAT+TGG 0.491901 8:+17962027 MsG0880043036.01.T01:CDS
TTTGGAAGTTGGGCAAGTCT+GGG 0.527492 8:+17961709 MsG0880043036.01.T01:CDS
ATTCTAGCTCATAAAGTACT+GGG 0.537314 8:-17961586 None:intergenic
CCTATTGGAGAGGGAAGTAA+TGG 0.543490 8:+17962167 MsG0880043036.01.T01:CDS
CAATGTTATGGGACTACTGT+AGG 0.547382 8:+17961806 MsG0880043036.01.T01:CDS
CCTTGTAGTCTTCCTTAACA+TGG 0.553676 8:-17961637 None:intergenic
TTTGGGTGAACTTGGTGTGA+AGG 0.567507 8:+17962095 MsG0880043036.01.T01:CDS
TCATTCTCTTGAAATGGAGG+TGG 0.572121 8:-17961431 None:intergenic
CCATGTTAAGGAAGACTACA+AGG 0.579257 8:+17961637 MsG0880043036.01.T01:CDS
ATAATTTGAGATCAAACCAA+TGG 0.586703 8:-17962043 None:intergenic
TGGTCATTCTCTTGAAATGG+AGG 0.588937 8:-17961434 None:intergenic
GGTGTCATGTCGTTACATAT+GGG 0.590145 8:+17961730 MsG0880043036.01.T01:CDS
GGATGTTCAATGTCAAGTAA+GGG 0.606366 8:-17962146 None:intergenic
ATTGAACATCCTATTGGAGA+GGG 0.608320 8:+17962158 MsG0880043036.01.T01:CDS
CATTGAACATCCTATTGGAG+AGG 0.610186 8:+17962157 MsG0880043036.01.T01:CDS
GGGGACTCAGTAGAGCTATG+AGG 0.630736 8:-17961566 None:intergenic
GGCATTGTTTGTCTCTACCA+AGG 0.643300 8:+17961488 MsG0880043036.01.T01:CDS
CAGAAAGCAAGTATAACACA+TGG 0.673219 8:-17961373 None:intergenic
ACTCAGTAGAGCTATGAGGA+AGG 0.675646 8:-17961562 None:intergenic
TTCTAGCTCATAAAGTACTG+GGG 0.688898 8:-17961585 None:intergenic
ACAGTAGTCCCATAACATTG+AGG 0.725493 8:-17961803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCTAATATTGAAAATTATT+TGG + Chr8:17961691-17961710 MsG0880043036.01.T01:CDS 15.0%
!!! TCCAAATAATTTTCAATATT+AGG - Chr8:17961695-17961714 None:intergenic 15.0%
!! ATTGAAAATTATTTGGAAGT+TGG + Chr8:17961698-17961717 MsG0880043036.01.T01:CDS 20.0%
!! TTGAAAATTATTTGGAAGTT+GGG + Chr8:17961699-17961718 MsG0880043036.01.T01:CDS 20.0%
!!! ACTTTTCACATATCAATTTT+GGG + Chr8:17962078-17962097 MsG0880043036.01.T01:CDS 20.0%
!!! CTAGAATATATTCATTTTCA+TGG + Chr8:17961602-17961621 MsG0880043036.01.T01:CDS 20.0%
!!! TACTTTTCACATATCAATTT+TGG + Chr8:17962077-17962096 MsG0880043036.01.T01:CDS 20.0%
!!! TATATTCATTTTCATGGATT+TGG + Chr8:17961608-17961627 MsG0880043036.01.T01:CDS 20.0%
! ACAGTCTAAAAAATAACTCT+TGG + Chr8:17961759-17961778 MsG0880043036.01.T01:CDS 25.0%
! AGAATAAGGTCAAATTAGAT+TGG + Chr8:17961408-17961427 MsG0880043036.01.T01:CDS 25.0%
!! ATAATTTGAGATCAAACCAA+TGG - Chr8:17962046-17962065 None:intergenic 25.0%
!!! GACCAATCTGTTTTTATTTT+GGG + Chr8:17961452-17961471 MsG0880043036.01.T01:CDS 25.0%
!!! TGACCAATCTGTTTTTATTT+TGG + Chr8:17961451-17961470 MsG0880043036.01.T01:CDS 25.0%
AACTCCATTCAAATACACAA+AGG - Chr8:17961834-17961853 None:intergenic 30.0%
AAGTATAACACATGGTGATT+AGG - Chr8:17961368-17961387 None:intergenic 30.0%
ATGGTATTAAATCAGTCCAT+TGG + Chr8:17962027-17962046 MsG0880043036.01.T01:CDS 30.0%
ATTTGAATGGAGTTTGTCAT+TGG + Chr8:17961840-17961859 MsG0880043036.01.T01:intron 30.0%
ATTTGGTTATGACCATGTTA+AGG + Chr8:17961625-17961644 MsG0880043036.01.T01:CDS 30.0%
GACCCAAAATAAAAACAGAT+TGG - Chr8:17961457-17961476 None:intergenic 30.0%
