AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001898.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001898.01.T01 MTR_8g064890 46.774 372 139 7 1 319 24 389 6.82e-92 279
MsG0180001898.01.T01 MTR_2g034700 42.005 369 145 10 1 316 22 374 7.24e-75 234
MsG0180001898.01.T01 MTR_8g064790 48.318 327 150 8 1 319 23 338 8.98e-75 233
MsG0180001898.01.T01 MTR_8g467670 39.946 373 156 9 1 319 22 380 9.18e-75 235
MsG0180001898.01.T01 MTR_3g011120 40.669 359 150 11 1 307 22 369 2.61e-71 225
MsG0180001898.01.T01 MTR_8g464770 36.986 365 163 8 1 310 20 372 6.70e-63 204
MsG0180001898.01.T01 MTR_8g036970 41.620 358 106 12 1 305 6 313 1.17e-61 201
MsG0180001898.01.T01 MTR_0129s0070 35.079 382 176 9 1 319 25 397 2.48e-58 193
MsG0180001898.01.T01 MTR_8g063440 36.508 378 168 13 1 319 20 384 6.60e-58 191
MsG0180001898.01.T01 MTR_0831s0010 35.544 377 169 10 1 317 58 420 1.18e-57 192
MsG0180001898.01.T01 MTR_4g117550 35.833 360 180 12 1 319 25 374 1.08e-55 185
MsG0180001898.01.T01 MTR_2g021950 34.921 378 168 11 1 311 24 390 1.12e-55 186
MsG0180001898.01.T01 MTR_2g021800 35.930 398 172 13 1 319 24 417 1.37e-55 186
MsG0180001898.01.T01 MTR_4g028510 37.887 388 160 13 1 317 24 401 2.49e-55 186
MsG0180001898.01.T01 MTR_0129s0120 34.726 383 172 10 1 317 25 395 6.64e-55 184
MsG0180001898.01.T01 MTR_4g028660 36.198 384 167 12 1 316 24 397 8.47e-55 183
MsG0180001898.01.T01 MTR_4g027450 36.198 384 167 12 1 316 24 397 8.47e-55 183
MsG0180001898.01.T01 MTR_5g097330 32.642 386 188 11 1 319 24 404 9.30e-54 181
MsG0180001898.01.T01 MTR_2g066170 33.594 384 174 10 1 319 20 387 3.30e-53 179
MsG0180001898.01.T01 MTR_0054s0090 34.509 397 168 13 1 319 25 407 6.04e-53 179
MsG0180001898.01.T01 MTR_6g090180 35.806 391 167 13 1 316 55 436 8.58e-53 179
MsG0180001898.01.T01 MTR_2g022000 34.447 389 161 13 1 304 24 403 1.05e-52 179
MsG0180001898.01.T01 MTR_6g080680 33.509 379 165 9 1 310 27 387 1.22e-52 178
MsG0180001898.01.T01 MTR_0134s0060 34.577 402 172 14 1 319 20 413 2.32e-52 177
MsG0180001898.01.T01 MTR_6g079810 33.929 392 173 13 1 315 78 460 3.98e-52 178
MsG0180001898.01.T01 MTR_0054s0100 33.924 395 175 12 1 319 25 409 5.32e-52 176
MsG0180001898.01.T01 MTR_4g130330 35.641 390 164 13 1 317 15 390 5.50e-52 176
MsG0180001898.01.T01 MTR_4g028750 36.088 363 155 13 1 296 24 376 5.65e-52 176
MsG0180001898.01.T01 MTR_4g007940 35.207 338 141 10 51 315 7 339 1.65e-51 173
MsG0180001898.01.T01 MTR_6g079770 34.005 397 173 13 1 315 25 414 2.06e-50 172
MsG0180001898.01.T01 MTR_7g017130 33.509 379 186 10 1 319 26 398 2.68e-50 172
MsG0180001898.01.T01 MTR_2g066200 33.770 382 178 9 1 319 20 389 2.82e-50 171
MsG0180001898.01.T01 MTR_4g028680 36.082 388 169 13 1 319 24 401 3.19e-50 172
MsG0180001898.01.T01 MTR_4g055820 36.550 342 143 10 1 273 22 358 3.54e-50 170
MsG0180001898.01.T01 MTR_5g097680 34.140 413 167 12 1 318 25 427 4.75e-50 172
MsG0180001898.01.T01 MTR_5g068490 38.095 294 109 9 76 319 8 278 1.03e-49 167
MsG0180001898.01.T01 MTR_0129s0050 32.668 401 173 13 1 318 22 408 9.33e-49 168
