AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028062.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028062.01.T01 MTR_5g069390 83.190 232 36 3 1 229 65 296 4.30e-138 397
MsG0580028062.01.T01 MTR_5g059430 72.199 241 56 4 1 231 65 304 6.37e-122 353
MsG0580028062.01.T01 MTR_5g037680 57.642 229 82 4 1 228 47 261 6.39e-86 262
MsG0580028062.01.T01 MTR_5g097820 55.300 217 87 4 1 216 62 269 7.76e-82 246
MsG0580028062.01.T01 MTR_8g063440 42.424 231 114 8 1 228 51 265 2.14e-44 153
MsG0580028062.01.T01 MTR_8g012090 39.506 243 79 9 1 228 55 244 3.50e-42 146
MsG0580028062.01.T01 MTR_4g055820 41.004 239 116 9 2 228 54 279 4.08e-42 146
MsG0580028062.01.T01 MTR_2g038680 40.711 253 113 9 1 228 55 295 2.63e-40 143
MsG0580028062.01.T01 MTR_0054s0090 38.000 250 114 10 1 228 56 286 1.75e-39 140
MsG0580028062.01.T01 MTR_7g017130 39.076 238 119 7 1 228 57 278 3.45e-39 139
MsG0580028062.01.T01 MTR_7g017170 39.076 238 119 7 1 228 57 278 3.64e-39 140
MsG0580028062.01.T01 MTR_1g007410 38.306 248 113 11 1 228 61 288 1.19e-38 138
MsG0580028062.01.T01 MTR_8g041270 40.000 240 123 8 2 228 51 282 1.77e-38 138
MsG0580028062.01.T01 MTR_7g017040 37.705 244 117 8 1 228 55 279 2.31e-38 137
MsG0580028062.01.T01 MTR_5g097350 38.627 233 123 8 1 227 55 273 3.86e-38 137
MsG0580028062.01.T01 MTR_0054s0100 37.052 251 117 9 1 228 56 288 4.45e-38 137
MsG0580028062.01.T01 MTR_2g021770 38.211 246 124 10 1 228 51 286 3.64e-37 134
MsG0580028062.01.T01 MTR_0129s0070 38.397 237 121 10 1 228 56 276 7.89e-37 133
MsG0580028062.01.T01 MTR_4g102410 40.408 245 113 12 1 228 100 328 1.25e-36 134
MsG0580028062.01.T01 MTR_2g104340 37.917 240 119 10 2 228 50 272 4.48e-36 131
MsG0580028062.01.T01 MTR_5g096630 39.592 245 115 12 1 228 57 285 5.51e-36 131
MsG0580028062.01.T01 MTR_8g464770 38.767 227 117 8 5 228 55 262 1.15e-35 130
MsG0580028062.01.T01 MTR_6g461660 37.759 241 120 9 1 228 58 281 2.12e-35 129
MsG0580028062.01.T01 MTR_0129s0120 37.553 237 123 10 1 228 56 276 2.35e-35 129
MsG0580028062.01.T01 MTR_4g117550 38.655 238 120 8 1 228 56 277 3.16e-35 129
MsG0580028062.01.T01 MTR_7g079640 38.261 230 109 9 1 228 52 250 3.35e-34 126
MsG0580028062.01.T01 MTR_2g104280 37.083 240 130 8 2 228 50 281 9.03e-34 125
MsG0580028062.01.T01 MTR_5g096900 38.115 244 109 11 1 228 51 268 1.02e-33 124
MsG0580028062.01.T01 MTR_6g090180 36.400 250 120 8 1 228 86 318 1.21e-33 125
MsG0580028062.01.T01 MTR_8g013000 36.441 236 118 11 1 222 49 266 2.11e-33 124