GTACACCTAATGTTGTATTA+TGG + Chr8:17961513-17961532 MsG0880043036.01.T01:CDS 30.0%
GTCTAAAAAATAACTCTTGG+AGG + Chr8:17961762-17961781 MsG0880043036.01.T01:CDS 30.0%
TAAGTCAATGACACCAATAA+TGG - Chr8:17961887-17961906 None:intergenic 30.0%
TGATACATATGAGCCATTAT+TGG + Chr8:17961871-17961890 MsG0880043036.01.T01:intron 30.0%
TTGGACTAAACTTTCATTCT+TGG + Chr8:17962122-17962141 MsG0880043036.01.T01:CDS 30.0%
!! ACATTCAATTTGTTGGTAGT+TGG - Chr8:17961542-17961561 None:intergenic 30.0%
!! ATATCAATTTTGGGTGAACT+TGG + Chr8:17962087-17962106 MsG0880043036.01.T01:CDS 30.0%
!! ATTCTAGCTCATAAAGTACT+GGG - Chr8:17961589-17961608 None:intergenic 30.0%
!! CATTCAATTTGTTGGTAGTT+GGG - Chr8:17961541-17961560 None:intergenic 30.0%
!! TATTCTAGCTCATAAAGTAC+TGG - Chr8:17961590-17961609 None:intergenic 30.0%
!!! ATCTGTTTTTATTTTGGGTC+CGG + Chr8:17961457-17961476 MsG0880043036.01.T01:CDS 30.0%
AGGAAGGACATTCAATTTGT+TGG - Chr8:17961549-17961568 None:intergenic 35.0%
AGGATGTTCAATGTCAAGTA+AGG - Chr8:17962150-17962169 None:intergenic 35.0%
ATTGAACATCCTATTGGAGA+GGG + Chr8:17962158-17962177 MsG0880043036.01.T01:CDS 35.0%
CAAACAATGCCGTTAATAAC+CGG - Chr8:17961479-17961498 None:intergenic 35.0%
CAGAAAGCAAGTATAACACA+TGG - Chr8:17961376-17961395 None:intergenic 35.0%
CATGTGTTATACTTGCTTTC+TGG + Chr8:17961374-17961393 MsG0880043036.01.T01:CDS 35.0%
CTTGACATTGAACATCCTAT+TGG + Chr8:17962152-17962171 MsG0880043036.01.T01:CDS 35.0%
GGATGTTCAATGTCAAGTAA+GGG - Chr8:17962149-17962168 None:intergenic 35.0%
GGGTTCCATAATACAACATT+AGG - Chr8:17961521-17961540 None:intergenic 35.0%
TGGATATGCCTCAATGTTAT+GGG + Chr8:17961795-17961814 MsG0880043036.01.T01:CDS 35.0%
! GATTGGTCATTCTCTTGAAA+TGG - Chr8:17961440-17961459 None:intergenic 35.0%
!! ATTTTGGGTCCGGTTATTAA+CGG + Chr8:17961467-17961486 MsG0880043036.01.T01:CDS 35.0%
!! TGGTGAGACTTTTGAGAATA+AGG + Chr8:17961394-17961413 MsG0880043036.01.T01:CDS 35.0%
!! TTCTAGCTCATAAAGTACTG+GGG - Chr8:17961588-17961607 None:intergenic 35.0%
!! TTGATGACAGAGTTTGTTGT+AGG - Chr8:17961341-17961360 None:intergenic 35.0%
ACAGTAGTCCCATAACATTG+AGG - Chr8:17961806-17961825 None:intergenic 40.0%
ATGTGTGCTGAGATACTTGA+TGG + Chr8:17962008-17962027 MsG0880043036.01.T01:CDS 40.0%
CAATGTTATGGGACTACTGT+AGG + Chr8:17961806-17961825 MsG0880043036.01.T01:CDS 40.0%
CATTGAACATCCTATTGGAG+AGG + Chr8:17962157-17962176 MsG0880043036.01.T01:CDS 40.0%
CCATGTTAAGGAAGACTACA+AGG + Chr8:17961637-17961656 MsG0880043036.01.T01:CDS 40.0%
CCTTGTAGTCTTCCTTAACA+TGG - Chr8:17961640-17961659 None:intergenic 40.0%
CTCTTGGAGGAAAATTGATC+TGG + Chr8:17961775-17961794 MsG0880043036.01.T01:CDS 40.0%
CTGGATATGCCTCAATGTTA+TGG + Chr8:17961794-17961813 MsG0880043036.01.T01:CDS 40.0%
GGTGCCTTTGTGTATTTGAA+TGG + Chr8:17961827-17961846 MsG0880043036.01.T01:intron 40.0%
TACATCGATGCTTTCTGATC+TGG + Chr8:17961927-17961946 MsG0880043036.01.T01:CDS 40.0%
TCATTCTCTTGAAATGGAGG+TGG - Chr8:17961434-17961453 None:intergenic 40.0%
TGGTCATTCTCTTGAAATGG+AGG - Chr8:17961437-17961456 None:intergenic 40.0%