MsG0180001898.01.T01 MTR_5g097350 33.690 374 172 13 2 314 25 383 1.32e-48 167
MsG0180001898.01.T01 MTR_2g104340 32.908 392 174 11 1 319 22 397 1.62e-48 167
MsG0180001898.01.T01 MTR_2g038680 32.817 387 186 11 1 315 24 408 3.20e-48 167
MsG0180001898.01.T01 MTR_2g021770 32.331 399 180 12 1 319 20 408 4.88e-48 166
MsG0180001898.01.T01 MTR_8g039500 35.465 344 148 11 1 287 20 346 6.96e-48 164
MsG0180001898.01.T01 MTR_6g078010 33.762 311 122 8 66 310 35 327 7.70e-48 164
MsG0180001898.01.T01 MTR_7g017170 33.702 362 160 12 1 295 26 374 1.03e-47 165
MsG0180001898.01.T01 MTR_4g014370 34.171 398 159 14 1 310 19 401 6.71e-47 163
MsG0180001898.01.T01 MTR_5g043605 34.727 311 127 10 68 318 45 339 1.81e-46 161
MsG0180001898.01.T01 MTR_5g097220 34.596 396 171 15 1 317 21 407 2.55e-46 162
MsG0180001898.01.T01 MTR_8g018110 32.383 386 169 14 1 311 22 390 8.37e-46 160
MsG0180001898.01.T01 MTR_5g096630 34.097 393 180 14 1 318 26 414 1.55e-45 160
MsG0180001898.01.T01 MTR_8g033140 33.915 401 175 16 1 319 27 419 1.76e-45 159
MsG0180001898.01.T01 MTR_1g053510 33.159 383 178 12 1 311 23 399 1.22e-44 157
MsG0180001898.01.T01 MTR_1g098180 33.421 380 153 13 1 319 27 367 2.52e-44 155
MsG0180001898.01.T01 MTR_5g024260 43.388 242 103 9 1 226 30 253 9.59e-44 155
MsG0180001898.01.T01 MTR_5g037680 31.877 389 166 10 1 313 16 381 1.72e-43 155
MsG0180001898.01.T01 MTR_4g102410 32.552 384 177 12 1 311 69 443 1.83e-43 155
MsG0180001898.01.T01 MTR_2g065840 32.812 384 176 12 1 317 20 388 1.87e-43 154
MsG0180001898.01.T01 MTR_1g007450 32.432 370 177 7 1 304 20 382 3.59e-43 154
MsG0180001898.01.T01 MTR_7g111700 32.782 363 181 11 1 319 23 366 5.16e-43 152
MsG0180001898.01.T01 MTR_1g007410 34.037 379 171 13 1 310 30 398 8.82e-43 152
MsG0180001898.01.T01 MTR_5g059430 32.323 396 173 13 1 311 34 419 1.62e-42 152
MsG0180001898.01.T01 MTR_7g069550 32.982 379 180 13 1 312 22 393 2.25e-42 151
MsG0180001898.01.T01 MTR_2g066150 30.189 371 178 10 1 319 20 361 3.52e-42 149
MsG0180001898.01.T01 MTR_2g065860 32.300 387 177 13 1 319 20 389 4.34e-42 150
MsG0180001898.01.T01 MTR_5g022850 35.535 318 136 12 67 319 41 354 6.31e-41 146
MsG0180001898.01.T01 MTR_8g063370 32.527 372 168 16 1 309 32 383 6.49e-41 147
MsG0180001898.01.T01 MTR_5g069390 31.250 400 171 12 1 315 34 414 1.33e-40 148
MsG0180001898.01.T01 MTR_1g050308 33.841 328 187 9 1 319 42 348 4.97e-40 144
MsG0180001898.01.T01 MTR_8g012090 33.807 352 127 11 1 287 24 334 1.14e-39 142
MsG0180001898.01.T01 MTR_6g090250 30.769 377 152 13 32 310 51 416 2.83e-39 143
MsG0180001898.01.T01 MTR_8g046310 31.830 377 162 14 1 311 24 371 3.07e-39 142
MsG0180001898.01.T01 MTR_8g063310 29.504 383 186 13 1 316 30 395 7.75e-39 142
MsG0180001898.01.T01 MTR_8g063350 32.907 313 133 11 67 316 45 343 7.82e-39 140
MsG0180001898.01.T01 MTR_5g092850 30.729 384 181 13 1 311 24 395 1.35e-38 141
MsG0180001898.01.T01 MTR_7g079640 32.632 380 154 17 1 311 21 367 2.40e-38 140
MsG0180001898.01.T01 MTR_6g079790 33.439 314 131 10 79 319 2 310 2.77e-38 138
MsG0180001898.01.T01 MTR_5g074850 30.933 375 173 12 1 300 43 406 2.83e-38 144