MsG0580028062.01.T01 MTR_7g069550 35.685 241 125 10 1 228 53 276 4.81e-33 123
MsG0580028062.01.T01 MTR_7g111700 36.364 242 103 9 5 230 43 249 3.02e-32 120
MsG0580028062.01.T01 MTR_6g086825 34.959 246 128 6 1 228 109 340 3.12e-32 122
MsG0580028062.01.T01 MTR_5g096910 39.196 199 103 7 37 228 87 274 3.58e-32 121
MsG0580028062.01.T01 MTR_4g130330 35.656 244 116 12 4 227 47 269 1.71e-31 119
MsG0580028062.01.T01 MTR_7g016930 35.294 238 106 9 1 228 55 254 1.98e-31 118
MsG0580028062.01.T01 MTR_2g021950 35.021 237 132 8 1 228 55 278 2.27e-31 119
MsG0580028062.01.T01 MTR_2g022000 34.524 252 132 8 1 228 55 297 2.49e-31 119
MsG0580028062.01.T01 MTR_2g104260 35.146 239 128 9 2 224 50 277 8.93e-31 115
MsG0580028062.01.T01 MTR_2g021800 35.573 253 129 9 1 228 55 298 1.09e-30 117
MsG0580028062.01.T01 MTR_6g090250 34.815 270 121 11 1 229 50 305 1.12e-30 117
MsG0580028062.01.T01 MTR_5g097330 37.805 246 118 10 1 228 55 283 1.18e-30 117
MsG0580028062.01.T01 MTR_1g007450 37.190 242 126 10 1 230 51 278 1.21e-30 117
MsG0580028062.01.T01 MTR_5g024260 34.025 241 121 10 1 230 61 274 1.57e-30 117
MsG0580028062.01.T01 MTR_6g079810 35.968 253 121 10 1 228 107 343 1.67e-30 117
MsG0580028062.01.T01 MTR_4g028510 36.992 246 118 10 1 228 56 282 3.53e-30 116
MsG0580028062.01.T01 MTR_0134s0060 35.409 257 120 11 2 228 52 292 3.53e-30 116
MsG0580028062.01.T01 MTR_3g011120 35.345 232 124 11 2 228 54 264 5.52e-30 114
MsG0580028062.01.T01 MTR_5g074800 34.979 243 121 13 1 228 1 221 6.22e-30 114
MsG0580028062.01.T01 MTR_4g028750 37.447 235 105 13 13 228 69 280 9.72e-30 114
MsG0580028062.01.T01 MTR_7g104710 35.270 241 98 9 1 228 56 251 6.58e-29 110
MsG0580028062.01.T01 MTR_8g467670 35.000 220 122 9 11 228 63 263 9.41e-29 112
MsG0580028062.01.T01 MTR_8g039500 35.593 236 115 11 1 228 51 257 9.42e-29 111
MsG0580028062.01.T01 MTR_6g079770 35.659 258 120 12 1 228 56 297 1.02e-28 112
MsG0580028062.01.T01 MTR_6g080680 35.918 245 113 6 1 228 58 275 4.16e-28 110
MsG0580028062.01.T01 MTR_5g064700 32.946 258 135 9 1 228 1 250 4.35e-28 109
MsG0580028062.01.T01 MTR_4g028680 36.255 251 112 13 1 228 55 280 7.50e-28 109
MsG0580028062.01.T01 MTR_0831s0010 33.898 236 123 7 1 228 89 299 1.16e-27 109
MsG0580028062.01.T01 MTR_0129s0050 33.725 255 128 10 1 230 53 291 1.54e-27 108
MsG0580028062.01.T01 MTR_5g097650 51.695 118 35 3 2 119 62 157 1.62e-27 103
MsG0580028062.01.T01 MTR_1g076810 40.099 202 97 10 1 195 57 241 2.10e-27 110
MsG0580028062.01.T01 MTR_5g097220 35.521 259 118 12 1 228 52 292 4.13e-27 107