! GGTGTCATGTCGTTACATAT+GGG + Chr8:17961730-17961749 MsG0880043036.01.T01:CDS 40.0%
! TGTATCGATGCTTTCTGATC+TGG + Chr8:17961966-17961985 MsG0880043036.01.T01:CDS 40.0%
!! AACTTGGTGTGAAGGAATCT+TGG + Chr8:17962103-17962122 MsG0880043036.01.T01:CDS 40.0%
!! ATGACAGAGTTTGTTGTAGG+AGG - Chr8:17961338-17961357 None:intergenic 40.0%
ACTCAGTAGAGCTATGAGGA+AGG - Chr8:17961565-17961584 None:intergenic 45.0%
ATTTGGAAGTTGGGCAAGTC+TGG + Chr8:17961708-17961727 MsG0880043036.01.T01:CDS 45.0%
CAACATTAGGTGTACGTCCT+TGG - Chr8:17961508-17961527 None:intergenic 45.0%
CCATTACTTCCCTCTCCAAT+AGG - Chr8:17962170-17962189 None:intergenic 45.0%
CCTATTGGAGAGGGAAGTAA+TGG + Chr8:17962167-17962186 MsG0880043036.01.T01:CDS 45.0%
GGCATTGTTTGTCTCTACCA+AGG + Chr8:17961488-17961507 MsG0880043036.01.T01:CDS 45.0%
TTTGGAAGTTGGGCAAGTCT+GGG + Chr8:17961709-17961728 MsG0880043036.01.T01:CDS 45.0%
! GGGTGTCATGTCGTTACATA+TGG + Chr8:17961729-17961748 MsG0880043036.01.T01:CDS 45.0%
!! TTTGGGTGAACTTGGTGTGA+AGG + Chr8:17962095-17962114 MsG0880043036.01.T01:CDS 45.0%
GGGGACTCAGTAGAGCTATG+AGG - Chr8:17961569-17961588 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 17961329 17962224 17961329 ID=MsG0880043036.01;Name=MsG0880043036.01
Chr8 mRNA 17961329 17962224 17961329 ID=MsG0880043036.01.T01;Parent=MsG0880043036.01;Name=MsG0880043036.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|279
Chr8 exon 17961329 17961827 17961329 ID=MsG0880043036.01.T01:exon:3547;Parent=MsG0880043036.01.T01
Chr8 exon 17961884 17962224 17961884 ID=MsG0880043036.01.T01:exon:3548;Parent=MsG0880043036.01.T01
Chr8 CDS 17961329 17961827 17961329 ID=MsG0880043036.01.T01:cds;Parent=MsG0880043036.01.T01
Chr8 CDS 17961884 17962224 17961884 ID=MsG0880043036.01.T01:cds;Parent=MsG0880043036.01.T01
Gene Sequence

>MsG0880043036.01.T01

ATGTCTCCTCCTACAACAAACTCTGTCATCAAATTTCCTAATCACCATGTGTTATACTTGCTTTCTGGTGAGACTTTTGAGAATAAGGTCAAATTAGATTGGCCACCTCCATTTCAAGAGAATGACCAATCTGTTTTTATTTTGGGTCCGGTTATTAACGGCATTGTTTGTCTCTACCAAGGACGTACACCTAATGTTGTATTATGGAACCCAACTACCAACAAATTGAATGTCCTTCCTCATAGCTCTACTGAGTCCCCAGTACTTTATGAGCTAGAATATATTCATTTTCATGGATTTGGTTATGACCATGTTAAGGAAGACTACAAGGTGATTCGATATGCATCTTATAGTCTAGATGCACCTAATATTGAAAATTATTTGGAAGTTGGGCAAGTCTGGGTGTCATGTCGTTACATATGGGAGATATACAGTCTAAAAAATAACTCTTGGAGGAAAATTGATCTGGATATGCCTCAATGTTATGGGACTACTGTAGCCATTATTGGTGTCATTGACTTATGCGATGAAGTGTTTTGTACTACATCGATGCTTTCTGATCTGGATGATAATTCTGATTTTGTATCGATGCTTTCTGATCTGGATGATAATTCTGATTTTGTATGTGTGCTGAGATACTTGATGGTATTAAATCAGTCCATTGGTTTGATCTCAAATTATTTTGAGACAACTACTTTTCACATATCAATTTTGGGTGAACTTGGTGTGAAGGAATCTTGGACTAAACTTTCATTCTTGGACCCTTACTTGACATTGAACATCCTATTGGAGAGGGAAGTAATGGCGATTTATTCTTTAGAAGAAAAAATGATGAACTAG
Protein sequence

>MsG0880043036.01.T01

MSPPTTNSVIKFPNHHVLYLLSGETFENKVKLDWPPPFQENDQSVFILGPVINGIVCLYQGRTPNVVLWNPTTNKLNVLPHSSTESPVLYELEYIHFHGFGYDHVKEDYKVIRYASYSLDAPNIENYLEVGQVWVSCRYIWEIYSLKNNSWRKIDLDMPQCYGTTVAIIGVIDLCDEVFCTTSMLSDLDDNSDFVSMLSDLDDNSDFVCVLRYLMVLNQSIGLISNYFETTTFHISILGELGVKESWTKLSFLDPYLTLNILLEREVMAIYSLEEKMMN*