MsG0180001898.01.T01 MTR_8g033110 33.079 393 175 14 1 311 22 408 2.84e-38 140
MsG0180001898.01.T01 MTR_6g461660 34.054 370 162 15 1 302 27 382 5.32e-38 139
MsG0180001898.01.T01 MTR_6g086825 31.088 386 179 13 1 310 78 452 7.86e-38 140
MsG0180001898.01.T01 MTR_5g076490 36.994 346 121 15 50 318 11 336 1.51e-37 137
MsG0180001898.01.T01 MTR_5g096910 32.984 382 177 15 1 317 25 392 1.80e-37 138
MsG0180001898.01.T01 MTR_7g017040 31.525 387 184 14 1 318 24 398 2.78e-36 135
MsG0180001898.01.T01 MTR_8g033090 30.151 398 177 14 1 311 22 405 3.67e-36 135
MsG0180001898.01.T01 MTR_2g104280 28.822 399 188 13 1 318 22 405 9.83e-36 133
MsG0180001898.01.T01 MTR_5g075370 30.239 377 176 13 1 300 16 382 1.93e-35 136
MsG0180001898.01.T01 MTR_8g063330 29.471 397 188 13 1 315 22 408 3.51e-35 133
MsG0180001898.01.T01 MTR_1g050312 32.374 278 128 10 67 300 16 277 3.70e-35 129
MsG0180001898.01.T01 MTR_5g074800 31.214 346 164 13 32 312 2 338 3.79e-35 130
MsG0180001898.01.T01 MTR_5g091140 31.148 366 147 12 1 292 56 390 6.46e-35 131
MsG0180001898.01.T01 MTR_8g013000 33.146 356 140 16 1 277 18 354 1.95e-34 130
MsG0180001898.01.T01 MTR_1g007430 34.421 337 138 13 4 276 7 324 1.98e-34 128
MsG0180001898.01.T01 MTR_6g478230 30.513 390 184 16 1 319 35 408 1.57e-33 127
MsG0180001898.01.T01 MTR_8g046200 31.235 413 159 17 1 310 24 414 5.40e-33 126
MsG0180001898.01.T01 MTR_2g064950 30.914 372 152 15 1 292 18 364 1.42e-32 125
MsG0180001898.01.T01 MTR_5g072060 32.865 356 156 19 1 294 14 348 4.24e-32 126
MsG0180001898.01.T01 MTR_8g046220 29.199 387 186 12 1 311 25 399 9.65e-32 122
MsG0180001898.01.T01 MTR_5g097820 34.855 241 120 9 1 221 31 254 1.31e-31 119
MsG0180001898.01.T01 MTR_5g094350 35.227 264 120 9 1 237 21 260 1.77e-31 119
MsG0180001898.01.T01 MTR_5g096900 38.710 248 101 9 1 221 20 243 3.15e-31 119
MsG0180001898.01.T01 MTR_4g016000 37.129 202 79 6 118 277 2 197 4.82e-31 116
MsG0180001898.01.T01 MTR_1g076810 41.921 229 98 13 1 212 26 236 1.43e-30 122
MsG0180001898.01.T01 MTR_2g021920 34.052 232 86 6 145 311 37 266 1.75e-30 116
MsG0180001898.01.T01 MTR_7g016930 32.903 310 128 8 1 254 24 309 3.56e-30 117
MsG0180001898.01.T01 MTR_8g033000 28.302 371 171 11 32 318 4 363 6.37e-30 117
MsG0180001898.01.T01 MTR_5g064700 38.947 190 82 7 62 220 30 216 1.26e-29 116
MsG0180001898.01.T01 MTR_5g064700 49.412 85 40 2 234 318 287 368 3.43e-15 75.9
MsG0180001898.01.T01 MTR_8g041270 28.180 401 190 16 1 319 23 407 6.18e-29 115
MsG0180001898.01.T01 MTR_5g092860 32.248 307 102 14 67 293 68 348 1.89e-28 113
MsG0180001898.01.T01 MTR_6g004450 34.091 220 90 6 139 308 45 259 3.86e-28 110
MsG0180001898.01.T01 MTR_6g087620 30.000 310 116 10 68 308 2 279 4.89e-28 110
MsG0180001898.01.T01 MTR_7g023800 30.293 307 110 10 68 309 35 302 1.02e-27 110
MsG0180001898.01.T01 MTR_5g086590 31.441 229 96 5 113 290 13 231 1.81e-27 107
MsG0180001898.01.T01 MTR_5g098950 37.234 188 89 5 115 276 90 274 1.39e-25 103
MsG0180001898.01.T01 MTR_6g070880 35.498 231 108 11 1 203 40 257 1.09e-24 100
MsG0180001898.01.T01 MTR_6g071420 35.498 231 108 11 1 203 40 257 1.09e-24 100