MsG0580028062.01.T01 MTR_6g478230 34.677 248 107 11 1 228 66 278 7.46e-27 107
MsG0580028062.01.T01 MTR_2g066200 33.750 240 125 10 1 228 51 268 9.67e-27 106
MsG0580028062.01.T01 MTR_6g078010 31.405 242 121 9 1 227 3 214 1.10e-26 105
MsG0580028062.01.T01 MTR_5g092860 32.129 249 119 10 1 228 41 260 2.74e-26 104
MsG0580028062.01.T01 MTR_5g022850 33.878 245 133 8 1 228 5 237 5.62e-26 103
MsG0580028062.01.T01 MTR_5g092850 35.681 213 98 8 42 228 86 285 6.15e-26 104
MsG0580028062.01.T01 MTR_5g097680 33.459 266 127 11 1 228 56 309 8.40e-26 104
MsG0580028062.01.T01 MTR_1g053510 34.375 256 120 10 1 229 54 288 1.41e-25 103
MsG0580028062.01.T01 MTR_5g037190 34.483 232 102 8 1 218 55 250 1.47e-25 100
MsG0580028062.01.T01 MTR_4g014370 31.102 254 137 8 1 226 50 293 1.90e-25 103
MsG0580028062.01.T01 MTR_6g087620 36.634 202 79 8 39 227 1 166 2.93e-25 100
MsG0580028062.01.T01 MTR_2g064950 32.669 251 124 11 1 232 49 273 1.22e-24 100
MsG0580028062.01.T01 MTR_5g075370 32.719 217 106 9 39 228 77 280 2.46e-24 101
MsG0580028062.01.T01 MTR_2g065860 33.610 241 123 10 1 228 51 267 3.11e-24 99.8
MsG0580028062.01.T01 MTR_2g034700 31.197 234 130 10 1 227 53 262 5.72e-24 98.6
MsG0580028062.01.T01 MTR_2g066150 31.760 233 110 10 1 228 51 239 5.81e-24 98.6
MsG0580028062.01.T01 MTR_1g050312 34.314 204 90 8 32 228 7 173 1.64e-23 95.9
MsG0580028062.01.T01 MTR_5g074850 31.925 213 108 7 40 228 105 304 2.00e-23 98.6
MsG0580028062.01.T01 MTR_4g028660 34.263 251 116 14 1 228 55 279 2.31e-23 97.4
MsG0580028062.01.T01 MTR_4g027450 34.263 251 116 14 1 228 55 279 2.31e-23 97.4
MsG0580028062.01.T01 MTR_5g091140 33.750 240 115 12 1 228 87 294 2.46e-23 97.4
MsG0580028062.01.T01 MTR_8g063330 33.193 238 127 10 1 228 53 268 2.57e-23 97.8
MsG0580028062.01.T01 MTR_5g072060 32.510 243 110 14 1 228 45 248 4.90e-23 97.4
MsG0580028062.01.T01 MTR_6g070880 33.990 203 94 8 1 180 71 256 5.76e-23 94.0
MsG0580028062.01.T01 MTR_6g071420 33.990 203 94 8 1 180 71 256 5.76e-23 94.0
MsG0580028062.01.T01 MTR_2g065840 31.489 235 137 6 1 228 51 268 6.87e-23 95.9
MsG0580028062.01.T01 MTR_5g049560 40.278 144 82 2 1 140 3 146 1.61e-22 93.2
MsG0580028062.01.T01 MTR_7g023800 32.245 245 95 9 1 228 1 191 1.67e-22 93.6
MsG0580028062.01.T01 MTR_2g066170 31.602 231 140 5 1 228 51 266 2.09e-22 94.4
MsG0580028062.01.T01 MTR_5g091150 32.990 194 78 7 51 228 2 159 2.56e-22 90.9
MsG0580028062.01.T01 MTR_5g086590 41.045 134 69 5 96 228 15 139 3.74e-22 91.3
MsG0580028062.01.T01 MTR_8g064890 33.333 198 114 9 39 227 86 274 5.03e-22 93.6
MsG0580028062.01.T01 MTR_5g094350 30.830 253 117 9 1 228 52 271 5.66e-22 91.7
MsG0580028062.01.T01 MTR_8g033140 31.618 272 112 15 1 228 58 299 1.70e-21 92.4
MsG0580028062.01.T01 MTR_8g046310 32.068 237 125 13 1 230 55 262 4.27e-21 90.9
MsG0580028062.01.T01 MTR_6g079790 35.955 178 80 7 75 227 18 186 6.95e-21 89.4
MsG0580028062.01.T01 MTR_1g007430 33.054 239 122 10 1 228 35 246 7.30e-21 89.4
MsG0580028062.01.T01 MTR_4g007940 34.500 200 106 9 38 228 27 210 7.90e-21 89.7
MsG0580028062.01.T01 MTR_1g047080 30.342 234 122 10 1 228 3 201 1.64e-20 88.2
MsG0580028062.01.T01 MTR_1g098180 28.509 228 118 6 1 228 58 240 1.70e-20 89.0
MsG0580028062.01.T01 MTR_5g094360 44.167 120 57 4 104 216 40 156 8.35e-20 83.2
MsG0580028062.01.T01 MTR_8g036970 28.947 228 106 7 1 227 37 209 7.56e-19 84.3
MsG0580028062.01.T01 MTR_8g046200 29.502 261 134 9 7 228 56 305 1.22e-18 84.3
MsG0580028062.01.T01 MTR_5g043605 31.720 186 103 7 49 228 54 221 1.41e-18 83.6
MsG0580028062.01.T01 MTR_5g076490 33.019 212 92 7 39 228 31 214 1.58e-18 83.2
MsG0580028062.01.T01 MTR_8g018110 28.740 254 136 9 1 228 53 287 3.49e-18 82.8
MsG0580028062.01.T01 MTR_5g068490 30.556 180 98 7 48 227 8 160 9.27e-18 80.5
MsG0580028062.01.T01 MTR_8g033110 28.627 255 134 13 1 228 53 286 4.48e-17 79.7
MsG0580028062.01.T01 MTR_8g033090 28.854 253 134 12 1 228 53 284 1.90e-16 77.8
MsG0580028062.01.T01 MTR_1g050308 33.333 183 100 7 1 180 73 236 1.40e-15 75.1
MsG0580028062.01.T01 MTR_6g004450 38.793 116 54 4 123 228 46 154 1.43e-15 74.3
MsG0580028062.01.T01 MTR_4g016000 38.679 106 57 2 99 200 2 103 2.65e-15 72.4
MsG0580028062.01.T01 MTR_5g023970 49.275 69 35 0 162 230 10 78 4.07e-14 68.9
MsG0580028062.01.T01 MTR_5g098950 41.284 109 60 3 95 200 89 196 6.22e-14 69.7
MsG0580028062.01.T01 MTR_6g009350 40.179 112 52 5 127 227 9 116 6.22e-14 68.6
MsG0580028062.01.T01 MTR_5g097850 32.298 161 54 5 72 228 10 119 7.12e-14 69.3
MsG0580028062.01.T01 MTR_8g073570 38.614 101 54 3 37 137 78 170 1.78e-13 66.6
MsG0580028062.01.T01 MTR_8g063370 30.488 164 106 6 69 227 114 274 3.08e-13 68.6
MsG0580028062.01.T01 MTR_7g017150 50.000 82 33 3 152 229 71 148 5.09e-13 67.0
MsG0580028062.01.T01 MTR_3g018750 34.959 123 57 6 127 228 4 124 5.31e-13 66.6
MsG0580028062.01.T01 MTR_6g090260 46.377 69 35 1 163 229 75 143 9.94e-13 66.2
MsG0580028062.01.T01 MTR_5g096070 37.097 124 48 4 11 134 66 159 1.19e-12 63.9
MsG0580028062.01.T01 MTR_4g023130 32.192 146 77 5 86 228 68 194 2.01e-12 65.9