MsG0180001898.01.T01 MTR_7g019250 30.918 207 102 3 127 293 206 411 2.33e-24 103
MsG0180001898.01.T01 MTR_8g032980 31.852 270 119 13 1 226 24 272 3.14e-24 102
MsG0180001898.01.T01 MTR_8g032980 44.186 86 48 0 234 319 337 422 1.46e-14 74.3
MsG0180001898.01.T01 MTR_4g014370 34.359 195 77 4 167 311 137 330 3.27e-23 98.2
MsG0180001898.01.T01 MTR_8g073570 39.024 164 81 5 1 156 18 170 1.73e-22 92.4
MsG0180001898.01.T01 MTR_6g465360 35.909 220 106 11 1 193 70 281 1.81e-22 95.5
MsG0180001898.01.T01 MTR_6g090260 34.239 184 65 5 183 310 73 256 3.35e-22 94.0
MsG0180001898.01.T01 MTR_1g047080 27.152 302 185 11 32 319 4 284 5.15e-22 94.4
MsG0180001898.01.T01 MTR_6g009350 32.804 189 72 5 146 281 9 195 1.04e-21 91.3
MsG0180001898.01.T01 MTR_7g104710 32.068 237 108 8 1 225 25 220 1.08e-21 94.0
MsG0180001898.01.T01 MTR_5g037190 32.231 242 121 9 1 229 24 235 7.96e-21 90.1
MsG0180001898.01.T01 MTR_2g104260 33.702 181 93 7 68 226 84 259 3.32e-20 89.0
MsG0180001898.01.T01 MTR_3g018750 28.750 240 106 7 144 318 2 241 5.24e-20 87.8
MsG0180001898.01.T01 MTR_8g035690 30.943 265 108 10 126 317 40 302 2.68e-19 87.0
MsG0180001898.01.T01 MTR_5g023970 31.250 176 70 4 183 307 9 184 2.92e-18 81.6
MsG0180001898.01.T01 MTR_6g079730 41.463 82 48 0 229 310 61 142 7.86e-17 76.6
MsG0180001898.01.T01 MTR_5g036250 51.282 78 37 1 233 310 27 103 2.19e-16 76.3
MsG0180001898.01.T01 MTR_5g097660 42.857 84 47 1 229 311 30 113 7.54e-16 73.2
MsG0180001898.01.T01 MTR_5g097850 29.646 226 123 8 90 293 10 221 8.43e-16 76.3
MsG0180001898.01.T01 MTR_3g030620 39.326 89 52 2 228 315 92 179 3.04e-14 70.1
MsG0180001898.01.T01 MTR_2g021860 44.565 92 47 4 77 164 13 104 1.44e-13 67.4
MsG0180001898.01.T01 MTR_2g022020 41.463 82 46 1 233 314 37 116 1.76e-13 66.6
MsG0180001898.01.T01 MTR_5g066420 41.096 73 43 0 233 305 75 147 5.04e-13 66.2
MsG0180001898.01.T01 MTR_3g058480 28.302 265 145 14 1 251 47 280 8.53e-13 68.6
MsG0180001898.01.T01 MTR_3g058470 27.402 281 152 12 1 252 45 302 1.29e-12 68.2
MsG0180001898.01.T01 MTR_3g019290 31.000 200 86 7 1 191 22 178 1.10e-11 63.2
MsG0180001898.01.T01 MTR_1g050305 49.206 63 29 1 233 292 37 99 1.23e-11 62.0
MsG0180001898.01.T01 MTR_5g096920 38.636 88 53 1 229 315 62 149 1.58e-11 62.0
MsG0180001898.01.T01 MTR_5g091150 30.872 149 69 4 88 236 35 149 2.96e-11 62.4
MsG0180001898.01.T01 MTR_5g049560 33.333 147 77 5 32 160 4 147 9.71e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGATGTGCCATTGGTTT+GGG 0.196485 1:+28994229 MsG0180001898.01.T01:CDS
TGCGGAATTTGAATGAAATT+AGG 0.206849 1:-28993663 None:intergenic
TGGACTAAGCTCTTTGAATT+TGG 0.253363 1:+28994449 MsG0180001898.01.T01:CDS
CAATGACACCTGACCCGTTC+TGG 0.274974 1:+28994118 MsG0180001898.01.T01:CDS
GCGGAATTTGAATGAAATTA+GGG 0.277822 1:-28993662 None:intergenic
ATATGTCTTTCCTCTTCATC+TGG 0.280926 1:+28993743 MsG0180001898.01.T01:CDS
TATTTGTTTATATGACCTTT+TGG 0.282045 1:+28993891 MsG0180001898.01.T01:CDS
CTATATTAGATGGTCGTATT+CGG 0.289632 1:+28994082 MsG0180001898.01.T01:CDS
AATCGCTTGAGAGACTTAAT+AGG 0.292351 1:-28993601 None:intergenic