MsG0580028062.01.T01 MTR_7g017120 53.521 71 25 3 163 229 81 147 2.22e-12 65.1
MsG0580028062.01.T01 MTR_6g465360 34.839 155 70 8 1 140 101 239 2.33e-12 65.5
MsG0580028062.01.T01 MTR_4g023080 32.716 162 85 6 70 228 95 235 2.75e-12 65.5
MsG0580028062.01.T01 MTR_2g021920 33.884 121 61 4 125 228 36 154 2.16e-11 62.4
MsG0580028062.01.T01 MTR_7g101200 31.690 142 77 5 94 230 38 164 2.42e-11 62.0
MsG0580028062.01.T01 MTR_4g021785 30.061 163 89 5 70 228 95 236 3.93e-11 62.4
MsG0580028062.01.T01 MTR_4g094365 27.848 158 99 3 73 228 97 241 5.99e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGTTGGCTCCTATTTA+TGG 0.165275 5:+73917860 MsG0580028062.01.T01:CDS
TCAAAATAACACCGGTATAT+TGG 0.176034 5:+73917566 MsG0580028062.01.T01:CDS
CAAAATAACACCGGTATATT+GGG 0.212171 5:+73917567 MsG0580028062.01.T01:CDS
TGATACGAGGTTTGAGAATA+AGG 0.279046 5:+73917522 MsG0580028062.01.T01:CDS
TGGGGTCGAGCCTATGATTC+TGG 0.298640 5:+73917586 MsG0580028062.01.T01:CDS
ACTATATATCTCCCATAAAT+AGG 0.304674 5:-73917872 None:intergenic
AGTTTAGATTCCTTAGTAGA+TGG 0.337224 5:-73917691 None:intergenic
AGAAGTTGGCTCCTATTTAT+GGG 0.349455 5:+73917861 MsG0580028062.01.T01:CDS
TCTATTGATCATCGCGGATT+TGG 0.358372 5:+73917757 MsG0580028062.01.T01:CDS
AGAATAAGGTCAAATTAGAT+TGG 0.382141 5:+73917536 MsG0580028062.01.T01:CDS
TGTCCATGGAACTCTTTATC+TGG 0.386621 5:+73917633 MsG0580028062.01.T01:CDS
CGCCCCAAGGACTAAATGTT+TGG 0.388796 5:-73917459 None:intergenic
TACACCAAACATTTAGTCCT+TGG 0.397056 5:+73917455 MsG0580028062.01.T01:CDS
ACACCAAACATTTAGTCCTT+GGG 0.399525 5:+73917456 MsG0580028062.01.T01:CDS
GATATTTGTTGTCATTTGAC+TGG 0.422656 5:+73918022 MsG0580028062.01.T01:CDS
AACCTTAAAACCAGAATCAT+AGG 0.427690 5:-73917596 None:intergenic
TCAATAGAAAGAAACCAATT+AGG 0.429017 5:-73917742 None:intergenic
GGAGAAGATATTAAAGAAGT+TGG 0.439945 5:+73917847 MsG0580028062.01.T01:CDS
CTCTCACACTGGATGTGTTA+TGG 0.441835 5:+73917982 MsG0580028062.01.T01:CDS
TTCAAAACTACCATCTATGT+TGG 0.466143 5:-73918084 None:intergenic
TTAGGTTCAGGTAGTGTCCA+TGG 0.494691 5:+73917619 MsG0580028062.01.T01:CDS
CAATTAGGTCCAGAATCAAA+AGG 0.498377 5:-73917727 None:intergenic
ATTATGGAATCCATCTACTA+AGG 0.501333 5:+73917681 MsG0580028062.01.T01:CDS
AATAAGAATGTGAGTTGGTA+TGG 0.504855 5:+73917937 MsG0580028062.01.T01:CDS
CTACCATCTATGTTGGAGAC+GGG 0.522827 5:-73918077 None:intergenic
GGTCCAGAATCAAAAGGGCT+AGG 0.540475 5:-73917721 None:intergenic
GACTATAAAGTGATATGTCA+TGG 0.553108 5:+73917799 MsG0580028062.01.T01:CDS