GTTTGAGAACGAGGTCAAAT+TGG 0.308270 1:+28993807 MsG0180001898.01.T01:CDS
CCCTGCTACTGGAGAAAATA+AGG 0.310751 1:+28993939 MsG0180001898.01.T01:CDS
AATGGGATGTGCCATTGGTT+TGG 0.330811 1:+28994228 MsG0180001898.01.T01:CDS
TGAAAGTCAACGACAAAATT+AGG 0.334418 1:-28993991 None:intergenic
GACTTTCATCTTCGTGCATT+TGG 0.336007 1:+28994006 MsG0180001898.01.T01:CDS
TTCTCCAAGAGTTAGTTCTT+AGG 0.365335 1:-28994152 None:intergenic
ATCACTAATGTGTACTTCAA+TGG 0.394457 1:+28994210 MsG0180001898.01.T01:CDS
ATCATATGGGGAATGAGATT+TGG 0.399877 1:-28993698 None:intergenic
TATATTAGATGGTCGTATTC+GGG 0.407581 1:+28994083 MsG0180001898.01.T01:CDS
CGAATACGACCATCTAATAT+AGG 0.419585 1:-28994081 None:intergenic
TTACTTGTGTTCGTAAATCA+TGG 0.434073 1:+28993622 MsG0180001898.01.T01:CDS
AATGACACCTGACCCGTTCT+GGG 0.456153 1:+28994119 MsG0180001898.01.T01:CDS
GGCTATATATCTCCCAGAAC+GGG 0.456799 1:-28994131 None:intergenic
CATTGGTTTGGGGTTTCAGA+TGG 0.467641 1:+28994240 MsG0180001898.01.T01:CDS
TCACTAATGTGTACTTCAAT+GGG 0.472301 1:+28994211 MsG0180001898.01.T01:CDS
GCACTTTGGAACCCTGCTAC+TGG 0.473310 1:+28993928 MsG0180001898.01.T01:CDS
ATCGCTTGAGAGACTTAATA+GGG 0.475504 1:-28993600 None:intergenic
TATATCTCCCAGAACGGGTC+AGG 0.485799 1:-28994126 None:intergenic
CAGAACGGGTCAGGTGTCAT+TGG 0.486006 1:-28994117 None:intergenic
ATAGCCTAAGAACTAACTCT+TGG 0.489400 1:+28994148 MsG0180001898.01.T01:CDS
ACTTCAATGGGATGTGCCAT+TGG 0.494061 1:+28994223 MsG0180001898.01.T01:CDS
TATGTCTTTCCTCTTCATCT+GGG 0.497113 1:+28993744 MsG0180001898.01.T01:CDS
GGCAGACACTCGGAAAGCCT+TGG 0.503036 1:-28993970 None:intergenic
ATCATAGCAAAGTAGCACTT+TGG 0.503983 1:+28993914 MsG0180001898.01.T01:CDS
GTGATATTAGAGTCAGGAAC+CGG 0.512466 1:-28994192 None:intergenic
CTACTTTGCTATGATCCAAA+AGG 0.513096 1:-28993906 None:intergenic
AAGACCCGTTGTTGATATGC+CGG 0.515778 1:+28994173 MsG0180001898.01.T01:CDS
AAATCGGTGTCAAGGAATCA+TGG 0.518116 1:+28994429 MsG0180001898.01.T01:CDS
GGAACCGGCATATCAACAAC+GGG 0.530240 1:-28994177 None:intergenic
TGGGATGTGCCATTGGTTTG+GGG 0.541836 1:+28994230 MsG0180001898.01.T01:CDS
CCATGCTACAAATGACTACA+AGG 0.552233 1:+28994035 MsG0180001898.01.T01:CDS
CCTTGTAGTCATTTGTAGCA+TGG 0.558869 1:-28994035 None:intergenic
TTAAAAGCATCATCAAATTG+AGG 0.566153 1:-28993838 None:intergenic
GTCCCATGTCTTGTATTGAG+CGG 0.566445 1:+28994471 MsG0180001898.01.T01:CDS
AGACCGCTCAATACAAGACA+TGG 0.569056 1:-28994474 None:intergenic
TTTGGGTGAAATCGGTGTCA+AGG 0.569912 1:+28994421 MsG0180001898.01.T01:CDS
GAAATCGAATAAAACAAACT+TGG 0.571491 1:-28993775 None:intergenic
ACATTAGTGATATTAGAGTC+AGG 0.572251 1:-28994198 None:intergenic
GACAAAATTAGGCAGACACT+CGG 0.573875 1:-28993980 None:intergenic
ATTTGGTAACAAGATTGTTG+CGG 0.577492 1:-28993681 None:intergenic
AGACACTCGGAAAGCCTTGG+AGG 0.581014 1:-28993967 None:intergenic
GAAGCACAGCCCAGATGAAG+AGG 0.585537 1:-28993753 None:intergenic
CATCTGAAACCCCAAACCAA+TGG 0.601857 1:-28994239 None:intergenic
AGGCTATATATCTCCCAGAA+CGG 0.621678 1:-28994132 None:intergenic
GGGTGAGAAGTTTGAGAACG+AGG 0.625275 1:+28993798 MsG0180001898.01.T01:CDS