AATTAGGTCCAGAATCAAAA+GGG 0.553198 5:-73917726 None:intergenic
TAGGCTCGACCCCAATATAC+CGG 0.557023 5:-73917577 None:intergenic
TGCATAATAAGAATGTGAGT+TGG 0.564363 5:+73917932 MsG0580028062.01.T01:CDS
GGTGAACAATTGTACATCGA+TGG 0.573647 5:+73917958 MsG0580028062.01.T01:CDS
ACATCGATGGACTCTCACAC+TGG 0.579780 5:+73917971 MsG0580028062.01.T01:CDS
TACGAAATGATAGCGGTACA+TGG 0.589340 5:-73917392 None:intergenic
AAGGACTAAATGTTTGGTGT+AGG 0.591051 5:-73917453 None:intergenic
GCCAAATATCAAAATAACAC+CGG 0.591808 5:+73917558 MsG0580028062.01.T01:CDS
CCGCTATCATTTCGTAACAA+AGG 0.597951 5:+73917399 MsG0580028062.01.T01:CDS
AAGCCAGATAAAGAGTTCCA+TGG 0.599140 5:-73917636 None:intergenic
CACCAAACATTTAGTCCTTG+GGG 0.600917 5:+73917457 MsG0580028062.01.T01:CDS
TGTATTCTGTTTCTGATACG+AGG 0.606242 5:+73917509 MsG0580028062.01.T01:CDS
ACTACCATCTATGTTGGAGA+CGG 0.610128 5:-73918078 None:intergenic
AAAATAACACCGGTATATTG+GGG 0.613622 5:+73917568 MsG0580028062.01.T01:CDS
ACCATCTATGTTGGAGACGG+GGG 0.614209 5:-73918075 None:intergenic
ATAGTGTAAGAAGAAACTGT+TGG 0.619168 5:+73917890 MsG0580028062.01.T01:CDS
CCAGAATCAAAAGGGCTAGG+AGG 0.627584 5:-73917718 None:intergenic
TCGTAACGAAAACCGCCCCA+AGG 0.627835 5:-73917472 None:intergenic
TACCATCTATGTTGGAGACG+GGG 0.638395 5:-73918076 None:intergenic
CCTTTGTTACGAAATGATAG+CGG 0.689029 5:-73917399 None:intergenic
TTTCTTTCTATTGATCATCG+CGG 0.694062 5:+73917751 MsG0580028062.01.T01:CDS
CAAACATTTAGTCCTTGGGG+CGG 0.705804 5:+73917460 MsG0580028062.01.T01:CDS
TGTTTGGTGTAGGAGCAGAG+AGG 0.729497 5:-73917443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTCAAAAAGAAATTATTA+TGG + Chr5:73917826-73917845 MsG0580028062.01.T01:CDS 15.0%
! ACTATATATCTCCCATAAAT+AGG - Chr5:73917875-73917894 None:intergenic 25.0%
! AGAATAAGGTCAAATTAGAT+TGG + Chr5:73917536-73917555 MsG0580028062.01.T01:CDS 25.0%
! TCAATAGAAAGAAACCAATT+AGG - Chr5:73917745-73917764 None:intergenic 25.0%
AAAATAACACCGGTATATTG+GGG + Chr5:73917568-73917587 MsG0580028062.01.T01:CDS 30.0%
AACCTTAAAACCAGAATCAT+AGG - Chr5:73917599-73917618 None:intergenic 30.0%
AATTAGGTCCAGAATCAAAA+GGG - Chr5:73917729-73917748 None:intergenic 30.0%
AGTTTAGATTCCTTAGTAGA+TGG - Chr5:73917694-73917713 None:intergenic 30.0%
ATAGTGTAAGAAGAAACTGT+TGG + Chr5:73917890-73917909 MsG0580028062.01.T01:CDS 30.0%
ATTATGGAATCCATCTACTA+AGG + Chr5:73917681-73917700 MsG0580028062.01.T01:CDS 30.0%
CAAAATAACACCGGTATATT+GGG + Chr5:73917567-73917586 MsG0580028062.01.T01:CDS 30.0%
GACTATAAAGTGATATGTCA+TGG + Chr5:73917799-73917818 MsG0580028062.01.T01:CDS 30.0%
GCCAAATATCAAAATAACAC+CGG + Chr5:73917558-73917577 MsG0580028062.01.T01:CDS 30.0%
GGAGAAGATATTAAAGAAGT+TGG + Chr5:73917847-73917866 MsG0580028062.01.T01:CDS 30.0%
TCAAAATAACACCGGTATAT+TGG + Chr5:73917566-73917585 MsG0580028062.01.T01:CDS 30.0%
TGCATAATAAGAATGTGAGT+TGG + Chr5:73917932-73917951 MsG0580028062.01.T01:CDS 30.0%
TTTCTTTCTATTGATCATCG+CGG + Chr5:73917751-73917770 MsG0580028062.01.T01:CDS 30.0%
!! AATAAGAATGTGAGTTGGTA+TGG + Chr5:73917937-73917956 MsG0580028062.01.T01:CDS 30.0%
!! GATATTTGTTGTCATTTGAC+TGG + Chr5:73918022-73918041 MsG0580028062.01.T01:CDS 30.0%
!!! ACCGGTGTTATTTTGATATT+TGG - Chr5:73917562-73917581 None:intergenic 30.0%
!!! GATTCTGGTTTTAAGGTTTT+AGG + Chr5:73917601-73917620 MsG0580028062.01.T01:CDS 30.0%
ACACCAAACATTTAGTCCTT+GGG + Chr5:73917456-73917475 MsG0580028062.01.T01:CDS 35.0%
CAATTAGGTCCAGAATCAAA+AGG - Chr5:73917730-73917749 None:intergenic 35.0%
CCTTTGTTACGAAATGATAG+CGG - Chr5:73917402-73917421 None:intergenic 35.0%
TACACCAAACATTTAGTCCT+TGG + Chr5:73917455-73917474 MsG0580028062.01.T01:CDS 35.0%
TGATACGAGGTTTGAGAATA+AGG + Chr5:73917522-73917541 MsG0580028062.01.T01:CDS 35.0%
! AAGAAGTTGGCTCCTATTTA+TGG + Chr5:73917860-73917879 MsG0580028062.01.T01:CDS 35.0%
! AGAAGTTGGCTCCTATTTAT+GGG + Chr5:73917861-73917880 MsG0580028062.01.T01:CDS 35.0%
! GCGACGCGAATTTTATATTA+TGG + Chr5:73917665-73917684 MsG0580028062.01.T01:CDS 35.0%
!! AAGGACTAAATGTTTGGTGT+AGG - Chr5:73917456-73917475 None:intergenic 35.0%
!! CTTTTGATTCTGGACCTAAT+TGG + Chr5:73917728-73917747 MsG0580028062.01.T01:CDS 35.0%
!! TGTATTCTGTTTCTGATACG+AGG + Chr5:73917509-73917528 MsG0580028062.01.T01:CDS 35.0%
!!! AGCCTATGATTCTGGTTTTA+AGG + Chr5:73917594-73917613 MsG0580028062.01.T01:CDS 35.0%
!!! GGTTTTAAGGTTTTAGGTTC+AGG + Chr5:73917607-73917626 MsG0580028062.01.T01:CDS 35.0%
AAGCCAGATAAAGAGTTCCA+TGG - Chr5:73917639-73917658 None:intergenic 40.0%
CACCAAACATTTAGTCCTTG+GGG + Chr5:73917457-73917476 MsG0580028062.01.T01:CDS 40.0%
CCGCTATCATTTCGTAACAA+AGG + Chr5:73917399-73917418 MsG0580028062.01.T01:CDS 40.0%
GGTGAACAATTGTACATCGA+TGG + Chr5:73917958-73917977 MsG0580028062.01.T01:CDS 40.0%
TCTATTGATCATCGCGGATT+TGG + Chr5:73917757-73917776 MsG0580028062.01.T01:CDS 40.0%
TGTCCATGGAACTCTTTATC+TGG + Chr5:73917633-73917652 MsG0580028062.01.T01:CDS 40.0%
CAAACATTTAGTCCTTGGGG+CGG + Chr5:73917460-73917479 MsG0580028062.01.T01:CDS 45.0%
CTCTCACACTGGATGTGTTA+TGG + Chr5:73917982-73918001 MsG0580028062.01.T01:CDS 45.0%