AAAATAAGGTCATTCCTCCA+AGG 0.637932 1:+28993953 MsG0180001898.01.T01:CDS
AGGAACCGGCATATCAACAA+CGG 0.662472 1:-28994178 None:intergenic
GACCGCTCAATACAAGACAT+GGG 0.664916 1:-28994473 None:intergenic
AAAGCATCATCAAATTGAGG+CGG 0.678033 1:-28993835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTTAAGTCAAAAAAA+TGG + Chr1:28994521-28994540 MsG0180001898.01.T01:CDS 15.0%
!!! AAGTTTGTTTTATTCGATTT+CGG + Chr1:28993777-28993796 MsG0180001898.01.T01:CDS 20.0%
!!! ATTGAAGAGATTGATTTTAA+AGG + Chr1:28994578-28994597 MsG0180001898.01.T01:CDS 20.0%
!!! CTTTTCAACATATCAATTTT+GGG + Chr1:28994404-28994423 MsG0180001898.01.T01:CDS 20.0%
!!! TATTTGTTTATATGACCTTT+TGG + Chr1:28993891-28993910 MsG0180001898.01.T01:CDS 20.0%
! AAGAAAAACTTTGGTACAAT+TGG + Chr1:28994632-28994651 MsG0180001898.01.T01:CDS 25.0%
! CATCAATTTAGAAAAAGATC+TGG - Chr1:28994336-28994355 None:intergenic 25.0%
! GAAATCGAATAAAACAAACT+TGG - Chr1:28993778-28993797 None:intergenic 25.0%
!! CAGATCTTTTTCTAAATTGA+TGG + Chr1:28994334-28994353 MsG0180001898.01.T01:intron 25.0%
!! GCTTTTCAACATATCAATTT+TGG + Chr1:28994403-28994422 MsG0180001898.01.T01:CDS 25.0%
!!! AGTTTGTTTTATTCGATTTC+GGG + Chr1:28993778-28993797 MsG0180001898.01.T01:CDS 25.0%
!!! ATATCAATTTTGGGTGAAAT+CGG + Chr1:28994413-28994432 MsG0180001898.01.T01:CDS 25.0%
!!! GATGCTTTTAATCTTGTTTT+AGG + Chr1:28993850-28993869 MsG0180001898.01.T01:CDS 25.0%
!!! TTAAAAGCATCATCAAATTG+AGG - Chr1:28993841-28993860 None:intergenic 25.0%
ACATTAGTGATATTAGAGTC+AGG - Chr1:28994201-28994220 None:intergenic 30.0%
ATCACTAATGTGTACTTCAA+TGG + Chr1:28994210-28994229 MsG0180001898.01.T01:CDS 30.0%
ATCATCATCATCATCATATG+GGG - Chr1:28993713-28993732 None:intergenic 30.0%
CATCATCATCATCATCATAT+GGG - Chr1:28993714-28993733 None:intergenic 30.0%
CTATATTAGATGGTCGTATT+CGG + Chr1:28994082-28994101 MsG0180001898.01.T01:CDS 30.0%
GCGGAATTTGAATGAAATTA+GGG - Chr1:28993665-28993684 None:intergenic 30.0%
GTACCTTACAAGAAAAACTT+TGG + Chr1:28994623-28994642 MsG0180001898.01.T01:CDS 30.0%
TATATTAGATGGTCGTATTC+GGG + Chr1:28994083-28994102 MsG0180001898.01.T01:CDS 30.0%
TCACTAATGTGTACTTCAAT+GGG + Chr1:28994211-28994230 MsG0180001898.01.T01:CDS 30.0%
TCATCATCATCATCATCATA+TGG - Chr1:28993715-28993734 None:intergenic 30.0%
TGAAAGTCAACGACAAAATT+AGG - Chr1:28993994-28994013 None:intergenic 30.0%
TGCGGAATTTGAATGAAATT+AGG - Chr1:28993666-28993685 None:intergenic 30.0%
TTACTTGTGTTCGTAAATCA+TGG + Chr1:28993622-28993641 MsG0180001898.01.T01:CDS 30.0%
! AGTTTTCGTCCTATATTAGA+TGG + Chr1:28994072-28994091 MsG0180001898.01.T01:CDS 30.0%
! ATTTGGTAACAAGATTGTTG+CGG - Chr1:28993684-28993703 None:intergenic 30.0%
! GTACCAAAGTTTTTCTTGTA+AGG - Chr1:28994629-28994648 None:intergenic 30.0%
! TCTTTTGATGTTTGGATGAA+GGG + Chr1:28994494-28994513 MsG0180001898.01.T01:CDS 30.0%
!! CTAAATTGATGGTGTTGAAT+GGG + Chr1:28994345-28994364 MsG0180001898.01.T01:intron 30.0%
!! TCTAAATTGATGGTGTTGAA+TGG + Chr1:28994344-28994363 MsG0180001898.01.T01:intron 30.0%
!!! GTTTTAGGTTCATCTATCAA+TGG + Chr1:28993865-28993884 MsG0180001898.01.T01:CDS 30.0%
AAAATAAGGTCATTCCTCCA+AGG + Chr1:28993953-28993972 MsG0180001898.01.T01:CDS 35.0%
AATCGCTTGAGAGACTTAAT+AGG - Chr1:28993604-28993623 None:intergenic 35.0%
ATAGCCTAAGAACTAACTCT+TGG + Chr1:28994148-28994167 MsG0180001898.01.T01:CDS 35.0%
ATATGTCTTTCCTCTTCATC+TGG + Chr1:28993743-28993762 MsG0180001898.01.T01:CDS 35.0%
ATCATAGCAAAGTAGCACTT+TGG + Chr1:28993914-28993933 MsG0180001898.01.T01:CDS 35.0%
ATCATATGGGGAATGAGATT+TGG - Chr1:28993701-28993720 None:intergenic 35.0%
ATCGCTTGAGAGACTTAATA+GGG - Chr1:28993603-28993622 None:intergenic 35.0%
CGAATACGACCATCTAATAT+AGG - Chr1:28994084-28994103 None:intergenic 35.0%
GTCATTCAACTTAAGCAATG+AGG + Chr1:28994280-28994299 MsG0180001898.01.T01:intron 35.0%
TATGTCTTTCCTCTTCATCT+GGG + Chr1:28993744-28993763 MsG0180001898.01.T01:CDS 35.0%
TGGACTAAGCTCTTTGAATT+TGG + Chr1:28994449-28994468 MsG0180001898.01.T01:CDS 35.0%
! AAAGCATCATCAAATTGAGG+CGG - Chr1:28993838-28993857 None:intergenic 35.0%
! CTACTTTGCTATGATCCAAA+AGG - Chr1:28993909-28993928 None:intergenic 35.0%
! GTCTTTTGATGTTTGGATGA+AGG + Chr1:28994493-28994512 MsG0180001898.01.T01:CDS 35.0%
! TTCTCCAAGAGTTAGTTCTT+AGG - Chr1:28994155-28994174 None:intergenic 35.0%
! TTTTCACTACACCTGTAGTT+TGG + Chr1:28994306-28994325 MsG0180001898.01.T01:intron 35.0%
AGGCTATATATCTCCCAGAA+CGG - Chr1:28994135-28994154 None:intergenic 40.0%
CCATGCTACAAATGACTACA+AGG + Chr1:28994035-28994054 MsG0180001898.01.T01:CDS 40.0%
CCTTGTAGTCATTTGTAGCA+TGG - Chr1:28994038-28994057 None:intergenic 40.0%
GACAAAATTAGGCAGACACT+CGG - Chr1:28993983-28994002 None:intergenic 40.0%
GACTTTCATCTTCGTGCATT+TGG + Chr1:28994006-28994025 MsG0180001898.01.T01:CDS 40.0%
GTGATATTAGAGTCAGGAAC+CGG - Chr1:28994195-28994214 None:intergenic 40.0%
GTTTGAGAACGAGGTCAAAT+TGG + Chr1:28993807-28993826 MsG0180001898.01.T01:CDS 40.0%
! TTGAGCGGTCTTTTGATGTT+TGG + Chr1:28994486-28994505 MsG0180001898.01.T01:CDS 40.0%
!! AAATCGGTGTCAAGGAATCA+TGG + Chr1:28994429-28994448 MsG0180001898.01.T01:CDS 40.0%
!!! ACCTTATTTTCTCCAGTAGC+AGG - Chr1:28993943-28993962 None:intergenic 40.0%
!!! CCTTATTTTCTCCAGTAGCA+GGG - Chr1:28993942-28993961 None:intergenic 40.0%
AAGACCCGTTGTTGATATGC+CGG + Chr1:28994173-28994192 MsG0180001898.01.T01:CDS 45.0%
ACTTCAATGGGATGTGCCAT+TGG + Chr1:28994223-28994242 MsG0180001898.01.T01:CDS 45.0%
AGACCGCTCAATACAAGACA+TGG - Chr1:28994477-28994496 None:intergenic 45.0%
AGGAACCGGCATATCAACAA+CGG - Chr1:28994181-28994200 None:intergenic 45.0%
CCCTGCTACTGGAGAAAATA+AGG + Chr1:28993939-28993958 MsG0180001898.01.T01:CDS 45.0%
GACCGCTCAATACAAGACAT+GGG - Chr1:28994476-28994495 None:intergenic 45.0%
GGCTATATATCTCCCAGAAC+GGG - Chr1:28994134-28994153 None:intergenic 45.0%
GTCCCATGTCTTGTATTGAG+CGG + Chr1:28994471-28994490 MsG0180001898.01.T01:CDS 45.0%
! AATGGGATGTGCCATTGGTT+TGG + Chr1:28994228-28994247 MsG0180001898.01.T01:CDS 45.0%
! CATCTGAAACCCCAAACCAA+TGG - Chr1:28994242-28994261 None:intergenic 45.0%
!! ATGGGATGTGCCATTGGTTT+GGG + Chr1:28994229-28994248 MsG0180001898.01.T01:CDS 45.0%
!! CATTGGTTTGGGGTTTCAGA+TGG + Chr1:28994240-28994259 MsG0180001898.01.T01:CDS 45.0%