TTAGGTTCAGGTAGTGTCCA+TGG + Chr5:73917619-73917638 MsG0580028062.01.T01:CDS 45.0%
CCAGAATCAAAAGGGCTAGG+AGG - Chr5:73917721-73917740 None:intergenic 50.0%
CGCCCCAAGGACTAAATGTT+TGG - Chr5:73917462-73917481 None:intergenic 50.0%
GGTCCAGAATCAAAAGGGCT+AGG - Chr5:73917724-73917743 None:intergenic 50.0%
TAGGCTCGACCCCAATATAC+CGG - Chr5:73917580-73917599 None:intergenic 50.0%
! ACATCGATGGACTCTCACAC+TGG + Chr5:73917971-73917990 MsG0580028062.01.T01:CDS 50.0%
!! CCTCCTAGCCCTTTTGATTC+TGG + Chr5:73917718-73917737 MsG0580028062.01.T01:CDS 50.0%
!! TGTTTGGTGTAGGAGCAGAG+AGG - Chr5:73917446-73917465 None:intergenic 50.0%
CTATGTTGGAGACGGGGGTA+CGG - Chr5:73918073-73918092 None:intergenic 55.0%
TCGTAACGAAAACCGCCCCA+AGG - Chr5:73917475-73917494 None:intergenic 55.0%
TGGGGTCGAGCCTATGATTC+TGG + Chr5:73917586-73917605 MsG0580028062.01.T01:CDS 55.0%
! TATGTTGGAGACGGGGGTAC+GGG - Chr5:73918072-73918091 None:intergenic 55.0%
! ACGGGGGTACGGGTGTTGTA+AGG - Chr5:73918062-73918081 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 73917394 73918092 73917394 ID=MsG0580028062.01;Name=MsG0580028062.01
Chr5 mRNA 73917394 73918092 73917394 ID=MsG0580028062.01.T01;Parent=MsG0580028062.01;Name=MsG0580028062.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|232
Chr5 exon 73917394 73918092 73917394 ID=MsG0580028062.01.T01:exon:23649;Parent=MsG0580028062.01.T01
Chr5 CDS 73917394 73918092 73917394 ID=MsG0580028062.01.T01:cds;Parent=MsG0580028062.01.T01
Gene Sequence

>MsG0580028062.01.T01

ATGTACCGCTATCATTTCGTAACAAAGGATCATTCTTATTATGATAATACCTCTCTGCTCCTACACCAAACATTTAGTCCTTGGGGCGGTTTTCGTTACGAAGATACATTTGAGCTGTATTCTGTTTCTGATACGAGGTTTGAGAATAAGGTCAAATTAGATTGGCCAAATATCAAAATAACACCGGTATATTGGGGTCGAGCCTATGATTCTGGTTTTAAGGTTTTAGGTTCAGGTAGTGTCCATGGAACTCTTTATCTGGCTTGTGCACGCGACGCGAATTTTATATTATGGAATCCATCTACTAAGGAATCTAAACTTATTCCTCCTAGCCCTTTTGATTCTGGACCTAATTGGTTTCTTTCTATTGATCATCGCGGATTTGGTTATGACAGTATTCAAGACGACTATAAAGTGATATGTCATGGAAAAGTTTCAAAAAGAAATTATTATGGAGAAGATATTAAAGAAGTTGGCTCCTATTTATGGGAGATATATAGTGTAAGAAGAAACTGTTGGAGAAAACTTGATGTCGATATGCATAATAAGAATGTGAGTTGGTATGGTGAACAATTGTACATCGATGGACTCTCACACTGGATGTGTTATGGTGAAACACGTTATGAAAGATATTTGTTGTCATTTGACTGGAGCAACGAGATTTTCCTTACAACACCCGTACCCCCGTCTCCAACATAG
Protein sequence

>MsG0580028062.01.T01

MYRYHFVTKDHSYYDNTSLLLHQTFSPWGGFRYEDTFELYSVSDTRFENKVKLDWPNIKITPVYWGRAYDSGFKVLGSGSVHGTLYLACARDANFILWNPSTKESKLIPPSPFDSGPNWFLSIDHRGFGYDSIQDDYKVICHGKVSKRNYYGEDIKEVGSYLWEIYSVRRNCWRKLDVDMHNKNVSWYGEQLYIDGLSHWMCYGETRYERYLLSFDWSNEIFLTTPVPPSPT*