!! TTTGGGTGAAATCGGTGTCA+AGG + Chr1:28994421-28994440 MsG0180001898.01.T01:CDS 45.0%
AATGACACCTGACCCGTTCT+GGG + Chr1:28994119-28994138 MsG0180001898.01.T01:CDS 50.0%
GATCTGGCATGCCAAACTAC+AGG - Chr1:28994320-28994339 None:intergenic 50.0%
GGAACCGGCATATCAACAAC+GGG - Chr1:28994180-28994199 None:intergenic 50.0%
GGGTGAGAAGTTTGAGAACG+AGG + Chr1:28993798-28993817 MsG0180001898.01.T01:CDS 50.0%
TATATCTCCCAGAACGGGTC+AGG - Chr1:28994129-28994148 None:intergenic 50.0%
!! TGGGATGTGCCATTGGTTTG+GGG + Chr1:28994230-28994249 MsG0180001898.01.T01:CDS 50.0%
AGACACTCGGAAAGCCTTGG+AGG - Chr1:28993970-28993989 None:intergenic 55.0%
CAATGACACCTGACCCGTTC+TGG + Chr1:28994118-28994137 MsG0180001898.01.T01:CDS 55.0%
GAAGCACAGCCCAGATGAAG+AGG - Chr1:28993756-28993775 None:intergenic 55.0%
! CAGAACGGGTCAGGTGTCAT+TGG - Chr1:28994120-28994139 None:intergenic 55.0%
!! GCACTTTGGAACCCTGCTAC+TGG + Chr1:28993928-28993947 MsG0180001898.01.T01:CDS 55.0%
GGCAGACACTCGGAAAGCCT+TGG - Chr1:28993973-28993992 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 28993586 28994670 28993586 ID=MsG0180001898.01;Name=MsG0180001898.01
Chr1 mRNA 28993586 28994670 28993586 ID=MsG0180001898.01.T01;Parent=MsG0180001898.01;Name=MsG0180001898.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|0.5|2|0|319
Chr1 exon 28993586 28994261 28993586 ID=MsG0180001898.01.T01:exon:18888;Parent=MsG0180001898.01.T01
Chr1 exon 28994387 28994670 28994387 ID=MsG0180001898.01.T01:exon:18889;Parent=MsG0180001898.01.T01
Chr1 CDS 28993586 28994261 28993586 ID=MsG0180001898.01.T01:cds;Parent=MsG0180001898.01.T01
Chr1 CDS 28994387 28994670 28994387 ID=MsG0180001898.01.T01:cds;Parent=MsG0180001898.01.T01
Gene Sequence

>MsG0180001898.01.T01

ATTCTCTCTAAACTCCCTATTAAGTCTCTCAAGCGATTACTTGTGTTCGTAAATCATGGTCTCTTTTATTTCAAAACCCTAATTTCATTCAAATTCCGCAACAATCTTGTTACCAAATCTCATTCCCCATATGATGATGATGATGATGATGATGATGATATGTCTTTCCTCTTCATCTGGGCTGTGCTTCCAAGTTTGTTTTATTCGATTTCGGGTGAGAAGTTTGAGAACGAGGTCAAATTGGATCTGCCGCCTCAATTTGATGATGCTTTTAATCTTGTTTTAGGTTCATCTATCAATGGCATTATTTGTTTATATGACCTTTTGGATCATAGCAAAGTAGCACTTTGGAACCCTGCTACTGGAGAAAATAAGGTCATTCCTCCAAGGCTTTCCGAGTGTCTGCCTAATTTTGTCGTTGACTTTCATCTTCGTGCATTTGGTTATGACCATGCTACAAATGACTACAAGGTTATTCAACATGTAAGTTTTCGTCCTATATTAGATGGTCGTATTCGGGAAGAAGATTTGCCAATGACACCTGACCCGTTCTGGGAGATATATAGCCTAAGAACTAACTCTTGGAGAAGACCCGTTGTTGATATGCCGGTTCCTGACTCTAATATCACTAATGTGTACTTCAATGGGATGTGCCATTGGTTTGGGGTTTCAGATGATTGTTATGATAACAAGCTTTTCAACATATCAATTTTGGGTGAAATCGGTGTCAAGGAATCATGGACTAAGCTCTTTGAATTTGGTCCCATGTCTTGTATTGAGCGGTCTTTTGATGTTTGGATGAAGGGTAAAATATTCTTAAGTCAAAAAAATGGTAAAATAGCTTGTTTTGATTTAACTACTGAAGTGATTGAAGAGATTGATTTTAAAGGAGATAGTAAGAATTGTCTAATCGTACCTTACAAGAAAAACTTTGGTACAATTGGAGAAATAGACAATTAA
Protein sequence

>MsG0180001898.01.T01

ILSKLPIKSLKRLLVFVNHGLFYFKTLISFKFRNNLVTKSHSPYDDDDDDDDDMSFLFIWAVLPSLFYSISGEKFENEVKLDLPPQFDDAFNLVLGSSINGIICLYDLLDHSKVALWNPATGENKVIPPRLSECLPNFVVDFHLRAFGYDHATNDYKVIQHVSFRPILDGRIREEDLPMTPDPFWEIYSLRTNSWRRPVVDMPVPDSNITNVYFNGMCHWFGVSDDCYDNKLFNISILGEIGVKESWTKLFEFGPMSCIERSFDVWMKGKIFLSQKNGKIACFDLTTEVIEEIDFKGDSKNCLIVPYKKNFGTIGEIDN*